Carg08644 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg08644
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Serine/arginine repetitive matrix protein
Location	Cucurbita_argyrosperma_scaffold_057 : 308306 .. 308632 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCCTTCATCTCCGTCTAGCTCAGCCCCTGAATTTCAAATGCCCAAAAAGCCACTCAGTTTATTCGCGAATGCACTAAAACGCAAGGATAGCTTCATTCAGTTCTTCGCCATGACTGGTATTTTGCTTCTAAGCGTCCGATCCTTGGGTCAGAAGTACCGTATCCACGACCTTCAAGAGGACACTACGGCTCTCAAACAAGAACAGGAAACCCTAATTGACCGTATGAAGAACATCAAGCGCAGCCTCCTTCACGAGGCATCCCTTGACTCCACTGGCCTCTTCGCATCCAGGCTTCGCCTTCTCTTCACCCAAGAAGACTGA

mRNA sequence

ATGGCGCCTTCATCTCCGTCTAGCTCAGCCCCTGAATTTCAAATGCCCAAAAAGCCACTCAGTTTATTCGCGAATGCACTAAAACGCAAGGATAGCTTCATTCAGTTCTTCGCCATGACTGGTATTTTGCTTCTAAGCGTCCGATCCTTGGGTCAGAAGTACCGTATCCACGACCTTCAAGAGGACACTACGGCTCTCAAACAAGAACAGGAAACCCTAATTGACCGTATGAAGAACATCAAGCGCAGCCTCCTTCACGAGGCATCCCTTGACTCCACTGGCCTCTTCGCATCCAGGCTTCGCCTTCTCTTCACCCAAGAAGACTGA

Coding sequence (CDS)

ATGGCGCCTTCATCTCCGTCTAGCTCAGCCCCTGAATTTCAAATGCCCAAAAAGCCACTCAGTTTATTCGCGAATGCACTAAAACGCAAGGATAGCTTCATTCAGTTCTTCGCCATGACTGGTATTTTGCTTCTAAGCGTCCGATCCTTGGGTCAGAAGTACCGTATCCACGACCTTCAAGAGGACACTACGGCTCTCAAACAAGAACAGGAAACCCTAATTGACCGTATGAAGAACATCAAGCGCAGCCTCCTTCACGAGGCATCCCTTGACTCCACTGGCCTCTTCGCATCCAGGCTTCGCCTTCTCTTCACCCAAGAAGACTGA

Protein sequence

MAPSSPSSSAPEFQMPKKPLSLFANALKRKDSFIQFFAMTGILLLSVRSLGQKYRIHDLQEDTTALKQEQETLIDRMKNIKRSLLHEASLDSTGLFASRLRLLFTQED

Homology

[Close]

BLAST of Carg08644 vs. NCBI nr
Match: XP_023535555.1 (uncharacterized protein LOC111796960 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 202.6 bits (514), Expect = 6.8e-49
Identity = 107/108 (99.07%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MAPSSPSSSAPEFQMPKKPLSLFANALKRKDSFIQFFAMTGILLLSVRSLGQKYRIHDLQ 60
           MAPSSPSSSAPEFQMPKKPLSLFANALKRKDSFIQFFAMTGILLLSVRSLGQKYRIHDLQ
Sbjct: 1   MAPSSPSSSAPEFQMPKKPLSLFANALKRKDSFIQFFAMTGILLLSVRSLGQKYRIHDLQ 60

Query: 61  EDTTALKQEQETLIDRMKNIKRSLLHEASLDSTGLFASRLRLLFTQED 109
           EDTTALKQEQETLIDRMKNIKRSLLHEASLDSTGLFASRLRLLF+QED
Sbjct: 61  EDTTALKQEQETLIDRMKNIKRSLLHEASLDSTGLFASRLRLLFSQED 108

[Close]

BLAST of Carg08644 vs. NCBI nr
Match: XP_022936518.1 (uncharacterized protein LOC111443106 [Cucurbita moschata])

HSP 1 Score: 201.4 bits (511), Expect = 1.5e-48
Identity = 106/108 (98.15%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MAPSSPSSSAPEFQMPKKPLSLFANALKRKDSFIQFFAMTGILLLSVRSLGQKYRIHDLQ 60
           MAPSSPSSSAPEFQMPKKPLSLFANALKRKDSFIQFFAMTGILLLSVRSLGQKYRIHDLQ
Sbjct: 1   MAPSSPSSSAPEFQMPKKPLSLFANALKRKDSFIQFFAMTGILLLSVRSLGQKYRIHDLQ 60

Query: 61  EDTTALKQEQETLIDRMKNIKRSLLHEASLDSTGLFASRLRLLFTQED 109
           EDTTALKQEQETL+DRMKNIKRSLLHEASLDSTGLFASRLRLLF+QED
Sbjct: 61  EDTTALKQEQETLMDRMKNIKRSLLHEASLDSTGLFASRLRLLFSQED 108

[Close]

BLAST of Carg08644 vs. NCBI nr
Match: XP_022975908.1 (uncharacterized protein LOC111476471 [Cucurbita maxima])

HSP 1 Score: 199.9 bits (507), Expect = 4.4e-48
Identity = 105/108 (97.22%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MAPSSPSSSAPEFQMPKKPLSLFANALKRKDSFIQFFAMTGILLLSVRSLGQKYRIHDLQ 60
           MAPSSPSSSAPEFQMPKKPLSLFANALKRKDSFIQFFAM+GILLLSVRSLGQKYRIHDLQ
Sbjct: 1   MAPSSPSSSAPEFQMPKKPLSLFANALKRKDSFIQFFAMSGILLLSVRSLGQKYRIHDLQ 60

Query: 61  EDTTALKQEQETLIDRMKNIKRSLLHEASLDSTGLFASRLRLLFTQED 109
           EDTTALKQEQETLIDRMKNIKRSLLHEASLDSTGLFASRLRLLF+Q+D
Sbjct: 61  EDTTALKQEQETLIDRMKNIKRSLLHEASLDSTGLFASRLRLLFSQDD 108

[Close]

BLAST of Carg08644 vs. NCBI nr
Match: XP_022142735.1 (uncharacterized protein LOC111012778 [Momordica charantia] >XP_022142744.1 uncharacterized protein LOC111012778 [Momordica charantia])

HSP 1 Score: 189.1 bits (479), Expect = 7.8e-45
Identity = 98/108 (90.74%), Postives = 103/108 (95.37%), Query Frame = 0


Query: 1   MAPSSPSSSAPEFQMPKKPLSLFANALKRKDSFIQFFAMTGILLLSVRSLGQKYRIHDLQ 60
           MAPS+PSSSAPEFQ+PKKPL LFANALKRKDSFIQFFAMTGI+LLSVRSLGQKYRIHDLQ
Sbjct: 1   MAPSAPSSSAPEFQLPKKPLGLFANALKRKDSFIQFFAMTGIMLLSVRSLGQKYRIHDLQ 60

Query: 61  EDTTALKQEQETLIDRMKNIKRSLLHEASLDSTGLFASRLRLLFTQED 109
           EDT+ALKQE ETLIDRMKNIKRSLLHEASLD TG FASRLRLLF+ ED
Sbjct: 61  EDTSALKQEHETLIDRMKNIKRSLLHEASLDPTGFFASRLRLLFSDED 108

[Close]

BLAST of Carg08644 vs. NCBI nr
Match: XP_011654256.1 (PREDICTED: uncharacterized protein LOC105435327 [Cucumis sativus] >XP_011654257.1 PREDICTED: uncharacterized protein LOC105435327 [Cucumis sativus] >KGN55481.1 hypothetical protein Csa_4G653420 [Cucumis sativus])

HSP 1 Score: 176.4 bits (446), Expect = 5.2e-41
Identity = 93/108 (86.11%), Postives = 99/108 (91.67%), Query Frame = 0


Query: 1   MAPSSPSSSAPEFQMPKKPLSLFANALKRKDSFIQFFAMTGILLLSVRSLGQKYRIHDLQ 60
           MAPS+PSSS PEFQM KKPL L+ANALKRKDSFIQ  AMTGILLLS RSLGQKYRI+DLQ
Sbjct: 1   MAPSAPSSSTPEFQMSKKPLGLYANALKRKDSFIQLLAMTGILLLSFRSLGQKYRINDLQ 60

Query: 61  EDTTALKQEQETLIDRMKNIKRSLLHEASLDSTGLFASRLRLLFTQED 109
           EDTTALKQE ETL+DRMKNIKRSLLHEASL+STG FASRLRLLF+ ED
Sbjct: 61  EDTTALKQEHETLVDRMKNIKRSLLHEASLESTGHFASRLRLLFSDED 108

[Close]

BLAST of Carg08644 vs. TAIR10
Match: AT1G20430.1 (unknown protein)

HSP 1 Score: 112.8 bits (281), Expect = 1.3e-25
Identity = 65/114 (57.02%), Postives = 79/114 (69.30%), Query Frame = 0


Query: 1   MAPSSPSSSAPEF--QMPKKPLS-----LFANALKRKDSFIQFFAMTGILLLSVRSLGQK 60
           MA S+P  S      + P K L+      F N  K K SF QF AMTGILLLS RS+ QK
Sbjct: 1   MASSAPQGSVDPLTGKDPAKALTAVASGFFENVKKNKQSFFQFAAMTGILLLSFRSVSQK 60

Query: 61  YRIHDLQEDTTALKQEQETLIDRMKNIKRSLLHEASLDSTGLFASRLRLLFTQE 108
           YRIHDL+EDT  LK+EQ++L DRM  IK  LLH+AS+DS+G+FASRLRLLF ++
Sbjct: 61  YRIHDLEEDTAVLKKEQDSLTDRMSKIKSDLLHQASIDSSGVFASRLRLLFGED 114

[Close]

BLAST of Carg08644 vs. TrEMBL
Match: tr|A0A0A0L5S3|A0A0A0L5S3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G653420 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 3.4e-41
Identity = 93/108 (86.11%), Postives = 99/108 (91.67%), Query Frame = 0


Query: 1   MAPSSPSSSAPEFQMPKKPLSLFANALKRKDSFIQFFAMTGILLLSVRSLGQKYRIHDLQ 60
           MAPS+PSSS PEFQM KKPL L+ANALKRKDSFIQ  AMTGILLLS RSLGQKYRI+DLQ
Sbjct: 1   MAPSAPSSSTPEFQMSKKPLGLYANALKRKDSFIQLLAMTGILLLSFRSLGQKYRINDLQ 60

Query: 61  EDTTALKQEQETLIDRMKNIKRSLLHEASLDSTGLFASRLRLLFTQED 109
           EDTTALKQE ETL+DRMKNIKRSLLHEASL+STG FASRLRLLF+ ED
Sbjct: 61  EDTTALKQEHETLVDRMKNIKRSLLHEASLESTGHFASRLRLLFSDED 108

[Close]

BLAST of Carg08644 vs. TrEMBL
Match: tr|A0A1S3BW63|A0A1S3BW63_CUCME (uncharacterized protein LOC103493794 OS=Cucumis melo OX=3656 GN=LOC103493794 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 9.4e-39
Identity = 88/108 (81.48%), Postives = 95/108 (87.96%), Query Frame = 0


Query: 1   MAPSSPSSSAPEFQMPKKPLSLFANALKRKDSFIQFFAMTGILLLSVRSLGQKYRIHDLQ 60
           MAPS+PSSS PEFQM KKPL  +AN LK KD  IQ  AMTGILLLS RSLGQKYRI++LQ
Sbjct: 1   MAPSAPSSSTPEFQMSKKPLGFYANVLKHKDGLIQLLAMTGILLLSCRSLGQKYRINNLQ 60

Query: 61  EDTTALKQEQETLIDRMKNIKRSLLHEASLDSTGLFASRLRLLFTQED 109
           EDTTALKQE ETL+DRMKNIKRSLLHEASL+STGLFASRLRLLF+ ED
Sbjct: 61  EDTTALKQEHETLVDRMKNIKRSLLHEASLESTGLFASRLRLLFSDED 108

[Close]

BLAST of Carg08644 vs. TrEMBL
Match: tr|A0A2N9FM99|A0A2N9FM99_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS15921 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 2.6e-33
Identity = 79/108 (73.15%), Postives = 92/108 (85.19%), Query Frame = 0


Query: 1   MAPSSPSSSAPEFQMPKKPLSLFANALKRKDSFIQFFAMTGILLLSVRSLGQKYRIHDLQ 60
           MA  +P SSA   Q PKK L+  ANA+KRKDSFIQFFAMTGILLLSVRSLGQKYRIHDLQ
Sbjct: 1   MASPAPPSSATGVQNPKKSLAFVANAIKRKDSFIQFFAMTGILLLSVRSLGQKYRIHDLQ 60

Query: 61  EDTTALKQEQETLIDRMKNIKRSLLHEASLDSTGLFASRLRLLFTQED 109
           EDT+ALK+EQ+TL +RMKNIK +LLHEASL+ +GLFA+RLR LF  ++
Sbjct: 61  EDTSALKEEQQTLTERMKNIKHTLLHEASLEPSGLFAARLRRLFADQE 108

[Close]

BLAST of Carg08644 vs. TrEMBL
Match: tr|W9RF20|W9RF20_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_011665 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 3.5e-33
Identity = 79/102 (77.45%), Postives = 89/102 (87.25%), Query Frame = 0


Query: 7   SSSAPEFQMPKKPLSLFANALKRKDSFIQFFAMTGILLLSVRSLGQKYRIHDLQEDTTAL 66
           SSSAP  + PKKPL+  ANA+KRKDSFIQFFAMTGILL+SVRSLGQKYRIHDL EDT+ L
Sbjct: 5   SSSAPPGRNPKKPLAFSANAMKRKDSFIQFFAMTGILLMSVRSLGQKYRIHDLLEDTSDL 64

Query: 67  KQEQETLIDRMKNIKRSLLHEASLDSTGLFASRLRLLFTQED 109
           K+EQE L +RMKNIKR+LLHEASL+ TG FASRLRLLF  E+
Sbjct: 65  KEEQEKLTERMKNIKRALLHEASLEPTGAFASRLRLLFGDEN 106

[Close]

BLAST of Carg08644 vs. TrEMBL
Match: tr|A0A2I4G353|A0A2I4G353_9ROSI (uncharacterized protein LOC109004280 OS=Juglans regia OX=51240 GN=LOC109004280 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 5.9e-33
Identity = 77/108 (71.30%), Postives = 91/108 (84.26%), Query Frame = 0


Query: 1   MAPSSPSSSAPEFQMPKKPLSLFANALKRKDSFIQFFAMTGILLLSVRSLGQKYRIHDLQ 60
           MA S+P  S P  Q P++ + L ANA+KRKDSFIQFFAMTGILLLS+RSLGQKYRIHDLQ
Sbjct: 1   MASSAPPRSGPGVQNPRRSMGLLANAMKRKDSFIQFFAMTGILLLSLRSLGQKYRIHDLQ 60

Query: 61  EDTTALKQEQETLIDRMKNIKRSLLHEASLDSTGLFASRLRLLFTQED 109
           EDT+AL +E++TL +RMKNIKR LLHEASLD TG  +SRLRLL+ +ED
Sbjct: 61  EDTSALIEERDTLTERMKNIKRDLLHEASLDPTGFLSSRLRLLYGEED 108

The following BLAST results are available for this feature:

BLAST of Carg08644 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023535555.1	6.8e-49	99.07	uncharacterized protein LOC111796960 [Cucurbita pepo subsp. pepo]	[more]
XP_022936518.1	1.5e-48	98.15	uncharacterized protein LOC111443106 [Cucurbita moschata]	[more]
XP_022975908.1	4.4e-48	97.22	uncharacterized protein LOC111476471 [Cucurbita maxima]	[more]
XP_022142735.1	7.8e-45	90.74	uncharacterized protein LOC111012778 [Momordica charantia] >XP_022142744.1 uncha...	[more]
XP_011654256.1	5.2e-41	86.11	PREDICTED: uncharacterized protein LOC105435327 [Cucumis sativus] >XP_011654257....	[more]

BLAST of Carg08644 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G20430.1	1.3e-25	57.02	unknown protein	[more]

BLAST of Carg08644 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg08644 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L5S3\|A0A0A0L5S3_CUCSA	3.4e-41	86.11	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G653420 PE=4 SV=1	[more]
tr\|A0A1S3BW63\|A0A1S3BW63_CUCME	9.4e-39	81.48	uncharacterized protein LOC103493794 OS=Cucumis melo OX=3656 GN=LOC103493794 PE=...	[more]
tr\|A0A2N9FM99\|A0A2N9FM99_FAGSY	2.6e-33	73.15	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS15921 PE=4 SV=1	[more]
tr\|W9RF20\|W9RF20_9ROSA	3.5e-33	77.45	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_011665 PE=4 SV=1	[more]
tr\|A0A2I4G353\|A0A2I4G353_9ROSI	5.9e-33	71.30	uncharacterized protein LOC109004280 OS=Juglans regia OX=51240 GN=LOC109004280 P...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg08644-RA	Carg08644-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36316	FAMILY NOT NAMED	coord: 1..107

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg08644	Cla007403	Watermelon (97103) v1	carwmB0103
Carg08644	Csa4G653420	Cucumber (Chinese Long) v2	carcuB0113
Carg08644	MELO3C017006	Melon (DHL92) v3.5.1	carmeB0107
Carg08644	ClCG05G015240	Watermelon (Charleston Gray)	carwcgB0105
Carg08644	CSPI04G26720	Wild cucumber (PI 183967)	carcpiB0118
Carg08644	Cucsa.271940	Cucumber (Gy14) v1	carcgyB0125
Carg08644	CmaCh09G000710	Cucurbita maxima (Rimu)	carcmaB0134
Carg08644	CmoCh09G000720	Cucurbita moschata (Rifu)	carcmoB0144
Carg08644	MELO3C017006.2	Melon (DHL92) v3.6.1	carmedB0109
Carg08644	CsaV3_4G037080	Cucumber (Chinese Long) v3	carcucB0122
Carg08644	Cla97C05G096340	Watermelon (97103) v2	carwmbB0108
Carg08644	Bhi09G002420	Wax gourd	carwgoB0119

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg08644	Silver-seed gourd	carcarB120
Carg08644	Silver-seed gourd	carcarB122
Carg08644	Cucumber (Gy14) v2	carcgybB0113
Carg08644	Cucurbita maxima (Rimu)	carcmaB0136
Carg08644	Cucurbita moschata (Rifu)	carcmoB0146
Carg08644	Cucurbita pepo (Zucchini)	carcpeB0153
Carg08644	Cucurbita pepo (Zucchini)	carcpeB0154
Carg08644	Bottle gourd (USVL1VR-Ls)	carlsiB094
Carg08644	Watermelon (97103) v1	carwmB0102