CmoCh09G000720 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh09G000720
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	BnaA07g11460D protein
Location	Cmo_Chr09 : 323370 .. 323696 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCCTTCATCTCCGTCTAGCTCAGCCCCTGAATTTCAAATGCCCAAAAAGCCACTCAGTTTATTCGCCAATGCACTAAAACGCAAGGATAGCTTCATTCAGTTCTTCGCCATGACTGGTATTTTGCTTCTAAGCGTCCGATCCTTGGGTCAGAAGTACCGTATCCACGACCTTCAAGAGGACACTACGGCTCTCAAACAAGAACAGGAAACCCTAATGGACCGTATGAAGAACATCAAGCGCAGCCTCCTTCACGAGGCATCCCTTGACTCCACTGGCCTCTTCGCATCCAGGCTTCGCCTTCTCTTCAGCCAAGAAGACTGA

mRNA sequence

ATGGCGCCTTCATCTCCGTCTAGCTCAGCCCCTGAATTTCAAATGCCCAAAAAGCCACTCAGTTTATTCGCCAATGCACTAAAACGCAAGGATAGCTTCATTCAGTTCTTCGCCATGACTGGTATTTTGCTTCTAAGCGTCCGATCCTTGGGTCAGAAGTACCGTATCCACGACCTTCAAGAGGACACTACGGCTCTCAAACAAGAACAGGAAACCCTAATGGACCGTATGAAGAACATCAAGCGCAGCCTCCTTCACGAGGCATCCCTTGACTCCACTGGCCTCTTCGCATCCAGGCTTCGCCTTCTCTTCAGCCAAGAAGACTGA

Coding sequence (CDS)

ATGGCGCCTTCATCTCCGTCTAGCTCAGCCCCTGAATTTCAAATGCCCAAAAAGCCACTCAGTTTATTCGCCAATGCACTAAAACGCAAGGATAGCTTCATTCAGTTCTTCGCCATGACTGGTATTTTGCTTCTAAGCGTCCGATCCTTGGGTCAGAAGTACCGTATCCACGACCTTCAAGAGGACACTACGGCTCTCAAACAAGAACAGGAAACCCTAATGGACCGTATGAAGAACATCAAGCGCAGCCTCCTTCACGAGGCATCCCTTGACTCCACTGGCCTCTTCGCATCCAGGCTTCGCCTTCTCTTCAGCCAAGAAGACTGA

Homology

[Close]

BLAST of CmoCh09G000720 vs. TrEMBL
Match: A0A0A0L5S3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G653420 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 2.4e-41
Identity = 94/108 (87.04%), Postives = 99/108 (91.67%), Query Frame = 1


Query: 1   MAPSSPSSSAPEFQMPKKPLSLFANALKRKDSFIQFFAMTGILLLSVRSLGQKYRIHDLQ 60
           MAPS+PSSS PEFQM KKPL L+ANALKRKDSFIQ  AMTGILLLS RSLGQKYRI+DLQ
Sbjct: 1   MAPSAPSSSTPEFQMSKKPLGLYANALKRKDSFIQLLAMTGILLLSFRSLGQKYRINDLQ 60

Query: 61  EDTTALKQEQETLMDRMKNIKRSLLHEASLDSTGLFASRLRLLFSQED 109
           EDTTALKQE ETL+DRMKNIKRSLLHEASL+STG FASRLRLLFS ED
Sbjct: 61  EDTTALKQEHETLVDRMKNIKRSLLHEASLESTGHFASRLRLLFSDED 108

[Close]

BLAST of CmoCh09G000720 vs. TrEMBL
Match: W9RF20_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_011665 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 1.9e-33
Identity = 79/102 (77.45%), Postives = 89/102 (87.25%), Query Frame = 1


Query: 7   SSSAPEFQMPKKPLSLFANALKRKDSFIQFFAMTGILLLSVRSLGQKYRIHDLQEDTTAL 66
           SSSAP  + PKKPL+  ANA+KRKDSFIQFFAMTGILL+SVRSLGQKYRIHDL EDT+ L
Sbjct: 5   SSSAPPGRNPKKPLAFSANAMKRKDSFIQFFAMTGILLMSVRSLGQKYRIHDLLEDTSDL 64

Query: 67  KQEQETLMDRMKNIKRSLLHEASLDSTGLFASRLRLLFSQED 109
           K+EQE L +RMKNIKR+LLHEASL+ TG FASRLRLLF  E+
Sbjct: 65  KEEQEKLTERMKNIKRALLHEASLEPTGAFASRLRLLFGDEN 106

[Close]

BLAST of CmoCh09G000720 vs. TrEMBL
Match: F6H0C7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g00460 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 7.1e-33
Identity = 83/109 (76.15%), Postives = 92/109 (84.40%), Query Frame = 1


Query: 1   MAPSSPSSSAPEFQMP--KKPLSLFANALKRKDSFIQFFAMTGILLLSVRSLGQKYRIHD 60
           MA SS SSSA  FQ P  KK L L ANALKRKDSFIQFFAM+GI LLS+RSLGQKYR++D
Sbjct: 1   MASSSSSSSASNFQNPNKKKTLGLIANALKRKDSFIQFFAMSGIFLLSLRSLGQKYRLND 60

Query: 61  LQEDTTALKQEQETLMDRMKNIKRSLLHEASLDSTGLFASRLRLLFSQE 108
           LQEDT +LK+EQ+ L DRM +IKRSLLHEASLDSTGLFASRLRLLF  +
Sbjct: 61  LQEDTASLKEEQKGLHDRMNHIKRSLLHEASLDSTGLFASRLRLLFGDD 109

[Close]

BLAST of CmoCh09G000720 vs. TrEMBL
Match: A9PEW8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s01500g PE=2 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 9.3e-33
Identity = 78/104 (75.00%), Postives = 89/104 (85.58%), Query Frame = 1


Query: 4   SSPSSSAPEFQMPKKPLSLFANALKRKDSFIQFFAMTGILLLSVRSLGQKYRIHDLQEDT 63
           +S SS+    Q P+K L L ANA+KRKDSFIQ FAMTGI LLS+RSLGQKY+IHDLQEDT
Sbjct: 2   ASSSSAGNAAQNPRKSLGLVANAMKRKDSFIQLFAMTGIFLLSIRSLGQKYQIHDLQEDT 61

Query: 64  TALKQEQETLMDRMKNIKRSLLHEASLDSTGLFASRLRLLFSQE 108
            ALK+EQ+ L DRMKNIKRSLLHEASLDS+GLFASRLRLLF ++
Sbjct: 62  IALKEEQKNLTDRMKNIKRSLLHEASLDSSGLFASRLRLLFGED 105

[Close]

BLAST of CmoCh09G000720 vs. TrEMBL
Match: A0A067KL49_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08138 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.2e-32
Identity = 78/107 (72.90%), Postives = 89/107 (83.18%), Query Frame = 1


Query: 1   MAPSSPSSSAPEFQMPKKPLSLFANALKRKDSFIQFFAMTGILLLSVRSLGQKYRIHDLQ 60
           MA S+P  SA   +  +KPL L ANA+KRKDSFIQ FAMTGILLLSVRSLGQKYRIH L+
Sbjct: 1   MASSAPPGSATATRSSRKPLGLIANAMKRKDSFIQLFAMTGILLLSVRSLGQKYRIHGLE 60

Query: 61  EDTTALKQEQETLMDRMKNIKRSLLHEASLDSTGLFASRLRLLFSQE 108
           EDT+ALKQEQ+TL DR+ NIKR LLHEASL+ TGLFA+RLRLLF  +
Sbjct: 61  EDTSALKQEQQTLTDRLNNIKRGLLHEASLEPTGLFAARLRLLFGDD 107

[Close]

BLAST of CmoCh09G000720 vs. TAIR10
Match: AT1G20430.1 (AT1G20430.1 unknown protein)

HSP 1 Score: 112.8 bits (281), Expect = 1.3e-25
Identity = 65/114 (57.02%), Postives = 79/114 (69.30%), Query Frame = 1


Query: 1   MAPSSPSSSAPEF--QMPKKPLS-----LFANALKRKDSFIQFFAMTGILLLSVRSLGQK 60
           MA S+P  S      + P K L+      F N  K K SF QF AMTGILLLS RS+ QK
Sbjct: 1   MASSAPQGSVDPLTGKDPAKALTAVASGFFENVKKNKQSFFQFAAMTGILLLSFRSVSQK 60

Query: 61  YRIHDLQEDTTALKQEQETLMDRMKNIKRSLLHEASLDSTGLFASRLRLLFSQE 108
           YRIHDL+EDT  LK+EQ++L DRM  IK  LLH+AS+DS+G+FASRLRLLF ++
Sbjct: 61  YRIHDLEEDTAVLKKEQDSLTDRMSKIKSDLLHQASIDSSGVFASRLRLLFGED 114

[Close]

BLAST of CmoCh09G000720 vs. NCBI nr
Match: gi|778697093|ref|XP_011654256.1| (PREDICTED: uncharacterized protein LOC105435327 [Cucumis sativus])

HSP 1 Score: 176.0 bits (445), Expect = 3.5e-41
Identity = 94/108 (87.04%), Postives = 99/108 (91.67%), Query Frame = 1


Query: 1   MAPSSPSSSAPEFQMPKKPLSLFANALKRKDSFIQFFAMTGILLLSVRSLGQKYRIHDLQ 60
           MAPS+PSSS PEFQM KKPL L+ANALKRKDSFIQ  AMTGILLLS RSLGQKYRI+DLQ
Sbjct: 1   MAPSAPSSSTPEFQMSKKPLGLYANALKRKDSFIQLLAMTGILLLSFRSLGQKYRINDLQ 60

Query: 61  EDTTALKQEQETLMDRMKNIKRSLLHEASLDSTGLFASRLRLLFSQED 109
           EDTTALKQE ETL+DRMKNIKRSLLHEASL+STG FASRLRLLFS ED
Sbjct: 61  EDTTALKQEHETLVDRMKNIKRSLLHEASLESTGHFASRLRLLFSDED 108

[Close]

BLAST of CmoCh09G000720 vs. NCBI nr
Match: gi|659104383|ref|XP_008452927.1| (PREDICTED: uncharacterized protein LOC103493794 [Cucumis melo])

HSP 1 Score: 167.9 bits (424), Expect = 9.5e-39
Identity = 89/108 (82.41%), Postives = 95/108 (87.96%), Query Frame = 1


Query: 1   MAPSSPSSSAPEFQMPKKPLSLFANALKRKDSFIQFFAMTGILLLSVRSLGQKYRIHDLQ 60
           MAPS+PSSS PEFQM KKPL  +AN LK KD  IQ  AMTGILLLS RSLGQKYRI++LQ
Sbjct: 1   MAPSAPSSSTPEFQMSKKPLGFYANVLKHKDGLIQLLAMTGILLLSCRSLGQKYRINNLQ 60

Query: 61  EDTTALKQEQETLMDRMKNIKRSLLHEASLDSTGLFASRLRLLFSQED 109
           EDTTALKQE ETL+DRMKNIKRSLLHEASL+STGLFASRLRLLFS ED
Sbjct: 61  EDTTALKQEHETLVDRMKNIKRSLLHEASLESTGLFASRLRLLFSDED 108

[Close]

BLAST of CmoCh09G000720 vs. NCBI nr
Match: gi|703117085|ref|XP_010101300.1| (hypothetical protein L484_011665 [Morus notabilis])

HSP 1 Score: 149.8 bits (377), Expect = 2.7e-33
Identity = 79/102 (77.45%), Postives = 89/102 (87.25%), Query Frame = 1


Query: 7   SSSAPEFQMPKKPLSLFANALKRKDSFIQFFAMTGILLLSVRSLGQKYRIHDLQEDTTAL 66
           SSSAP  + PKKPL+  ANA+KRKDSFIQFFAMTGILL+SVRSLGQKYRIHDL EDT+ L
Sbjct: 5   SSSAPPGRNPKKPLAFSANAMKRKDSFIQFFAMTGILLMSVRSLGQKYRIHDLLEDTSDL 64

Query: 67  KQEQETLMDRMKNIKRSLLHEASLDSTGLFASRLRLLFSQED 109
           K+EQE L +RMKNIKR+LLHEASL+ TG FASRLRLLF  E+
Sbjct: 65  KEEQEKLTERMKNIKRALLHEASLEPTGAFASRLRLLFGDEN 106

[Close]

BLAST of CmoCh09G000720 vs. NCBI nr
Match: gi|302141686|emb|CBI18889.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 147.9 bits (372), Expect = 1.0e-32
Identity = 83/109 (76.15%), Postives = 92/109 (84.40%), Query Frame = 1


Query: 1   MAPSSPSSSAPEFQMP--KKPLSLFANALKRKDSFIQFFAMTGILLLSVRSLGQKYRIHD 60
           MA SS SSSA  FQ P  KK L L ANALKRKDSFIQFFAM+GI LLS+RSLGQKYR++D
Sbjct: 416 MASSSSSSSASNFQNPNKKKTLGLIANALKRKDSFIQFFAMSGIFLLSLRSLGQKYRLND 475

Query: 61  LQEDTTALKQEQETLMDRMKNIKRSLLHEASLDSTGLFASRLRLLFSQE 108
           LQEDT +LK+EQ+ L DRM +IKRSLLHEASLDSTGLFASRLRLLF  +
Sbjct: 476 LQEDTASLKEEQKGLHDRMNHIKRSLLHEASLDSTGLFASRLRLLFGDD 524

[Close]

BLAST of CmoCh09G000720 vs. NCBI nr
Match: gi|743875406|ref|XP_011034918.1| (PREDICTED: uncharacterized protein LOC105132886 [Populus euphratica])

HSP 1 Score: 147.9 bits (372), Expect = 1.0e-32
Identity = 78/104 (75.00%), Postives = 89/104 (85.58%), Query Frame = 1


Query: 4   SSPSSSAPEFQMPKKPLSLFANALKRKDSFIQFFAMTGILLLSVRSLGQKYRIHDLQEDT 63
           +S SS+    Q P+K L L ANA+KRKDSFIQ FAMTGI LLS+RSLGQKY+IHDLQEDT
Sbjct: 2   ASSSSAGNAAQTPRKSLGLVANAMKRKDSFIQLFAMTGIFLLSIRSLGQKYQIHDLQEDT 61

Query: 64  TALKQEQETLMDRMKNIKRSLLHEASLDSTGLFASRLRLLFSQE 108
            ALK+EQ+ L DRMKNIKRSLLHEASLDS+GLFASRLRLLF ++
Sbjct: 62  IALKEEQKNLTDRMKNIKRSLLHEASLDSSGLFASRLRLLFGED 105

The following BLAST results are available for this feature:

BLAST of CmoCh09G000720 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh09G000720 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5S3_CUCSA	2.4e-41	87.04	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G653420 PE=4 SV=1	[more]
W9RF20_9ROSA	1.9e-33	77.45	Uncharacterized protein OS=Morus notabilis GN=L484_011665 PE=4 SV=1	[more]
F6H0C7_VITVI	7.1e-33	76.15	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g00460 PE=4 SV=...	[more]
A9PEW8_POPTR	9.3e-33	75.00	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s01500g PE=2 SV=1	[more]
A0A067KL49_JATCU	1.2e-32	72.90	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08138 PE=4 SV=1	[more]

BLAST of CmoCh09G000720 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G20430.1	1.3e-25	57.02	unknown protein	[more]

BLAST of CmoCh09G000720 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778697093\|ref\|XP_011654256.1\|	3.5e-41	87.04	PREDICTED: uncharacterized protein LOC105435327 [Cucumis sativus]	[more]
gi\|659104383\|ref\|XP_008452927.1\|	9.5e-39	82.41	PREDICTED: uncharacterized protein LOC103493794 [Cucumis melo]	[more]
gi\|703117085\|ref\|XP_010101300.1\|	2.7e-33	77.45	hypothetical protein L484_011665 [Morus notabilis]	[more]
gi\|302141686\|emb\|CBI18889.3\|	1.0e-32	76.15	unnamed protein product [Vitis vinifera]	[more]
gi\|743875406\|ref\|XP_011034918.1\|	1.0e-32	75.00	PREDICTED: uncharacterized protein LOC105132886 [Populus euphratica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh09G000720.1	CmoCh09G000720.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 56..76 scor
None	No IPR available	PANTHER	PTHR36316	FAMILY NOT NAMED	coord: 1..104 score: 2.9
None	No IPR available	PANTHER	PTHR36316:SF1	SUBFAMILY NOT NAMED	coord: 1..104 score: 2.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh09G000720	Cucsa.271940	Cucumber (Gy14) v1	cgycmoB0742
CmoCh09G000720	CmaCh09G000710	Cucurbita maxima (Rimu)	cmacmoB027
CmoCh09G000720	Cla007403	Watermelon (97103) v1	cmowmB021
CmoCh09G000720	Csa4G653420	Cucumber (Chinese Long) v2	cmocuB015
CmoCh09G000720	MELO3C017006	Melon (DHL92) v3.5.1	cmomeB026
CmoCh09G000720	ClCG05G015240	Watermelon (Charleston Gray)	cmowcgB018
CmoCh09G000720	CSPI04G26720	Wild cucumber (PI 183967)	cmocpiB016
CmoCh09G000720	MELO3C017006.2	Melon (DHL92) v3.6.1	cmomedB026
CmoCh09G000720	CsaV3_4G037080	Cucumber (Chinese Long) v3	cmocucB0020
CmoCh09G000720	Cla97C05G096340	Watermelon (97103) v2	cmowmbB017
CmoCh09G000720	Bhi09G002420	Wax gourd	cmowgoB0023
CmoCh09G000720	Carg08644	Silver-seed gourd	carcmoB0144

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh09G000720	Cucurbita pepo (Zucchini)	cmocpeB020
CmoCh09G000720	Cucurbita pepo (Zucchini)	cmocpeB034
CmoCh09G000720	Bottle gourd (USVL1VR-Ls)	cmolsiB012
CmoCh09G000720	Cucumber (Gy14) v2	cgybcmoB438
CmoCh09G000720	Silver-seed gourd	carcmoB0484
CmoCh09G000720	Cucurbita maxima (Rimu)	cmacmoB435
CmoCh09G000720	Cucurbita moschata (Rifu)	cmocmoB017