Cp4.1LG19g08060 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG19g08060
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Unknown protein
Location	Cp4.1LG19 : 6667867 .. 6668343 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTACGCACCAATCCAACCACCACCCATCTCTTGTCGTTCAATCCTCCATTGCTCTACTTCAAGAGAGATTCAGACAGCTTCAGAAAGTGAAGGAGATGAGAGAGGAGAGAGAGCTTGTACGATTGCTATCACTTTCCAACCCCAAAAAACATGGCTTGTTCAATACTTGTGTGTTGTTTGAACCCTCCGTTGCGACGATGATGATGCTACCGACGACGACAAAGATGTTAACTTTGCCTCAAACGTCTCTATCGCTTTGGCCGACGTCGCCATCACCAGGCAAGAAGCTCACCGTTGGTGTTGATGTTGATGTTGACGTGCCTGCATTGATGAACTTATGGCCGGTGGATAATGTAACTACTAGTACTAGTACTAGTTCGTCTTGTGATAGCGGCATCTCATTGATTAGTAAACTAGAACATGATCATGAGTCTGACTCTGATATCGATGTTGATACTTCTCTTCACTTGTAA

mRNA sequence

ATGGGTACGCACCAATCCAACCACCACCCATCTCTTGTCGTTCAATCCTCCATTGCTCTACTTCAAGAGAGATTCAGACAGCTTCAGAAAGTGAAGGAGATGAGAGAGGAGAGAGAGCTTGTACGATTGCTATCACTTTCCAACCCCAAAAAACATGGCTTGTTCAATACTTGTGTGTTGTTTGAACCCTCCGTTGCGACGATGATGATGCTACCGACGACGACAAAGATGTTAACTTTGCCTCAAACGTCTCTATCGCTTTGGCCGACGTCGCCATCACCAGGCAAGAAGCTCACCGTTGGTGTTGATGTTGATGTTGACGTGCCTGCATTGATGAACTTATGGCCGGTGGATAATGTAACTACTAGTACTAGTACTAGTTCGTCTTGTGATAGCGGCATCTCATTGATTAGTAAACTAGAACATGATCATGAGTCTGACTCTGATATCGATGTTGATACTTCTCTTCACTTGTAA

Coding sequence (CDS)

ATGGGTACGCACCAATCCAACCACCACCCATCTCTTGTCGTTCAATCCTCCATTGCTCTACTTCAAGAGAGATTCAGACAGCTTCAGAAAGTGAAGGAGATGAGAGAGGAGAGAGAGCTTGTACGATTGCTATCACTTTCCAACCCCAAAAAACATGGCTTGTTCAATACTTGTGTGTTGTTTGAACCCTCCGTTGCGACGATGATGATGCTACCGACGACGACAAAGATGTTAACTTTGCCTCAAACGTCTCTATCGCTTTGGCCGACGTCGCCATCACCAGGCAAGAAGCTCACCGTTGGTGTTGATGTTGATGTTGACGTGCCTGCATTGATGAACTTATGGCCGGTGGATAATGTAACTACTAGTACTAGTACTAGTTCGTCTTGTGATAGCGGCATCTCATTGATTAGTAAACTAGAACATGATCATGAGTCTGACTCTGATATCGATGTTGATACTTCTCTTCACTTGTAA

Protein sequence

MGTHQSNHHPSLVVQSSIALLQERFRQLQKVKEMREERELVRLLSLSNPKKHGLFNTCVLFEPSVATMMMLPTTTKMLTLPQTSLSLWPTSPSPGKKLTVGVDVDVDVPALMNLWPVDNVTTSTSTSSSCDSGISLISKLEHDHESDSDIDVDTSLHL

Homology

[Close]

BLAST of Cp4.1LG19g08060 vs. TrEMBL
Match: A0A0A0KJS5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511110 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.5e-23
Identity = 95/184 (51.63%), Postives = 111/184 (60.33%), Query Frame = 1


Query: 12  LVVQSSIALLQERFRQLQKVKEMREERELVRLLSLSN-PKKH------------GLFNTC 71
           L+  SSIALLQERFRQLQKVKEMREE+E+V+LLSLS  PK H               NTC
Sbjct: 17  LLHSSSIALLQERFRQLQKVKEMREEKEVVKLLSLSQYPKTHTCCSFFFNNTNTNSTNTC 76

Query: 72  VLFEPSVAT-------MMML---------PTTTKMLT-LPQTSLSLWPTSPSPGKKLTVG 131
           V+FEPS++        MM +          TTT MLT LPQTSLSL  TS S        
Sbjct: 77  VVFEPSISNNNPHHELMMTMKKKKVPSSSSTTTTMLTLLPQTSLSLSLTSSSSHDH---D 136

Query: 132 VDVDVDVPALMNLWPVDNVTTSTSTSSSCDSGISLISKL-EHDHES------DSDIDVDT 159
                ++P LM+LWPV    +STST+SSCDS IS I+KL +HDH        DSDI+VDT
Sbjct: 137 HQQSNNIPTLMDLWPVP--ASSTSTTSSCDSAISFITKLNDHDHHDHDHHYFDSDIEVDT 195

[Close]

BLAST of Cp4.1LG19g08060 vs. TrEMBL
Match: W9SFE8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_000264 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 6.6e-11
Identity = 67/171 (39.18%), Postives = 87/171 (50.88%), Query Frame = 1


Query: 4   HQSNHHPSLVVQSSIALLQERFRQLQKVKEMREERELVRLLSLSNPKKHG--LFNTCVLF 63
           H   H    VV SSIALLQERFRQLQ+VKE+REEREL+R+LS  N   +   + N  ++ 
Sbjct: 6   HDQTH---AVVHSSIALLQERFRQLQRVKEVREERELLRILSEHNINNNNNLMNNPTMIC 65

Query: 64  EPSVATM----------MMLPTTTKMLTLPQTSLSLWPT---SPSPGKKLTVGVDVDVDV 123
           EPS              ++ P      + PQ SLSLWP    S S  +       ++   
Sbjct: 66  EPSRLVFHSDHHHHHHHLIFPQIRSSPSAPQVSLSLWPALQCSSSASEDQYYCSSINDQT 125

Query: 124 PAL-MNLWPVDNVTTSTSTSSSCDSGISLISKLEHDHESDSDIDVDTSLHL 159
           P L M LWP+D    +  + +S D    L S  +HD+      DVDTSLHL
Sbjct: 126 PLLMMKLWPLDTHAPAEFSEASSDKS-HLDSDPDHDYS-----DVDTSLHL 167

[Close]

BLAST of Cp4.1LG19g08060 vs. TrEMBL
Match: A0A059CF52_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D01438 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.1e-10
Identity = 71/169 (42.01%), Postives = 89/169 (52.66%), Query Frame = 1


Query: 1   MGTHQSNHHPSLVVQSSIALLQERFRQLQKVKEMREERELVRLLSLSN----------PK 60
           MG  +SN    +V+QSSIALLQERFRQLQKVKEMREER+ ++LL+  N          P 
Sbjct: 1   MGIGESND--PIVIQSSIALLQERFRQLQKVKEMREERQTLKLLTEPNSKVLSPTASPPP 60

Query: 61  KHGLFNTCVLFEPSVATMMMLPTTTKMLTLPQTSLSLWPTSPSPGKKLTVGVDVDVDVPA 120
            H          P +    + P  +   + PQ SLSLWP+S S    L  G     + PA
Sbjct: 61  SHCEPLGFFFHHPEMMVNNIYPACS---SPPQLSLSLWPSSRSNYSHLRFG-----ETPA 120

Query: 121 LM-NLWPVDNVTTSTSTSSSCDSGISLISKLEHDHESDSDIDVDTSLHL 159
           L+ +LWPV+  TTS   SS+           E+DH      DVDTSLHL
Sbjct: 121 LVTSLWPVE--TTSLRVSST--------KYKEYDHFD----DVDTSLHL 145

[Close]

BLAST of Cp4.1LG19g08060 vs. TrEMBL
Match: G7IPB5_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_2g026510 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.3e-10
Identity = 64/158 (40.51%), Postives = 82/158 (51.90%), Query Frame = 1


Query: 5   QSNHHPSLVVQSSIALLQERFRQLQKVKEMREERELVRLLSLSNPKKHGLFNTCVLFEPS 64
           + NH P++VV SSIALLQERFRQL++VKEMREEREL ++L   N  K    NT   ++  
Sbjct: 3   RENHDPTIVVHSSIALLQERFRQLERVKEMREERELKKML---NEPKQFNSNTIPSYDYD 62

Query: 65  VATMMMLPTTTKML----TLPQTSLSLWPTSPSPGKKLTVGVDVDVDVPALMNLWPVDNV 124
            +T +       ++    + P  SLSLWPT+       T      +  P  MNL    N 
Sbjct: 63  QSTRLFSSNHELIIPSKSSPPHVSLSLWPTTSQQDDYYT-----SMKSPVSMNLC-TTNY 122

Query: 125 TTSTSTSSSCDSGISLISKLEHDHESDSDIDVDTSLHL 159
           T +  TS           K  HD +S SD  VDTSLHL
Sbjct: 123 TKNLQTS----------WKNGHDCDSPSDSGVDTSLHL 141

[Close]

BLAST of Cp4.1LG19g08060 vs. TrEMBL
Match: W9QDY3_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_010582 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.3e-10
Identity = 66/171 (38.60%), Postives = 86/171 (50.29%), Query Frame = 1


Query: 4   HQSNHHPSLVVQSSIALLQERFRQLQKVKEMREERELVRLLSLSNPKKHG--LFNTCVLF 63
           H   H    VV SSIALLQERFRQLQ+VKE+REEREL+R+LS  N   +   + N  ++ 
Sbjct: 6   HDQTH---AVVHSSIALLQERFRQLQRVKEVREERELLRILSEHNINNNNNLMNNPTMIC 65

Query: 64  EPSVATM----------MMLPTTTKMLTLPQTSLSLWPT---SPSPGKKLTVGVDVDVDV 123
           EP               ++ P      + PQ SLSLWP    S S  +       ++   
Sbjct: 66  EPLRLVFHSDHHHHHHHLIFPQIRSSPSAPQVSLSLWPALQCSSSASEDQYYCSSINDQT 125

Query: 124 PAL-MNLWPVDNVTTSTSTSSSCDSGISLISKLEHDHESDSDIDVDTSLHL 159
           P L M LWP+D    +  + +S D    L S  +HD+      DVDTSLHL
Sbjct: 126 PLLMMKLWPLDTHAPAEFSEASSDKS-HLDSDPDHDYS-----DVDTSLHL 167

[Close]

BLAST of Cp4.1LG19g08060 vs. NCBI nr
Match: gi|700193840|gb|KGN49044.1| (hypothetical protein Csa_6G511110 [Cucumis sativus])

HSP 1 Score: 117.5 bits (293), Expect = 2.2e-23
Identity = 95/184 (51.63%), Postives = 111/184 (60.33%), Query Frame = 1


Query: 12  LVVQSSIALLQERFRQLQKVKEMREERELVRLLSLSN-PKKH------------GLFNTC 71
           L+  SSIALLQERFRQLQKVKEMREE+E+V+LLSLS  PK H               NTC
Sbjct: 17  LLHSSSIALLQERFRQLQKVKEMREEKEVVKLLSLSQYPKTHTCCSFFFNNTNTNSTNTC 76

Query: 72  VLFEPSVAT-------MMML---------PTTTKMLT-LPQTSLSLWPTSPSPGKKLTVG 131
           V+FEPS++        MM +          TTT MLT LPQTSLSL  TS S        
Sbjct: 77  VVFEPSISNNNPHHELMMTMKKKKVPSSSSTTTTMLTLLPQTSLSLSLTSSSSHDH---D 136

Query: 132 VDVDVDVPALMNLWPVDNVTTSTSTSSSCDSGISLISKL-EHDHES------DSDIDVDT 159
                ++P LM+LWPV    +STST+SSCDS IS I+KL +HDH        DSDI+VDT
Sbjct: 137 HQQSNNIPTLMDLWPVP--ASSTSTTSSCDSAISFITKLNDHDHHDHDHHYFDSDIEVDT 195

[Close]

BLAST of Cp4.1LG19g08060 vs. NCBI nr
Match: gi|1009107295|ref|XP_015878993.1| (PREDICTED: uncharacterized protein LOC107415217 [Ziziphus jujuba])

HSP 1 Score: 79.3 bits (194), Expect = 6.5e-12
Identity = 69/160 (43.12%), Postives = 93/160 (58.13%), Query Frame = 1


Query: 9   HPSLVVQSSIALLQERFRQLQKVKEMREERELVRLLSLS-NPKKHG--LFNTCVLFEP-- 68
           H  + + SSIALLQERFRQLQ++KEMRE +EL+R+L +  N +K      N  + FEP  
Sbjct: 6   HNPIAIHSSIALLQERFRQLQRMKEMREGKELIRMLVVEPNKQKQSDINLNPTLYFEPPK 65

Query: 69  SVATMMMLPTTTKMLTLPQTSLSLWPTSPSPGKKLTV----GVDVDVDV-PALMNLWPVD 128
           S      L    + ++  Q SLSLW    S    + +    G+++   V P LMNLWPV+
Sbjct: 66  SFPNPDFLTPQIRPIS-QQDSLSLWQNLRS---NMNIEDFRGIEISCCVPPTLMNLWPVN 125

Query: 129 NVTTSTSTSSSCDSGISLISKLEHDHESDSDIDVDTSLHL 159
           +  +S++ SSS  S    I K E   +SDSD DVDTSLHL
Sbjct: 126 DTPSSSNASSSSSSN---IYKFE---DSDSDSDVDTSLHL 155

[Close]

BLAST of Cp4.1LG19g08060 vs. NCBI nr
Match: gi|703163013|ref|XP_010113201.1| (hypothetical protein L484_000264 [Morus notabilis])

HSP 1 Score: 75.5 bits (184), Expect = 9.4e-11
Identity = 67/171 (39.18%), Postives = 87/171 (50.88%), Query Frame = 1


Query: 4   HQSNHHPSLVVQSSIALLQERFRQLQKVKEMREERELVRLLSLSNPKKHG--LFNTCVLF 63
           H   H    VV SSIALLQERFRQLQ+VKE+REEREL+R+LS  N   +   + N  ++ 
Sbjct: 6   HDQTH---AVVHSSIALLQERFRQLQRVKEVREERELLRILSEHNINNNNNLMNNPTMIC 65

Query: 64  EPSVATM----------MMLPTTTKMLTLPQTSLSLWPT---SPSPGKKLTVGVDVDVDV 123
           EPS              ++ P      + PQ SLSLWP    S S  +       ++   
Sbjct: 66  EPSRLVFHSDHHHHHHHLIFPQIRSSPSAPQVSLSLWPALQCSSSASEDQYYCSSINDQT 125

Query: 124 PAL-MNLWPVDNVTTSTSTSSSCDSGISLISKLEHDHESDSDIDVDTSLHL 159
           P L M LWP+D    +  + +S D    L S  +HD+      DVDTSLHL
Sbjct: 126 PLLMMKLWPLDTHAPAEFSEASSDKS-HLDSDPDHDYS-----DVDTSLHL 167

[Close]

BLAST of Cp4.1LG19g08060 vs. NCBI nr
Match: gi|629112138|gb|KCW77098.1| (hypothetical protein EUGRSUZ_D01438 [Eucalyptus grandis])

HSP 1 Score: 74.7 bits (182), Expect = 1.6e-10
Identity = 71/169 (42.01%), Postives = 89/169 (52.66%), Query Frame = 1


Query: 1   MGTHQSNHHPSLVVQSSIALLQERFRQLQKVKEMREERELVRLLSLSN----------PK 60
           MG  +SN    +V+QSSIALLQERFRQLQKVKEMREER+ ++LL+  N          P 
Sbjct: 1   MGIGESND--PIVIQSSIALLQERFRQLQKVKEMREERQTLKLLTEPNSKVLSPTASPPP 60

Query: 61  KHGLFNTCVLFEPSVATMMMLPTTTKMLTLPQTSLSLWPTSPSPGKKLTVGVDVDVDVPA 120
            H          P +    + P  +   + PQ SLSLWP+S S    L  G     + PA
Sbjct: 61  SHCEPLGFFFHHPEMMVNNIYPACS---SPPQLSLSLWPSSRSNYSHLRFG-----ETPA 120

Query: 121 LM-NLWPVDNVTTSTSTSSSCDSGISLISKLEHDHESDSDIDVDTSLHL 159
           L+ +LWPV+  TTS   SS+           E+DH      DVDTSLHL
Sbjct: 121 LVTSLWPVE--TTSLRVSST--------KYKEYDHFD----DVDTSLHL 145

[Close]

BLAST of Cp4.1LG19g08060 vs. NCBI nr
Match: gi|703066129|ref|XP_010087631.1| (hypothetical protein L484_010582 [Morus notabilis])

HSP 1 Score: 73.2 bits (178), Expect = 4.7e-10
Identity = 66/171 (38.60%), Postives = 86/171 (50.29%), Query Frame = 1


Query: 4   HQSNHHPSLVVQSSIALLQERFRQLQKVKEMREERELVRLLSLSNPKKHG--LFNTCVLF 63
           H   H    VV SSIALLQERFRQLQ+VKE+REEREL+R+LS  N   +   + N  ++ 
Sbjct: 6   HDQTH---AVVHSSIALLQERFRQLQRVKEVREERELLRILSEHNINNNNNLMNNPTMIC 65

Query: 64  EPSVATM----------MMLPTTTKMLTLPQTSLSLWPT---SPSPGKKLTVGVDVDVDV 123
           EP               ++ P      + PQ SLSLWP    S S  +       ++   
Sbjct: 66  EPLRLVFHSDHHHHHHHLIFPQIRSSPSAPQVSLSLWPALQCSSSASEDQYYCSSINDQT 125

Query: 124 PAL-MNLWPVDNVTTSTSTSSSCDSGISLISKLEHDHESDSDIDVDTSLHL 159
           P L M LWP+D    +  + +S D    L S  +HD+      DVDTSLHL
Sbjct: 126 PLLMMKLWPLDTHAPAEFSEASSDKS-HLDSDPDHDYS-----DVDTSLHL 167

The following BLAST results are available for this feature:

BLAST of Cp4.1LG19g08060 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG19g08060 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJS5_CUCSA	1.5e-23	51.63	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511110 PE=4 SV=1	[more]
W9SFE8_9ROSA	6.6e-11	39.18	Uncharacterized protein OS=Morus notabilis GN=L484_000264 PE=4 SV=1	[more]
A0A059CF52_EUCGR	1.1e-10	42.01	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D01438 PE=4 SV=1	[more]
G7IPB5_MEDTR	3.3e-10	40.51	Uncharacterized protein OS=Medicago truncatula GN=MTR_2g026510 PE=4 SV=1	[more]
W9QDY3_9ROSA	3.3e-10	38.60	Uncharacterized protein OS=Morus notabilis GN=L484_010582 PE=4 SV=1	[more]

BLAST of Cp4.1LG19g08060 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG19g08060 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700193840\|gb\|KGN49044.1\|	2.2e-23	51.63	hypothetical protein Csa_6G511110 [Cucumis sativus]	[more]
gi\|1009107295\|ref\|XP_015878993.1\|	6.5e-12	43.13	PREDICTED: uncharacterized protein LOC107415217 [Ziziphus jujuba]	[more]
gi\|703163013\|ref\|XP_010113201.1\|	9.4e-11	39.18	hypothetical protein L484_000264 [Morus notabilis]	[more]
gi\|629112138\|gb\|KCW77098.1\|	1.6e-10	42.01	hypothetical protein EUGRSUZ_D01438 [Eucalyptus grandis]	[more]
gi\|703066129\|ref\|XP_010087631.1\|	4.7e-10	38.60	hypothetical protein L484_010582 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG19g08060.1	Cp4.1LG19g08060.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 18..38 scor
None	No IPR available	PANTHER	PTHR34570	FAMILY NOT NAMED	coord: 3..158 score: 9.0
None	No IPR available	PANTHER	PTHR34570:SF2	SUBFAMILY NOT NAMED	coord: 3..158 score: 9.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG19g08060	CmoCh07G003460	Cucurbita moschata (Rifu)	cmocpeB817
Cp4.1LG19g08060	Cla014395	Watermelon (97103) v1	cpewmB482
Cp4.1LG19g08060	ClCG01G021350	Watermelon (Charleston Gray)	cpewcgB425
Cp4.1LG19g08060	CsaV3_6G048360	Cucumber (Chinese Long) v3	cpecucB0618

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG19g08060	Wax gourd	cpewgoB0607
Cp4.1LG19g08060	Cucurbita pepo (Zucchini)	cpecpeB076
Cp4.1LG19g08060	Cucumber (Gy14) v1	cgycpeB0039
Cp4.1LG19g08060	Cucurbita maxima (Rimu)	cmacpeB671
Cp4.1LG19g08060	Cucurbita maxima (Rimu)	cmacpeB880
Cp4.1LG19g08060	Cucurbita moschata (Rifu)	cmocpeB624
Cp4.1LG19g08060	Wild cucumber (PI 183967)	cpecpiB503
Cp4.1LG19g08060	Cucumber (Chinese Long) v2	cpecuB503
Cp4.1LG19g08060	Bottle gourd (USVL1VR-Ls)	cpelsiB396
Cp4.1LG19g08060	Melon (DHL92) v3.5.1	cpemeB457
Cp4.1LG19g08060	Cucumber (Gy14) v2	cgybcpeB810
Cp4.1LG19g08060	Melon (DHL92) v3.6.1	cpemedB540
Cp4.1LG19g08060	Silver-seed gourd	carcpeB0563
Cp4.1LG19g08060	Silver-seed gourd	carcpeB0915