Carg08072 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg08072
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Transcription factor
Location	Cucurbita_argyrosperma_scaffold_050 : 561140 .. 562882 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GATGATCGTTTGGACACTTTTAAAGGAATTTCTTCTCTGTTTTTGGAGTCGTTTAGATCTGACTCAAATTCTCAATCTGCTTCGCTCTGGATTCTCTTCCGATTTTGCTGTAAGATTCTTTCACATTTTCTTGCAATTCTTGCTTGTTTCTCTCCCGTATTTTCCCTTCTTGCTGTCTGATTCTGAATGCCTGGCAAGGGTTTCTGAGAATCTGAAAGAATGAATGGACGTAGAAATTGGTTGTTTCAGAGGCGTGGAAAATCGAAAACGCCGAATGATTTTGTCGGTTCCGTTGCTCGTTAGAGGGAAATTTTGATTTGATTGTCTTGGGAACTTAGCTGAAGCGAATATAAAATTTTTTGTTCTAAAATGTGTCTATTTTCATTCGTTTTCTCAGCGATCAAATGGTGGCTTATTTCCCGAGAATATTCTCTGAAATTTCTCTTTGAAAGTCAAGATATTGTTCTTCGGAATCAAGCTCTTTTTATGATGTTCCTCTTGTTTCGTCTTCTTAAAATACTTGTTGGGTTATAAATATATGTTTTTGTAGGCGTTGATTTATCTCTATTTCCATTCAAGTATTTCTCCTTTTCTAATGCCCCTCTTGTTTCATTTTCTTTAAGTACTTTTTGGATTCTAAATACATGTTATGTAGGCGTTGAGTTTTCTTTCTTTTGTAGCTTAGAAAGAAATTCAAATTTCCATCCAAATTGTTGGTTTTCCTGTTCCTTTCGTCAGATGAAATACTACTTTTCTTCAGTGTACTGTGTACTGACTTTTGTGTCAAATATTTGAATGAATGCAGATTGTTTTAGTACTATGCTTTATGTATTCGATACATCTCATCAGTTTGTAAATTTACGTTTCTTTACTTTTATATGATGTAAATATCTATGTATTTATTATTGTTTTTCATGTTTTTGCAGGGGTTCTATTATATAAGTTGTGGATCATCGATTGTAGTTGTGGATGTGTTACCTTTACACATTGGGAGAATAATATGCTTTGGTTGAGCACATCCACTGATGTATTTCGCAAAGTTGTGCATTTGAACCTCTATTGTAGGGTTATTTTGTAAAGCACTTTTTGTATCGGTAACACTGAATTATTCCTCCCTGAGCTCGTTCTTTCAATCAACCATGGGTTCCAATCACTTTTTTATCATTTCCTGTGATATCTACATTAGCTGAAAAGTTTCCCGTCTCTAAGCACCATTTTGCGTTCATTCTTCTGTTTTTAAATTCCCTTTTTTCTGCTTCTTTGTCAAGGAATCTAGCTAGCTCATTAAGTTTCCTCGTTCATCTTTATCAACTAGTGAGTTTAGTTGTTTCTGCAGTGAATATTCTCCTTTTACCTTCCTCTTTCTTTGTTTGTTGGTACCCTCTTGTGGCTTCTGGTATAGAGGAATTGTTATCCGTTAAGGTTCAGAAGTAGTTATGGTGTGCCAAGCTGCAACCCAGACAAGATTTCGGACACTGAAACACGAGAACGGAATTGCAGGAAAACCAACAATTATAGTTAGAGTGATCGCATGCTTTCAACCTTTGCAGAATTGTCAGGTTTGTCAACTCAGTTTCTGCCCCCTGGTTTTGCTTGTTGATTAATAATTAACTATTGGAATATTTTTACGTTTATTTTATTTGAAAATGCATTAGTAGGCTCATTGAATACCATGATCAAGCTTTTGATATTTTCCTGTTCCAGGCCGAGTATTTTCGACACTTACTTAAGCCGGTCACGTAG

mRNA sequence

GATGATCGTTTGGACACTTTTAAAGGAATTTCTTCTCTGTTTTTGGAGTCGTTTAGATCTGACTCAAATTCTCAATCTGCTTCGCTCTGGATTCTCTTCCGATTTTGCTGGGTTCTATTATATAAGTTGTGGATCATCGATTGTAGTTGTGGATGTGTTACCTTTACACATTGGGAGAATAATATGCTTTGGTTGAGCACATCCACTGATGTATTTCGCAAAGTTGTGCATTTGAACCTCTATTGTTCAGAAGTAGTTATGGTGTGCCAAGCTGCAACCCAGACAAGATTTCGGACACTGAAACACGAGAACGGAATTGCAGGAAAACCAACAATTATAGTTAGAGTGATCGCATGCTTTCAACCTTTGCAGAATTGTCAGGCCGAGTATTTTCGACACTTACTTAAGCCGGTCACGTAG

Coding sequence (CDS)

GATGATCGTTTGGACACTTTTAAAGGAATTTCTTCTCTGTTTTTGGAGTCGTTTAGATCTGACTCAAATTCTCAATCTGCTTCGCTCTGGATTCTCTTCCGATTTTGCTGGGTTCTATTATATAAGTTGTGGATCATCGATTGTAGTTGTGGATGTGTTACCTTTACACATTGGGAGAATAATATGCTTTGGTTGAGCACATCCACTGATGTATTTCGCAAAGTTGTGCATTTGAACCTCTATTGTTCAGAAGTAGTTATGGTGTGCCAAGCTGCAACCCAGACAAGATTTCGGACACTGAAACACGAGAACGGAATTGCAGGAAAACCAACAATTATAGTTAGAGTGATCGCATGCTTTCAACCTTTGCAGAATTGTCAGGCCGAGTATTTTCGACACTTACTTAAGCCGGTCACGTAG

Protein sequence

DDRLDTFKGISSLFLESFRSDSNSQSASLWILFRFCWVLLYKLWIIDCSCGCVTFTHWENNMLWLSTSTDVFRKVVHLNLYCSEVVMVCQAATQTRFRTLKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRHLLKPVT

Homology

[Close]

BLAST of Carg08072 vs. NCBI nr
Match: XP_016901746.1 (PREDICTED: uncharacterized protein LOC103495379 isoform X2 [Cucumis melo] >KGN43769.1 hypothetical protein Csa_7G066260 [Cucumis sativus])

HSP 1 Score: 110.9 bits (276), Expect = 3.5e-21
Identity = 50/53 (94.34%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 87  MVCQAATQTRFRTLKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRHLLKPVT 140
           MVCQAA+QTRFR LKHENGIAGKPTIIV+VIACFQPLQNCQAEYFRHLLKPVT
Sbjct: 1   MVCQAASQTRFRALKHENGIAGKPTIIVKVIACFQPLQNCQAEYFRHLLKPVT 53

[Close]

BLAST of Carg08072 vs. NCBI nr
Match: EXB57311.1 (hypothetical protein L484_011398 [Morus notabilis])

HSP 1 Score: 110.2 bits (274), Expect = 5.9e-21
Identity = 50/53 (94.34%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 87  MVCQAATQTRFRTLKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRHLLKPVT 140
           MVCQAA+QTRFR LKHENGIAGKPTIIVRVIACFQPLQ+CQAEYFRHLLKPVT
Sbjct: 1   MVCQAASQTRFRALKHENGIAGKPTIIVRVIACFQPLQDCQAEYFRHLLKPVT 53

[Close]

BLAST of Carg08072 vs. NCBI nr
Match: XP_022763666.1 (uncharacterized protein LOC111309083 [Durio zibethinus])

HSP 1 Score: 109.8 bits (273), Expect = 7.7e-21
Identity = 52/68 (76.47%), Postives = 61/68 (89.71%), Query Frame = 0


Query: 72  FRKVVHLNLYCSEVVMVCQAATQTRFRTLKHENGIAGKPTIIVRVIACFQPLQNCQAEYF 131
           F ++V +NL   +VVMVCQAA QTRFR LK+ENGIAGKPTI+VRVIACFQP+++CQAEYF
Sbjct: 62  FDRIV-VNLREKKVVMVCQAAGQTRFRALKYENGIAGKPTIVVRVIACFQPMEDCQAEYF 121

Query: 132 RHLLKPVT 140
           RHLLKPVT
Sbjct: 122 RHLLKPVT 128

[Close]

BLAST of Carg08072 vs. NCBI nr
Match: KGN53735.1 (hypothetical protein Csa_4G113180 [Cucumis sativus])

HSP 1 Score: 109.0 bits (271), Expect = 1.3e-20
Identity = 50/53 (94.34%), Postives = 51/53 (96.23%), Query Frame = 0


Query: 87  MVCQAATQTRFRTLKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRHLLKPVT 140
           MVCQAATQTRFR LKHENGIAGKPTIIVRVIACFQPLQNCQA+YFR LLKPVT
Sbjct: 1   MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQNCQAKYFRQLLKPVT 53

[Close]

BLAST of Carg08072 vs. NCBI nr
Match: PON40251.1 (hypothetical protein PanWU01x14_298860 [Parasponia andersonii] >PON87350.1 hypothetical protein TorRG33x02_168420 [Trema orientalis])

HSP 1 Score: 109.0 bits (271), Expect = 1.3e-20
Identity = 49/53 (92.45%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 87  MVCQAATQTRFRTLKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRHLLKPVT 140
           MVCQAA+QTRFR LKHENGIAG+PTIIVRVIACFQPLQ+CQAEYFRHLLKPVT
Sbjct: 1   MVCQAASQTRFRALKHENGIAGRPTIIVRVIACFQPLQDCQAEYFRHLLKPVT 53

[Close]

BLAST of Carg08072 vs. TAIR10
Match: AT5G50011.1 (conserved peptide upstream open reading frame 37)

HSP 1 Score: 90.9 bits (224), Expect = 6.7e-19
Identity = 43/53 (81.13%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 87  MVCQAATQTRFRTLKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRHLLKPVT 140
           MVCQ+A QTRFRTLKHE+GI G   I+VRVIACFQPLQ+CQAEYFR LLKPVT
Sbjct: 1   MVCQSAGQTRFRTLKHEHGITG--NIVVRVIACFQPLQDCQAEYFRQLLKPVT 51

[Close]

BLAST of Carg08072 vs. TAIR10
Match: AT5G09461.1 (conserved peptide upstream open reading frame 43)

HSP 1 Score: 88.2 bits (217), Expect = 4.4e-18
Identity = 40/54 (74.07%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 87  MVCQAATQTRFRTLKHE-NGIAGKPTIIVRVIACFQPLQNCQAEYFRHLLKPVT 140
           MV Q+A QTRFRT K+E NG + +PTI+VRVIACFQP+ NCQAEYFRH+LKPVT
Sbjct: 1   MVSQSAGQTRFRTFKYENNGDSSRPTIVVRVIACFQPMDNCQAEYFRHILKPVT 54

[Close]

BLAST of Carg08072 vs. TAIR10
Match: AT5G64341.1 (conserved peptide upstream open reading frame 40)

HSP 1 Score: 80.9 bits (198), Expect = 6.9e-16
Identity = 36/53 (67.92%), Postives = 43/53 (81.13%), Query Frame = 0


Query: 87  MVCQAATQTRFRTLKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRHLLKPVT 140
           MVCQ+  +TRFR LK+E G A + TI+VRVI C+QP+ NCQAEYFR LLKPVT
Sbjct: 1   MVCQSPGKTRFRGLKYETGNANESTIVVRVIECYQPMDNCQAEYFRLLLKPVT 53

[Close]

BLAST of Carg08072 vs. TrEMBL
Match: tr|M0RRS1|M0RRS1_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis OX=214687 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.3e-24
Identity = 64/108 (59.26%), Postives = 69/108 (63.89%), Query Frame = 0


Query: 62  MLWLSTSTDVFRKVVHLNLYC------------------------------SEVVMVCQA 121
           M WLS S DV+RKV+ LNLYC                                VVMVCQA
Sbjct: 1   MRWLSLSVDVYRKVISLNLYCRVILIIWLLFLFSFGCILLGSRWTGLVSEERTVVMVCQA 60

Query: 122 ATQTRFRTLKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRHLLKPVT 140
           AT+TRFR LKHENGIAG  TIIVRVIACF+PLQ+CQAEYFRHLLKPVT
Sbjct: 61  ATRTRFRALKHENGIAGSTTIIVRVIACFRPLQDCQAEYFRHLLKPVT 108

[Close]

BLAST of Carg08072 vs. TrEMBL
Match: tr|A0A1S4E0J3|A0A1S4E0J3_CUCME (uncharacterized protein LOC103495379 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103495379 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.3e-21
Identity = 50/53 (94.34%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 87  MVCQAATQTRFRTLKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRHLLKPVT 140
           MVCQAA+QTRFR LKHENGIAGKPTIIV+VIACFQPLQNCQAEYFRHLLKPVT
Sbjct: 1   MVCQAASQTRFRALKHENGIAGKPTIIVKVIACFQPLQNCQAEYFRHLLKPVT 53

[Close]

BLAST of Carg08072 vs. TrEMBL
Match: tr|A0A0A0K458|A0A0A0K458_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G066260 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.3e-21
Identity = 50/53 (94.34%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 87  MVCQAATQTRFRTLKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRHLLKPVT 140
           MVCQAA+QTRFR LKHENGIAGKPTIIV+VIACFQPLQNCQAEYFRHLLKPVT
Sbjct: 1   MVCQAASQTRFRALKHENGIAGKPTIIVKVIACFQPLQNCQAEYFRHLLKPVT 53

[Close]

BLAST of Carg08072 vs. TrEMBL
Match: tr|W9R7U4|W9R7U4_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_011398 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 3.9e-21
Identity = 50/53 (94.34%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 87  MVCQAATQTRFRTLKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRHLLKPVT 140
           MVCQAA+QTRFR LKHENGIAGKPTIIVRVIACFQPLQ+CQAEYFRHLLKPVT
Sbjct: 1   MVCQAASQTRFRALKHENGIAGKPTIIVRVIACFQPLQDCQAEYFRHLLKPVT 53

[Close]

BLAST of Carg08072 vs. TrEMBL
Match: tr|A0A2P5EP76|A0A2P5EP76_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_168420 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 8.7e-21
Identity = 49/53 (92.45%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 87  MVCQAATQTRFRTLKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRHLLKPVT 140
           MVCQAA+QTRFR LKHENGIAG+PTIIVRVIACFQPLQ+CQAEYFRHLLKPVT
Sbjct: 1   MVCQAASQTRFRALKHENGIAGRPTIIVRVIACFQPLQDCQAEYFRHLLKPVT 53

The following BLAST results are available for this feature:

BLAST of Carg08072 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016901746.1	3.5e-21	94.34	PREDICTED: uncharacterized protein LOC103495379 isoform X2 [Cucumis melo] >KGN43...	[more]
EXB57311.1	5.9e-21	94.34	hypothetical protein L484_011398 [Morus notabilis]	[more]
XP_022763666.1	7.7e-21	76.47	uncharacterized protein LOC111309083 [Durio zibethinus]	[more]
KGN53735.1	1.3e-20	94.34	hypothetical protein Csa_4G113180 [Cucumis sativus]	[more]
PON40251.1	1.3e-20	92.45	hypothetical protein PanWU01x14_298860 [Parasponia andersonii] >PON87350.1 hypot...	[more]

BLAST of Carg08072 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G50011.1	6.7e-19	81.13	conserved peptide upstream open reading frame 37	[more]
AT5G09461.1	4.4e-18	74.07	conserved peptide upstream open reading frame 43	[more]
AT5G64341.1	6.9e-16	67.92	conserved peptide upstream open reading frame 40	[more]

BLAST of Carg08072 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg08072 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|M0RRS1\|M0RRS1_MUSAM	1.3e-24	59.26	Uncharacterized protein OS=Musa acuminata subsp. malaccensis OX=214687 PE=4 SV=1	[more]
tr\|A0A1S4E0J3\|A0A1S4E0J3_CUCME	2.3e-21	94.34	uncharacterized protein LOC103495379 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A0A0K458\|A0A0A0K458_CUCSA	2.3e-21	94.34	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G066260 PE=4 SV=1	[more]
tr\|W9R7U4\|W9R7U4_9ROSA	3.9e-21	94.34	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_011398 PE=4 SV=1	[more]
tr\|A0A2P5EP76\|A0A2P5EP76_9ROSA	8.7e-21	92.45	Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_168420 PE=4 S...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg08072-RA	Carg08072-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35281:SF1	CONSERVED PEPTIDE UPSTREAM OPEN READING FRAME 37-RELATED	coord: 87..139
None	No IPR available	PANTHER	PTHR35281	FAMILY NOT NAMED	coord: 87..139

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg08072	Cla001297	Watermelon (97103) v1	carwmB0368
Carg08072	Csa7G066260	Cucumber (Chinese Long) v2	carcuB0411
Carg08072	Csa4G113180	Cucumber (Chinese Long) v2	carcuB0406
Carg08072	MELO3C018592	Melon (DHL92) v3.5.1	carmeB0378
Carg08072	ClCG09G015900	Watermelon (Charleston Gray)	carwcgB0364
Carg08072	CmoCh11G014760	Cucurbita moschata (Rifu)	carcmoB0508
Carg08072	CmoCh04G004230	Cucurbita moschata (Rifu)	carcmoB0514
Carg08072	CsGy4G009250	Cucumber (Gy14) v2	carcgybB0386
Carg08072	CsaV3_7G007020	Cucumber (Chinese Long) v3	carcucB0413
Carg08072	Cla97C10G192610	Watermelon (97103) v2	carwmbB0392
Carg08072	Bhi11G000860	Wax gourd	carwgoB0456

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg08072	Silver-seed gourd	carcarB324
Carg08072	Silver-seed gourd	carcarB406
Carg08072	Silver-seed gourd	carcarB407
Carg08072	Cucumber (Gy14) v2	carcgybB0382
Carg08072	Cucumber (Gy14) v2	carcgybB0384
Carg08072	Cucumber (Gy14) v1	carcgyB0431
Carg08072	Cucumber (Gy14) v1	carcgyB0441
Carg08072	Cucurbita maxima (Rimu)	carcmaB0526
Carg08072	Cucurbita maxima (Rimu)	carcmaB0529
Carg08072	Cucurbita moschata (Rifu)	carcmoB0509
Carg08072	Cucurbita moschata (Rifu)	carcmoB0511
Carg08072	Cucurbita pepo (Zucchini)	carcpeB0523
Carg08072	Cucurbita pepo (Zucchini)	carcpeB0525
Carg08072	Cucurbita pepo (Zucchini)	carcpeB0527
Carg08072	Wild cucumber (PI 183967)	carcpiB0408
Carg08072	Wild cucumber (PI 183967)	carcpiB0409
Carg08072	Wild cucumber (PI 183967)	carcpiB0411
Carg08072	Cucumber (Chinese Long) v2	carcuB0403
Carg08072	Cucumber (Chinese Long) v2	carcuB0404
Carg08072	Cucumber (Chinese Long) v3	carcucB0405
Carg08072	Cucumber (Chinese Long) v3	carcucB0407
Carg08072	Cucumber (Chinese Long) v3	carcucB0409
Carg08072	Bottle gourd (USVL1VR-Ls)	carlsiB341
Carg08072	Melon (DHL92) v3.5.1	carmeB0384
Carg08072	Melon (DHL92) v3.6.1	carmedB0388
Carg08072	Watermelon (Charleston Gray)	carwcgB0365
Carg08072	Watermelon (Charleston Gray)	carwcgB0373
Carg08072	Watermelon (97103) v1	carwmB0366
Carg08072	Watermelon (97103) v1	carwmB0369
Carg08072	Watermelon (97103) v2	carwmbB0391
Carg08072	Watermelon (97103) v2	carwmbB0400
Carg08072	Wax gourd	carwgoB0460