Cla97C05G096340 (gene) Watermelon (97103) v2

Overview
NameCla97C05G096340
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionCytoplasmic tRNA 2-thiolation protein 1
LocationCla97Chr05 : 25008279 .. 25008605 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGCCTTCAGCTCCGTCAAGCTCAGCCCCTGAATTTCAAATGCGCAAAAAGCCACTTAATTTATTCGCTAACGCACTAAAACGCAAGGACAGCTTCATTCAGTTCTTCGCCATGACTGGTATTTTGCTTCTAAGCTTCCGATCTTTGGGTCAGAAGTACCGTATCCACGACCTTCAAGAGGACACTACGGCTCTCAAACAAGAACAGGAAACCCTAATTGACCGTATGAACAACATCAAGCGCAGCCTCCTTCATGAGGCATCGCTCGACTCCACTGGCCTCTTCGCATCCAGGCTTCGCCTTCTCTTCAGCGAAGAAGATTAA

mRNA sequence

ATGGCGCCTTCAGCTCCGTCAAGCTCAGCCCCTGAATTTCAAATGCGCAAAAAGCCACTTAATTTATTCGCTAACGCACTAAAACGCAAGGACAGCTTCATTCAGTTCTTCGCCATGACTGGTATTTTGCTTCTAAGCTTCCGATCTTTGGGTCAGAAGTACCGTATCCACGACCTTCAAGAGGACACTACGGCTCTCAAACAAGAACAGGAAACCCTAATTGACCGTATGAACAACATCAAGCGCAGCCTCCTTCATGAGGCATCGCTCGACTCCACTGGCCTCTTCGCATCCAGGCTTCGCCTTCTCTTCAGCGAAGAAGATTAA

Coding sequence (CDS)

ATGGCGCCTTCAGCTCCGTCAAGCTCAGCCCCTGAATTTCAAATGCGCAAAAAGCCACTTAATTTATTCGCTAACGCACTAAAACGCAAGGACAGCTTCATTCAGTTCTTCGCCATGACTGGTATTTTGCTTCTAAGCTTCCGATCTTTGGGTCAGAAGTACCGTATCCACGACCTTCAAGAGGACACTACGGCTCTCAAACAAGAACAGGAAACCCTAATTGACCGTATGAACAACATCAAGCGCAGCCTCCTTCATGAGGCATCGCTCGACTCCACTGGCCTCTTCGCATCCAGGCTTCGCCTTCTCTTCAGCGAAGAAGATTAA

Protein sequence

MAPSAPSSSAPEFQMRKKPLNLFANALKRKDSFIQFFAMTGILLLSFRSLGQKYRIHDLQEDTTALKQEQETLIDRMNNIKRSLLHEASLDSTGLFASRLRLLFSEED
Homology
[Close]
BLAST of Cla97C05G096340 vs. NCBI nr
Match: XP_023535555.1 (uncharacterized protein LOC111796960 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 194.1 bits (492), Expect = 2.4e-46
Identity = 102/108 (94.44%), Postives = 105/108 (97.22%), Query Frame = 0 

Query: 1   MAPSAPSSSAPEFQMRKKPLNLFANALKRKDSFIQFFAMTGILLLSFRSLGQKYRIHDLQ 60
           MAPS+PSSSAPEFQM KKPL+LFANALKRKDSFIQFFAMTGILLLS RSLGQKYRIHDLQ
Sbjct: 1   MAPSSPSSSAPEFQMPKKPLSLFANALKRKDSFIQFFAMTGILLLSVRSLGQKYRIHDLQ 60

Query: 61  EDTTALKQEQETLIDRMNNIKRSLLHEASLDSTGLFASRLRLLFSEED 109
           EDTTALKQEQETLIDRM NIKRSLLHEASLDSTGLFASRLRLLFS+ED
Sbjct: 61  EDTTALKQEQETLIDRMKNIKRSLLHEASLDSTGLFASRLRLLFSQED 108

[Close]
BLAST of Cla97C05G096340 vs. NCBI nr
Match: XP_022936518.1 (uncharacterized protein LOC111443106 [Cucurbita moschata])

HSP 1 Score: 193.0 bits (489), Expect = 5.4e-46
Identity = 101/108 (93.52%), Postives = 105/108 (97.22%), Query Frame = 0 

Query: 1   MAPSAPSSSAPEFQMRKKPLNLFANALKRKDSFIQFFAMTGILLLSFRSLGQKYRIHDLQ 60
           MAPS+PSSSAPEFQM KKPL+LFANALKRKDSFIQFFAMTGILLLS RSLGQKYRIHDLQ
Sbjct: 1   MAPSSPSSSAPEFQMPKKPLSLFANALKRKDSFIQFFAMTGILLLSVRSLGQKYRIHDLQ 60

Query: 61  EDTTALKQEQETLIDRMNNIKRSLLHEASLDSTGLFASRLRLLFSEED 109
           EDTTALKQEQETL+DRM NIKRSLLHEASLDSTGLFASRLRLLFS+ED
Sbjct: 61  EDTTALKQEQETLMDRMKNIKRSLLHEASLDSTGLFASRLRLLFSQED 108

[Close]
BLAST of Cla97C05G096340 vs. NCBI nr
Match: XP_022975908.1 (uncharacterized protein LOC111476471 [Cucurbita maxima])

HSP 1 Score: 191.4 bits (485), Expect = 1.6e-45
Identity = 100/108 (92.59%), Postives = 105/108 (97.22%), Query Frame = 0 

Query: 1   MAPSAPSSSAPEFQMRKKPLNLFANALKRKDSFIQFFAMTGILLLSFRSLGQKYRIHDLQ 60
           MAPS+PSSSAPEFQM KKPL+LFANALKRKDSFIQFFAM+GILLLS RSLGQKYRIHDLQ
Sbjct: 1   MAPSSPSSSAPEFQMPKKPLSLFANALKRKDSFIQFFAMSGILLLSVRSLGQKYRIHDLQ 60

Query: 61  EDTTALKQEQETLIDRMNNIKRSLLHEASLDSTGLFASRLRLLFSEED 109
           EDTTALKQEQETLIDRM NIKRSLLHEASLDSTGLFASRLRLLFS++D
Sbjct: 61  EDTTALKQEQETLIDRMKNIKRSLLHEASLDSTGLFASRLRLLFSQDD 108

[Close]
BLAST of Cla97C05G096340 vs. NCBI nr
Match: XP_022142735.1 (uncharacterized protein LOC111012778 [Momordica charantia] >XP_022142744.1 uncharacterized protein LOC111012778 [Momordica charantia])

HSP 1 Score: 186.0 bits (471), Expect = 6.6e-44
Identity = 97/108 (89.81%), Postives = 101/108 (93.52%), Query Frame = 0 

Query: 1   MAPSAPSSSAPEFQMRKKPLNLFANALKRKDSFIQFFAMTGILLLSFRSLGQKYRIHDLQ 60
           MAPSAPSSSAPEFQ+ KKPL LFANALKRKDSFIQFFAMTGI+LLS RSLGQKYRIHDLQ
Sbjct: 1   MAPSAPSSSAPEFQLPKKPLGLFANALKRKDSFIQFFAMTGIMLLSVRSLGQKYRIHDLQ 60

Query: 61  EDTTALKQEQETLIDRMNNIKRSLLHEASLDSTGLFASRLRLLFSEED 109
           EDT+ALKQE ETLIDRM NIKRSLLHEASLD TG FASRLRLLFS+ED
Sbjct: 61  EDTSALKQEHETLIDRMKNIKRSLLHEASLDPTGFFASRLRLLFSDED 108

[Close]
BLAST of Cla97C05G096340 vs. NCBI nr
Match: XP_011654256.1 (PREDICTED: uncharacterized protein LOC105435327 [Cucumis sativus] >XP_011654257.1 PREDICTED: uncharacterized protein LOC105435327 [Cucumis sativus] >KGN55481.1 hypothetical protein Csa_4G653420 [Cucumis sativus])

HSP 1 Score: 181.4 bits (459), Expect = 1.6e-42
Identity = 95/108 (87.96%), Postives = 100/108 (92.59%), Query Frame = 0 

Query: 1   MAPSAPSSSAPEFQMRKKPLNLFANALKRKDSFIQFFAMTGILLLSFRSLGQKYRIHDLQ 60
           MAPSAPSSS PEFQM KKPL L+ANALKRKDSFIQ  AMTGILLLSFRSLGQKYRI+DLQ
Sbjct: 1   MAPSAPSSSTPEFQMSKKPLGLYANALKRKDSFIQLLAMTGILLLSFRSLGQKYRINDLQ 60

Query: 61  EDTTALKQEQETLIDRMNNIKRSLLHEASLDSTGLFASRLRLLFSEED 109
           EDTTALKQE ETL+DRM NIKRSLLHEASL+STG FASRLRLLFS+ED
Sbjct: 61  EDTTALKQEHETLVDRMKNIKRSLLHEASLESTGHFASRLRLLFSDED 108

[Close]
BLAST of Cla97C05G096340 vs. TrEMBL
Match: tr|A0A0A0L5S3|A0A0A0L5S3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G653420 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.1e-42
Identity = 95/108 (87.96%), Postives = 100/108 (92.59%), Query Frame = 0 

Query: 1   MAPSAPSSSAPEFQMRKKPLNLFANALKRKDSFIQFFAMTGILLLSFRSLGQKYRIHDLQ 60
           MAPSAPSSS PEFQM KKPL L+ANALKRKDSFIQ  AMTGILLLSFRSLGQKYRI+DLQ
Sbjct: 1   MAPSAPSSSTPEFQMSKKPLGLYANALKRKDSFIQLLAMTGILLLSFRSLGQKYRINDLQ 60

Query: 61  EDTTALKQEQETLIDRMNNIKRSLLHEASLDSTGLFASRLRLLFSEED 109
           EDTTALKQE ETL+DRM NIKRSLLHEASL+STG FASRLRLLFS+ED
Sbjct: 61  EDTTALKQEHETLVDRMKNIKRSLLHEASLESTGHFASRLRLLFSDED 108

[Close]
BLAST of Cla97C05G096340 vs. TrEMBL
Match: tr|A0A1S3BW63|A0A1S3BW63_CUCME (uncharacterized protein LOC103493794 OS=Cucumis melo OX=3656 GN=LOC103493794 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 2.5e-39
Identity = 89/108 (82.41%), Postives = 95/108 (87.96%), Query Frame = 0 

Query: 1   MAPSAPSSSAPEFQMRKKPLNLFANALKRKDSFIQFFAMTGILLLSFRSLGQKYRIHDLQ 60
           MAPSAPSSS PEFQM KKPL  +AN LK KD  IQ  AMTGILLLS RSLGQKYRI++LQ
Sbjct: 1   MAPSAPSSSTPEFQMSKKPLGFYANVLKHKDGLIQLLAMTGILLLSCRSLGQKYRINNLQ 60

Query: 61  EDTTALKQEQETLIDRMNNIKRSLLHEASLDSTGLFASRLRLLFSEED 109
           EDTTALKQE ETL+DRM NIKRSLLHEASL+STGLFASRLRLLFS+ED
Sbjct: 61  EDTTALKQEHETLVDRMKNIKRSLLHEASLESTGLFASRLRLLFSDED 108

[Close]
BLAST of Cla97C05G096340 vs. TrEMBL
Match: tr|A0A067KL49|A0A067KL49_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_08138 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 1.5e-33
Identity = 79/107 (73.83%), Postives = 90/107 (84.11%), Query Frame = 0 

Query: 1   MAPSAPSSSAPEFQMRKKPLNLFANALKRKDSFIQFFAMTGILLLSFRSLGQKYRIHDLQ 60
           MA SAP  SA   +  +KPL L ANA+KRKDSFIQ FAMTGILLLS RSLGQKYRIH L+
Sbjct: 1   MASSAPPGSATATRSSRKPLGLIANAMKRKDSFIQLFAMTGILLLSVRSLGQKYRIHGLE 60

Query: 61  EDTTALKQEQETLIDRMNNIKRSLLHEASLDSTGLFASRLRLLFSEE 108
           EDT+ALKQEQ+TL DR+NNIKR LLHEASL+ TGLFA+RLRLLF ++
Sbjct: 61  EDTSALKQEQQTLTDRLNNIKRGLLHEASLEPTGLFAARLRLLFGDD 107

[Close]
BLAST of Cla97C05G096340 vs. TrEMBL
Match: tr|A0A2I4G353|A0A2I4G353_9ROSI (uncharacterized protein LOC109004280 OS=Juglans regia OX=51240 GN=LOC109004280 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.7e-32
Identity = 77/108 (71.30%), Postives = 88/108 (81.48%), Query Frame = 0 

Query: 1   MAPSAPSSSAPEFQMRKKPLNLFANALKRKDSFIQFFAMTGILLLSFRSLGQKYRIHDLQ 60
           MA SAP  S P  Q  ++ + L ANA+KRKDSFIQFFAMTGILLLS RSLGQKYRIHDLQ
Sbjct: 1   MASSAPPRSGPGVQNPRRSMGLLANAMKRKDSFIQFFAMTGILLLSLRSLGQKYRIHDLQ 60

Query: 61  EDTTALKQEQETLIDRMNNIKRSLLHEASLDSTGLFASRLRLLFSEED 109
           EDT+AL +E++TL +RM NIKR LLHEASLD TG  +SRLRLL+ EED
Sbjct: 61  EDTSALIEERDTLTERMKNIKRDLLHEASLDPTGFLSSRLRLLYGEED 108

[Close]
BLAST of Cla97C05G096340 vs. TrEMBL
Match: tr|A0A2P2MYR9|A0A2P2MYR9_RHIMU (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 2.2e-32
Identity = 81/108 (75.00%), Postives = 89/108 (82.41%), Query Frame = 0 

Query: 1   MAPSAPSSSAPEFQMRKKPLNLFANALKRKDSFIQFFAMTGILLLSFRSLGQKYRIHDLQ 60
           M  SAPSSSA      KK L L ANA+K K SFIQFFAMTGILLLS RSLGQKYRI+DL+
Sbjct: 1   MGSSAPSSSAAA-PKPKKSLGLMANAMKNKHSFIQFFAMTGILLLSMRSLGQKYRIYDLE 60

Query: 61  EDTTALKQEQETLIDRMNNIKRSLLHEASLDSTGLFASRLRLLFSEED 109
           ED +ALKQEQE L+ RMNNIKR LLHEASLDSTGLFASRLRLLF +++
Sbjct: 61  EDNSALKQEQENLLQRMNNIKRGLLHEASLDSTGLFASRLRLLFGDQE 107

[Close]
BLAST of Cla97C05G096340 vs. TAIR10
Match: AT1G20430.1 (unknown protein)

HSP 1 Score: 118.6 bits (296), Expect = 2.3e-27
Identity = 66/114 (57.89%), Postives = 78/114 (68.42%), Query Frame = 0 

Query: 1   MAPSAPSSSA-------PEFQMRKKPLNLFANALKRKDSFIQFFAMTGILLLSFRSLGQK 60
           MA SAP  S        P   +       F N  K K SF QF AMTGILLLSFRS+ QK
Sbjct: 1   MASSAPQGSVDPLTGKDPAKALTAVASGFFENVKKNKQSFFQFAAMTGILLLSFRSVSQK 60

Query: 61  YRIHDLQEDTTALKQEQETLIDRMNNIKRSLLHEASLDSTGLFASRLRLLFSEE 108
           YRIHDL+EDT  LK+EQ++L DRM+ IK  LLH+AS+DS+G+FASRLRLLF E+
Sbjct: 61  YRIHDLEEDTAVLKKEQDSLTDRMSKIKSDLLHQASIDSSGVFASRLRLLFGED 114

The following BLAST results are available for this feature:
BLAST of Cla97C05G096340 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023535555.12.4e-4694.44uncharacterized protein LOC111796960 [Cucurbita pepo subsp. pepo][more]
XP_022936518.15.4e-4693.52uncharacterized protein LOC111443106 [Cucurbita moschata][more]
XP_022975908.11.6e-4592.59uncharacterized protein LOC111476471 [Cucurbita maxima][more]
XP_022142735.16.6e-4489.81uncharacterized protein LOC111012778 [Momordica charantia] >XP_022142744.1 uncha... [more]
XP_011654256.11.6e-4287.96PREDICTED: uncharacterized protein LOC105435327 [Cucumis sativus] >XP_011654257.... [more]
BLAST of Cla97C05G096340 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L5S3|A0A0A0L5S3_CUCSA1.1e-4287.96Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G653420 PE=4 SV=1[more]
tr|A0A1S3BW63|A0A1S3BW63_CUCME2.5e-3982.41uncharacterized protein LOC103493794 OS=Cucumis melo OX=3656 GN=LOC103493794 PE=... [more]
tr|A0A067KL49|A0A067KL49_JATCU1.5e-3373.83Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_08138 PE=4 SV=1[more]
tr|A0A2I4G353|A0A2I4G353_9ROSI1.7e-3271.30uncharacterized protein LOC109004280 OS=Juglans regia OX=51240 GN=LOC109004280 P... [more]
tr|A0A2P2MYR9|A0A2P2MYR9_RHIMU2.2e-3275.00Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1[more]
BLAST of Cla97C05G096340 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C05G096340 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G20430.12.3e-2757.89unknown protein[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032447 protein urmylation
biological_process GO:0008033 tRNA processing
biological_process GO:0034227 tRNA thio-modification
biological_process GO:0002098 tRNA wobble uridine modification
biological_process GO:0008150 biological_process
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0016779 nucleotidyltransferase activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0016740 transferase activity
molecular_function GO:0000049 tRNA binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C05G096340.1Cla97C05G096340.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36316FAMILY NOT NAMEDcoord: 1..107

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C05G096340Cla007403Watermelon (97103) v1wmwmbB207
Cla97C05G096340Csa4G653420Cucumber (Chinese Long) v2cuwmbB310
Cla97C05G096340MELO3C017006Melon (DHL92) v3.5.1mewmbB481
Cla97C05G096340ClCG05G015240Watermelon (Charleston Gray)wcgwmbB229
Cla97C05G096340CSPI04G26720Wild cucumber (PI 183967)cpiwmbB320
Cla97C05G096340Cucsa.271940Cucumber (Gy14) v1cgywmbB472
Cla97C05G096340CmaCh09G000710Cucurbita maxima (Rimu)cmawmbB029
Cla97C05G096340CmoCh09G000720Cucurbita moschata (Rifu)cmowmbB017
Cla97C05G096340MELO3C017006.2Melon (DHL92) v3.6.1medwmbB474
Cla97C05G096340Carg08644Silver-seed gourdcarwmbB0108
Cla97C05G096340CsaV3_4G037080Cucumber (Chinese Long) v3cucwmbB317
Cla97C05G096340Bhi09G002420Wax gourdwgowmbB576
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C05G096340Cucumber (Gy14) v2cgybwmbB293
Cla97C05G096340Cucurbita maxima (Rimu)cmawmbB483
Cla97C05G096340Cucurbita moschata (Rifu)cmowmbB464
Cla97C05G096340Wild cucumber (PI 183967)cpiwmbB217
Cla97C05G096340Bottle gourd (USVL1VR-Ls)lsiwmbB291
Cla97C05G096340Silver-seed gourdcarwmbB0374