CsaV3_4G007410 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G007410
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Description60S ribosomal protein L27
Locationchr4 : 5056953 .. 5058621 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCAGTTGAAAATGCCCTAAAACCCAATATGTTGAGATAACCTAAATCTACGCCCCCTCTCTTGTTGAAGAAGAGCCGTCATAGAAGGGGAAGTACAGAGTGGAGGAGAAATCCGAAAATGGTGAAATTCCTCAAGCCCAACAAAGCCGTCATCGTCCTCCAAGGCCGTTACGCCGGTCGGAAGGCGGTCATCGTTCGCGCCTTTGACGACGGTACCCGGGATCGTGCTTATGGCCACTGTTTAGTCGCTGGAATCAAGAAGTACCCGGCCAAGGTCATCCGCAAGGACTCCGCCAAGAAAACCGCCAAAAAATCTCGAGTCAAGGCCTTTGTCAAGCTCGTCAACTACAGGCACCTGATGCCCACAAGGTACACTCTCGATGTCGATCTTAAAGACGTTGTCACTATTGATTCATTGCAGTCAAAAGACAAGAAGGTGACTGCCGCCAAGGAGACTAAGAAGAGGTTCGAGGAAAGGTTCAAAACCGGGAAGAACAGGTGGTTTTTCACCAAGCTCAGGTTTTGAAGTGGCTGCTTCAATTATGGGTTTGTTCTGCATTACTCTCTTGTTAGGTTAACTGAACAACCTTATTTTTTGTTTTTGAGCTATCGTACGTTTTACATTACGAGTTTAGTTTGATTTGGTGTTATGGATTGTGTGCAAATTACATTTCCATCAGTTGAATTTATATTTAATACTTAATGTCTGAAGCCCGTGGATAGTTGCAAATATTCTTCTGGCTATTTTTGTTGTAGTTTGATAAGAGTTACTTTTACGCATATAAGAACTTAAATGAACAAATTTGATGTTTTAATGATTTTCATTAGGGGTTTATTAGCTGATTTTCTATGTCTGATGACATTATTACTACATGTTTGCAACCAAATTTTGTACAAGTTCATATCACTCTTAGTGATAAAGAAGATGTTTGTAAGTGCTAGAAAACTGTTTATAAACACATGGAAAGTTAATCCAAAAGTTTTGAACTATTATCTTTAGCATGTTGATGAACAAATATCGAAATTGGTTATGTGCCTTTATTTGATGGATCTCATATACCTGTCCTTGATCTTTTGTTATCCATTTTGTTATGTCACAATCTCTCTGAATAACACACATATAGGAGAAAGTTGAAAATGTTATTCGAATGTTTTCAAATCAAATCCATGTTGAAACTGAGCACCTTGAGAACGGTCTCTTGTGATCCTTAAAATATATTATCAAACGGTCGATTCTTTTCCCTTATATTACACTTTCAAAATGGACTTTAATTTGCATGATGCCAAGTATTTGCTTTCAACTTCTATTTTGGGATACCATGTTACTTCAACTGGTAACTTACCGTGTAAGTTTCAATCTATTATCTATGCTTTGCTTGCGTTCATCTTCTCAAACATTTTGTCTTTGTTAATCAGAGAATAGACTGATTAGTTGCTAGTATACGTCTGCTATTTCATTAGTTTCCATTGCATTGGTTAATCCATGTATTGTGAATTTTCTATTGCATTTCATTTCGTTGTCTTGGTATATTCTACTAATGCATTGAATGCATGTTTAGGTCTTGGTAGATGGCCTAGAGGGGAATATGATAGCTTAATTATATCTTTAGGGCAATTTAGTTTAGTTTATTTAAACTTACAACTCAAAAGTAATTTATAGTTGCTTTGG

mRNA sequence

ATGGTGAAATTCCTCAAGCCCAACAAAGCCGTCATCGTCCTCCAAGGCCGTTACGCCGGTCGGAAGGCGGTCATCGTTCGCGCCTTTGACGACGGTACCCGGGATCGTGCTTATGGCCACTGTTTAGTCGCTGGAATCAAGAAGTACCCGGCCAAGGTCATCCGCAAGGACTCCGCCAAGAAAACCGCCAAAAAATCTCGAGTCAAGGCCTTTGTCAAGCTCGTCAACTACAGGCACCTGATGCCCACAAGGTACACTCTCGATGTCGATCTTAAAGACGTTGTCACTATTGATTCATTGCAGTCAAAAGACAAGAAGGTGACTGCCGCCAAGGAGACTAAGAAGAGGTTCGAGGAAAGGTTCAAAACCGGGAAGAACAGGTGGTTTTTCACCAAGCTCAGGTTTTGA

Coding sequence (CDS)

ATGGTGAAATTCCTCAAGCCCAACAAAGCCGTCATCGTCCTCCAAGGCCGTTACGCCGGTCGGAAGGCGGTCATCGTTCGCGCCTTTGACGACGGTACCCGGGATCGTGCTTATGGCCACTGTTTAGTCGCTGGAATCAAGAAGTACCCGGCCAAGGTCATCCGCAAGGACTCCGCCAAGAAAACCGCCAAAAAATCTCGAGTCAAGGCCTTTGTCAAGCTCGTCAACTACAGGCACCTGATGCCCACAAGGTACACTCTCGATGTCGATCTTAAAGACGTTGTCACTATTGATTCATTGCAGTCAAAAGACAAGAAGGTGACTGCCGCCAAGGAGACTAAGAAGAGGTTCGAGGAAAGGTTCAAAACCGGGAAGAACAGGTGGTTTTTCACCAAGCTCAGGTTTTGA

Protein sequence

MVKFLKPNKAVIVLQGRYAGRKAVIVRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKKSRVKAFVKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
Homology
[Close]
BLAST of CsaV3_4G007410 vs. NCBI nr
Match: XP_004147739.1 (PREDICTED: 60S ribosomal protein L27 [Cucumis sativus] >KGN53499.1 hypothetical protein Csa_4G061860 [Cucumis sativus])

HSP 1 Score: 262.7 bits (670), Expect = 7.0e-67
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0 

Query: 1   MVKFLKPNKAVIVLQGRYAGRKAVIVRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60
           MVKFLKPNKAVIVLQGRYAGRKAVIVRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK
Sbjct: 1   MVKFLKPNKAVIVLQGRYAGRKAVIVRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60

Query: 61  KTAKKSRVKAFVKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVKAFVKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER
Sbjct: 61  KTAKKSRVKAFVKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]
BLAST of CsaV3_4G007410 vs. NCBI nr
Match: XP_004147740.1 (PREDICTED: 60S ribosomal protein L27-like [Cucumis sativus] >KGN53500.1 hypothetical protein Csa_4G062360 [Cucumis sativus])

HSP 1 Score: 261.5 bits (667), Expect = 1.5e-66
Identity = 132/135 (97.78%), Postives = 135/135 (100.00%), Query Frame = 0 

Query: 1   MVKFLKPNKAVIVLQGRYAGRKAVIVRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60
           MVKFLKPNKAVIVLQGRYAGRKAVI+RAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK
Sbjct: 1   MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60

Query: 61  KTAKKSRVKAFVKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVKAF+KLVNYRHLMPTRYTLDVDLKDVVT+DSLQSKDKKVTAAKETKKRFEER
Sbjct: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]
BLAST of CsaV3_4G007410 vs. NCBI nr
Match: XP_008451854.1 (PREDICTED: 60S ribosomal protein L27 [Cucumis melo] >XP_008451855.1 PREDICTED: 60S ribosomal protein L27 [Cucumis melo])

HSP 1 Score: 261.2 bits (666), Expect = 2.0e-66
Identity = 134/135 (99.26%), Postives = 135/135 (100.00%), Query Frame = 0 

Query: 1   MVKFLKPNKAVIVLQGRYAGRKAVIVRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60
           MVKFLKPNKAVIVLQGRYAGRKAVIVRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK
Sbjct: 1   MVKFLKPNKAVIVLQGRYAGRKAVIVRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60

Query: 61  KTAKKSRVKAFVKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVKAFVKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKV+AAKETKKRFEER
Sbjct: 61  KTAKKSRVKAFVKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVSAAKETKKRFEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]
BLAST of CsaV3_4G007410 vs. NCBI nr
Match: XP_008451849.1 (PREDICTED: 60S ribosomal protein L27-like [Cucumis melo])

HSP 1 Score: 260.4 bits (664), Expect = 3.5e-66
Identity = 132/135 (97.78%), Postives = 135/135 (100.00%), Query Frame = 0 

Query: 1   MVKFLKPNKAVIVLQGRYAGRKAVIVRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60
           MVKFLKPNKAVIVLQGRYAGRKAVI+RAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK
Sbjct: 1   MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60

Query: 61  KTAKKSRVKAFVKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVKAF+KLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKV+AAKETKKRFEER
Sbjct: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVSAAKETKKRFEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]
BLAST of CsaV3_4G007410 vs. NCBI nr
Match: XP_022942298.1 (60S ribosomal protein L27-2-like [Cucurbita moschata] >XP_022931548.1 60S ribosomal protein L27-2-like [Cucurbita moschata] >XP_022983312.1 60S ribosomal protein L27-2-like [Cucurbita maxima] >XP_022985030.1 60S ribosomal protein L27-2-like [Cucurbita maxima] >XP_023521538.1 60S ribosomal protein L27-2-like [Cucurbita pepo subsp. pepo] >XP_023548326.1 60S ribosomal protein L27-2-like [Cucurbita pepo subsp. pepo] >XP_023551847.1 60S ribosomal protein L27-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 257.7 bits (657), Expect = 2.2e-65
Identity = 131/135 (97.04%), Postives = 134/135 (99.26%), Query Frame = 0 

Query: 1   MVKFLKPNKAVIVLQGRYAGRKAVIVRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60
           MVKFLK NKAVIVLQGRYAGRKAVI+RAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDS+K
Sbjct: 1   MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60

Query: 61  KTAKKSRVKAFVKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVKAF+KLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER
Sbjct: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]
BLAST of CsaV3_4G007410 vs. TAIR10
Match: AT3G22230.1 (Ribosomal L27e protein family)

HSP 1 Score: 228.8 bits (582), Expect = 2.0e-60
Identity = 112/135 (82.96%), Postives = 126/135 (93.33%), Query Frame = 0 

Query: 1   MVKFLKPNKAVIVLQGRYAGRKAVIVRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60
           MVKFLK NKAVI+LQGRYAG+KAVI+++FDDGT DR YGHCLVAG+KKYP+KVIRKDSAK
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGTSDRRYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTAKKSRVKAFVKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVK F+KLVNY+HLMPTRYTLDVDLK+V T+D+L+SKDKKVTA KE K + EER
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALKSKDKKVTALKEAKAKLEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]
BLAST of CsaV3_4G007410 vs. TAIR10
Match: AT4G15000.1 (Ribosomal L27e protein family)

HSP 1 Score: 228.8 bits (582), Expect = 2.0e-60
Identity = 112/135 (82.96%), Postives = 125/135 (92.59%), Query Frame = 0 

Query: 1   MVKFLKPNKAVIVLQGRYAGRKAVIVRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60
           MVKFLK NKAVI+LQGRYAG+KAVI+++FDDG RDR YGHCLVAG+KKYP+KVIRKDSAK
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGNRDRPYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTAKKSRVKAFVKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVK F+KLVNY+HLMPTRYTLDVDLK+V T+D+LQSKDKKV A KE K + EER
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALQSKDKKVAALKEAKAKLEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]
BLAST of CsaV3_4G007410 vs. TAIR10
Match: AT2G32220.1 (Ribosomal L27e protein family)

HSP 1 Score: 215.3 bits (547), Expect = 2.3e-56
Identity = 104/135 (77.04%), Postives = 123/135 (91.11%), Query Frame = 0 

Query: 1   MVKFLKPNKAVIVLQGRYAGRKAVIVRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60
           MVK +KP KAVI+LQGRY G+KAVIV++FDDGT ++ YGHCLVAG+KKYP+KVIRKDSAK
Sbjct: 1   MVKCMKPGKAVILLQGRYTGKKAVIVKSFDDGTVEKKYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTAKKSRVKAFVKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVK F K++NY+H+MPTRYTLD+DLK+VV+ D++ SKDKKVTA KE K +FEER
Sbjct: 61  KTAKKSRVKCFFKVINYQHVMPTRYTLDLDLKNVVSADAISSKDKKVTALKEAKAKFEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]
BLAST of CsaV3_4G007410 vs. Swiss-Prot
Match: sp|Q05462|RL27_PEA (60S ribosomal protein L27 OS=Pisum sativum OX=3888 GN=RPL27 PE=2 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 2.5e-60
Identity = 117/135 (86.67%), Postives = 126/135 (93.33%), Query Frame = 0 

Query: 1   MVKFLKPNKAVIVLQGRYAGRKAVIVRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60
           MVKFLKPNKAVI+LQGRYAG+KAVIV+ FDDGTR++ YGHCLVAGIKK+P+KVI+KDSAK
Sbjct: 1   MVKFLKPNKAVILLQGRYAGKKAVIVKTFDDGTREKPYGHCLVAGIKKFPSKVIKKDSAK 60

Query: 61  KTAKKSRVKAFVKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVKAFVKLVNY+HLMPTRYTLDVDLKD V  D LQSKDKKVTA KETKK  EER
Sbjct: 61  KTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDAVVPDVLQSKDKKVTALKETKKSLEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]
BLAST of CsaV3_4G007410 vs. Swiss-Prot
Match: sp|Q8LCL3|RL272_ARATH (60S ribosomal protein L27-2 OS=Arabidopsis thaliana OX=3702 GN=RPL27B PE=2 SV=2)

HSP 1 Score: 228.8 bits (582), Expect = 3.6e-59
Identity = 112/135 (82.96%), Postives = 126/135 (93.33%), Query Frame = 0 

Query: 1   MVKFLKPNKAVIVLQGRYAGRKAVIVRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60
           MVKFLK NKAVI+LQGRYAG+KAVI+++FDDGT DR YGHCLVAG+KKYP+KVIRKDSAK
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGTSDRRYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTAKKSRVKAFVKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVK F+KLVNY+HLMPTRYTLDVDLK+V T+D+L+SKDKKVTA KE K + EER
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALKSKDKKVTALKEAKAKLEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]
BLAST of CsaV3_4G007410 vs. Swiss-Prot
Match: sp|P51419|RL273_ARATH (60S ribosomal protein L27-3 OS=Arabidopsis thaliana OX=3702 GN=RPL27C PE=2 SV=2)

HSP 1 Score: 228.8 bits (582), Expect = 3.6e-59
Identity = 112/135 (82.96%), Postives = 125/135 (92.59%), Query Frame = 0 

Query: 1   MVKFLKPNKAVIVLQGRYAGRKAVIVRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60
           MVKFLK NKAVI+LQGRYAG+KAVI+++FDDG RDR YGHCLVAG+KKYP+KVIRKDSAK
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGNRDRPYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTAKKSRVKAFVKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVK F+KLVNY+HLMPTRYTLDVDLK+V T+D+LQSKDKKV A KE K + EER
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALQSKDKKVAALKEAKAKLEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]
BLAST of CsaV3_4G007410 vs. Swiss-Prot
Match: sp|Q9SKX8|RL271_ARATH (60S ribosomal protein L27-1 OS=Arabidopsis thaliana OX=3702 GN=RPL27A PE=2 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 4.2e-55
Identity = 104/135 (77.04%), Postives = 123/135 (91.11%), Query Frame = 0 

Query: 1   MVKFLKPNKAVIVLQGRYAGRKAVIVRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60
           MVK +KP KAVI+LQGRY G+KAVIV++FDDGT ++ YGHCLVAG+KKYP+KVIRKDSAK
Sbjct: 1   MVKCMKPGKAVILLQGRYTGKKAVIVKSFDDGTVEKKYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTAKKSRVKAFVKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVK F K++NY+H+MPTRYTLD+DLK+VV+ D++ SKDKKVTA KE K +FEER
Sbjct: 61  KTAKKSRVKCFFKVINYQHVMPTRYTLDLDLKNVVSADAISSKDKKVTALKEAKAKFEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]
BLAST of CsaV3_4G007410 vs. Swiss-Prot
Match: sp|P41101|RL27_SOLTU (60S ribosomal protein L27 OS=Solanum tuberosum OX=4113 GN=RPL27 PE=2 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 1.3e-53
Identity = 110/139 (79.14%), Postives = 119/139 (85.61%), Query Frame = 0 

Query: 1   MVKFLKPNKAVIVLQGRYAGRKAVIVRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60
           M KFLKPNKAVI+LQG+YAGRKAVIVRAFD+GTRDR YGHCLVAGI +YP KVIRKDSAK
Sbjct: 1   MEKFLKPNKAVILLQGKYAGRKAVIVRAFDEGTRDRPYGHCLVAGISRYPKKVIRKDSAK 60

Query: 61  KTAKKSRVKAFVKLVNYRHLMPTRYTLDVDL----KDVVTIDSLQSKDKKVTAAKETKKR 120
           K  KKSRVKAF+KLVNY H+MPTRYTLD DL    KDVV  D LQ++DKKVT A+ TK R
Sbjct: 61  KAGKKSRVKAFIKLVNYNHIMPTRYTLDEDLKDVVKDVVNADVLQARDKKVT-ARRTKAR 120

Query: 121 FEERFKTGKNRWFFTKLRF 136
             ERFKTGKNRWFFTKLRF
Sbjct: 121 LAERFKTGKNRWFFTKLRF 138

[Close]
BLAST of CsaV3_4G007410 vs. TrEMBL
Match: tr|A0A0A0KXF9|A0A0A0KXF9_CUCSA (60S ribosomal protein L27 OS=Cucumis sativus OX=3659 GN=Csa_4G061860 PE=3 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 4.6e-67
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0 

Query: 1   MVKFLKPNKAVIVLQGRYAGRKAVIVRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60
           MVKFLKPNKAVIVLQGRYAGRKAVIVRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK
Sbjct: 1   MVKFLKPNKAVIVLQGRYAGRKAVIVRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60

Query: 61  KTAKKSRVKAFVKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVKAFVKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER
Sbjct: 61  KTAKKSRVKAFVKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]
BLAST of CsaV3_4G007410 vs. TrEMBL
Match: tr|A0A0A0KVB4|A0A0A0KVB4_CUCSA (60S ribosomal protein L27 OS=Cucumis sativus OX=3659 GN=Csa_4G062360 PE=3 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 1.0e-66
Identity = 132/135 (97.78%), Postives = 135/135 (100.00%), Query Frame = 0 

Query: 1   MVKFLKPNKAVIVLQGRYAGRKAVIVRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60
           MVKFLKPNKAVIVLQGRYAGRKAVI+RAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK
Sbjct: 1   MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60

Query: 61  KTAKKSRVKAFVKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVKAF+KLVNYRHLMPTRYTLDVDLKDVVT+DSLQSKDKKVTAAKETKKRFEER
Sbjct: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]
BLAST of CsaV3_4G007410 vs. TrEMBL
Match: tr|A0A1S3BSF6|A0A1S3BSF6_CUCME (60S ribosomal protein L27 OS=Cucumis melo OX=3656 GN=LOC103493018 PE=3 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 1.3e-66
Identity = 134/135 (99.26%), Postives = 135/135 (100.00%), Query Frame = 0 

Query: 1   MVKFLKPNKAVIVLQGRYAGRKAVIVRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60
           MVKFLKPNKAVIVLQGRYAGRKAVIVRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK
Sbjct: 1   MVKFLKPNKAVIVLQGRYAGRKAVIVRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60

Query: 61  KTAKKSRVKAFVKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVKAFVKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKV+AAKETKKRFEER
Sbjct: 61  KTAKKSRVKAFVKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVSAAKETKKRFEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]
BLAST of CsaV3_4G007410 vs. TrEMBL
Match: tr|A0A1S3BT89|A0A1S3BT89_CUCME (60S ribosomal protein L27 OS=Cucumis melo OX=3656 GN=LOC103493014 PE=3 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 2.3e-66
Identity = 132/135 (97.78%), Postives = 135/135 (100.00%), Query Frame = 0 

Query: 1   MVKFLKPNKAVIVLQGRYAGRKAVIVRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60
           MVKFLKPNKAVIVLQGRYAGRKAVI+RAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK
Sbjct: 1   MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60

Query: 61  KTAKKSRVKAFVKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVKAF+KLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKV+AAKETKKRFEER
Sbjct: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVSAAKETKKRFEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]
BLAST of CsaV3_4G007410 vs. TrEMBL
Match: tr|A0A2I0K189|A0A2I0K189_PUNGR (60S ribosomal protein L27 OS=Punica granatum OX=22663 GN=CRG98_017263 PE=3 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 6.2e-64
Identity = 127/135 (94.07%), Postives = 132/135 (97.78%), Query Frame = 0 

Query: 1   MVKFLKPNKAVIVLQGRYAGRKAVIVRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60
           MVKFLKPNKAVIVLQGRYAGRKAVIVR+FDDGTRDRAYGHCLVAGIKKYP+KVIRKDSAK
Sbjct: 1   MVKFLKPNKAVIVLQGRYAGRKAVIVRSFDDGTRDRAYGHCLVAGIKKYPSKVIRKDSAK 60

Query: 61  KTAKKSRVKAFVKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVK FVKLVNYRHLMPTRYTLDVDLKD+VT D LQSKDK+VTA+KETKKRFEER
Sbjct: 61  KTAKKSRVKCFVKLVNYRHLMPTRYTLDVDLKDIVTADCLQSKDKRVTASKETKKRFEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

The following BLAST results are available for this feature:
BLAST of CsaV3_4G007410 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004147739.17.0e-67100.00PREDICTED: 60S ribosomal protein L27 [Cucumis sativus] >KGN53499.1 hypothetical ... [more]
XP_004147740.11.5e-6697.78PREDICTED: 60S ribosomal protein L27-like [Cucumis sativus] >KGN53500.1 hypothet... [more]
XP_008451854.12.0e-6699.26PREDICTED: 60S ribosomal protein L27 [Cucumis melo] >XP_008451855.1 PREDICTED: 6... [more]
XP_008451849.13.5e-6697.78PREDICTED: 60S ribosomal protein L27-like [Cucumis melo][more]
XP_022942298.12.2e-6597.0460S ribosomal protein L27-2-like [Cucurbita moschata] >XP_022931548.1 60S riboso... [more]
BLAST of CsaV3_4G007410 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G22230.12.0e-6082.96Ribosomal L27e protein family[more]
AT4G15000.12.0e-6082.96Ribosomal L27e protein family[more]
AT2G32220.12.3e-5677.04Ribosomal L27e protein family[more]
BLAST of CsaV3_4G007410 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q05462|RL27_PEA2.5e-6086.6760S ribosomal protein L27 OS=Pisum sativum OX=3888 GN=RPL27 PE=2 SV=1[more]
sp|Q8LCL3|RL272_ARATH3.6e-5982.9660S ribosomal protein L27-2 OS=Arabidopsis thaliana OX=3702 GN=RPL27B PE=2 SV=2[more]
sp|P51419|RL273_ARATH3.6e-5982.9660S ribosomal protein L27-3 OS=Arabidopsis thaliana OX=3702 GN=RPL27C PE=2 SV=2[more]
sp|Q9SKX8|RL271_ARATH4.2e-5577.0460S ribosomal protein L27-1 OS=Arabidopsis thaliana OX=3702 GN=RPL27A PE=2 SV=1[more]
sp|P41101|RL27_SOLTU1.3e-5379.1460S ribosomal protein L27 OS=Solanum tuberosum OX=4113 GN=RPL27 PE=2 SV=1[more]
BLAST of CsaV3_4G007410 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KXF9|A0A0A0KXF9_CUCSA4.6e-67100.0060S ribosomal protein L27 OS=Cucumis sativus OX=3659 GN=Csa_4G061860 PE=3 SV=1[more]
tr|A0A0A0KVB4|A0A0A0KVB4_CUCSA1.0e-6697.7860S ribosomal protein L27 OS=Cucumis sativus OX=3659 GN=Csa_4G062360 PE=3 SV=1[more]
tr|A0A1S3BSF6|A0A1S3BSF6_CUCME1.3e-6699.2660S ribosomal protein L27 OS=Cucumis melo OX=3656 GN=LOC103493018 PE=3 SV=1[more]
tr|A0A1S3BT89|A0A1S3BT89_CUCME2.3e-6697.7860S ribosomal protein L27 OS=Cucumis melo OX=3656 GN=LOC103493014 PE=3 SV=1[more]
tr|A0A2I0K189|A0A2I0K189_PUNGR6.2e-6494.0760S ribosomal protein L27 OS=Punica granatum OX=22663 GN=CRG98_017263 PE=3 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR008991Translation_prot_SH3-like_sf
IPR018262Ribosomal_L27e_CS
IPR001141Ribosomal_L27e
IPR038655L27e_sf
IPR005824KOW
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0001510 RNA methylation
biological_process GO:0008150 biological_process
cellular_component GO:0005840 ribosome
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0005575 cellular_component
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G007410.1CsaV3_4G007410.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 100..120
NoneNo IPR availablePANTHERPTHR10497:SF460S RIBOSOMAL PROTEIN L27-1-RELATEDcoord: 1..135
NoneNo IPR availableCDDcd06090KOW_RPL27coord: 6..88
e-value: 6.3548E-40
score: 129.996
IPR005824KOWSMARTSM00739kow_9coord: 4..31
e-value: 0.0046
score: 26.2
IPR005824KOWPFAMPF00467KOWcoord: 7..36
e-value: 6.2E-5
score: 22.7
IPR038655Ribosomal protein L27e superfamilyGENE3DG3DSA:2.30.30.770coord: 1..135
e-value: 2.4E-57
score: 194.7
IPR001141Ribosomal protein L27ePFAMPF01777Ribosomal_L27ecoord: 52..135
e-value: 6.2E-32
score: 109.7
IPR001141Ribosomal protein L27ePANTHERPTHR1049760S RIBOSOMAL PROTEIN L27coord: 1..135
IPR001141Ribosomal protein L27ePRODOMPD009396coord: 60..135
e-value: 5.0E-24
score: 270.0
IPR018262Ribosomal protein L27e, conserved sitePROSITEPS01107RIBOSOMAL_L27Ecoord: 124..135
IPR008991Translation protein SH3-like domain superfamilySUPERFAMILYSSF50104Translation proteins SH3-like domaincoord: 2..135

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_4G007410CSPI04G07180Wild cucumber (PI 183967)cpicucB213
CsaV3_4G007410CSPI04G21960Wild cucumber (PI 183967)cpicucB226
CsaV3_4G007410Cucsa.179990Cucumber (Gy14) v1cgycucB289
CsaV3_4G007410CmaCh16G004850Cucurbita maxima (Rimu)cmacucB0393
CsaV3_4G007410CmaCh04G006160Cucurbita maxima (Rimu)cmacucB0841
CsaV3_4G007410CmoCh16G005260Cucurbita moschata (Rifu)cmocucB0388
CsaV3_4G007410CmoCh01G013880Cucurbita moschata (Rifu)cmocucB0560
CsaV3_4G007410CmoCh04G006620Cucurbita moschata (Rifu)cmocucB0827
CsaV3_4G007410CsGy4G007090Cucumber (Gy14) v2cgybcucB171
CsaV3_4G007410CsGy4G020470Cucumber (Gy14) v2cgybcucB176
CsaV3_4G007410Cla005436Watermelon (97103) v1cucwmB323
CsaV3_4G007410MELO3C016198Melon (DHL92) v3.5.1cucmeB317
CsaV3_4G007410ClCG11G016790Watermelon (Charleston Gray)cucwcgB295
CsaV3_4G007410ClCG07G010880Watermelon (Charleston Gray)cucwcgB343
CsaV3_4G007410Lsi04G019210Bottle gourd (USVL1VR-Ls)cuclsiB317
CsaV3_4G007410Lsi07G008010Bottle gourd (USVL1VR-Ls)cuclsiB323
CsaV3_4G007410MELO3C016199.2Melon (DHL92) v3.6.1cucmedB309
CsaV3_4G007410Cla97C07G137620Watermelon (97103) v2cucwmbB329
CsaV3_4G007410Bhi01G002384Wax gourdcucwgoB370
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CsaV3_4G007410CsaV3_4G032310Cucumber (Chinese Long) v3cuccucB166
The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G007410Silver-seed gourdcarcucB0052
CsaV3_4G007410Silver-seed gourdcarcucB0689
CsaV3_4G007410Cucurbita pepo (Zucchini)cpecucB0266
CsaV3_4G007410Cucurbita pepo (Zucchini)cpecucB0496