Lsi03G007250 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi03G007250
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Conserved peptide upstream open reading frame 37
Location	chr03 : 9757501 .. 9758465 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTGCAAAGTTGGTTATGATGCTTAGCTCAGAGATTGAGACTACTGATGTTTCATCTCATATGTTTGGATATAGCTAGCTTCTTATTTCCTTTTTTGTATTCTTAATTTTATTGGTCGGTAATTTGGTGGTGTGGTGGAGGTTTTAATACTGAACAATCGATTGCTATCTTGATTTTGTGCAGGTAAAATACGGAAGTGACTGTAAACAAGTACTTGGGGATAAAAGGAACTATATAGGAACAATATGCCTTGGTTGAGTTCTACTGTCGACATGTTTCACAAAGTTGTGCGCCTGAAAATATGTTGTTGGGTTATATTATAAATCATTTCTCGTCCCATTCAACCTTTCCTACTTCAGTTATTATCTGCTTCATATCATCTAACCATGGGATCCAATCACTTTTTTATTATTGCCTCTGATATATACATCAGCTGAAGCCAATATACTGTCTCAATTCTGTCTTAGGCTTCAGTTTTATGTTCCAATTTTAGGACTCCAAGCTATTGTTCATCTTAGTCCACTTAAGATTATCGGATTCTCTACTTTTGTTCCGTTCCCCTGTGTTATGTTTGATGGTTGGTGTACTCTGAACTTTGGCAAACCTATTTGGCCTTTGTTTCATCGTGTAGTCCCTTCTGTCTCACATCATTTTCATCCTTCAGCATAGTAAAGGGTTAAAAGTAGTTATGGTGTGCCAAGCAGCAAGTCAAACACGATTTCGGGCTTTGAAACATGAAAATGGGATTGCAGGGAAGCTAACAATTATTGTTAAAGTGATTGCATGTTTTCAACCTTTGCAGAATTGCCAGGTATACACAGCTTGATTTCTCTGTATTTTATATTCATGGTCAATTAATTTGTGTCACTGAAGATCATTGACTCCTGGAAATATATGGTTAATGTTGCTGTGGTTTTTTCCCCCAGGCTGAGTACTTCCGTCACTTGCTCAAACCTGTCACGTAG

mRNA sequence

GCTGCAAAGTTGGTTATGATGCTTAGCTCAGAGATTGAGACTACTGATGTAAAATACGGAAGTGACTGTAAACAACATAGTAAAGGGTTAAAAGTAGTTATGGTGTGCCAAGCAGCAAGTCAAACACGATTTCGGGCTTTGAAACATGAAAATGGGATTGCAGGGAAGCTAACAATTATTGTTAAAGTGATTGCATGTTTTCAACCTTTGCAGAATTGCCAGGCTGAGTACTTCCGTCACTTGCTCAAACCTGTCACGTAG

Coding sequence (CDS)

GCTGCAAAGTTGGTTATGATGCTTAGCTCAGAGATTGAGACTACTGATGTAAAATACGGAAGTGACTGTAAACAACATAGTAAAGGGTTAAAAGTAGTTATGGTGTGCCAAGCAGCAAGTCAAACACGATTTCGGGCTTTGAAACATGAAAATGGGATTGCAGGGAAGCTAACAATTATTGTTAAAGTGATTGCATGTTTTCAACCTTTGCAGAATTGCCAGGCTGAGTACTTCCGTCACTTGCTCAAACCTGTCACGTAG

Protein sequence

AAKLVMMLSSEIETTDVKYGSDCKQHSKGLKVVMVCQAASQTRFRALKHENGIAGKLTIIVKVIACFQPLQNCQAEYFRHLLKPVT

Homology

[Close]

BLAST of Lsi03G007250 vs. TrEMBL
Match: A0A0A0K458_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G066260 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.0e-21
Identity = 52/53 (98.11%), Postives = 52/53 (98.11%), Query Frame = 1


Query: 34 MVCQAASQTRFRALKHENGIAGKLTIIVKVIACFQPLQNCQAEYFRHLLKPVT 87
          MVCQAASQTRFRALKHENGIAGK TIIVKVIACFQPLQNCQAEYFRHLLKPVT
Sbjct: 1  MVCQAASQTRFRALKHENGIAGKPTIIVKVIACFQPLQNCQAEYFRHLLKPVT 53

[Close]

BLAST of Lsi03G007250 vs. TrEMBL
Match: W9R7U4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_011398 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 8.5e-21
Identity = 50/53 (94.34%), Postives = 52/53 (98.11%), Query Frame = 1


Query: 34 MVCQAASQTRFRALKHENGIAGKLTIIVKVIACFQPLQNCQAEYFRHLLKPVT 87
          MVCQAASQTRFRALKHENGIAGK TIIV+VIACFQPLQ+CQAEYFRHLLKPVT
Sbjct: 1  MVCQAASQTRFRALKHENGIAGKPTIIVRVIACFQPLQDCQAEYFRHLLKPVT 53

[Close]

BLAST of Lsi03G007250 vs. TrEMBL
Match: A0A0B2R2I1_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_019446 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.4e-20
Identity = 50/56 (89.29%), Postives = 52/56 (92.86%), Query Frame = 1


Query: 31 KVVMVCQAASQTRFRALKHENGIAGKLTIIVKVIACFQPLQNCQAEYFRHLLKPVT 87
          KVVMVCQAASQTRFRALKHENG AG  TIIV+VIACFQPL +CQAEYFRHLLKPVT
Sbjct: 29 KVVMVCQAASQTRFRALKHENGYAGSSTIIVRVIACFQPLTDCQAEYFRHLLKPVT 84

[Close]

BLAST of Lsi03G007250 vs. TrEMBL
Match: F6H111_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g07210 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.9e-20
Identity = 49/53 (92.45%), Postives = 51/53 (96.23%), Query Frame = 1


Query: 34 MVCQAASQTRFRALKHENGIAGKLTIIVKVIACFQPLQNCQAEYFRHLLKPVT 87
          MVCQAASQTRFRALKHENGIAG  TIIV+VIACFQPLQ+CQAEYFRHLLKPVT
Sbjct: 1  MVCQAASQTRFRALKHENGIAGSATIIVRVIACFQPLQDCQAEYFRHLLKPVT 53

[Close]

BLAST of Lsi03G007250 vs. TrEMBL
Match: A0A103XZG1_CYNCS (Myc-type, basic helix-loop-helix (BHLH) domain-containing protein OS=Cynara cardunculus var. scolymus GN=Ccrd_022059 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 3.2e-20
Identity = 49/56 (87.50%), Postives = 52/56 (92.86%), Query Frame = 1


Query: 31  KVVMVCQAASQTRFRALKHENGIAGKLTIIVKVIACFQPLQNCQAEYFRHLLKPVT 87
           +VVMVCQ+A QTRFRALKHENG AG  TIIVKVIACFQPLQ+CQAEYFRHLLKPVT
Sbjct: 100 EVVMVCQSAGQTRFRALKHENGTAGGATIIVKVIACFQPLQDCQAEYFRHLLKPVT 155

[Close]

BLAST of Lsi03G007250 vs. TAIR10
Match: AT5G50011.1 (AT5G50011.1 conserved peptide upstream open reading frame 37)

HSP 1 Score: 88.6 bits (218), Expect = 2.1e-18
Identity = 41/53 (77.36%), Postives = 46/53 (86.79%), Query Frame = 1


Query: 34 MVCQAASQTRFRALKHENGIAGKLTIIVKVIACFQPLQNCQAEYFRHLLKPVT 87
          MVCQ+A QTRFR LKHE+GI G   I+V+VIACFQPLQ+CQAEYFR LLKPVT
Sbjct: 1  MVCQSAGQTRFRTLKHEHGITGN--IVVRVIACFQPLQDCQAEYFRQLLKPVT 51

[Close]

BLAST of Lsi03G007250 vs. TAIR10
Match: AT5G09461.1 (AT5G09461.1 conserved peptide upstream open reading frame 43)

HSP 1 Score: 81.6 bits (200), Expect = 2.5e-16
Identity = 37/54 (68.52%), Postives = 45/54 (83.33%), Query Frame = 1


Query: 34 MVCQAASQTRFRALKHEN-GIAGKLTIIVKVIACFQPLQNCQAEYFRHLLKPVT 87
          MV Q+A QTRFR  K+EN G + + TI+V+VIACFQP+ NCQAEYFRH+LKPVT
Sbjct: 1  MVSQSAGQTRFRTFKYENNGDSSRPTIVVRVIACFQPMDNCQAEYFRHILKPVT 54

[Close]

BLAST of Lsi03G007250 vs. TAIR10
Match: AT5G64341.1 (AT5G64341.1 conserved peptide upstream open reading frame 40)

HSP 1 Score: 80.5 bits (197), Expect = 5.6e-16
Identity = 35/53 (66.04%), Postives = 43/53 (81.13%), Query Frame = 1


Query: 34 MVCQAASQTRFRALKHENGIAGKLTIIVKVIACFQPLQNCQAEYFRHLLKPVT 87
          MVCQ+  +TRFR LK+E G A + TI+V+VI C+QP+ NCQAEYFR LLKPVT
Sbjct: 1  MVCQSPGKTRFRGLKYETGNANESTIVVRVIECYQPMDNCQAEYFRLLLKPVT 53

[Close]

BLAST of Lsi03G007250 vs. NCBI nr
Match: gi|700188536|gb|KGN43769.1| (hypothetical protein Csa_7G066260 [Cucumis sativus])

HSP 1 Score: 110.5 bits (275), Expect = 1.4e-21
Identity = 52/53 (98.11%), Postives = 52/53 (98.11%), Query Frame = 1


Query: 34 MVCQAASQTRFRALKHENGIAGKLTIIVKVIACFQPLQNCQAEYFRHLLKPVT 87
          MVCQAASQTRFRALKHENGIAGK TIIVKVIACFQPLQNCQAEYFRHLLKPVT
Sbjct: 1  MVCQAASQTRFRALKHENGIAGKPTIIVKVIACFQPLQNCQAEYFRHLLKPVT 53

[Close]

BLAST of Lsi03G007250 vs. NCBI nr
Match: gi|703093100|ref|XP_010094825.1| (hypothetical protein L484_011398 [Morus notabilis])

HSP 1 Score: 107.5 bits (267), Expect = 1.2e-20
Identity = 50/53 (94.34%), Postives = 52/53 (98.11%), Query Frame = 1


Query: 34 MVCQAASQTRFRALKHENGIAGKLTIIVKVIACFQPLQNCQAEYFRHLLKPVT 87
          MVCQAASQTRFRALKHENGIAGK TIIV+VIACFQPLQ+CQAEYFRHLLKPVT
Sbjct: 1  MVCQAASQTRFRALKHENGIAGKPTIIVRVIACFQPLQDCQAEYFRHLLKPVT 53

[Close]

BLAST of Lsi03G007250 vs. NCBI nr
Match: gi|747089596|ref|XP_011092444.1| (PREDICTED: uncharacterized protein LOC105172623 [Sesamum indicum])

HSP 1 Score: 107.1 bits (266), Expect = 1.6e-20
Identity = 49/53 (92.45%), Postives = 52/53 (98.11%), Query Frame = 1


Query: 34 MVCQAASQTRFRALKHENGIAGKLTIIVKVIACFQPLQNCQAEYFRHLLKPVT 87
          MVCQAASQTRFRALKHE+GIAG+ TIIV+VIACFQPLQNCQAEYFRHLLKPVT
Sbjct: 1  MVCQAASQTRFRALKHEHGIAGRTTIIVRVIACFQPLQNCQAEYFRHLLKPVT 53

[Close]

BLAST of Lsi03G007250 vs. NCBI nr
Match: gi|734389114|gb|KHN26122.1| (hypothetical protein glysoja_019446 [Glycine soja])

HSP 1 Score: 106.7 bits (265), Expect = 2.1e-20
Identity = 50/56 (89.29%), Postives = 52/56 (92.86%), Query Frame = 1


Query: 31 KVVMVCQAASQTRFRALKHENGIAGKLTIIVKVIACFQPLQNCQAEYFRHLLKPVT 87
          KVVMVCQAASQTRFRALKHENG AG  TIIV+VIACFQPL +CQAEYFRHLLKPVT
Sbjct: 29 KVVMVCQAASQTRFRALKHENGYAGSSTIIVRVIACFQPLTDCQAEYFRHLLKPVT 84

[Close]

BLAST of Lsi03G007250 vs. NCBI nr
Match: gi|720054120|ref|XP_010272947.1| (PREDICTED: uncharacterized protein LOC104608609 [Nelumbo nucifera])

HSP 1 Score: 106.3 bits (264), Expect = 2.7e-20
Identity = 49/53 (92.45%), Postives = 51/53 (96.23%), Query Frame = 1


Query: 34 MVCQAASQTRFRALKHENGIAGKLTIIVKVIACFQPLQNCQAEYFRHLLKPVT 87
          MVCQAASQTRFRALKHENGIAG  TIIV+VIACFQPLQ+CQAEYFRHLLKPVT
Sbjct: 1  MVCQAASQTRFRALKHENGIAGNATIIVRVIACFQPLQDCQAEYFRHLLKPVT 53

The following BLAST results are available for this feature:

BLAST of Lsi03G007250 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi03G007250 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K458_CUCSA	1.0e-21	98.11	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G066260 PE=4 SV=1	[more]
W9R7U4_9ROSA	8.5e-21	94.34	Uncharacterized protein OS=Morus notabilis GN=L484_011398 PE=4 SV=1	[more]
A0A0B2R2I1_GLYSO	1.4e-20	89.29	Uncharacterized protein OS=Glycine soja GN=glysoja_019446 PE=4 SV=1	[more]
F6H111_VITVI	1.9e-20	92.45	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g07210 PE=4 SV=...	[more]
A0A103XZG1_CYNCS	3.2e-20	87.50	Myc-type, basic helix-loop-helix (BHLH) domain-containing protein OS=Cynara card...	[more]

BLAST of Lsi03G007250 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G50011.1	2.1e-18	77.36	conserved peptide upstream open reading frame 37	[more]
AT5G09461.1	2.5e-16	68.52	conserved peptide upstream open reading frame 43	[more]
AT5G64341.1	5.6e-16	66.04	conserved peptide upstream open reading frame 40	[more]

BLAST of Lsi03G007250 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700188536\|gb\|KGN43769.1\|	1.4e-21	98.11	hypothetical protein Csa_7G066260 [Cucumis sativus]	[more]
gi\|703093100\|ref\|XP_010094825.1\|	1.2e-20	94.34	hypothetical protein L484_011398 [Morus notabilis]	[more]
gi\|747089596\|ref\|XP_011092444.1\|	1.6e-20	92.45	PREDICTED: uncharacterized protein LOC105172623 [Sesamum indicum]	[more]
gi\|734389114\|gb\|KHN26122.1\|	2.1e-20	89.29	hypothetical protein glysoja_019446 [Glycine soja]	[more]
gi\|720054120\|ref\|XP_010272947.1\|	2.7e-20	92.45	PREDICTED: uncharacterized protein LOC104608609 [Nelumbo nucifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0046983	protein dimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G007250.1	Lsi03G007250.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35281	FAMILY NOT NAMED	coord: 35..86 score: 7.5
None	No IPR available	PANTHER	PTHR35281:SF1	CONSERVED PEPTIDE UPSTREAM OPEN READING FRAME 37-RELATED	coord: 35..86 score: 7.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi03G007250	Csa7G066260	Cucumber (Chinese Long) v2	culsiB517
Lsi03G007250	CmaCh11G016600	Cucurbita maxima (Rimu)	cmalsiB117
Lsi03G007250	CmaCh19G004700	Cucurbita maxima (Rimu)	cmalsiB484
Lsi03G007250	CmoCh19G004860	Cucurbita moschata (Rifu)	cmolsiB468
Lsi03G007250	CmoCh11G014760	Cucurbita moschata (Rifu)	cmolsiB104
Lsi03G007250	MELO3C018592	Melon (DHL92) v3.5.1	lsimeB250
Lsi03G007250	ClCG09G015900	Watermelon (Charleston Gray)	lsiwcgB213
Lsi03G007250	MELO3C018591.2	Melon (DHL92) v3.6.1	lsimedB263
Lsi03G007250	Bhi05G000746	Wax gourd	lsiwgoB320
Lsi03G007250	Cp4.1LG04g07130	Cucurbita pepo (Zucchini)	cpelsiB544
Lsi03G007250	Cp4.1LG15g03690	Cucurbita pepo (Zucchini)	cpelsiB208
Lsi03G007250	CsGy7G005720	Cucumber (Gy14) v2	cgyblsiB484
Lsi03G007250	Carg26464	Silver-seed gourd	carlsiB338
Lsi03G007250	CsaV3_7G007020	Cucumber (Chinese Long) v3	cuclsiB551

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi03G007250	Cucumber (Gy14) v1	cgylsiB363
Lsi03G007250	Cucumber (Gy14) v1	cgylsiB367
Lsi03G007250	Wild cucumber (PI 183967)	cpilsiB531
Lsi03G007250	Wild cucumber (PI 183967)	cpilsiB536
Lsi03G007250	Cucumber (Chinese Long) v2	culsiB522
Lsi03G007250	Melon (DHL92) v3.5.1	lsimeB247
Lsi03G007250	Watermelon (Charleston Gray)	lsiwcgB215
Lsi03G007250	Watermelon (97103) v1	lsiwmB231
Lsi03G007250	Watermelon (97103) v1	lsiwmB233
Lsi03G007250	Melon (DHL92) v3.6.1	lsimedB260
Lsi03G007250	Silver-seed gourd	carlsiB262
Lsi03G007250	Cucumber (Chinese Long) v3	cuclsiB555
Lsi03G007250	Watermelon (97103) v2	lsiwmbB248
Lsi03G007250	Watermelon (97103) v2	lsiwmbB251