Lsi01G004900 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi01G004900
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Unknown protein
Location	chr01 : 4050212 .. 4050748 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTAGGGAAGATATTATTAGAAAGAATGATGATCAAGAGGCATCTCATGTTGCTGTTCATTCCTCCTCCATTGCTTTACTTCAAGAGAGATTCAGACAACTTGAGAAAATGAAGGAGATGAGAGAAGAAAGAGAGGTTGTGAAATTGCTATCTCTTTCTCAATACCCTAAAACTCATAGCTGCTGCAGCTTCTTCTTCAATAATAATACAAATACTTGTGTCCTTTTTGAGCCTTCTTCAATTTCACATCCTCATCATGATCAGTTAATGATGATGAAGAAGAAGAAGAAGATGATGATCAAGGTACCACCAACAATGTTAACATTGCTGCCTCAAACTTCTTTATCTCTCTCCTTAACTTCTTCTTCTTCAAATCATCAACCCAACAATAATAATATCCCAACTTTGATGGACTTATGGCCACTCCCTACAACTTCTTGTGATAGTGCCATCTCATTCATTACTAAACTAAATGATCATCATCATGATTACTCTGACTCTCATATCGATGTTGATACTTCTCTTCACTTGTAA

mRNA sequence

ATGGGTAGGGAAGATATTATTAGAAAGAATGATGATCAAGAGGCATCTCATGTTGCTGTTCATTCCTCCTCCATTGCTTTACTTCAAGAGAGATTCAGACAACTTGAGAAAATGAAGGAGATGAGAGAAGAAAGAGAGGTTGTGAAATTGCTATCTCTTTCTCAATACCCTAAAACTCATAGCTGCTGCAGCTTCTTCTTCAATAATAATACAAATACTTGTGTCCTTTTTGAGCCTTCTTCAATTTCACATCCTCATCATGATCAGTTAATGATGATGAAGAAGAAGAAGAAGATGATGATCAAGGTACCACCAACAATGTTAACATTGCTGCCTCAAACTTCTTTATCTCTCTCCTTAACTTCTTCTTCTTCAAATCATCAACCCAACAATAATAATATCCCAACTTTGATGGACTTATGGCCACTCCCTACAACTTCTTGTGATAGTGCCATCTCATTCATTACTAAACTAAATGATCATCATCATGATTACTCTGACTCTCATATCGATGTTGATACTTCTCTTCACTTGTAA

Coding sequence (CDS)

ATGGGTAGGGAAGATATTATTAGAAAGAATGATGATCAAGAGGCATCTCATGTTGCTGTTCATTCCTCCTCCATTGCTTTACTTCAAGAGAGATTCAGACAACTTGAGAAAATGAAGGAGATGAGAGAAGAAAGAGAGGTTGTGAAATTGCTATCTCTTTCTCAATACCCTAAAACTCATAGCTGCTGCAGCTTCTTCTTCAATAATAATACAAATACTTGTGTCCTTTTTGAGCCTTCTTCAATTTCACATCCTCATCATGATCAGTTAATGATGATGAAGAAGAAGAAGAAGATGATGATCAAGGTACCACCAACAATGTTAACATTGCTGCCTCAAACTTCTTTATCTCTCTCCTTAACTTCTTCTTCTTCAAATCATCAACCCAACAATAATAATATCCCAACTTTGATGGACTTATGGCCACTCCCTACAACTTCTTGTGATAGTGCCATCTCATTCATTACTAAACTAAATGATCATCATCATGATTACTCTGACTCTCATATCGATGTTGATACTTCTCTTCACTTGTAA

Protein sequence

MGREDIIRKNDDQEASHVAVHSSSIALLQERFRQLEKMKEMREEREVVKLLSLSQYPKTHSCCSFFFNNNTNTCVLFEPSSISHPHHDQLMMMKKKKKMMIKVPPTMLTLLPQTSLSLSLTSSSSNHQPNNNNIPTLMDLWPLPTTSCDSAISFITKLNDHHHDYSDSHIDVDTSLHL

Homology

[Close]

BLAST of Lsi01G004900 vs. TrEMBL
Match: A0A0A0KJS5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511110 PE=4 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 5.8e-56
Identity = 138/198 (69.70%), Postives = 157/198 (79.29%), Query Frame = 1


Query: 1   MGREDIIRKNDDQEASHVAVHSSSIALLQERFRQLEKMKEMREEREVVKLLSLSQYPKTH 60
           MG EDI  + D+QEA+ V +HSSSIALLQERFRQL+K+KEMREE+EVVKLLSLSQYPKTH
Sbjct: 1   MGWEDI--RKDNQEAASVLLHSSSIALLQERFRQLQKVKEMREEKEVVKLLSLSQYPKTH 60

Query: 61  SCCSFFFN----NNTNTCVLFEPS-SISHPHHDQLMMMKKKK-KMMIKVPPTMLTLLPQT 120
           +CCSFFFN    N+TNTCV+FEPS S ++PHH+ +M MKKKK         TMLTLLPQT
Sbjct: 61  TCCSFFFNNTNTNSTNTCVVFEPSISNNNPHHELMMTMKKKKVPSSSSTTTTMLTLLPQT 120

Query: 121 SLSLSLTSSSS---NHQPNNNNIPTLMDLWPLP------TTSCDSAISFITKLNDH-HHD 179
           SLSLSLTSSSS   +HQ  +NNIPTLMDLWP+P      T+SCDSAISFITKLNDH HHD
Sbjct: 121 SLSLSLTSSSSHDHDHQ-QSNNIPTLMDLWPVPASSTSTTSSCDSAISFITKLNDHDHHD 180

[Close]

BLAST of Lsi01G004900 vs. TrEMBL
Match: W9SFE8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_000264 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 4.1e-09
Identity = 68/175 (38.86%), Postives = 88/175 (50.29%), Query Frame = 1


Query: 14  EASHVAVHSSSIALLQERFRQLEKMKEMREEREVVKLLSLSQYPKTHSCCSFFFNNNTNT 73
           + +H  VHSS IALLQERFRQL+++KE+REERE++++LS       ++      NN T  
Sbjct: 7   DQTHAVVHSS-IALLQERFRQLQRVKEVREERELLRILSEHNINNNNN----LMNNPTMI 66

Query: 74  CVLFEPS-----SISHPHHDQLMMMKKKKKMMIKVPPTMLTLLPQTSLSLSLTSSSSNHQ 133
           C   EPS     S  H HH  L+  + +       P   L+L P    S S +       
Sbjct: 67  C---EPSRLVFHSDHHHHHHHLIFPQIRSSP--SAPQVSLSLWPALQCSSSASEDQYYCS 126

Query: 134 PNNNNIPTL-MDLWPLPT---TSCDSAISFITKL-NDHHHDYSDSHIDVDTSLHL 179
             N+  P L M LWPL T        A S  + L +D  HDYS    DVDTSLHL
Sbjct: 127 SINDQTPLLMMKLWPLDTHAPAEFSEASSDKSHLDSDPDHDYS----DVDTSLHL 167

[Close]

BLAST of Lsi01G004900 vs. TrEMBL
Match: W9QDY3_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_010582 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.0e-08
Identity = 63/170 (37.06%), Postives = 84/170 (49.41%), Query Frame = 1


Query: 14  EASHVAVHSSSIALLQERFRQLEKMKEMREEREVVKLLSLSQYPKTHSCCSFFFNNNTNT 73
           + +H  VHSS IALLQERFRQL+++KE+REERE++++LS       ++      NN T  
Sbjct: 7   DQTHAVVHSS-IALLQERFRQLQRVKEVREERELLRILSEHNINNNNN----LMNNPTMI 66

Query: 74  CVLFEPSSISHPHHDQLMMMKKKKKMMIKVPPTMLTLLPQTSLSLSLTSSSSNHQPNNNN 133
           C        S  HH    ++  + +     P   L+L P    S S +         N+ 
Sbjct: 67  CEPLRLVFHSDHHHHHHHLIFPQIRSSPSAPQVSLSLWPALQCSSSASEDQYYCSSINDQ 126

Query: 134 IPTL-MDLWPLPT---TSCDSAISFITKL-NDHHHDYSDSHIDVDTSLHL 179
            P L M LWPL T        A S  + L +D  HDYS    DVDTSLHL
Sbjct: 127 TPLLMMKLWPLDTHAPAEFSEASSDKSHLDSDPDHDYS----DVDTSLHL 167

[Close]

BLAST of Lsi01G004900 vs. TrEMBL
Match: A0A059CF52_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D01438 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.5e-06
Identity = 61/166 (36.75%), Postives = 81/166 (48.80%), Query Frame = 1


Query: 14  EASHVAVHSSSIALLQERFRQLEKMKEMREEREVVKLLSLSQYPKTHSCCSFFFNNNTNT 73
           E++   V  SSIALLQERFRQL+K+KEMREER+ +KLL+                   N+
Sbjct: 5   ESNDPIVIQSSIALLQERFRQLQKVKEMREERQTLKLLT-----------------EPNS 64

Query: 74  CVLFEPSSISHPHHDQLMMMKKKKKMMIKVPPTMLTLLPQTSLSLSLTSSSSNHQPNNNN 133
            VL   +S    H + L       +MM+       +  PQ SLSL  +S S+        
Sbjct: 65  KVLSPTASPPPSHCEPLGFFFHHPEMMVNNIYPACSSPPQLSLSLWPSSRSNYSHLRFGE 124

Query: 134 IPTLM-DLWPLPTTSCDSAISFITKLNDHHHDYSDSHIDVDTSLHL 179
            P L+  LWP+ TTS   +    TK  ++ H       DVDTSLHL
Sbjct: 125 TPALVTSLWPVETTSLRVS---STKYKEYDH-----FDDVDTSLHL 145

[Close]

BLAST of Lsi01G004900 vs. NCBI nr
Match: gi|700193840|gb|KGN49044.1| (hypothetical protein Csa_6G511110 [Cucumis sativus])

HSP 1 Score: 225.3 bits (573), Expect = 8.3e-56
Identity = 138/198 (69.70%), Postives = 157/198 (79.29%), Query Frame = 1


Query: 1   MGREDIIRKNDDQEASHVAVHSSSIALLQERFRQLEKMKEMREEREVVKLLSLSQYPKTH 60
           MG EDI  + D+QEA+ V +HSSSIALLQERFRQL+K+KEMREE+EVVKLLSLSQYPKTH
Sbjct: 1   MGWEDI--RKDNQEAASVLLHSSSIALLQERFRQLQKVKEMREEKEVVKLLSLSQYPKTH 60

Query: 61  SCCSFFFN----NNTNTCVLFEPS-SISHPHHDQLMMMKKKK-KMMIKVPPTMLTLLPQT 120
           +CCSFFFN    N+TNTCV+FEPS S ++PHH+ +M MKKKK         TMLTLLPQT
Sbjct: 61  TCCSFFFNNTNTNSTNTCVVFEPSISNNNPHHELMMTMKKKKVPSSSSTTTTMLTLLPQT 120

Query: 121 SLSLSLTSSSS---NHQPNNNNIPTLMDLWPLP------TTSCDSAISFITKLNDH-HHD 179
           SLSLSLTSSSS   +HQ  +NNIPTLMDLWP+P      T+SCDSAISFITKLNDH HHD
Sbjct: 121 SLSLSLTSSSSHDHDHQ-QSNNIPTLMDLWPVPASSTSTTSSCDSAISFITKLNDHDHHD 180

[Close]

BLAST of Lsi01G004900 vs. NCBI nr
Match: gi|1009107295|ref|XP_015878993.1| (PREDICTED: uncharacterized protein LOC107415217 [Ziziphus jujuba])

HSP 1 Score: 71.2 bits (173), Expect = 2.0e-09
Identity = 63/168 (37.50%), Postives = 87/168 (51.79%), Query Frame = 1


Query: 18  VAVHSSSIALLQERFRQLEKMKEMREEREVVKLLSLSQYPKTHSCCSFFFNNNTNTCVLF 77
           +A+HSS IALLQERFRQL++MKEMRE +E++++L +    +  S      + N N  + F
Sbjct: 9   IAIHSS-IALLQERFRQLQRMKEMREGKELIRMLVVEPNKQKQS------DINLNPTLYF 68

Query: 78  EPSSISHPHHDQLMMMKKKKKMMIKVPPTMLTLLPQTSLSLSLTSSSSNHQPNNNNI--- 137
           EP   S P+ D L              P +  +  Q SLSL     S+ +  +   I   
Sbjct: 69  EPPK-SFPNPDFL-------------TPQIRPISQQDSLSLWQNLRSNMNIEDFRGIEIS 128

Query: 138 ----PTLMDLWPLPTTSCDSAISFITKLNDHHHDYSDSHIDVDTSLHL 179
               PTLM+LWP+  T   S  S  +  N +  + SDS  DVDTSLHL
Sbjct: 129 CCVPPTLMNLWPVNDTPSSSNASSSSSSNIYKFEDSDSDSDVDTSLHL 155

[Close]

BLAST of Lsi01G004900 vs. NCBI nr
Match: gi|703163013|ref|XP_010113201.1| (hypothetical protein L484_000264 [Morus notabilis])

HSP 1 Score: 69.7 bits (169), Expect = 5.8e-09
Identity = 68/175 (38.86%), Postives = 88/175 (50.29%), Query Frame = 1


Query: 14  EASHVAVHSSSIALLQERFRQLEKMKEMREEREVVKLLSLSQYPKTHSCCSFFFNNNTNT 73
           + +H  VHSS IALLQERFRQL+++KE+REERE++++LS       ++      NN T  
Sbjct: 7   DQTHAVVHSS-IALLQERFRQLQRVKEVREERELLRILSEHNINNNNN----LMNNPTMI 66

Query: 74  CVLFEPS-----SISHPHHDQLMMMKKKKKMMIKVPPTMLTLLPQTSLSLSLTSSSSNHQ 133
           C   EPS     S  H HH  L+  + +       P   L+L P    S S +       
Sbjct: 67  C---EPSRLVFHSDHHHHHHHLIFPQIRSSP--SAPQVSLSLWPALQCSSSASEDQYYCS 126

Query: 134 PNNNNIPTL-MDLWPLPT---TSCDSAISFITKL-NDHHHDYSDSHIDVDTSLHL 179
             N+  P L M LWPL T        A S  + L +D  HDYS    DVDTSLHL
Sbjct: 127 SINDQTPLLMMKLWPLDTHAPAEFSEASSDKSHLDSDPDHDYS----DVDTSLHL 167

[Close]

BLAST of Lsi01G004900 vs. NCBI nr
Match: gi|703066129|ref|XP_010087631.1| (hypothetical protein L484_010582 [Morus notabilis])

HSP 1 Score: 67.4 bits (163), Expect = 2.9e-08
Identity = 63/170 (37.06%), Postives = 84/170 (49.41%), Query Frame = 1


Query: 14  EASHVAVHSSSIALLQERFRQLEKMKEMREEREVVKLLSLSQYPKTHSCCSFFFNNNTNT 73
           + +H  VHSS IALLQERFRQL+++KE+REERE++++LS       ++      NN T  
Sbjct: 7   DQTHAVVHSS-IALLQERFRQLQRVKEVREERELLRILSEHNINNNNN----LMNNPTMI 66

Query: 74  CVLFEPSSISHPHHDQLMMMKKKKKMMIKVPPTMLTLLPQTSLSLSLTSSSSNHQPNNNN 133
           C        S  HH    ++  + +     P   L+L P    S S +         N+ 
Sbjct: 67  CEPLRLVFHSDHHHHHHHLIFPQIRSSPSAPQVSLSLWPALQCSSSASEDQYYCSSINDQ 126

Query: 134 IPTL-MDLWPLPT---TSCDSAISFITKL-NDHHHDYSDSHIDVDTSLHL 179
            P L M LWPL T        A S  + L +D  HDYS    DVDTSLHL
Sbjct: 127 TPLLMMKLWPLDTHAPAEFSEASSDKSHLDSDPDHDYS----DVDTSLHL 167

[Close]

BLAST of Lsi01G004900 vs. NCBI nr
Match: gi|629112138|gb|KCW77098.1| (hypothetical protein EUGRSUZ_D01438 [Eucalyptus grandis])

HSP 1 Score: 60.5 bits (145), Expect = 3.5e-06
Identity = 61/166 (36.75%), Postives = 81/166 (48.80%), Query Frame = 1


Query: 14  EASHVAVHSSSIALLQERFRQLEKMKEMREEREVVKLLSLSQYPKTHSCCSFFFNNNTNT 73
           E++   V  SSIALLQERFRQL+K+KEMREER+ +KLL+                   N+
Sbjct: 5   ESNDPIVIQSSIALLQERFRQLQKVKEMREERQTLKLLT-----------------EPNS 64

Query: 74  CVLFEPSSISHPHHDQLMMMKKKKKMMIKVPPTMLTLLPQTSLSLSLTSSSSNHQPNNNN 133
            VL   +S    H + L       +MM+       +  PQ SLSL  +S S+        
Sbjct: 65  KVLSPTASPPPSHCEPLGFFFHHPEMMVNNIYPACSSPPQLSLSLWPSSRSNYSHLRFGE 124

Query: 134 IPTLM-DLWPLPTTSCDSAISFITKLNDHHHDYSDSHIDVDTSLHL 179
            P L+  LWP+ TTS   +    TK  ++ H       DVDTSLHL
Sbjct: 125 TPALVTSLWPVETTSLRVS---STKYKEYDH-----FDDVDTSLHL 145

The following BLAST results are available for this feature:

BLAST of Lsi01G004900 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi01G004900 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJS5_CUCSA	5.8e-56	69.70	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511110 PE=4 SV=1	[more]
W9SFE8_9ROSA	4.1e-09	38.86	Uncharacterized protein OS=Morus notabilis GN=L484_000264 PE=4 SV=1	[more]
W9QDY3_9ROSA	2.0e-08	37.06	Uncharacterized protein OS=Morus notabilis GN=L484_010582 PE=4 SV=1	[more]
A0A059CF52_EUCGR	2.5e-06	36.75	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D01438 PE=4 SV=1	[more]

BLAST of Lsi01G004900 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi01G004900 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700193840\|gb\|KGN49044.1\|	8.3e-56	69.70	hypothetical protein Csa_6G511110 [Cucumis sativus]	[more]
gi\|1009107295\|ref\|XP_015878993.1\|	2.0e-09	37.50	PREDICTED: uncharacterized protein LOC107415217 [Ziziphus jujuba]	[more]
gi\|703163013\|ref\|XP_010113201.1\|	5.8e-09	38.86	hypothetical protein L484_000264 [Morus notabilis]	[more]
gi\|703066129\|ref\|XP_010087631.1\|	2.9e-08	37.06	hypothetical protein L484_010582 [Morus notabilis]	[more]
gi\|629112138\|gb\|KCW77098.1\|	3.5e-06	36.75	hypothetical protein EUGRSUZ_D01438 [Eucalyptus grandis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G004900.1	Lsi01G004900.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 25..45 scor
None	No IPR available	PANTHER	PTHR34570	FAMILY NOT NAMED	coord: 107..178 score: 1.6E-21coord: 18..85 score: 1.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi01G004900	Csa6G511110	Cucumber (Chinese Long) v2	culsiB434
Lsi01G004900	CSPI06G32900	Wild cucumber (PI 183967)	cpilsiB439
Lsi01G004900	Cucsa.044680	Cucumber (Gy14) v1	cgylsiB022
Lsi01G004900	Cla014395	Watermelon (97103) v1	lsiwmB144
Lsi01G004900	MELO3C007445	Melon (DHL92) v3.5.1	lsimeB149
Lsi01G004900	ClCG01G021350	Watermelon (Charleston Gray)	lsiwcgB127
Lsi01G004900	CsaV3_6G048360	Cucumber (Chinese Long) v3	cuclsiB462

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi01G004900	Wax gourd	lsiwgoB168
Lsi01G004900	Bottle gourd (USVL1VR-Ls)	lsilsiB064
Lsi01G004900	Cucurbita maxima (Rimu)	cmalsiB367
Lsi01G004900	Cucurbita maxima (Rimu)	cmalsiB517
Lsi01G004900	Cucurbita maxima (Rimu)	cmalsiB597
Lsi01G004900	Cucurbita maxima (Rimu)	cmalsiB786
Lsi01G004900	Cucurbita moschata (Rifu)	cmolsiB502
Lsi01G004900	Cucurbita moschata (Rifu)	cmolsiB582
Lsi01G004900	Cucurbita moschata (Rifu)	cmolsiB774
Lsi01G004900	Cucurbita pepo (Zucchini)	cpelsiB054
Lsi01G004900	Cucurbita pepo (Zucchini)	cpelsiB396
Lsi01G004900	Cucurbita pepo (Zucchini)	cpelsiB413
Lsi01G004900	Wild cucumber (PI 183967)	cpilsiB019
Lsi01G004900	Cucumber (Chinese Long) v2	culsiB020
Lsi01G004900	Melon (DHL92) v3.5.1	lsimeB129
Lsi01G004900	Cucumber (Gy14) v2	cgyblsiB014
Lsi01G004900	Cucumber (Gy14) v2	cgyblsiB016
Lsi01G004900	Cucumber (Gy14) v2	cgyblsiB398
Lsi01G004900	Melon (DHL92) v3.6.1	lsimedB156
Lsi01G004900	Silver-seed gourd	carlsiB364
Lsi01G004900	Silver-seed gourd	carlsiB585
Lsi01G004900	Cucumber (Chinese Long) v3	cuclsiB017
Lsi01G004900	Watermelon (97103) v2	lsiwmbB112
Lsi01G004900	Watermelon (97103) v2	lsiwmbB115