CmoCh04G004230 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G004230
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionConserved peptide upstream open reading frame 37
LocationCmo_Chr04 : 2104942 .. 2106703 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCATATAGTGTGTCTATAAAGTCTTGTATTTTGATGATCGTTTGGATACTTTTAAAGGAATTTCTTCTCTGTTCTTGGAGTCGTTTAGATCTGACTCAAATTCTCAATCTGCTTCGCTCTGGATTCTCTTCCGATTTTGCTGTAAGATTCTTTCACATTTTCTTGCAATTCTTGCTTGTTTCTCTCCCGTATTTTCCCTTCTTGCTGTCCGATTCTGAATGCCTGGCAAGGGTTTCTGAGAATCTGAAAGAATGAATGGACGTAGAAATTGGTTGTTTCAGAGGCGTGGAAAATCGAAAACGCCGAATGATTTTGTCGGTTCCGTTGGTCGTTAGAGGGAAATTTTGTTTTGATTGTCTTGGGAACTTAGCTGAAGCGAATATAAATTTTTTTGTTCTAAAATGTGTCTATTTTCGTTCGTTTTCTCAGCGATCAAATGGTGGCTTATTTCCCGAGAATATTCTCTGAAATTTCTCTTTGAAAGTCAAGATATTGTTCTTCGGCATCAAGCTCTTTTTATGATGTTCCTCTTGTTTCGTCTTCTTAAAATACTTGTTGGGTTATAAATATGTGTTTGTAGGCGTTGATTTATCTCTATTTTCATTCAAGTGTTTCTCCTTTGCTGATGCCCCTCTTGTTTCATTTTCTTTAAGTACTTTTTGGGTTCTAAATACATGTTATGTAGGCGTTGAGTTCTCTCTCTTTTGTAGCTTAGAAAGAAATTCAAATGTCCATCCAAGTAGTTGGTTTTCTTCATGAAATACTACTTTTCTTCAGTGTACTGTGTACTGACTTTTGTGTCAAATATTTGAATGAATGCAGATTGTTTTAGGACTATGCTTTATGTATTCGATACATCTCATCAGTTTGTAAATTTACGTTTCTTTACTTTTATATGATGTAAATATCTATGTATTTATTATTGTTTTTCATGTTTTTGCAGGGGTTCTATTATATAAGTTGTGGATCAGCGATTGTAGTTGTGGATGTGTTACCTTTACACATTGGGAGAATAATATGCTTTGGTTGAGCACATCCACTGATGTATTTCGCAAAGTTGTGCATTTGAACCTCTATTGTAGGGTTATTTTGTAAAGCACTTTTTGTATCGGTAACACTGAATTATTCCTCCCTGAGCTCGTTCTTTCAATCAACCATGGGTTCCAATCACTTTTTTATCATTTCCTGTGATATCTACATTAGCTGAAAAGTTTCCCGTCTCTAAGCACCATTTTGCGTTCATTCTTCTGTTTTAAATTCCCTTTTTTCTGCTTCTTTGTCAAGGAATCTAGCTAGCTCATTAAGTTTCCTCGTTCATCTTTATCAACTAGTGAGTTTAGTTCTTTCTGCAGTGAATATTCTCCTTTTACCTTCCTCTTTCTTTGTTTGTTGGTACCCTCTTGTGGCTTCTGGTATAGAGGAATTGTTATCCGTTAAGGTTCAGAAGTAGTTATGGTGTGCCAAGCTGCAACCCAGACAAGATTTCGGACACTGAAACACGAGAACGGAATTGCAGGAAAACCAACAATTATAGTTAGAGTGATCGCATGCTTTCAACCTTTGCAGAATTGTCAGGTTTGTCAACTCAGTTTCTGCCCCCTGGTTTTGCTTGTTGATTAATAATTAACTATTGGAATATTTTTACGTTTATTTTATTTGAAAATGCATTAGTAGGCTCATTGAATACCATGATCAAGCTTTTGATATTTTCCTGTTCCAGGCCGAGTATTTTCGACACTTACTTAAGCCGGTCACGTAG

mRNA sequence

ATGTCATATAAAGTAGTTATGGTGTGCCAAGCTGCAACCCAGACAAGATTTCGGACACTGAAACACGAGAACGGAATTGCAGGAAAACCAACAATTATAGTTAGAGTGATCGCATGCTTTCAACCTTTGCAGAATTGTCAGGCCGAGTATTTTCGACACTTACTTAAGCCGGTCACGTAG

Coding sequence (CDS)

ATGTCATATAAAGTAGTTATGGTGTGCCAAGCTGCAACCCAGACAAGATTTCGGACACTGAAACACGAGAACGGAATTGCAGGAAAACCAACAATTATAGTTAGAGTGATCGCATGCTTTCAACCTTTGCAGAATTGTCAGGCCGAGTATTTTCGACACTTACTTAAGCCGGTCACGTAG
Homology
[Close]
BLAST of CmoCh04G004230 vs. TrEMBL
Match: A0A0A0K458_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G066260 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 6.9e-22
Identity = 50/53 (94.34%), Postives = 52/53 (98.11%), Query Frame = 1 

Query: 7  MVCQAATQTRFRTLKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRHLLKPVT 60
          MVCQAA+QTRFR LKHENGIAGKPTIIV+VIACFQPLQNCQAEYFRHLLKPVT
Sbjct: 1  MVCQAASQTRFRALKHENGIAGKPTIIVKVIACFQPLQNCQAEYFRHLLKPVT 53

[Close]
BLAST of CmoCh04G004230 vs. TrEMBL
Match: W9R7U4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_011398 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.2e-21
Identity = 50/53 (94.34%), Postives = 52/53 (98.11%), Query Frame = 1 

Query: 7  MVCQAATQTRFRTLKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRHLLKPVT 60
          MVCQAA+QTRFR LKHENGIAGKPTIIVRVIACFQPLQ+CQAEYFRHLLKPVT
Sbjct: 1  MVCQAASQTRFRALKHENGIAGKPTIIVRVIACFQPLQDCQAEYFRHLLKPVT 53

[Close]
BLAST of CmoCh04G004230 vs. TrEMBL
Match: A0A0A0KVT2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G113180 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 2.6e-21
Identity = 50/53 (94.34%), Postives = 51/53 (96.23%), Query Frame = 1 

Query: 7  MVCQAATQTRFRTLKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRHLLKPVT 60
          MVCQAATQTRFR LKHENGIAGKPTIIVRVIACFQPLQNCQA+YFR LLKPVT
Sbjct: 1  MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQNCQAKYFRQLLKPVT 53

[Close]
BLAST of CmoCh04G004230 vs. TrEMBL
Match: A0A0D2RD15_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G224400 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 5.8e-21
Identity = 47/53 (88.68%), Postives = 52/53 (98.11%), Query Frame = 1 

Query: 7  MVCQAATQTRFRTLKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRHLLKPVT 60
          MVCQAA+QTRFR LKHENGIAGKPTI+VRVIACFQP+++CQAEYFRHLLKPVT
Sbjct: 1  MVCQAASQTRFRALKHENGIAGKPTIVVRVIACFQPMEDCQAEYFRHLLKPVT 53

[Close]
BLAST of CmoCh04G004230 vs. TrEMBL
Match: A0A0B0MJS2_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_26115 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 5.8e-21
Identity = 47/53 (88.68%), Postives = 52/53 (98.11%), Query Frame = 1 

Query: 7  MVCQAATQTRFRTLKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRHLLKPVT 60
          MVCQAA+QTRFR LKHENGIAGKPTI+VRVIACFQP+++CQAEYFRHLLKPVT
Sbjct: 1  MVCQAASQTRFRALKHENGIAGKPTIVVRVIACFQPMEDCQAEYFRHLLKPVT 53

[Close]
BLAST of CmoCh04G004230 vs. TAIR10
Match: AT5G50011.1 (AT5G50011.1 conserved peptide upstream open reading frame 37)

HSP 1 Score: 90.9 bits (224), Expect = 2.9e-19
Identity = 43/53 (81.13%), Postives = 47/53 (88.68%), Query Frame = 1 

Query: 7  MVCQAATQTRFRTLKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRHLLKPVT 60
          MVCQ+A QTRFRTLKHE+GI G   I+VRVIACFQPLQ+CQAEYFR LLKPVT
Sbjct: 1  MVCQSAGQTRFRTLKHEHGITGN--IVVRVIACFQPLQDCQAEYFRQLLKPVT 51

[Close]
BLAST of CmoCh04G004230 vs. TAIR10
Match: AT5G09461.1 (AT5G09461.1 conserved peptide upstream open reading frame 43)

HSP 1 Score: 87.8 bits (216), Expect = 2.4e-18
Identity = 40/54 (74.07%), Postives = 47/54 (87.04%), Query Frame = 1 

Query: 7  MVCQAATQTRFRTLKHEN-GIAGKPTIIVRVIACFQPLQNCQAEYFRHLLKPVT 60
          MV Q+A QTRFRT K+EN G + +PTI+VRVIACFQP+ NCQAEYFRH+LKPVT
Sbjct: 1  MVSQSAGQTRFRTFKYENNGDSSRPTIVVRVIACFQPMDNCQAEYFRHILKPVT 54

[Close]
BLAST of CmoCh04G004230 vs. TAIR10
Match: AT5G64341.1 (AT5G64341.1 conserved peptide upstream open reading frame 40)

HSP 1 Score: 80.5 bits (197), Expect = 3.9e-16
Identity = 36/53 (67.92%), Postives = 43/53 (81.13%), Query Frame = 1 

Query: 7  MVCQAATQTRFRTLKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRHLLKPVT 60
          MVCQ+  +TRFR LK+E G A + TI+VRVI C+QP+ NCQAEYFR LLKPVT
Sbjct: 1  MVCQSPGKTRFRGLKYETGNANESTIVVRVIECYQPMDNCQAEYFRLLLKPVT 53

[Close]
BLAST of CmoCh04G004230 vs. NCBI nr
Match: gi|700188536|gb|KGN43769.1| (hypothetical protein Csa_7G066260 [Cucumis sativus])

HSP 1 Score: 110.5 bits (275), Expect = 9.9e-22
Identity = 50/53 (94.34%), Postives = 52/53 (98.11%), Query Frame = 1 

Query: 7  MVCQAATQTRFRTLKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRHLLKPVT 60
          MVCQAA+QTRFR LKHENGIAGKPTIIV+VIACFQPLQNCQAEYFRHLLKPVT
Sbjct: 1  MVCQAASQTRFRALKHENGIAGKPTIIVKVIACFQPLQNCQAEYFRHLLKPVT 53

[Close]
BLAST of CmoCh04G004230 vs. NCBI nr
Match: gi|703093100|ref|XP_010094825.1| (hypothetical protein L484_011398 [Morus notabilis])

HSP 1 Score: 109.8 bits (273), Expect = 1.7e-21
Identity = 50/53 (94.34%), Postives = 52/53 (98.11%), Query Frame = 1 

Query: 7  MVCQAATQTRFRTLKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRHLLKPVT 60
          MVCQAA+QTRFR LKHENGIAGKPTIIVRVIACFQPLQ+CQAEYFRHLLKPVT
Sbjct: 1  MVCQAASQTRFRALKHENGIAGKPTIIVRVIACFQPLQDCQAEYFRHLLKPVT 53

[Close]
BLAST of CmoCh04G004230 vs. NCBI nr
Match: gi|700198577|gb|KGN53735.1| (hypothetical protein Csa_4G113180 [Cucumis sativus])

HSP 1 Score: 108.6 bits (270), Expect = 3.7e-21
Identity = 50/53 (94.34%), Postives = 51/53 (96.23%), Query Frame = 1 

Query: 7  MVCQAATQTRFRTLKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRHLLKPVT 60
          MVCQAATQTRFR LKHENGIAGKPTIIVRVIACFQPLQNCQA+YFR LLKPVT
Sbjct: 1  MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQNCQAKYFRQLLKPVT 53

[Close]
BLAST of CmoCh04G004230 vs. NCBI nr
Match: gi|763760272|gb|KJB27526.1| (hypothetical protein B456_005G224400 [Gossypium raimondii])

HSP 1 Score: 107.5 bits (267), Expect = 8.3e-21
Identity = 47/53 (88.68%), Postives = 52/53 (98.11%), Query Frame = 1 

Query: 7  MVCQAATQTRFRTLKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRHLLKPVT 60
          MVCQAA+QTRFR LKHENGIAGKPTI+VRVIACFQP+++CQAEYFRHLLKPVT
Sbjct: 1  MVCQAASQTRFRALKHENGIAGKPTIVVRVIACFQPMEDCQAEYFRHLLKPVT 53

[Close]
BLAST of CmoCh04G004230 vs. NCBI nr
Match: gi|728817163|gb|KHG02368.1| (hypothetical protein F383_26115 [Gossypium arboreum])

HSP 1 Score: 107.5 bits (267), Expect = 8.3e-21
Identity = 47/53 (88.68%), Postives = 52/53 (98.11%), Query Frame = 1 

Query: 7  MVCQAATQTRFRTLKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRHLLKPVT 60
          MVCQAA+QTRFR LKHENGIAGKPTI+VRVIACFQP+++CQAEYFRHLLKPVT
Sbjct: 1  MVCQAASQTRFRALKHENGIAGKPTIVVRVIACFQPMEDCQAEYFRHLLKPVT 53

The following BLAST results are available for this feature:
BLAST of CmoCh04G004230 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh04G004230 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K458_CUCSA6.9e-2294.34Uncharacterized protein OS=Cucumis sativus GN=Csa_7G066260 PE=4 SV=1[more]
W9R7U4_9ROSA1.2e-2194.34Uncharacterized protein OS=Morus notabilis GN=L484_011398 PE=4 SV=1[more]
A0A0A0KVT2_CUCSA2.6e-2194.34Uncharacterized protein OS=Cucumis sativus GN=Csa_4G113180 PE=4 SV=1[more]
A0A0D2RD15_GOSRA5.8e-2188.68Uncharacterized protein OS=Gossypium raimondii GN=B456_005G224400 PE=4 SV=1[more]
A0A0B0MJS2_GOSAR5.8e-2188.68Uncharacterized protein OS=Gossypium arboreum GN=F383_26115 PE=4 SV=1[more]
BLAST of CmoCh04G004230 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G50011.12.9e-1981.13 conserved peptide upstream open reading frame 37[more]
AT5G09461.12.4e-1874.07 conserved peptide upstream open reading frame 43[more]
AT5G64341.13.9e-1667.92 conserved peptide upstream open reading frame 40[more]
BLAST of CmoCh04G004230 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700188536|gb|KGN43769.1|9.9e-2294.34hypothetical protein Csa_7G066260 [Cucumis sativus][more]
gi|703093100|ref|XP_010094825.1|1.7e-2194.34hypothetical protein L484_011398 [Morus notabilis][more]
gi|700198577|gb|KGN53735.1|3.7e-2194.34hypothetical protein Csa_4G113180 [Cucumis sativus][more]
gi|763760272|gb|KJB27526.1|8.3e-2188.68hypothetical protein B456_005G224400 [Gossypium raimondii][more]
gi|728817163|gb|KHG02368.1|8.3e-2188.68hypothetical protein F383_26115 [Gossypium arboreum][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G004230.1CmoCh04G004230.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35281FAMILY NOT NAMEDcoord: 8..59
score: 4.3
NoneNo IPR availablePANTHERPTHR35281:SF1CONSERVED PEPTIDE UPSTREAM OPEN READING FRAME 37-RELATEDcoord: 8..59
score: 4.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh04G004230Cla001297Watermelon (97103) v1cmowmB658
CmoCh04G004230Csa4G113180Cucumber (Chinese Long) v2cmocuB710
CmoCh04G004230Csa7G066260Cucumber (Chinese Long) v2cmocuB770
CmoCh04G004230MELO3C018592Melon (DHL92) v3.5.1cmomeB665
CmoCh04G004230ClCG09G015900Watermelon (Charleston Gray)cmowcgB607
CmoCh04G004230Lsi03G009660Bottle gourd (USVL1VR-Ls)cmolsiB659
CmoCh04G004230Cp4.1LG15g03690Cucurbita pepo (Zucchini)cmocpeB672
CmoCh04G004230Cp4.1LG14g04860Cucurbita pepo (Zucchini)cmocpeB668
CmoCh04G004230Cp4.1LG04g07130Cucurbita pepo (Zucchini)cmocpeB703
CmoCh04G004230MELO3C018591.2Melon (DHL92) v3.6.1cmomedB751
CmoCh04G004230CsaV3_7G007020Cucumber (Chinese Long) v3cmocucB0910
CmoCh04G004230Cla97C10G192610Watermelon (97103) v2cmowmbB694
CmoCh04G004230Bhi11G000860Wax gourdcmowgoB0810
CmoCh04G004230CsGy7G005720Cucumber (Gy14) v2cgybcmoB948
CmoCh04G004230CsGy4G009250Cucumber (Gy14) v2cgybcmoB528
CmoCh04G004230Carg08072Silver-seed gourdcarcmoB0514
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh04G004230CmoCh11G014760Cucurbita moschata (Rifu)cmocmoB125
CmoCh04G004230CmoCh16G002890Cucurbita moschata (Rifu)cmocmoB286
CmoCh04G004230CmoCh19G004860Cucurbita moschata (Rifu)cmocmoB395
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G004230Cucumber (Chinese Long) v3cmocucB0830
CmoCh04G004230Cucumber (Chinese Long) v3cmocucB0841
CmoCh04G004230Watermelon (97103) v2cmowmbB684
CmoCh04G004230Watermelon (97103) v2cmowmbB749
CmoCh04G004230Cucurbita moschata (Rifu)cmocmoB289
CmoCh04G004230Cucumber (Gy14) v1cgycmoB0197
CmoCh04G004230Cucumber (Gy14) v1cgycmoB1101
CmoCh04G004230Cucurbita maxima (Rimu)cmacmoB338
CmoCh04G004230Cucurbita maxima (Rimu)cmacmoB728
CmoCh04G004230Wild cucumber (PI 183967)cmocpiB708
CmoCh04G004230Wild cucumber (PI 183967)cmocpiB710
CmoCh04G004230Wild cucumber (PI 183967)cmocpiB720
CmoCh04G004230Cucumber (Chinese Long) v2cmocuB700
CmoCh04G004230Cucumber (Chinese Long) v2cmocuB702
CmoCh04G004230Melon (DHL92) v3.5.1cmomeB694
CmoCh04G004230Watermelon (Charleston Gray)cmowcgB610
CmoCh04G004230Watermelon (97103) v1cmowmB648
CmoCh04G004230Cucurbita pepo (Zucchini)cmocpeB671
CmoCh04G004230Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G004230Bottle gourd (USVL1VR-Ls)cmolsiB646
CmoCh04G004230Cucumber (Gy14) v2cgybcmoB516
CmoCh04G004230Cucumber (Gy14) v2cgybcmoB518
CmoCh04G004230Melon (DHL92) v3.6.1cmomedB788
CmoCh04G004230Silver-seed gourdcarcmoB0403
CmoCh04G004230Silver-seed gourdcarcmoB1177
CmoCh04G004230Silver-seed gourdcarcmoB1178