CmaCh09G000710 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh09G000710
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Coffea canephora DH200=94 genomic scaffold, scaffold_26
Location	Cma_Chr09 : 314340 .. 314666 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCCTTCATCTCCGTCTAGCTCAGCCCCTGAATTTCAAATGCCCAAAAAGCCACTCAGTTTATTCGCCAATGCACTAAAACGCAAGGATAGCTTCATTCAGTTCTTCGCCATGTCTGGTATTTTGCTTCTAAGCGTCCGATCCTTGGGTCAGAAGTACCGTATCCACGACCTTCAAGAGGACACTACGGCTCTCAAACAAGAACAGGAAACCCTAATTGACCGTATGAAGAACATCAAGCGCAGCCTCCTTCACGAGGCATCCCTTGACTCCACTGGCCTCTTCGCATCCAGGCTTCGCCTTCTCTTCAGCCAAGACGACTGA

mRNA sequence

ATGGCGCCTTCATCTCCGTCTAGCTCAGCCCCTGAATTTCAAATGCCCAAAAAGCCACTCAGTTTATTCGCCAATGCACTAAAACGCAAGGATAGCTTCATTCAGTTCTTCGCCATGTCTGGTATTTTGCTTCTAAGCGTCCGATCCTTGGGTCAGAAGTACCGTATCCACGACCTTCAAGAGGACACTACGGCTCTCAAACAAGAACAGGAAACCCTAATTGACCGTATGAAGAACATCAAGCGCAGCCTCCTTCACGAGGCATCCCTTGACTCCACTGGCCTCTTCGCATCCAGGCTTCGCCTTCTCTTCAGCCAAGACGACTGA

Coding sequence (CDS)

ATGGCGCCTTCATCTCCGTCTAGCTCAGCCCCTGAATTTCAAATGCCCAAAAAGCCACTCAGTTTATTCGCCAATGCACTAAAACGCAAGGATAGCTTCATTCAGTTCTTCGCCATGTCTGGTATTTTGCTTCTAAGCGTCCGATCCTTGGGTCAGAAGTACCGTATCCACGACCTTCAAGAGGACACTACGGCTCTCAAACAAGAACAGGAAACCCTAATTGACCGTATGAAGAACATCAAGCGCAGCCTCCTTCACGAGGCATCCCTTGACTCCACTGGCCTCTTCGCATCCAGGCTTCGCCTTCTCTTCAGCCAAGACGACTGA

Protein sequence

MAPSSPSSSAPEFQMPKKPLSLFANALKRKDSFIQFFAMSGILLLSVRSLGQKYRIHDLQEDTTALKQEQETLIDRMKNIKRSLLHEASLDSTGLFASRLRLLFSQDD

Homology

[Close]

BLAST of CmaCh09G000710 vs. TrEMBL
Match: A0A0A0L5S3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G653420 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 7.1e-41
Identity = 92/108 (85.19%), Postives = 99/108 (91.67%), Query Frame = 1


Query: 1   MAPSSPSSSAPEFQMPKKPLSLFANALKRKDSFIQFFAMSGILLLSVRSLGQKYRIHDLQ 60
           MAPS+PSSS PEFQM KKPL L+ANALKRKDSFIQ  AM+GILLLS RSLGQKYRI+DLQ
Sbjct: 1   MAPSAPSSSTPEFQMSKKPLGLYANALKRKDSFIQLLAMTGILLLSFRSLGQKYRINDLQ 60

Query: 61  EDTTALKQEQETLIDRMKNIKRSLLHEASLDSTGLFASRLRLLFSQDD 109
           EDTTALKQE ETL+DRMKNIKRSLLHEASL+STG FASRLRLLFS +D
Sbjct: 61  EDTTALKQEHETLVDRMKNIKRSLLHEASLESTGHFASRLRLLFSDED 108

[Close]

BLAST of CmaCh09G000710 vs. TrEMBL
Match: F6H0C7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g00460 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.1e-33
Identity = 85/109 (77.98%), Postives = 92/109 (84.40%), Query Frame = 1


Query: 1   MAPSSPSSSAPEFQMP--KKPLSLFANALKRKDSFIQFFAMSGILLLSVRSLGQKYRIHD 60
           MA SS SSSA  FQ P  KK L L ANALKRKDSFIQFFAMSGI LLS+RSLGQKYR++D
Sbjct: 1   MASSSSSSSASNFQNPNKKKTLGLIANALKRKDSFIQFFAMSGIFLLSLRSLGQKYRLND 60

Query: 61  LQEDTTALKQEQETLIDRMKNIKRSLLHEASLDSTGLFASRLRLLFSQD 108
           LQEDT +LK+EQ+ L DRM +IKRSLLHEASLDSTGLFASRLRLLF  D
Sbjct: 61  LQEDTASLKEEQKGLHDRMNHIKRSLLHEASLDSTGLFASRLRLLFGDD 109

[Close]

BLAST of CmaCh09G000710 vs. TrEMBL
Match: A5C535_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_013558 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 7.1e-33
Identity = 83/106 (78.30%), Postives = 90/106 (84.91%), Query Frame = 1


Query: 4   SSPSSSAPEFQMP--KKPLSLFANALKRKDSFIQFFAMSGILLLSVRSLGQKYRIHDLQE 63
           SS SSSA  FQ P  KK L L ANALKRKDSFIQFFAMSGI LLS+RSLGQKYR++DLQE
Sbjct: 5   SSSSSSASNFQNPNKKKTLGLIANALKRKDSFIQFFAMSGIFLLSLRSLGQKYRLNDLQE 64

Query: 64  DTTALKQEQETLIDRMKNIKRSLLHEASLDSTGLFASRLRLLFSQD 108
           DT +LK+EQ+ L DRM +IKRSLLHEASLDSTGLFASRLRLLF  D
Sbjct: 65  DTASLKEEQKGLHDRMNHIKRSLLHEASLDSTGLFASRLRLLFGDD 110

[Close]

BLAST of CmaCh09G000710 vs. TrEMBL
Match: A0A067KL49_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08138 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 9.3e-33
Identity = 78/107 (72.90%), Postives = 89/107 (83.18%), Query Frame = 1


Query: 1   MAPSSPSSSAPEFQMPKKPLSLFANALKRKDSFIQFFAMSGILLLSVRSLGQKYRIHDLQ 60
           MA S+P  SA   +  +KPL L ANA+KRKDSFIQ FAM+GILLLSVRSLGQKYRIH L+
Sbjct: 1   MASSAPPGSATATRSSRKPLGLIANAMKRKDSFIQLFAMTGILLLSVRSLGQKYRIHGLE 60

Query: 61  EDTTALKQEQETLIDRMKNIKRSLLHEASLDSTGLFASRLRLLFSQD 108
           EDT+ALKQEQ+TL DR+ NIKR LLHEASL+ TGLFA+RLRLLF  D
Sbjct: 61  EDTSALKQEQQTLTDRLNNIKRGLLHEASLEPTGLFAARLRLLFGDD 107

[Close]

BLAST of CmaCh09G000710 vs. TrEMBL
Match: A9PEW8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s01500g PE=2 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 9.3e-33
Identity = 78/104 (75.00%), Postives = 89/104 (85.58%), Query Frame = 1


Query: 4   SSPSSSAPEFQMPKKPLSLFANALKRKDSFIQFFAMSGILLLSVRSLGQKYRIHDLQEDT 63
           +S SS+    Q P+K L L ANA+KRKDSFIQ FAM+GI LLS+RSLGQKY+IHDLQEDT
Sbjct: 2   ASSSSAGNAAQNPRKSLGLVANAMKRKDSFIQLFAMTGIFLLSIRSLGQKYQIHDLQEDT 61

Query: 64  TALKQEQETLIDRMKNIKRSLLHEASLDSTGLFASRLRLLFSQD 108
            ALK+EQ+ L DRMKNIKRSLLHEASLDS+GLFASRLRLLF +D
Sbjct: 62  IALKEEQKNLTDRMKNIKRSLLHEASLDSSGLFASRLRLLFGED 105

[Close]

BLAST of CmaCh09G000710 vs. TAIR10
Match: AT1G20430.1 (AT1G20430.1 unknown protein)

HSP 1 Score: 113.2 bits (282), Expect = 9.8e-26
Identity = 65/114 (57.02%), Postives = 79/114 (69.30%), Query Frame = 1


Query: 1   MAPSSPSSSAPEF--QMPKKPLS-----LFANALKRKDSFIQFFAMSGILLLSVRSLGQK 60
           MA S+P  S      + P K L+      F N  K K SF QF AM+GILLLS RS+ QK
Sbjct: 1   MASSAPQGSVDPLTGKDPAKALTAVASGFFENVKKNKQSFFQFAAMTGILLLSFRSVSQK 60

Query: 61  YRIHDLQEDTTALKQEQETLIDRMKNIKRSLLHEASLDSTGLFASRLRLLFSQD 108
           YRIHDL+EDT  LK+EQ++L DRM  IK  LLH+AS+DS+G+FASRLRLLF +D
Sbjct: 61  YRIHDLEEDTAVLKKEQDSLTDRMSKIKSDLLHQASIDSSGVFASRLRLLFGED 114

[Close]

BLAST of CmaCh09G000710 vs. NCBI nr
Match: gi|778697093|ref|XP_011654256.1| (PREDICTED: uncharacterized protein LOC105435327 [Cucumis sativus])

HSP 1 Score: 174.5 bits (441), Expect = 1.0e-40
Identity = 92/108 (85.19%), Postives = 99/108 (91.67%), Query Frame = 1


Query: 1   MAPSSPSSSAPEFQMPKKPLSLFANALKRKDSFIQFFAMSGILLLSVRSLGQKYRIHDLQ 60
           MAPS+PSSS PEFQM KKPL L+ANALKRKDSFIQ  AM+GILLLS RSLGQKYRI+DLQ
Sbjct: 1   MAPSAPSSSTPEFQMSKKPLGLYANALKRKDSFIQLLAMTGILLLSFRSLGQKYRINDLQ 60

Query: 61  EDTTALKQEQETLIDRMKNIKRSLLHEASLDSTGLFASRLRLLFSQDD 109
           EDTTALKQE ETL+DRMKNIKRSLLHEASL+STG FASRLRLLFS +D
Sbjct: 61  EDTTALKQEHETLVDRMKNIKRSLLHEASLESTGHFASRLRLLFSDED 108

[Close]

BLAST of CmaCh09G000710 vs. NCBI nr
Match: gi|659104383|ref|XP_008452927.1| (PREDICTED: uncharacterized protein LOC103493794 [Cucumis melo])

HSP 1 Score: 166.4 bits (420), Expect = 2.8e-38
Identity = 87/108 (80.56%), Postives = 95/108 (87.96%), Query Frame = 1


Query: 1   MAPSSPSSSAPEFQMPKKPLSLFANALKRKDSFIQFFAMSGILLLSVRSLGQKYRIHDLQ 60
           MAPS+PSSS PEFQM KKPL  +AN LK KD  IQ  AM+GILLLS RSLGQKYRI++LQ
Sbjct: 1   MAPSAPSSSTPEFQMSKKPLGFYANVLKHKDGLIQLLAMTGILLLSCRSLGQKYRINNLQ 60

Query: 61  EDTTALKQEQETLIDRMKNIKRSLLHEASLDSTGLFASRLRLLFSQDD 109
           EDTTALKQE ETL+DRMKNIKRSLLHEASL+STGLFASRLRLLFS +D
Sbjct: 61  EDTTALKQEHETLVDRMKNIKRSLLHEASLESTGLFASRLRLLFSDED 108

[Close]

BLAST of CmaCh09G000710 vs. NCBI nr
Match: gi|225459810|ref|XP_002285914.1| (PREDICTED: uncharacterized protein LOC100247271 [Vitis vinifera])

HSP 1 Score: 150.6 bits (379), Expect = 1.6e-33
Identity = 85/109 (77.98%), Postives = 92/109 (84.40%), Query Frame = 1


Query: 1   MAPSSPSSSAPEFQMP--KKPLSLFANALKRKDSFIQFFAMSGILLLSVRSLGQKYRIHD 60
           MA SS SSSA  FQ P  KK L L ANALKRKDSFIQFFAMSGI LLS+RSLGQKYR++D
Sbjct: 1   MASSSSSSSASNFQNPNKKKTLGLIANALKRKDSFIQFFAMSGIFLLSLRSLGQKYRLND 60

Query: 61  LQEDTTALKQEQETLIDRMKNIKRSLLHEASLDSTGLFASRLRLLFSQD 108
           LQEDT +LK+EQ+ L DRM +IKRSLLHEASLDSTGLFASRLRLLF  D
Sbjct: 61  LQEDTASLKEEQKGLHDRMNHIKRSLLHEASLDSTGLFASRLRLLFGDD 109

[Close]

BLAST of CmaCh09G000710 vs. NCBI nr
Match: gi|302141686|emb|CBI18889.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 150.6 bits (379), Expect = 1.6e-33
Identity = 85/109 (77.98%), Postives = 92/109 (84.40%), Query Frame = 1


Query: 1   MAPSSPSSSAPEFQMP--KKPLSLFANALKRKDSFIQFFAMSGILLLSVRSLGQKYRIHD 60
           MA SS SSSA  FQ P  KK L L ANALKRKDSFIQFFAMSGI LLS+RSLGQKYR++D
Sbjct: 416 MASSSSSSSASNFQNPNKKKTLGLIANALKRKDSFIQFFAMSGIFLLSLRSLGQKYRLND 475

Query: 61  LQEDTTALKQEQETLIDRMKNIKRSLLHEASLDSTGLFASRLRLLFSQD 108
           LQEDT +LK+EQ+ L DRM +IKRSLLHEASLDSTGLFASRLRLLF  D
Sbjct: 476 LQEDTASLKEEQKGLHDRMNHIKRSLLHEASLDSTGLFASRLRLLFGDD 524

[Close]

BLAST of CmaCh09G000710 vs. NCBI nr
Match: gi|147859188|emb|CAN83941.1| (hypothetical protein VITISV_013558 [Vitis vinifera])

HSP 1 Score: 147.9 bits (372), Expect = 1.0e-32
Identity = 83/106 (78.30%), Postives = 90/106 (84.91%), Query Frame = 1


Query: 4   SSPSSSAPEFQMP--KKPLSLFANALKRKDSFIQFFAMSGILLLSVRSLGQKYRIHDLQE 63
           SS SSSA  FQ P  KK L L ANALKRKDSFIQFFAMSGI LLS+RSLGQKYR++DLQE
Sbjct: 5   SSSSSSASNFQNPNKKKTLGLIANALKRKDSFIQFFAMSGIFLLSLRSLGQKYRLNDLQE 64

Query: 64  DTTALKQEQETLIDRMKNIKRSLLHEASLDSTGLFASRLRLLFSQD 108
           DT +LK+EQ+ L DRM +IKRSLLHEASLDSTGLFASRLRLLF  D
Sbjct: 65  DTASLKEEQKGLHDRMNHIKRSLLHEASLDSTGLFASRLRLLFGDD 110

The following BLAST results are available for this feature:

BLAST of CmaCh09G000710 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh09G000710 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5S3_CUCSA	7.1e-41	85.19	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G653420 PE=4 SV=1	[more]
F6H0C7_VITVI	1.1e-33	77.98	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g00460 PE=4 SV=...	[more]
A5C535_VITVI	7.1e-33	78.30	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_013558 PE=4 SV=1	[more]
A0A067KL49_JATCU	9.3e-33	72.90	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08138 PE=4 SV=1	[more]
A9PEW8_POPTR	9.3e-33	75.00	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s01500g PE=2 SV=1	[more]

BLAST of CmaCh09G000710 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G20430.1	9.8e-26	57.02	unknown protein	[more]

BLAST of CmaCh09G000710 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778697093\|ref\|XP_011654256.1\|	1.0e-40	85.19	PREDICTED: uncharacterized protein LOC105435327 [Cucumis sativus]	[more]
gi\|659104383\|ref\|XP_008452927.1\|	2.8e-38	80.56	PREDICTED: uncharacterized protein LOC103493794 [Cucumis melo]	[more]
gi\|225459810\|ref\|XP_002285914.1\|	1.6e-33	77.98	PREDICTED: uncharacterized protein LOC100247271 [Vitis vinifera]	[more]
gi\|302141686\|emb\|CBI18889.3\|	1.6e-33	77.98	unnamed protein product [Vitis vinifera]	[more]
gi\|147859188\|emb\|CAN83941.1\|	1.0e-32	78.30	hypothetical protein VITISV_013558 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh09G000710.1	CmaCh09G000710.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36316	FAMILY NOT NAMED	coord: 1..107 score: 3.6
None	No IPR available	PANTHER	PTHR36316:SF1	SUBFAMILY NOT NAMED	coord: 1..107 score: 3.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh09G000710	Cucsa.271940	Cucumber (Gy14) v1	cgycmaB0751
CmaCh09G000710	Cla007403	Watermelon (97103) v1	cmawmB029
CmaCh09G000710	Csa4G653420	Cucumber (Chinese Long) v2	cmacuB024
CmaCh09G000710	MELO3C017006	Melon (DHL92) v3.5.1	cmameB037
CmaCh09G000710	ClCG05G015240	Watermelon (Charleston Gray)	cmawcgB024
CmaCh09G000710	CSPI04G26720	Wild cucumber (PI 183967)	cmacpiB025
CmaCh09G000710	CmoCh09G000720	Cucurbita moschata (Rifu)	cmacmoB027
CmaCh09G000710	MELO3C017006.2	Melon (DHL92) v3.6.1	cmamedB036
CmaCh09G000710	CsaV3_4G037080	Cucumber (Chinese Long) v3	cmacucB0031
CmaCh09G000710	Cla97C05G096340	Watermelon (97103) v2	cmawmbB029
CmaCh09G000710	Bhi09G002420	Wax gourd	cmawgoB0029
CmaCh09G000710	Carg08644	Silver-seed gourd	carcmaB0134

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh09G000710	Cucumber (Gy14) v2	cgybcmaB469
CmaCh09G000710	Silver-seed gourd	carcmaB0501
CmaCh09G000710	Cucurbita maxima (Rimu)	cmacmaB051
CmaCh09G000710	Cucurbita moschata (Rifu)	cmacmoB047
CmaCh09G000710	Cucurbita pepo (Zucchini)	cmacpeB045
CmaCh09G000710	Cucurbita pepo (Zucchini)	cmacpeB060
CmaCh09G000710	Bottle gourd (USVL1VR-Ls)	cmalsiB024