CsaV3_4G037080 (gene) Cucumber (Chinese Long) v3

NameCsaV3_4G037080
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionSerine/arginine repetitive matrix protein
Locationchr4 : 26037877 .. 26040600 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCCTTCCCTTTGCGATCGAGAGAGAGAGAGAGAGAGTTATTGAGCCTACTGGTGTGCCTTCGTGCTAGGGGTTTTCGTTGTTACAGTCCTCCCATGGCGCCTTCAGCTCCGTCAAGCTCAACACCTGAATTTCAAATGTCTAAAAAGCCACTTGGGTTATATGCTAACGCACTAAAACGCAAGGATAGTTTCATTCAGTTGTTGGCCATGACTGGTATTTTGCTTTTAAGCTTTCGATCTTTGGGTCAGAAGTACCGTATCAACGATCTTCAAGAAGACACTACGGCTCTCAAACAAGAACATGAAACCCTAGTTGACCGTATGAAGAACATCAAGCGCAGCCTCCTTCATGAGGCATCCCTCGAATCCACTGGCCACTTTGCATCCAGGCTTCGCCTTCTCTTCAGCGATGAAGATTGACTGCTTTAAGTCTTCAATCTGTGAGTTTCGTAGTGTATTTTCGTCATGCTTCTGCTCTGTACCCAATTGTTAACTCGATTTTTGAAATTTCCCTGCATTTTTGTTGTTGCAGTTTGTAACATTCCAGAATGCTTGGTGAAACTTTTTGTTTACTTGTTTTAATGCAATAAAGAGGTTAATTCAATCTTGGATGAGTTTTTGTTTTGTTCATTGTTTTTTGGTTATTCTGAATTGAATGGTTGAATTTGTTGTTTAAAGCGATACAAATCCCTAAACCCTATTGATTTAGGGTTTTATTGATTGTTCATCTTTCTAATAGACTCTGTTCCCACCGGGCTGCGCATTTATTGTGTATCATCATTCTTACCACTCGGTCATAGATAGAAATGGTAGAGTGAATGGGTGATTATACTTCAAGACTTCGAGCTCTGTAAAAATATGCTAAAAAAACATTGATTAAAAGTACTTTGGATGTTTTTGGAAACTTCCGAGTACCTGTAGGAAATTGTTCTTCCAGGCTGGTTCTTGATGTTTTAACGTCTTGTTTCTTCTTAAGACCCTTTCGACTAGAGATATCAAGAGATGGAAATTACTCTATACGGTTTTCAGGAAGAAATTTTTGTTTAGTTCGATATTGATTTAGATTGATTGATCATAGACAGCATCCCATTTTGTACCCATCTTTAACATTGTGGTTGGACGTCTAGCGGGCAGCATTAAGGTGGGTGTAACACAAGATGCACCTAAGTATTTTCTTGAAAGAATGACAGTTGAGAACAAGTTTGCTACTTGTCAGGAATAGGATGAAATTGTGAAACATCAGGTTTCTTTACCTTCAATTCAAGTATGTATCTGACTAATGTTAAAGCTCCTGGTTGTGTAATTTCTGGGAATTTTTTTGGCGCAAGGATACTACAAAGCTTATGTTGTGCTATTCTTGTGATGTAGGATATATTAATCTATTGTTTGGAGAGCTGCTGCTGATTGAAGAGCTAGACTTTGGGCTCATATCTTCAAAGACATTACTTATAAAACTGATTGTGCCCACCAACTAGCCCAAGGAAAACGCCAAGGGCACAGTTTCATATTCAAGTGATGGATAGTTTTTAGAAAATTTTATAGGGTAGAATAGATGTGCTGATTCTTCAAAAAGTTTCCATCAGTTAGAGAAAAGTTTGTTTTGTGCCCACGTGTTCTATGATGGCTGCACCATTATCCTTGCCTTAAAGAAAAAAAACTCGCAGGAAAAAATACTCACTCTAGGGTGCACCCTATACCCTATGGGACTTGAATGTGGACCACGATGTGCCAAGGTTGTATTACTTGTCTAACCCTATAACATTTGGGTGTCAAGAAAACTTAGTAATTACCTCTTAGCTCTTTATCAAAGTCATGATGGTTAAATTTTCGCTATTTGACGTAGTGCATTTGAGCTAATTCTCTCTAAAGATGTATTGCCTCTTTCTTCACATCACCCATGAGTCACGACCAAGTACAAGAACAATCACAATATAAGCTTTTTTCTGTTTGGACCCAGCTACTTAGGAGCATCATGTATGAACTGATTGGGTGTACCTTCAAACTTATGAGCATCATGTACCATCATCATGTACCACTGCATGCATCACTACACTCAATAAAGCTATTCAACGATCTATTGAGC

mRNA sequence

ATGGCGCCTTCAGCTCCGTCAAGCTCAACACCTGAATTTCAAATGTCTAAAAAGCCACTTGGGTTATATGCTAACGCACTAAAACGCAAGGATAGTTTCATTCAGTTGTTGGCCATGACTGGTATTTTGCTTTTAAGCTTTCGATCTTTGGGTCAGAAGTACCGTATCAACGATCTTCAAGAAGACACTACGGCTCTCAAACAAGAACATGAAACCCTAGTTGACCGTATGAAGAACATCAAGCGCAGCCTCCTTCATGAGGCATCCCTCGAATCCACTGGCCACTTTGCATCCAGGCTTCGCCTTCTCTTCAGCGATGAAGATTGA

Coding sequence (CDS)

ATGGCGCCTTCAGCTCCGTCAAGCTCAACACCTGAATTTCAAATGTCTAAAAAGCCACTTGGGTTATATGCTAACGCACTAAAACGCAAGGATAGTTTCATTCAGTTGTTGGCCATGACTGGTATTTTGCTTTTAAGCTTTCGATCTTTGGGTCAGAAGTACCGTATCAACGATCTTCAAGAAGACACTACGGCTCTCAAACAAGAACATGAAACCCTAGTTGACCGTATGAAGAACATCAAGCGCAGCCTCCTTCATGAGGCATCCCTCGAATCCACTGGCCACTTTGCATCCAGGCTTCGCCTTCTCTTCAGCGATGAAGATTGA

Protein sequence

MAPSAPSSSTPEFQMSKKPLGLYANALKRKDSFIQLLAMTGILLLSFRSLGQKYRINDLQEDTTALKQEHETLVDRMKNIKRSLLHEASLESTGHFASRLRLLFSDED
BLAST of CsaV3_4G037080 vs. NCBI nr
Match: XP_011654256.1 (PREDICTED: uncharacterized protein LOC105435327 [Cucumis sativus] >XP_011654257.1 PREDICTED: uncharacterized protein LOC105435327 [Cucumis sativus] >KGN55481.1 hypothetical protein Csa_4G653420 [Cucumis sativus])

HSP 1 Score: 206.8 bits (525), Expect = 3.6e-50
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0

Query: 1   MAPSAPSSSTPEFQMSKKPLGLYANALKRKDSFIQLLAMTGILLLSFRSLGQKYRINDLQ 60
           MAPSAPSSSTPEFQMSKKPLGLYANALKRKDSFIQLLAMTGILLLSFRSLGQKYRINDLQ
Sbjct: 1   MAPSAPSSSTPEFQMSKKPLGLYANALKRKDSFIQLLAMTGILLLSFRSLGQKYRINDLQ 60

Query: 61  EDTTALKQEHETLVDRMKNIKRSLLHEASLESTGHFASRLRLLFSDED 109
           EDTTALKQEHETLVDRMKNIKRSLLHEASLESTGHFASRLRLLFSDED
Sbjct: 61  EDTTALKQEHETLVDRMKNIKRSLLHEASLESTGHFASRLRLLFSDED 108

BLAST of CsaV3_4G037080 vs. NCBI nr
Match: XP_008452927.1 (PREDICTED: uncharacterized protein LOC103493794 [Cucumis melo] >XP_008452928.1 PREDICTED: uncharacterized protein LOC103493794 [Cucumis melo])

HSP 1 Score: 188.7 bits (478), Expect = 1.0e-44
Identity = 100/108 (92.59%), Postives = 101/108 (93.52%), Query Frame = 0

Query: 1   MAPSAPSSSTPEFQMSKKPLGLYANALKRKDSFIQLLAMTGILLLSFRSLGQKYRINDLQ 60
           MAPSAPSSSTPEFQMSKKPLG YAN LK KD  IQLLAMTGILLLS RSLGQKYRIN+LQ
Sbjct: 1   MAPSAPSSSTPEFQMSKKPLGFYANVLKHKDGLIQLLAMTGILLLSCRSLGQKYRINNLQ 60

Query: 61  EDTTALKQEHETLVDRMKNIKRSLLHEASLESTGHFASRLRLLFSDED 109
           EDTTALKQEHETLVDRMKNIKRSLLHEASLESTG FASRLRLLFSDED
Sbjct: 61  EDTTALKQEHETLVDRMKNIKRSLLHEASLESTGLFASRLRLLFSDED 108

BLAST of CsaV3_4G037080 vs. NCBI nr
Match: XP_022142735.1 (uncharacterized protein LOC111012778 [Momordica charantia] >XP_022142744.1 uncharacterized protein LOC111012778 [Momordica charantia])

HSP 1 Score: 183.3 bits (464), Expect = 4.3e-43
Identity = 94/108 (87.04%), Postives = 101/108 (93.52%), Query Frame = 0

Query: 1   MAPSAPSSSTPEFQMSKKPLGLYANALKRKDSFIQLLAMTGILLLSFRSLGQKYRINDLQ 60
           MAPSAPSSS PEFQ+ KKPLGL+ANALKRKDSFIQ  AMTGI+LLS RSLGQKYRI+DLQ
Sbjct: 1   MAPSAPSSSAPEFQLPKKPLGLFANALKRKDSFIQFFAMTGIMLLSVRSLGQKYRIHDLQ 60

Query: 61  EDTTALKQEHETLVDRMKNIKRSLLHEASLESTGHFASRLRLLFSDED 109
           EDT+ALKQEHETL+DRMKNIKRSLLHEASL+ TG FASRLRLLFSDED
Sbjct: 61  EDTSALKQEHETLIDRMKNIKRSLLHEASLDPTGFFASRLRLLFSDED 108

BLAST of CsaV3_4G037080 vs. NCBI nr
Match: XP_023535555.1 (uncharacterized protein LOC111796960 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 179.1 bits (453), Expect = 8.1e-42
Identity = 94/108 (87.04%), Postives = 99/108 (91.67%), Query Frame = 0

Query: 1   MAPSAPSSSTPEFQMSKKPLGLYANALKRKDSFIQLLAMTGILLLSFRSLGQKYRINDLQ 60
           MAPS+PSSS PEFQM KKPL L+ANALKRKDSFIQ  AMTGILLLS RSLGQKYRI+DLQ
Sbjct: 1   MAPSSPSSSAPEFQMPKKPLSLFANALKRKDSFIQFFAMTGILLLSVRSLGQKYRIHDLQ 60

Query: 61  EDTTALKQEHETLVDRMKNIKRSLLHEASLESTGHFASRLRLLFSDED 109
           EDTTALKQE ETL+DRMKNIKRSLLHEASL+STG FASRLRLLFS ED
Sbjct: 61  EDTTALKQEQETLIDRMKNIKRSLLHEASLDSTGLFASRLRLLFSQED 108

BLAST of CsaV3_4G037080 vs. NCBI nr
Match: XP_022936518.1 (uncharacterized protein LOC111443106 [Cucurbita moschata])

HSP 1 Score: 178.3 bits (451), Expect = 1.4e-41
Identity = 94/108 (87.04%), Postives = 99/108 (91.67%), Query Frame = 0

Query: 1   MAPSAPSSSTPEFQMSKKPLGLYANALKRKDSFIQLLAMTGILLLSFRSLGQKYRINDLQ 60
           MAPS+PSSS PEFQM KKPL L+ANALKRKDSFIQ  AMTGILLLS RSLGQKYRI+DLQ
Sbjct: 1   MAPSSPSSSAPEFQMPKKPLSLFANALKRKDSFIQFFAMTGILLLSVRSLGQKYRIHDLQ 60

Query: 61  EDTTALKQEHETLVDRMKNIKRSLLHEASLESTGHFASRLRLLFSDED 109
           EDTTALKQE ETL+DRMKNIKRSLLHEASL+STG FASRLRLLFS ED
Sbjct: 61  EDTTALKQEQETLMDRMKNIKRSLLHEASLDSTGLFASRLRLLFSQED 108

BLAST of CsaV3_4G037080 vs. TAIR10
Match: AT1G20430.1 (unknown protein)

HSP 1 Score: 110.5 bits (275), Expect = 6.4e-25
Identity = 61/114 (53.51%), Postives = 76/114 (66.67%), Query Frame = 0

Query: 1   MAPSAPSSST-------PEFQMSKKPLGLYANALKRKDSFIQLLAMTGILLLSFRSLGQK 60
           MA SAP  S        P   ++    G + N  K K SF Q  AMTGILLLSFRS+ QK
Sbjct: 1   MASSAPQGSVDPLTGKDPAKALTAVASGFFENVKKNKQSFFQFAAMTGILLLSFRSVSQK 60

Query: 61  YRINDLQEDTTALKQEHETLVDRMKNIKRSLLHEASLESTGHFASRLRLLFSDE 108
           YRI+DL+EDT  LK+E ++L DRM  IK  LLH+AS++S+G FASRLRLLF ++
Sbjct: 61  YRIHDLEEDTAVLKKEQDSLTDRMSKIKSDLLHQASIDSSGVFASRLRLLFGED 114

BLAST of CsaV3_4G037080 vs. TrEMBL
Match: tr|A0A0A0L5S3|A0A0A0L5S3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G653420 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 2.4e-50
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0

Query: 1   MAPSAPSSSTPEFQMSKKPLGLYANALKRKDSFIQLLAMTGILLLSFRSLGQKYRINDLQ 60
           MAPSAPSSSTPEFQMSKKPLGLYANALKRKDSFIQLLAMTGILLLSFRSLGQKYRINDLQ
Sbjct: 1   MAPSAPSSSTPEFQMSKKPLGLYANALKRKDSFIQLLAMTGILLLSFRSLGQKYRINDLQ 60

Query: 61  EDTTALKQEHETLVDRMKNIKRSLLHEASLESTGHFASRLRLLFSDED 109
           EDTTALKQEHETLVDRMKNIKRSLLHEASLESTGHFASRLRLLFSDED
Sbjct: 61  EDTTALKQEHETLVDRMKNIKRSLLHEASLESTGHFASRLRLLFSDED 108

BLAST of CsaV3_4G037080 vs. TrEMBL
Match: tr|A0A1S3BW63|A0A1S3BW63_CUCME (uncharacterized protein LOC103493794 OS=Cucumis melo OX=3656 GN=LOC103493794 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 6.8e-45
Identity = 100/108 (92.59%), Postives = 101/108 (93.52%), Query Frame = 0

Query: 1   MAPSAPSSSTPEFQMSKKPLGLYANALKRKDSFIQLLAMTGILLLSFRSLGQKYRINDLQ 60
           MAPSAPSSSTPEFQMSKKPLG YAN LK KD  IQLLAMTGILLLS RSLGQKYRIN+LQ
Sbjct: 1   MAPSAPSSSTPEFQMSKKPLGFYANVLKHKDGLIQLLAMTGILLLSCRSLGQKYRINNLQ 60

Query: 61  EDTTALKQEHETLVDRMKNIKRSLLHEASLESTGHFASRLRLLFSDED 109
           EDTTALKQEHETLVDRMKNIKRSLLHEASLESTG FASRLRLLFSDED
Sbjct: 61  EDTTALKQEHETLVDRMKNIKRSLLHEASLESTGLFASRLRLLFSDED 108

BLAST of CsaV3_4G037080 vs. TrEMBL
Match: tr|A0A067KL49|A0A067KL49_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_08138 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 2.9e-32
Identity = 78/107 (72.90%), Postives = 88/107 (82.24%), Query Frame = 0

Query: 1   MAPSAPSSSTPEFQMSKKPLGLYANALKRKDSFIQLLAMTGILLLSFRSLGQKYRINDLQ 60
           MA SAP  S    + S+KPLGL ANA+KRKDSFIQL AMTGILLLS RSLGQKYRI+ L+
Sbjct: 1   MASSAPPGSATATRSSRKPLGLIANAMKRKDSFIQLFAMTGILLLSVRSLGQKYRIHGLE 60

Query: 61  EDTTALKQEHETLVDRMKNIKRSLLHEASLESTGHFASRLRLLFSDE 108
           EDT+ALKQE +TL DR+ NIKR LLHEASLE TG FA+RLRLLF D+
Sbjct: 61  EDTSALKQEQQTLTDRLNNIKRGLLHEASLEPTGLFAARLRLLFGDD 107

BLAST of CsaV3_4G037080 vs. TrEMBL
Match: tr|A0A2I4G353|A0A2I4G353_9ROSI (uncharacterized protein LOC109004280 OS=Juglans regia OX=51240 GN=LOC109004280 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.6e-30
Identity = 74/108 (68.52%), Postives = 87/108 (80.56%), Query Frame = 0

Query: 1   MAPSAPSSSTPEFQMSKKPLGLYANALKRKDSFIQLLAMTGILLLSFRSLGQKYRINDLQ 60
           MA SAP  S P  Q  ++ +GL ANA+KRKDSFIQ  AMTGILLLS RSLGQKYRI+DLQ
Sbjct: 1   MASSAPPRSGPGVQNPRRSMGLLANAMKRKDSFIQFFAMTGILLLSLRSLGQKYRIHDLQ 60

Query: 61  EDTTALKQEHETLVDRMKNIKRSLLHEASLESTGHFASRLRLLFSDED 109
           EDT+AL +E +TL +RMKNIKR LLHEASL+ TG  +SRLRLL+ +ED
Sbjct: 61  EDTSALIEERDTLTERMKNIKRDLLHEASLDPTGFLSSRLRLLYGEED 108

BLAST of CsaV3_4G037080 vs. TrEMBL
Match: tr|W9RF20|W9RF20_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_011665 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 6.2e-30
Identity = 74/102 (72.55%), Postives = 83/102 (81.37%), Query Frame = 0

Query: 7   SSSTPEFQMSKKPLGLYANALKRKDSFIQLLAMTGILLLSFRSLGQKYRINDLQEDTTAL 66
           SSS P  +  KKPL   ANA+KRKDSFIQ  AMTGILL+S RSLGQKYRI+DL EDT+ L
Sbjct: 5   SSSAPPGRNPKKPLAFSANAMKRKDSFIQFFAMTGILLMSVRSLGQKYRIHDLLEDTSDL 64

Query: 67  KQEHETLVDRMKNIKRSLLHEASLESTGHFASRLRLLFSDED 109
           K+E E L +RMKNIKR+LLHEASLE TG FASRLRLLF DE+
Sbjct: 65  KEEQEKLTERMKNIKRALLHEASLEPTGAFASRLRLLFGDEN 106

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_011654256.13.6e-50100.00PREDICTED: uncharacterized protein LOC105435327 [Cucumis sativus] >XP_011654257.... [more]
XP_008452927.11.0e-4492.59PREDICTED: uncharacterized protein LOC103493794 [Cucumis melo] >XP_008452928.1 P... [more]
XP_022142735.14.3e-4387.04uncharacterized protein LOC111012778 [Momordica charantia] >XP_022142744.1 uncha... [more]
XP_023535555.18.1e-4287.04uncharacterized protein LOC111796960 [Cucurbita pepo subsp. pepo][more]
XP_022936518.11.4e-4187.04uncharacterized protein LOC111443106 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
AT1G20430.16.4e-2553.51unknown protein[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0L5S3|A0A0A0L5S3_CUCSA2.4e-50100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G653420 PE=4 SV=1[more]
tr|A0A1S3BW63|A0A1S3BW63_CUCME6.8e-4592.59uncharacterized protein LOC103493794 OS=Cucumis melo OX=3656 GN=LOC103493794 PE=... [more]
tr|A0A067KL49|A0A067KL49_JATCU2.9e-3272.90Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_08138 PE=4 SV=1[more]
tr|A0A2I4G353|A0A2I4G353_9ROSI1.6e-3068.52uncharacterized protein LOC109004280 OS=Juglans regia OX=51240 GN=LOC109004280 P... [more]
tr|W9RF20|W9RF20_9ROSA6.2e-3072.55Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_011665 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0005739 mitochondrion
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G037080.1CsaV3_4G037080.1mRNA


Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 56..76
NoneNo IPR availablePANTHERPTHR36316FAMILY NOT NAMEDcoord: 1..107