ClCG05G015240 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG05G015240
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	F5M15.23
Location	CG_Chr05 : 26787793 .. 26788119 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCCTTCAGCTCCGTCAAGCTCAGCCCCTGAATTTCAAATGCCCAAAAAGCCACTTAATTTATTCGCTAACGCACTAAAACGCAAGGACAGCTTCATTCAGTTCTTCGCCATGACTGGTATTTTGCTTCTAAGCTTCCGATCTTTGGGTCAGAAGTACCGTATCCACGACCTTCAAGAGGACACTACGGCTCTCAAACAAGAACAGGAAACCCTAATTGACCGTATGAACAACATCAAGCGCAGCCTCCTTCATGAGGCATCGCTCGACTCCACTGGCCTCTTCGCATCCAGGCTTCGCCTTCTCTTCAGCGAAGAAGATTAA

mRNA sequence

ATGGCGCCTTCAGCTCCGTCAAGCTCAGCCCCTGAATTTCAAATGCCCAAAAAGCCACTTAATTTATTCGCTAACGCACTAAAACGCAAGGACAGCTTCATTCAGTTCTTCGCCATGACTGGTATTTTGCTTCTAAGCTTCCGATCTTTGGGTCAGAAGTACCGTATCCACGACCTTCAAGAGGACACTACGGCTCTCAAACAAGAACAGGAAACCCTAATTGACCGTATGAACAACATCAAGCGCAGCCTCCTTCATGAGGCATCGCTCGACTCCACTGGCCTCTTCGCATCCAGGCTTCGCCTTCTCTTCAGCGAAGAAGATTAA

Coding sequence (CDS)

ATGGCGCCTTCAGCTCCGTCAAGCTCAGCCCCTGAATTTCAAATGCCCAAAAAGCCACTTAATTTATTCGCTAACGCACTAAAACGCAAGGACAGCTTCATTCAGTTCTTCGCCATGACTGGTATTTTGCTTCTAAGCTTCCGATCTTTGGGTCAGAAGTACCGTATCCACGACCTTCAAGAGGACACTACGGCTCTCAAACAAGAACAGGAAACCCTAATTGACCGTATGAACAACATCAAGCGCAGCCTCCTTCATGAGGCATCGCTCGACTCCACTGGCCTCTTCGCATCCAGGCTTCGCCTTCTCTTCAGCGAAGAAGATTAA

Protein sequence

MAPSAPSSSAPEFQMPKKPLNLFANALKRKDSFIQFFAMTGILLLSFRSLGQKYRIHDLQEDTTALKQEQETLIDRMNNIKRSLLHEASLDSTGLFASRLRLLFSEED

Homology

[Close]

BLAST of ClCG05G015240 vs. TrEMBL
Match: A0A0A0L5S3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G653420 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 3.1e-44
Identity = 95/108 (87.96%), Postives = 100/108 (92.59%), Query Frame = 1


Query: 1   MAPSAPSSSAPEFQMPKKPLNLFANALKRKDSFIQFFAMTGILLLSFRSLGQKYRIHDLQ 60
           MAPSAPSSS PEFQM KKPL L+ANALKRKDSFIQ  AMTGILLLSFRSLGQKYRI+DLQ
Sbjct: 1   MAPSAPSSSTPEFQMSKKPLGLYANALKRKDSFIQLLAMTGILLLSFRSLGQKYRINDLQ 60

Query: 61  EDTTALKQEQETLIDRMNNIKRSLLHEASLDSTGLFASRLRLLFSEED 109
           EDTTALKQE ETL+DRM NIKRSLLHEASL+STG FASRLRLLFS+ED
Sbjct: 61  EDTTALKQEHETLVDRMKNIKRSLLHEASLESTGHFASRLRLLFSDED 108

[Close]

BLAST of ClCG05G015240 vs. TrEMBL
Match: A0A067KL49_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08138 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 3.4e-35
Identity = 79/107 (73.83%), Postives = 90/107 (84.11%), Query Frame = 1


Query: 1   MAPSAPSSSAPEFQMPKKPLNLFANALKRKDSFIQFFAMTGILLLSFRSLGQKYRIHDLQ 60
           MA SAP  SA   +  +KPL L ANA+KRKDSFIQ FAMTGILLLS RSLGQKYRIH L+
Sbjct: 1   MASSAPPGSATATRSSRKPLGLIANAMKRKDSFIQLFAMTGILLLSVRSLGQKYRIHGLE 60

Query: 61  EDTTALKQEQETLIDRMNNIKRSLLHEASLDSTGLFASRLRLLFSEE 108
           EDT+ALKQEQ+TL DR+NNIKR LLHEASL+ TGLFA+RLRLLF ++
Sbjct: 61  EDTSALKQEQQTLTDRLNNIKRGLLHEASLEPTGLFAARLRLLFGDD 107

[Close]

BLAST of ClCG05G015240 vs. TrEMBL
Match: F6H0C7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g00460 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 4.5e-35
Identity = 83/109 (76.15%), Postives = 93/109 (85.32%), Query Frame = 1


Query: 1   MAPSAPSSSAPEFQMP--KKPLNLFANALKRKDSFIQFFAMTGILLLSFRSLGQKYRIHD 60
           MA S+ SSSA  FQ P  KK L L ANALKRKDSFIQFFAM+GI LLS RSLGQKYR++D
Sbjct: 1   MASSSSSSSASNFQNPNKKKTLGLIANALKRKDSFIQFFAMSGIFLLSLRSLGQKYRLND 60

Query: 61  LQEDTTALKQEQETLIDRMNNIKRSLLHEASLDSTGLFASRLRLLFSEE 108
           LQEDT +LK+EQ+ L DRMN+IKRSLLHEASLDSTGLFASRLRLLF ++
Sbjct: 61  LQEDTASLKEEQKGLHDRMNHIKRSLLHEASLDSTGLFASRLRLLFGDD 109

[Close]

BLAST of ClCG05G015240 vs. TrEMBL
Match: B9R8I8_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1600160 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 2.9e-34
Identity = 78/108 (72.22%), Postives = 91/108 (84.26%), Query Frame = 1


Query: 1   MAPSAPSSSAPEFQMPKKPLNLFANALKRKDSFIQFFAMTGILLLSFRSLGQKYRIHDLQ 60
           MA SAP  SA   Q P+K + L ANA+KRKDSFIQFFAMTGILLLS RSLGQKYRIHDL+
Sbjct: 1   MASSAPPGSATAGQDPRKAVGLIANAMKRKDSFIQFFAMTGILLLSVRSLGQKYRIHDLE 60

Query: 61  EDTTALKQEQETLIDRMNNIKRSLLHEASLDSTGLFASRLRLLFSEED 109
           ED +ALK+EQ+TL  R++NIK+ LLHEASLD+TGLFASRLR LF +E+
Sbjct: 61  EDMSALKEEQQTLTTRLSNIKQGLLHEASLDTTGLFASRLRHLFGDEN 108

[Close]

BLAST of ClCG05G015240 vs. TrEMBL
Match: A5C535_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_013558 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 3.8e-34
Identity = 81/106 (76.42%), Postives = 91/106 (85.85%), Query Frame = 1


Query: 4   SAPSSSAPEFQMP--KKPLNLFANALKRKDSFIQFFAMTGILLLSFRSLGQKYRIHDLQE 63
           S+ SSSA  FQ P  KK L L ANALKRKDSFIQFFAM+GI LLS RSLGQKYR++DLQE
Sbjct: 5   SSSSSSASNFQNPNKKKTLGLIANALKRKDSFIQFFAMSGIFLLSLRSLGQKYRLNDLQE 64

Query: 64  DTTALKQEQETLIDRMNNIKRSLLHEASLDSTGLFASRLRLLFSEE 108
           DT +LK+EQ+ L DRMN+IKRSLLHEASLDSTGLFASRLRLLF ++
Sbjct: 65  DTASLKEEQKGLHDRMNHIKRSLLHEASLDSTGLFASRLRLLFGDD 110

[Close]

BLAST of ClCG05G015240 vs. TAIR10
Match: AT1G20430.1 (AT1G20430.1 unknown protein)

HSP 1 Score: 124.0 bits (310), Expect = 5.6e-29
Identity = 68/114 (59.65%), Postives = 78/114 (68.42%), Query Frame = 1


Query: 1   MAPSAPSSSAPEF--QMPKKPLN-----LFANALKRKDSFIQFFAMTGILLLSFRSLGQK 60
           MA SAP  S      + P K L       F N  K K SF QF AMTGILLLSFRS+ QK
Sbjct: 1   MASSAPQGSVDPLTGKDPAKALTAVASGFFENVKKNKQSFFQFAAMTGILLLSFRSVSQK 60

Query: 61  YRIHDLQEDTTALKQEQETLIDRMNNIKRSLLHEASLDSTGLFASRLRLLFSEE 108
           YRIHDL+EDT  LK+EQ++L DRM+ IK  LLH+AS+DS+G+FASRLRLLF E+
Sbjct: 61  YRIHDLEEDTAVLKKEQDSLTDRMSKIKSDLLHQASIDSSGVFASRLRLLFGED 114

[Close]

BLAST of ClCG05G015240 vs. NCBI nr
Match: gi|778697093|ref|XP_011654256.1| (PREDICTED: uncharacterized protein LOC105435327 [Cucumis sativus])

HSP 1 Score: 185.7 bits (470), Expect = 4.4e-44
Identity = 95/108 (87.96%), Postives = 100/108 (92.59%), Query Frame = 1


Query: 1   MAPSAPSSSAPEFQMPKKPLNLFANALKRKDSFIQFFAMTGILLLSFRSLGQKYRIHDLQ 60
           MAPSAPSSS PEFQM KKPL L+ANALKRKDSFIQ  AMTGILLLSFRSLGQKYRI+DLQ
Sbjct: 1   MAPSAPSSSTPEFQMSKKPLGLYANALKRKDSFIQLLAMTGILLLSFRSLGQKYRINDLQ 60

Query: 61  EDTTALKQEQETLIDRMNNIKRSLLHEASLDSTGLFASRLRLLFSEED 109
           EDTTALKQE ETL+DRM NIKRSLLHEASL+STG FASRLRLLFS+ED
Sbjct: 61  EDTTALKQEHETLVDRMKNIKRSLLHEASLESTGHFASRLRLLFSDED 108

[Close]

BLAST of ClCG05G015240 vs. NCBI nr
Match: gi|659104383|ref|XP_008452927.1| (PREDICTED: uncharacterized protein LOC103493794 [Cucumis melo])

HSP 1 Score: 174.5 bits (441), Expect = 1.0e-40
Identity = 89/108 (82.41%), Postives = 95/108 (87.96%), Query Frame = 1


Query: 1   MAPSAPSSSAPEFQMPKKPLNLFANALKRKDSFIQFFAMTGILLLSFRSLGQKYRIHDLQ 60
           MAPSAPSSS PEFQM KKPL  +AN LK KD  IQ  AMTGILLLS RSLGQKYRI++LQ
Sbjct: 1   MAPSAPSSSTPEFQMSKKPLGFYANVLKHKDGLIQLLAMTGILLLSCRSLGQKYRINNLQ 60

Query: 61  EDTTALKQEQETLIDRMNNIKRSLLHEASLDSTGLFASRLRLLFSEED 109
           EDTTALKQE ETL+DRM NIKRSLLHEASL+STGLFASRLRLLFS+ED
Sbjct: 61  EDTTALKQEHETLVDRMKNIKRSLLHEASLESTGLFASRLRLLFSDED 108

[Close]

BLAST of ClCG05G015240 vs. NCBI nr
Match: gi|802606418|ref|XP_012073693.1| (PREDICTED: uncharacterized protein LOC105635265 [Jatropha curcas])

HSP 1 Score: 155.6 bits (392), Expect = 4.9e-35
Identity = 79/107 (73.83%), Postives = 90/107 (84.11%), Query Frame = 1


Query: 1   MAPSAPSSSAPEFQMPKKPLNLFANALKRKDSFIQFFAMTGILLLSFRSLGQKYRIHDLQ 60
           MA SAP  SA   +  +KPL L ANA+KRKDSFIQ FAMTGILLLS RSLGQKYRIH L+
Sbjct: 1   MASSAPPGSATATRSSRKPLGLIANAMKRKDSFIQLFAMTGILLLSVRSLGQKYRIHGLE 60

Query: 61  EDTTALKQEQETLIDRMNNIKRSLLHEASLDSTGLFASRLRLLFSEE 108
           EDT+ALKQEQ+TL DR+NNIKR LLHEASL+ TGLFA+RLRLLF ++
Sbjct: 61  EDTSALKQEQQTLTDRLNNIKRGLLHEASLEPTGLFAARLRLLFGDD 107

[Close]

BLAST of ClCG05G015240 vs. NCBI nr
Match: gi|225459810|ref|XP_002285914.1| (PREDICTED: uncharacterized protein LOC100247271 [Vitis vinifera])

HSP 1 Score: 155.2 bits (391), Expect = 6.4e-35
Identity = 83/109 (76.15%), Postives = 93/109 (85.32%), Query Frame = 1


Query: 1   MAPSAPSSSAPEFQMP--KKPLNLFANALKRKDSFIQFFAMTGILLLSFRSLGQKYRIHD 60
           MA S+ SSSA  FQ P  KK L L ANALKRKDSFIQFFAM+GI LLS RSLGQKYR++D
Sbjct: 1   MASSSSSSSASNFQNPNKKKTLGLIANALKRKDSFIQFFAMSGIFLLSLRSLGQKYRLND 60

Query: 61  LQEDTTALKQEQETLIDRMNNIKRSLLHEASLDSTGLFASRLRLLFSEE 108
           LQEDT +LK+EQ+ L DRMN+IKRSLLHEASLDSTGLFASRLRLLF ++
Sbjct: 61  LQEDTASLKEEQKGLHDRMNHIKRSLLHEASLDSTGLFASRLRLLFGDD 109

[Close]

BLAST of ClCG05G015240 vs. NCBI nr
Match: gi|302141686|emb|CBI18889.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 155.2 bits (391), Expect = 6.4e-35
Identity = 83/109 (76.15%), Postives = 93/109 (85.32%), Query Frame = 1


Query: 1   MAPSAPSSSAPEFQMP--KKPLNLFANALKRKDSFIQFFAMTGILLLSFRSLGQKYRIHD 60
           MA S+ SSSA  FQ P  KK L L ANALKRKDSFIQFFAM+GI LLS RSLGQKYR++D
Sbjct: 416 MASSSSSSSASNFQNPNKKKTLGLIANALKRKDSFIQFFAMSGIFLLSLRSLGQKYRLND 475

Query: 61  LQEDTTALKQEQETLIDRMNNIKRSLLHEASLDSTGLFASRLRLLFSEE 108
           LQEDT +LK+EQ+ L DRMN+IKRSLLHEASLDSTGLFASRLRLLF ++
Sbjct: 476 LQEDTASLKEEQKGLHDRMNHIKRSLLHEASLDSTGLFASRLRLLFGDD 524

The following BLAST results are available for this feature:

BLAST of ClCG05G015240 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5S3_CUCSA	3.1e-44	87.96	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G653420 PE=4 SV=1	[more]
A0A067KL49_JATCU	3.4e-35	73.83	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08138 PE=4 SV=1	[more]
F6H0C7_VITVI	4.5e-35	76.15	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g00460 PE=4 SV=...	[more]
B9R8I8_RICCO	2.9e-34	72.22	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1600160 PE=4 SV=1	[more]
A5C535_VITVI	3.8e-34	76.42	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_013558 PE=4 SV=1	[more]

BLAST of ClCG05G015240 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G20430.1	5.6e-29	59.65	unknown protein	[more]

BLAST of ClCG05G015240 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778697093\|ref\|XP_011654256.1\|	4.4e-44	87.96	PREDICTED: uncharacterized protein LOC105435327 [Cucumis sativus]	[more]
gi\|659104383\|ref\|XP_008452927.1\|	1.0e-40	82.41	PREDICTED: uncharacterized protein LOC103493794 [Cucumis melo]	[more]
gi\|802606418\|ref\|XP_012073693.1\|	4.9e-35	73.83	PREDICTED: uncharacterized protein LOC105635265 [Jatropha curcas]	[more]
gi\|225459810\|ref\|XP_002285914.1\|	6.4e-35	76.15	PREDICTED: uncharacterized protein LOC100247271 [Vitis vinifera]	[more]
gi\|302141686\|emb\|CBI18889.3\|	6.4e-35	76.15	unnamed protein product [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0032447	protein urmylation
biological_process	GO:0034227	tRNA thio-modification
biological_process	GO:0002098	tRNA wobble uridine modification
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0016779	nucleotidyltransferase activity
molecular_function	GO:0000049	tRNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG05G015240.1	ClCG05G015240.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36316	FAMILY NOT NAMED	coord: 1..106 score: 4.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG05G015240	Csa4G653420	Cucumber (Chinese Long) v2	cuwcgB314
ClCG05G015240	MELO3C017006	Melon (DHL92) v3.5.1	mewcgB476
ClCG05G015240	Cla007403	Watermelon (97103) v1	wcgwmB285
ClCG05G015240	Cla97C05G096340	Watermelon (97103) v2	wcgwmbB229
ClCG05G015240	Bhi09G002420	Wax gourd	wcgwgoB476
ClCG05G015240	CSPI04G26720	Wild cucumber (PI 183967)	cpiwcgB330
ClCG05G015240	Cucsa.271940	Cucumber (Gy14) v1	cgywcgB471
ClCG05G015240	CmaCh09G000710	Cucurbita maxima (Rimu)	cmawcgB024
ClCG05G015240	CmoCh09G000720	Cucurbita moschata (Rifu)	cmowcgB018
ClCG05G015240	MELO3C017006.2	Melon (DHL92) v3.6.1	medwcgB470
ClCG05G015240	Carg08644	Silver-seed gourd	carwcgB0105
ClCG05G015240	CsaV3_4G037080	Cucumber (Chinese Long) v3	cucwcgB329

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG05G015240	Cucurbita pepo (Zucchini)	cpewcgB513
ClCG05G015240	Cucurbita pepo (Zucchini)	cpewcgB703
ClCG05G015240	Bottle gourd (USVL1VR-Ls)	lsiwcgB290
ClCG05G015240	Cucumber (Gy14) v2	cgybwcgB293
ClCG05G015240	Silver-seed gourd	carwcgB0351
ClCG05G015240	Cucurbita maxima (Rimu)	cmawcgB415
ClCG05G015240	Cucurbita moschata (Rifu)	cmowcgB415