CmoCh07G003460 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh07G003460
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr07 : 1611682 .. 1612152 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTACGCACCAATCCAACCACCACCCATCTCTTGTCGTTCAATCCTCCATTGCTCTACTTCAAGAGAGATTCAGACAGCTTCAGAAAGTGAAGGAGATGAGAGAGGAGAGAGAGCTTGTACGATTGCTATCACTTTCCAACCCCAAAAAACATGGCTTGTTCAATACTTGTGTGCTGTTTGAACCCTCCGTTGCGACGATGATGATGCTACCTACCACGACGACGACAAAGATGTTAACTTTGCCTCAAACGTCTCTATCGCTTTGGCCGACGTCGCCATCACCAGGCAAGAAGCTCGCCGTTGGTGTTGATGTTGACGTGCCTGCATTGATGAACTTATGGCCGGTGGATAATGTAACTACTAGTACTACTTCGTCTTGTGATAGCGCCATCTCATTGATTAGTAAACTAGAACATGATCATGAGTCTGACTCTAATATCGATGTTGATACTTCTCTTCGCTTGTAA

mRNA sequence

ATGGGTACGCACCAATCCAACCACCACCCATCTCTTGTCGTTCAATCCTCCATTGCTCTACTTCAAGAGAGATTCAGACAGCTTCAGAAAGTGAAGGAGATGAGAGAGGAGAGAGAGCTTGTACGATTGCTATCACTTTCCAACCCCAAAAAACATGGCTTGTTCAATACTTGTGTGCTGTTTGAACCCTCCGTTGCGACGATGATGATGCTACCTACCACGACGACGACAAAGATGTTAACTTTGCCTCAAACGTCTCTATCGCTTTGGCCGACGTCGCCATCACCAGGCAAGAAGCTCGCCGTTGGTGTTGATGTTGACGTGCCTGCATTGATGAACTTATGGCCGGTGGATAATGTAACTACTAGTACTACTTCGTCTTGTGATAGCGCCATCTCATTGATTAGTAAACTAGAACATGATCATGAGTCTGACTCTAATATCGATGTTGATACTTCTCTTCGCTTGTAA

Coding sequence (CDS)

ATGGGTACGCACCAATCCAACCACCACCCATCTCTTGTCGTTCAATCCTCCATTGCTCTACTTCAAGAGAGATTCAGACAGCTTCAGAAAGTGAAGGAGATGAGAGAGGAGAGAGAGCTTGTACGATTGCTATCACTTTCCAACCCCAAAAAACATGGCTTGTTCAATACTTGTGTGCTGTTTGAACCCTCCGTTGCGACGATGATGATGCTACCTACCACGACGACGACAAAGATGTTAACTTTGCCTCAAACGTCTCTATCGCTTTGGCCGACGTCGCCATCACCAGGCAAGAAGCTCGCCGTTGGTGTTGATGTTGACGTGCCTGCATTGATGAACTTATGGCCGGTGGATAATGTAACTACTAGTACTACTTCGTCTTGTGATAGCGCCATCTCATTGATTAGTAAACTAGAACATGATCATGAGTCTGACTCTAATATCGATGTTGATACTTCTCTTCGCTTGTAA
Homology
[Close]
BLAST of CmoCh07G003460 vs. TrEMBL
Match: A0A0A0KJS5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511110 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 2.3e-24
Identity = 92/180 (51.11%), Postives = 111/180 (61.67%), Query Frame = 1 

Query: 12  LVVQSSIALLQERFRQLQKVKEMREERELVRLLSLSN-PKKH------------GLFNTC 71
           L+  SSIALLQERFRQLQKVKEMREE+E+V+LLSLS  PK H               NTC
Sbjct: 17  LLHSSSIALLQERFRQLQKVKEMREEKEVVKLLSLSQYPKTHTCCSFFFNNTNTNSTNTC 76

Query: 72  VLFEPSVAT-------MMML--------PTTTTTKMLTLPQTSLSLWPTSPSPGKKLAVG 131
           V+FEPS++        MM +         +TTTT +  LPQTSLSL  TS S        
Sbjct: 77  VVFEPSISNNNPHHELMMTMKKKKVPSSSSTTTTMLTLLPQTSLSLSLTSSSSHDHDHQQ 136

Query: 132 VDVDVPALMNLWPVDNVTTSTTSSCDSAISLISKL-EHDHES------DSNIDVDTSLRL 157
            + ++P LM+LWPV   +TSTTSSCDSAIS I+KL +HDH        DS+I+VDTSL L
Sbjct: 137 SN-NIPTLMDLWPVPASSTSTTSSCDSAISFITKLNDHDHHDHDHHYFDSDIEVDTSLHL 195

[Close]
BLAST of CmoCh07G003460 vs. TrEMBL
Match: A0A059CF52_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D01438 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 4.2e-10
Identity = 69/167 (41.32%), Postives = 87/167 (52.10%), Query Frame = 1 

Query: 1   MGTHQSNHHPSLVVQSSIALLQERFRQLQKVKEMREERELVRLLSLSN----------PK 60
           MG  +SN    +V+QSSIALLQERFRQLQKVKEMREER+ ++LL+  N          P 
Sbjct: 1   MGIGESND--PIVIQSSIALLQERFRQLQKVKEMREERQTLKLLTEPNSKVLSPTASPPP 60

Query: 61  KHGLFNTCVLFEPSVATMMMLPTTTTTKMLTLPQTSLSLWPTSPSPGKKLAVGVDVDVPA 120
            H          P +    + P  ++      PQ SLSLWP+S S    L  G   + PA
Sbjct: 61  SHCEPLGFFFHHPEMMVNNIYPACSSP-----PQLSLSLWPSSRSNYSHLRFG---ETPA 120

Query: 121 LM-NLWPVDNVTTSTTSSCDSAISLISKLEHDHESDSNIDVDTSLRL 157
           L+ +LWPV+  TTS        +S     E+DH      DVDTSL L
Sbjct: 121 LVTSLWPVE--TTSL------RVSSTKYKEYDHFD----DVDTSLHL 145

[Close]
BLAST of CmoCh07G003460 vs. TrEMBL
Match: W9SFE8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_000264 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.1e-09
Identity = 67/171 (39.18%), Postives = 89/171 (52.05%), Query Frame = 1 

Query: 4   HQSNHHPSLVVQSSIALLQERFRQLQKVKEMREERELVRLLSLSNPKKHG--LFNTCVLF 63
           H   H    VV SSIALLQERFRQLQ+VKE+REEREL+R+LS  N   +   + N  ++ 
Sbjct: 6   HDQTH---AVVHSSIALLQERFRQLQRVKEVREERELLRILSEHNINNNNNLMNNPTMIC 65

Query: 64  EPSVATM----------MMLPTTTTTKMLTLPQTSLSLWP-----TSPSPGKKLAVGVDV 123
           EPS              ++ P   ++   + PQ SLSLWP     +S S  +     ++ 
Sbjct: 66  EPSRLVFHSDHHHHHHHLIFPQIRSSP--SAPQVSLSLWPALQCSSSASEDQYYCSSIND 125

Query: 124 DVPAL-MNLWPVDNVTTSTTSSCDSAISLISKLEHDHESDSNIDVDTSLRL 157
             P L M LWP+D   T   +    A S  S L+ D + D + DVDTSL L
Sbjct: 126 QTPLLMMKLWPLD---THAPAEFSEASSDKSHLDSDPDHDYS-DVDTSLHL 167

[Close]
BLAST of CmoCh07G003460 vs. TrEMBL
Match: G7IPB5_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_2g026510 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.0e-08
Identity = 61/159 (38.36%), Postives = 85/159 (53.46%), Query Frame = 1 

Query: 5   QSNHHPSLVVQSSIALLQERFRQLQKVKEMREERELVRLLSLSNPKKHGLFNTCVLFEPS 64
           + NH P++VV SSIALLQERFRQL++VKEMREEREL ++L   N  K    NT   ++  
Sbjct: 3   RENHDPTIVVHSSIALLQERFRQLERVKEMREERELKKML---NEPKQFNSNTIPSYDYD 62

Query: 65  VATM-------MMLPTTTTTKMLTLPQTSLSLWPTSPSPGKKLAVGVDVDVPALMNLWPV 124
            +T        +++P+ ++      P  SLSLWPT+            +  P  MNL   
Sbjct: 63  QSTRLFSSNHELIIPSKSSP-----PHVSLSLWPTTSQQDDYY---TSMKSPVSMNL--- 122

Query: 125 DNVTTSTTSSCDSAISLISKLEHDHESDSNIDVDTSLRL 157
              TT+ T +  ++     K  HD +S S+  VDTSL L
Sbjct: 123 --CTTNYTKNLQTS----WKNGHDCDSPSDSGVDTSLHL 141

[Close]
BLAST of CmoCh07G003460 vs. TrEMBL
Match: W9QDY3_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_010582 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.0e-08
Identity = 66/171 (38.60%), Postives = 88/171 (51.46%), Query Frame = 1 

Query: 4   HQSNHHPSLVVQSSIALLQERFRQLQKVKEMREERELVRLLSLSNPKKHG--LFNTCVLF 63
           H   H    VV SSIALLQERFRQLQ+VKE+REEREL+R+LS  N   +   + N  ++ 
Sbjct: 6   HDQTH---AVVHSSIALLQERFRQLQRVKEVREERELLRILSEHNINNNNNLMNNPTMIC 65

Query: 64  EPSVATM----------MMLPTTTTTKMLTLPQTSLSLWP-----TSPSPGKKLAVGVDV 123
           EP               ++ P   ++   + PQ SLSLWP     +S S  +     ++ 
Sbjct: 66  EPLRLVFHSDHHHHHHHLIFPQIRSSP--SAPQVSLSLWPALQCSSSASEDQYYCSSIND 125

Query: 124 DVPAL-MNLWPVDNVTTSTTSSCDSAISLISKLEHDHESDSNIDVDTSLRL 157
             P L M LWP+D   T   +    A S  S L+ D + D + DVDTSL L
Sbjct: 126 QTPLLMMKLWPLD---THAPAEFSEASSDKSHLDSDPDHDYS-DVDTSLHL 167

[Close]
BLAST of CmoCh07G003460 vs. NCBI nr
Match: gi|700193840|gb|KGN49044.1| (hypothetical protein Csa_6G511110 [Cucumis sativus])

HSP 1 Score: 120.2 bits (300), Expect = 3.3e-24
Identity = 92/180 (51.11%), Postives = 111/180 (61.67%), Query Frame = 1 

Query: 12  LVVQSSIALLQERFRQLQKVKEMREERELVRLLSLSN-PKKH------------GLFNTC 71
           L+  SSIALLQERFRQLQKVKEMREE+E+V+LLSLS  PK H               NTC
Sbjct: 17  LLHSSSIALLQERFRQLQKVKEMREEKEVVKLLSLSQYPKTHTCCSFFFNNTNTNSTNTC 76

Query: 72  VLFEPSVAT-------MMML--------PTTTTTKMLTLPQTSLSLWPTSPSPGKKLAVG 131
           V+FEPS++        MM +         +TTTT +  LPQTSLSL  TS S        
Sbjct: 77  VVFEPSISNNNPHHELMMTMKKKKVPSSSSTTTTMLTLLPQTSLSLSLTSSSSHDHDHQQ 136

Query: 132 VDVDVPALMNLWPVDNVTTSTTSSCDSAISLISKL-EHDHES------DSNIDVDTSLRL 157
            + ++P LM+LWPV   +TSTTSSCDSAIS I+KL +HDH        DS+I+VDTSL L
Sbjct: 137 SN-NIPTLMDLWPVPASSTSTTSSCDSAISFITKLNDHDHHDHDHHYFDSDIEVDTSLHL 195

[Close]
BLAST of CmoCh07G003460 vs. NCBI nr
Match: gi|1009107295|ref|XP_015878993.1| (PREDICTED: uncharacterized protein LOC107415217 [Ziziphus jujuba])

HSP 1 Score: 73.2 bits (178), Expect = 4.6e-10
Identity = 66/156 (42.31%), Postives = 91/156 (58.33%), Query Frame = 1 

Query: 9   HPSLVVQSSIALLQERFRQLQKVKEMREERELVRLLSLS-NPKKHG--LFNTCVLFEPSV 68
           H  + + SSIALLQERFRQLQ++KEMRE +EL+R+L +  N +K      N  + FEP  
Sbjct: 6   HNPIAIHSSIALLQERFRQLQRMKEMREGKELIRMLVVEPNKQKQSDINLNPTLYFEPPK 65

Query: 69  ATMMMLPTTTTTKMLTL-PQTSLSLWPTSPS-PGKKLAVGVDVDV---PALMNLWPVDNV 128
           +     P   T ++  +  Q SLSLW    S    +   G+++     P LMNLWPV N 
Sbjct: 66  S--FPNPDFLTPQIRPISQQDSLSLWQNLRSNMNIEDFRGIEISCCVPPTLMNLWPV-ND 125

Query: 129 TTSTTSSCDSAISLISKLEHDHESDSNIDVDTSLRL 157
           T S++++  S+ S I K E   +SDS+ DVDTSL L
Sbjct: 126 TPSSSNASSSSSSNIYKFE---DSDSDSDVDTSLHL 155

[Close]
BLAST of CmoCh07G003460 vs. NCBI nr
Match: gi|629112138|gb|KCW77098.1| (hypothetical protein EUGRSUZ_D01438 [Eucalyptus grandis])

HSP 1 Score: 72.8 bits (177), Expect = 6.0e-10
Identity = 69/167 (41.32%), Postives = 87/167 (52.10%), Query Frame = 1 

Query: 1   MGTHQSNHHPSLVVQSSIALLQERFRQLQKVKEMREERELVRLLSLSN----------PK 60
           MG  +SN    +V+QSSIALLQERFRQLQKVKEMREER+ ++LL+  N          P 
Sbjct: 1   MGIGESND--PIVIQSSIALLQERFRQLQKVKEMREERQTLKLLTEPNSKVLSPTASPPP 60

Query: 61  KHGLFNTCVLFEPSVATMMMLPTTTTTKMLTLPQTSLSLWPTSPSPGKKLAVGVDVDVPA 120
            H          P +    + P  ++      PQ SLSLWP+S S    L  G   + PA
Sbjct: 61  SHCEPLGFFFHHPEMMVNNIYPACSSP-----PQLSLSLWPSSRSNYSHLRFG---ETPA 120

Query: 121 LM-NLWPVDNVTTSTTSSCDSAISLISKLEHDHESDSNIDVDTSLRL 157
           L+ +LWPV+  TTS        +S     E+DH      DVDTSL L
Sbjct: 121 LVTSLWPVE--TTSL------RVSSTKYKEYDHFD----DVDTSLHL 145

[Close]
BLAST of CmoCh07G003460 vs. NCBI nr
Match: gi|703163013|ref|XP_010113201.1| (hypothetical protein L484_000264 [Morus notabilis])

HSP 1 Score: 70.5 bits (171), Expect = 3.0e-09
Identity = 67/171 (39.18%), Postives = 89/171 (52.05%), Query Frame = 1 

Query: 4   HQSNHHPSLVVQSSIALLQERFRQLQKVKEMREERELVRLLSLSNPKKHG--LFNTCVLF 63
           H   H    VV SSIALLQERFRQLQ+VKE+REEREL+R+LS  N   +   + N  ++ 
Sbjct: 6   HDQTH---AVVHSSIALLQERFRQLQRVKEVREERELLRILSEHNINNNNNLMNNPTMIC 65

Query: 64  EPSVATM----------MMLPTTTTTKMLTLPQTSLSLWP-----TSPSPGKKLAVGVDV 123
           EPS              ++ P   ++   + PQ SLSLWP     +S S  +     ++ 
Sbjct: 66  EPSRLVFHSDHHHHHHHLIFPQIRSSP--SAPQVSLSLWPALQCSSSASEDQYYCSSIND 125

Query: 124 DVPAL-MNLWPVDNVTTSTTSSCDSAISLISKLEHDHESDSNIDVDTSLRL 157
             P L M LWP+D   T   +    A S  S L+ D + D + DVDTSL L
Sbjct: 126 QTPLLMMKLWPLD---THAPAEFSEASSDKSHLDSDPDHDYS-DVDTSLHL 167

[Close]
BLAST of CmoCh07G003460 vs. NCBI nr
Match: gi|657959208|ref|XP_008371144.1| (PREDICTED: uncharacterized protein LOC103434562 [Malus domestica])

HSP 1 Score: 69.3 bits (168), Expect = 6.7e-09
Identity = 62/150 (41.33%), Postives = 82/150 (54.67%), Query Frame = 1 

Query: 13  VVQSSIALLQERFRQLQKVKEMREERELVRLLSLSN---PKKHGLF--NTCVLFEPSVAT 72
           VV SSIALLQERFR+LQ+VK MREERE+ R+L+LS+   PK+  +   N  +  EP+ A 
Sbjct: 10  VVHSSIALLQERFRELQRVKAMREEREISRMLALSSDSEPKQFTVMNRNPSMHNEPTRAR 69

Query: 73  MMM-LPTTTTTKMLTLPQTSLSLWPTSPSPGKKLAVGVDVDVPALMNLWPVDNVTTSTTS 132
           +   L         +    SLSLWPT  S  +    G   + P L+NLWP    TTS   
Sbjct: 70  LFFHLDHLVHGCGTSASGASLSLWPTLQSKHEDCPHG-KTETPLLINLWPTFRDTTS-LK 129

Query: 133 SCDSAISLISKLEHDHESDSNIDVDTSLRL 157
           +C +          D + +S+ DVDTSL L
Sbjct: 130 TCPNTF-------EDSDPNSDSDVDTSLHL 150

The following BLAST results are available for this feature:
BLAST of CmoCh07G003460 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh07G003460 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KJS5_CUCSA2.3e-2451.11Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511110 PE=4 SV=1[more]
A0A059CF52_EUCGR4.2e-1041.32Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D01438 PE=4 SV=1[more]
W9SFE8_9ROSA2.1e-0939.18Uncharacterized protein OS=Morus notabilis GN=L484_000264 PE=4 SV=1[more]
G7IPB5_MEDTR1.0e-0838.36Uncharacterized protein OS=Medicago truncatula GN=MTR_2g026510 PE=4 SV=1[more]
W9QDY3_9ROSA1.0e-0838.60Uncharacterized protein OS=Morus notabilis GN=L484_010582 PE=4 SV=1[more]
BLAST of CmoCh07G003460 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh07G003460 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700193840|gb|KGN49044.1|3.3e-2451.11hypothetical protein Csa_6G511110 [Cucumis sativus][more]
gi|1009107295|ref|XP_015878993.1|4.6e-1042.31PREDICTED: uncharacterized protein LOC107415217 [Ziziphus jujuba][more]
gi|629112138|gb|KCW77098.1|6.0e-1041.32hypothetical protein EUGRSUZ_D01438 [Eucalyptus grandis][more]
gi|703163013|ref|XP_010113201.1|3.0e-0939.18hypothetical protein L484_000264 [Morus notabilis][more]
gi|657959208|ref|XP_008371144.1|6.7e-0941.33PREDICTED: uncharacterized protein LOC103434562 [Malus domestica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh07G003460.1CmoCh07G003460.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 18..38
scor
NoneNo IPR availablePANTHERPTHR34570FAMILY NOT NAMEDcoord: 3..156
score: 4.7
NoneNo IPR availablePANTHERPTHR34570:SF2SUBFAMILY NOT NAMEDcoord: 3..156
score: 4.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh07G003460Cla014395Watermelon (97103) v1cmowmB816
CmoCh07G003460ClCG01G021350Watermelon (Charleston Gray)cmowcgB755
CmoCh07G003460Cp4.1LG19g08060Cucurbita pepo (Zucchini)cmocpeB817
CmoCh07G003460CsaV3_6G048360Cucumber (Chinese Long) v3cmocucB1019
CmoCh07G003460Bhi03G000511Wax gourdcmowgoB1051
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh07G003460Cucurbita pepo (Zucchini)cmocpeB806
CmoCh07G003460Bottle gourd (USVL1VR-Ls)cmolsiB774
CmoCh07G003460Cucumber (Gy14) v2cgybcmoB843
CmoCh07G003460Melon (DHL92) v3.6.1cmomedB886
CmoCh07G003460Silver-seed gourdcarcmoB0554
CmoCh07G003460Silver-seed gourdcarcmoB0888
CmoCh07G003460Watermelon (97103) v2cmowmbB849
CmoCh07G003460Cucurbita moschata (Rifu)cmocmoB455
CmoCh07G003460Cucumber (Gy14) v1cgycmoB0043
CmoCh07G003460Cucurbita maxima (Rimu)cmacmoB428
CmoCh07G003460Cucurbita maxima (Rimu)cmacmoB667
CmoCh07G003460Cucurbita maxima (Rimu)cmacmoB875
CmoCh07G003460Wild cucumber (PI 183967)cmocpiB873
CmoCh07G003460Cucumber (Chinese Long) v2cmocuB865
CmoCh07G003460Melon (DHL92) v3.5.1cmomeB782