CsaV3_6G048360 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_6G048360
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr6 : 28378044 .. 28378884 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AATCATATTCATGTATATAAACACACACACTCACACTCATCACAAAACCAAAAAAGCTAAGCCTCCATCTCCCCCCATTCTCAGCGCCTTATATATATAAAAACCTTAACAAAAACCAATCATTTCCCTATGGGTTGGGAAGATATTAGAAAGGATAATCAAGAAGCTGCATCTGTGCTTCTTCATTCCTCTTCCATTGCTTTACTTCAAGAAAGGTTCAGACAACTTCAAAAAGTGAAGGAGATGAGAGAAGAAAAAGAGGTTGTCAAATTGCTTTCTCTCTCTCAATACCCTAAAACGCATACTTGTTGCAGCTTCTTCTTCAATAATACCAATACAAATAGTACAAATACTTGTGTGGTTTTTGAGCCTTCAATTTCAAATAATAACCCTCATCATGAGTTAATGATGACGATGAAGAAGAAGAAGGTACCATCGTCGTCGTCAACAACAACGACAATGCTAACATTGCTGCCTCAAACATCTTTATCTCTTTCTTTAACTTCTTCTTCTTCACACGATCATGATCATCAACAATCCAACAATATCCCCACTTTGATGGATTTATGGCCAGTGCCAGCTTCTAGTACTTCTACAACTTCTTCTTGTGATAGTGCCATCTCATTCATTACTAAACTAAATGATCATGATCATCATGATCACGACCATCATTACTTTGACTCTGATATCGAAGTCGATACTTCTCTTCACTTGTAAACATCACTCTCTCTCTCCTTTTCTCTTCATCGGCTCTATCGTACTAGAGTTGATTATTAATTCATATGATCAGTTATCAGTTTTGTGTTATTGATGATCTACTCTCTCTCATCTTCAATTTATC

mRNA sequence

ATGGGTTGGGAAGATATTAGAAAGGATAATCAAGAAGCTGCATCTGTGCTTCTTCATTCCTCTTCCATTGCTTTACTTCAAGAAAGGTTCAGACAACTTCAAAAAGTGAAGGAGATGAGAGAAGAAAAAGAGGTTGTCAAATTGCTTTCTCTCTCTCAATACCCTAAAACGCATACTTGTTGCAGCTTCTTCTTCAATAATACCAATACAAATAGTACAAATACTTGTGTGGTTTTTGAGCCTTCAATTTCAAATAATAACCCTCATCATGAGTTAATGATGACGATGAAGAAGAAGAAGGTACCATCGTCGTCGTCAACAACAACGACAATGCTAACATTGCTGCCTCAAACATCTTTATCTCTTTCTTTAACTTCTTCTTCTTCACACGATCATGATCATCAACAATCCAACAATATCCCCACTTTGATGGATTTATGGCCAGTGCCAGCTTCTAGTACTTCTACAACTTCTTCTTGTGATAGTGCCATCTCATTCATTACTAAACTAAATGATCATGATCATCATGATCACGACCATCATTACTTTGACTCTGATATCGAAGTCGATACTTCTCTTCACTTGTAA

Coding sequence (CDS)

ATGGGTTGGGAAGATATTAGAAAGGATAATCAAGAAGCTGCATCTGTGCTTCTTCATTCCTCTTCCATTGCTTTACTTCAAGAAAGGTTCAGACAACTTCAAAAAGTGAAGGAGATGAGAGAAGAAAAAGAGGTTGTCAAATTGCTTTCTCTCTCTCAATACCCTAAAACGCATACTTGTTGCAGCTTCTTCTTCAATAATACCAATACAAATAGTACAAATACTTGTGTGGTTTTTGAGCCTTCAATTTCAAATAATAACCCTCATCATGAGTTAATGATGACGATGAAGAAGAAGAAGGTACCATCGTCGTCGTCAACAACAACGACAATGCTAACATTGCTGCCTCAAACATCTTTATCTCTTTCTTTAACTTCTTCTTCTTCACACGATCATGATCATCAACAATCCAACAATATCCCCACTTTGATGGATTTATGGCCAGTGCCAGCTTCTAGTACTTCTACAACTTCTTCTTGTGATAGTGCCATCTCATTCATTACTAAACTAAATGATCATGATCATCATGATCACGACCATCATTACTTTGACTCTGATATCGAAGTCGATACTTCTCTTCACTTGTAA

Protein sequence

MGWEDIRKDNQEAASVLLHSSSIALLQERFRQLQKVKEMREEKEVVKLLSLSQYPKTHTCCSFFFNNTNTNSTNTCVVFEPSISNNNPHHELMMTMKKKKVPSSSSTTTTMLTLLPQTSLSLSLTSSSSHDHDHQQSNNIPTLMDLWPVPASSTSTTSSCDSAISFITKLNDHDHHDHDHHYFDSDIEVDTSLHL

Homology

[Close]

BLAST of CsaV3_6G048360 vs. NCBI nr
Match: KGN49044.1 (hypothetical protein Csa_6G511110 [Cucumis sativus])

HSP 1 Score: 115.2 bits (287), Expect = 2.6e-22
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1  MGWEDIRKDNQEAASVLLHSSSIALLQERFRQLQKVKEMREEKEVVKLLSLSQYPKTHT 60
          MGWEDIRKDNQEAASVLLHSSSIALLQERFRQLQKVKEMREEKEVVKLLSLSQYPKTHT
Sbjct: 1  MGWEDIRKDNQEAASVLLHSSSIALLQERFRQLQKVKEMREEKEVVKLLSLSQYPKTHT 59

[Close]

BLAST of CsaV3_6G048360 vs. TrEMBL
Match: tr|A0A0A0KJS5|A0A0A0KJS5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511110 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.7e-22
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1  MGWEDIRKDNQEAASVLLHSSSIALLQERFRQLQKVKEMREEKEVVKLLSLSQYPKTHT 60
          MGWEDIRKDNQEAASVLLHSSSIALLQERFRQLQKVKEMREEKEVVKLLSLSQYPKTHT
Sbjct: 1  MGWEDIRKDNQEAASVLLHSSSIALLQERFRQLQKVKEMREEKEVVKLLSLSQYPKTHT 59

[Close]

BLAST of CsaV3_6G048360 vs. TrEMBL
Match: tr|A0A2P5ESL9|A0A2P5ESL9_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_156890 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 8.0e-04
Identity = 31/41 (75.61%), Postives = 35/41 (85.37%), Query Frame = 0


Query: 20 SSSIALLQERFRQLQKVKEMREEKEVVKLLSLSQ--YPKTH 59
          SSSIALLQERFRQLQKVKE REEKE++K+LS S+   PK H
Sbjct: 13 SSSIALLQERFRQLQKVKERREEKELMKMLSESERISPKGH 53

[Close]

BLAST of CsaV3_6G048360 vs. TrEMBL
Match: tr|A0A2P5E581|A0A2P5E581_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_002630 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 8.0e-04
Identity = 31/41 (75.61%), Postives = 35/41 (85.37%), Query Frame = 0


Query: 20 SSSIALLQERFRQLQKVKEMREEKEVVKLLSLSQ--YPKTH 59
          SSSIALLQERFRQLQKVKE REEKE++K+LS S+   PK H
Sbjct: 13 SSSIALLQERFRQLQKVKERREEKELMKMLSESEKVSPKGH 53

The following BLAST results are available for this feature:

BLAST of CsaV3_6G048360 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN49044.1	2.6e-22	100.00	hypothetical protein Csa_6G511110 [Cucumis sativus]	[more]

BLAST of CsaV3_6G048360 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G048360 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G048360 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KJS5\|A0A0A0KJS5_CUCSA	1.7e-22	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511110 PE=4 SV=1	[more]
tr\|A0A2P5ESL9\|A0A2P5ESL9_9ROSA	8.0e-04	75.61	Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_156890 PE=4 S...	[more]
tr\|A0A2P5E581\|A0A2P5E581_PARAD	8.0e-04	75.61	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_002630 PE...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G048360.1	CsaV3_6G048360.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 23..43
None	No IPR available	PANTHER	PTHR34570	FAMILY NOT NAMED	coord: 16..195

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_6G048360	CSPI06G32900	Wild cucumber (PI 183967)	cpicucB363
CsaV3_6G048360	Cucsa.044680	Cucumber (Gy14) v1	cgycucB028
CsaV3_6G048360	CmoCh07G003460	Cucurbita moschata (Rifu)	cmocucB1019
CsaV3_6G048360	Cp4.1LG19g08060	Cucurbita pepo (Zucchini)	cpecucB0618
CsaV3_6G048360	Cla014395	Watermelon (97103) v1	cucwmB526
CsaV3_6G048360	MELO3C007445	Melon (DHL92) v3.5.1	cucmeB520
CsaV3_6G048360	ClCG01G021350	Watermelon (Charleston Gray)	cucwcgB455
CsaV3_6G048360	Lsi01G004900	Bottle gourd (USVL1VR-Ls)	cuclsiB462
CsaV3_6G048360	MELO3C007445.2	Melon (DHL92) v3.6.1	cucmedB508
CsaV3_6G048360	Cla97C01G020930	Watermelon (97103) v2	cucwmbB430
CsaV3_6G048360	Bhi03G000511	Wax gourd	cucwgoB648

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_6G048360	Cucumber (Chinese Long) v3	cuccucB053
CsaV3_6G048360	Silver-seed gourd	carcucB0442
CsaV3_6G048360	Silver-seed gourd	carcucB0674
CsaV3_6G048360	Cucumber (Gy14) v2	cgybcucB046
CsaV3_6G048360	Cucumber (Gy14) v2	cgybcucB298
CsaV3_6G048360	Cucurbita maxima (Rimu)	cmacucB0509
CsaV3_6G048360	Cucurbita maxima (Rimu)	cmacucB0809
CsaV3_6G048360	Cucurbita maxima (Rimu)	cmacucB1035
CsaV3_6G048360	Cucurbita moschata (Rifu)	cmocucB0793
CsaV3_6G048360	Cucurbita pepo (Zucchini)	cpecucB0092
CsaV3_6G048360	Cucurbita pepo (Zucchini)	cpecucB0654
CsaV3_6G048360	Wild cucumber (PI 183967)	cpicucB052
CsaV3_6G048360	Bottle gourd (USVL1VR-Ls)	cuclsiB470
CsaV3_6G048360	Watermelon (97103) v2	cucwmbB432