Cla97C01G020930 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C01G020930
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Polyprotein
Location	Cla97Chr01 : 33356919 .. 33357431 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCTTAGAAAGAATGATGAAGAGGCATCTGTTGCTGTTCATTCCTCCTCCATTGCTTTACTTCAAGAGAGATTCAGACAACTACAGAAAATGAAGGAGATGAGAGAAGAAAGAGAGTTTGTGAAATTGCTATCTCTTTCTCAATCCCCTAAAACACATAGCTGCTGCAGCTTCTTCTTCAACAATACAAATACTTGTGTGCTTTTTGAGCCTTCAATTTCACATCCTCATCATGAGTTGATGATGATGAAGAAGAAGAAGAAGAAGAAGGAGGTAGAACCAGCAATCTTAACATTGCTGCCTCAAACATCTCTATCTCTCTCCTTAACTTCTTCAAATGATCAACCCAACAATAATATCCCAACTTTGATGGACTTATGGCCACTGCCTCGTACTACTACTACTAGTACTACAACTTCTTGTGATAGTGCCATCTCTTTTATTACTAAACTAAATGATCATGAATACTCTGACTCTGATATCGGTGTTGATACTTCTCTTCATTTGTAA

mRNA sequence

ATGGGTCTTAGAAAGAATGATGAAGAGGCATCTGTTGCTGTTCATTCCTCCTCCATTGCTTTACTTCAAGAGAGATTCAGACAACTACAGAAAATGAAGGAGATGAGAGAAGAAAGAGAGTTTGTGAAATTGCTATCTCTTTCTCAATCCCCTAAAACACATAGCTGCTGCAGCTTCTTCTTCAACAATACAAATACTTGTGTGCTTTTTGAGCCTTCAATTTCACATCCTCATCATGAGTTGATGATGATGAAGAAGAAGAAGAAGAAGAAGGAGGTAGAACCAGCAATCTTAACATTGCTGCCTCAAACATCTCTATCTCTCTCCTTAACTTCTTCAAATGATCAACCCAACAATAATATCCCAACTTTGATGGACTTATGGCCACTGCCTCGTACTACTACTACTAGTACTACAACTTCTTGTGATAGTGCCATCTCTTTTATTACTAAACTAAATGATCATGAATACTCTGACTCTGATATCGGTGTTGATACTTCTCTTCATTTGTAA

Coding sequence (CDS)

ATGGGTCTTAGAAAGAATGATGAAGAGGCATCTGTTGCTGTTCATTCCTCCTCCATTGCTTTACTTCAAGAGAGATTCAGACAACTACAGAAAATGAAGGAGATGAGAGAAGAAAGAGAGTTTGTGAAATTGCTATCTCTTTCTCAATCCCCTAAAACACATAGCTGCTGCAGCTTCTTCTTCAACAATACAAATACTTGTGTGCTTTTTGAGCCTTCAATTTCACATCCTCATCATGAGTTGATGATGATGAAGAAGAAGAAGAAGAAGAAGGAGGTAGAACCAGCAATCTTAACATTGCTGCCTCAAACATCTCTATCTCTCTCCTTAACTTCTTCAAATGATCAACCCAACAATAATATCCCAACTTTGATGGACTTATGGCCACTGCCTCGTACTACTACTACTAGTACTACAACTTCTTGTGATAGTGCCATCTCTTTTATTACTAAACTAAATGATCATGAATACTCTGACTCTGATATCGGTGTTGATACTTCTCTTCATTTGTAA

Protein sequence

MGLRKNDEEASVAVHSSSIALLQERFRQLQKMKEMREEREFVKLLSLSQSPKTHSCCSFFFNNTNTCVLFEPSISHPHHELMMMKKKKKKKEVEPAILTLLPQTSLSLSLTSSNDQPNNNIPTLMDLWPLPRTTTTSTTTSCDSAISFITKLNDHEYSDSDIGVDTSLHL

Homology

[Close]

BLAST of Cla97C01G020930 vs. NCBI nr
Match: KGN49044.1 (hypothetical protein Csa_6G511110 [Cucumis sativus])

HSP 1 Score: 78.2 bits (191), Expect = 3.0e-11
Identity = 41/52 (78.85%), Postives = 46/52 (88.46%), Query Frame = 0


Query: 4  RKNDEEASVAVHSSSIALLQERFRQLQKMKEMREEREFVKLLSLSQSPKTHS 56
          + N E ASV +HSSSIALLQERFRQLQK+KEMREE+E VKLLSLSQ PKTH+
Sbjct: 8  KDNQEAASVLLHSSSIALLQERFRQLQKVKEMREEKEVVKLLSLSQYPKTHT 59

[Close]

BLAST of Cla97C01G020930 vs. NCBI nr
Match: PON80707.1 (hypothetical protein PanWU01x14_002630 [Parasponia andersonii])

HSP 1 Score: 54.3 bits (129), Expect = 4.7e-04
Identity = 34/56 (60.71%), Postives = 40/56 (71.43%), Query Frame = 0


Query: 1  MGLRKNDEEASVAVHSSSIALLQERFRQLQKMKEMREEREFVKLLSLSQ--SPKTH 55
          MG +  D    V   SSSIALLQERFRQLQK+KE REE+E +K+LS S+  SPK H
Sbjct: 1  MGRQSGDATTKV---SSSIALLQERFRQLQKVKERREEKELMKMLSESEKVSPKGH 53

[Close]

BLAST of Cla97C01G020930 vs. NCBI nr
Match: PON88475.1 (hypothetical protein TorRG33x02_156890 [Trema orientalis])

HSP 1 Score: 54.3 bits (129), Expect = 4.7e-04
Identity = 34/56 (60.71%), Postives = 40/56 (71.43%), Query Frame = 0


Query: 1  MGLRKNDEEASVAVHSSSIALLQERFRQLQKMKEMREEREFVKLLSLSQ--SPKTH 55
          MG +  D    V   SSSIALLQERFRQLQK+KE REE+E +K+LS S+  SPK H
Sbjct: 1  MGRQSGDATTKV---SSSIALLQERFRQLQKVKERREEKELMKMLSESERISPKGH 53

[Close]

BLAST of Cla97C01G020930 vs. NCBI nr
Match: ABF70159.1 (hypothetical protein MA4_112I10.44 [Musa acuminata])

HSP 1 Score: 53.9 bits (128), Expect = 6.1e-04
Identity = 28/56 (50.00%), Postives = 40/56 (71.43%), Query Frame = 0


Query: 1  MGLRKNDEEASVAVHSSSIALLQERFRQLQKMKEMREEREFVKLLSLSQSPKTHSC 57
          MG + ND      V  SSIALLQERFRQLQ++KEMREE++ +++++ ++ PK   C
Sbjct: 1  MGRQSND----TTVRCSSIALLQERFRQLQRIKEMREEKQILRMIAEAEQPKWFFC 52

[Close]

BLAST of Cla97C01G020930 vs. NCBI nr
Match: EXB29524.1 (hypothetical protein L484_010582 [Morus notabilis])

HSP 1 Score: 53.9 bits (128), Expect = 6.1e-04
Identity = 82/173 (47.40%), Postives = 98/173 (56.65%), Query Frame = 0


Query: 4   RKNDEEASVAVHSSSIALLQERFRQLQKMKEMREEREFVKLLSLSQSPKTHSCXXXXXXX 63
           R+  ++    VH SSIALLQERFRQLQ++KE+REERE +++LS          XXXXXXX
Sbjct: 3   REIHDQTHAVVH-SSIALLQERFRQLQRVKEVREERELLRILSEHNXXXXXXXXXXXXXX 62

Query: 64  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAILTLLPQTSLSLSLTSSNDQ-----PN 123
           XXX  XXXXXXXXXXXXXXX              L+L P  +L  S ++S DQ      N
Sbjct: 63  XXXLRXXXXXXXXXXXXXXXFPQIRSSPSAPQVSLSLWP--ALQCSSSASEDQYYCSSIN 122

Query: 124 NNIPTL-MDLWPLPRTTTXXXXXSCDSAISFITKLNDHEYSDSDIGVDTSLHL 171
           +  P L M LWPL  T          S  S +    DH+YSD    VDTSLHL
Sbjct: 123 DQTPLLMMKLWPLD-THAPAEFSEASSDKSHLDSDPDHDYSD----VDTSLHL 167

[Close]

BLAST of Cla97C01G020930 vs. TrEMBL
Match: tr|A0A0A0KJS5|A0A0A0KJS5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511110 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.0e-11
Identity = 41/52 (78.85%), Postives = 46/52 (88.46%), Query Frame = 0


Query: 4  RKNDEEASVAVHSSSIALLQERFRQLQKMKEMREEREFVKLLSLSQSPKTHS 56
          + N E ASV +HSSSIALLQERFRQLQK+KEMREE+E VKLLSLSQ PKTH+
Sbjct: 8  KDNQEAASVLLHSSSIALLQERFRQLQKVKEMREEKEVVKLLSLSQYPKTHT 59

[Close]

BLAST of Cla97C01G020930 vs. TrEMBL
Match: tr|A0A2P5ESL9|A0A2P5ESL9_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_156890 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.1e-04
Identity = 34/56 (60.71%), Postives = 40/56 (71.43%), Query Frame = 0


Query: 1  MGLRKNDEEASVAVHSSSIALLQERFRQLQKMKEMREEREFVKLLSLSQ--SPKTH 55
          MG +  D    V   SSSIALLQERFRQLQK+KE REE+E +K+LS S+  SPK H
Sbjct: 1  MGRQSGDATTKV---SSSIALLQERFRQLQKVKERREEKELMKMLSESERISPKGH 53

[Close]

BLAST of Cla97C01G020930 vs. TrEMBL
Match: tr|A0A2P5E581|A0A2P5E581_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_002630 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.1e-04
Identity = 34/56 (60.71%), Postives = 40/56 (71.43%), Query Frame = 0


Query: 1  MGLRKNDEEASVAVHSSSIALLQERFRQLQKMKEMREEREFVKLLSLSQ--SPKTH 55
          MG +  D    V   SSSIALLQERFRQLQK+KE REE+E +K+LS S+  SPK H
Sbjct: 1  MGRQSGDATTKV---SSSIALLQERFRQLQKVKERREEKELMKMLSESEKVSPKGH 53

[Close]

BLAST of Cla97C01G020930 vs. TrEMBL
Match: tr|W9QDY3|W9QDY3_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_010582 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 4.1e-04
Identity = 82/173 (47.40%), Postives = 98/173 (56.65%), Query Frame = 0


Query: 4   RKNDEEASVAVHSSSIALLQERFRQLQKMKEMREEREFVKLLSLSQSPKTHSCXXXXXXX 63
           R+  ++    VH SSIALLQERFRQLQ++KE+REERE +++LS          XXXXXXX
Sbjct: 3   REIHDQTHAVVH-SSIALLQERFRQLQRVKEVREERELLRILSEHNXXXXXXXXXXXXXX 62

Query: 64  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAILTLLPQTSLSLSLTSSNDQ-----PN 123
           XXX  XXXXXXXXXXXXXXX              L+L P  +L  S ++S DQ      N
Sbjct: 63  XXXLRXXXXXXXXXXXXXXXFPQIRSSPSAPQVSLSLWP--ALQCSSSASEDQYYCSSIN 122

Query: 124 NNIPTL-MDLWPLPRTTTXXXXXSCDSAISFITKLNDHEYSDSDIGVDTSLHL 171
           +  P L M LWPL  T          S  S +    DH+YSD    VDTSLHL
Sbjct: 123 DQTPLLMMKLWPLD-THAPAEFSEASSDKSHLDSDPDHDYSD----VDTSLHL 167

[Close]

BLAST of Cla97C01G020930 vs. TrEMBL
Match: tr|W9SFE8|W9SFE8_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_000264 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 4.1e-04
Identity = 84/173 (48.55%), Postives = 100/173 (57.80%), Query Frame = 0


Query: 4   RKNDEEASVAVHSSSIALLQERFRQLQKMKEMREEREFVKLLSLSQSPKTHSCXXXXXXX 63
           R+  ++    VH SSIALLQERFRQLQ++KE+REERE +++LS          XXXXXXX
Sbjct: 3   REIHDQTHAVVH-SSIALLQERFRQLQRVKEVREERELLRILSEHNXXXXXXXXXXXXXX 62

Query: 64  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAILTLLPQTSLSLSLTSSNDQ-----PN 123
           XXXXXXXXXXXXXXXXXXXX              L+L P  +L  S ++S DQ      N
Sbjct: 63  XXXXXXXXXXXXXXXXXXXXFPQIRSSPSAPQVSLSLWP--ALQCSSSASEDQYYCSSIN 122

Query: 124 NNIPTL-MDLWPLPRTTTXXXXXSCDSAISFITKLNDHEYSDSDIGVDTSLHL 171
           +  P L M LWPL  T          S  S +    DH+YSD    VDTSLHL
Sbjct: 123 DQTPLLMMKLWPLD-THAPAEFSEASSDKSHLDSDPDHDYSD----VDTSLHL 167

The following BLAST results are available for this feature:

BLAST of Cla97C01G020930 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN49044.1	3.0e-11	78.85	hypothetical protein Csa_6G511110 [Cucumis sativus]	[more]
PON80707.1	4.7e-04	60.71	hypothetical protein PanWU01x14_002630 [Parasponia andersonii]	[more]
PON88475.1	4.7e-04	60.71	hypothetical protein TorRG33x02_156890 [Trema orientalis]	[more]
ABF70159.1	6.1e-04	50.00	hypothetical protein MA4_112I10.44 [Musa acuminata]	[more]
EXB29524.1	6.1e-04	47.40	hypothetical protein L484_010582 [Morus notabilis]	[more]

BLAST of Cla97C01G020930 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KJS5\|A0A0A0KJS5_CUCSA	2.0e-11	78.85	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511110 PE=4 SV=1	[more]
tr\|A0A2P5ESL9\|A0A2P5ESL9_9ROSA	3.1e-04	60.71	Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_156890 PE=4 S...	[more]
tr\|A0A2P5E581\|A0A2P5E581_PARAD	3.1e-04	60.71	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_002630 PE...	[more]
tr\|W9QDY3\|W9QDY3_9ROSA	4.1e-04	47.40	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_010582 PE=4 SV=1	[more]
tr\|W9SFE8\|W9SFE8_9ROSA	4.1e-04	48.55	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_000264 PE=4 SV=1	[more]

BLAST of Cla97C01G020930 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C01G020930 vs. TAIR10


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C01G020930.1	Cla97C01G020930.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 19..39
None	No IPR available	PANTHER	PTHR34570	FAMILY NOT NAMED	coord: 8..170

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C01G020930	Cla014395	Watermelon (97103) v1	wmwmbB234
Cla97C01G020930	Csa6G511110	Cucumber (Chinese Long) v2	cuwmbB412
Cla97C01G020930	MELO3C007445	Melon (DHL92) v3.5.1	mewmbB515
Cla97C01G020930	ClCG01G021350	Watermelon (Charleston Gray)	wcgwmbB089
Cla97C01G020930	CSPI06G32900	Wild cucumber (PI 183967)	cpiwmbB433
Cla97C01G020930	Cucsa.044680	Cucumber (Gy14) v1	cgywmbB017
Cla97C01G020930	MELO3C007445.2	Melon (DHL92) v3.6.1	medwmbB507
Cla97C01G020930	CsaV3_6G048360	Cucumber (Chinese Long) v3	cucwmbB430
Cla97C01G020930	Bhi03G000511	Wax gourd	wgowmbB402

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C01G020930	Watermelon (97103) v2	wmbwmbB000
Cla97C01G020930	Silver-seed gourd	carwmbB0426
Cla97C01G020930	Silver-seed gourd	carwmbB0669
Cla97C01G020930	Cucumber (Gy14) v2	cgybwmbB006
Cla97C01G020930	Cucumber (Gy14) v2	cgybwmbB394
Cla97C01G020930	Cucurbita maxima (Rimu)	cmawmbB402
Cla97C01G020930	Cucurbita maxima (Rimu)	cmawmbB670
Cla97C01G020930	Cucurbita maxima (Rimu)	cmawmbB875
Cla97C01G020930	Cucurbita moschata (Rifu)	cmowmbB642
Cla97C01G020930	Cucurbita moschata (Rifu)	cmowmbB849
Cla97C01G020930	Wild cucumber (PI 183967)	cpiwmbB005
Cla97C01G020930	Cucumber (Chinese Long) v2	cuwmbB005
Cla97C01G020930	Bottle gourd (USVL1VR-Ls)	lsiwmbB115
Cla97C01G020930	Bottle gourd (USVL1VR-Ls)	lsiwmbB160
Cla97C01G020930	Melon (DHL92) v3.5.1	mewmbB139