CmaCh16G004850 (gene) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTGAAGTTCCTCAAGCAGAACAAAGCCGTGATCATCCTTCAAGGCCGTTACGCCGGCCGGAAGGCGGTCATTATTCGCGCGTTCGATGACGGAACGCGTGATAGGGCTTATGGCCACTGCTTGGTTGCCGGGATAAAAAAGTATCCGGCGAAAGTCATCCGAAAGGACTCCTCCAAGAAGACTGCTAAGAAATCCCGTGTCAAGGCCTTTATCAAGATCGTCAATTACAGGCACTTGATGCCTACCAGGTATACTCTCGATGTCGATCTTAAAGATGTTGTCACTATTGATTCATTGCAATCCAAGGACAAGAAGGTCACTGCTGCTAAGGAGACCAAGAAGAGGTTTGAGGAAAGGTTCAAAACCGGGAAGAACAGGTGGTTTTTCACCAAACTCAGGTTCTAA ATGGTGAAGTTCCTCAAGCAGAACAAAGCCGTGATCATCCTTCAAGGCCGTTACGCCGGCCGGAAGGCGGTCATTATTCGCGCGTTCGATGACGGAACGCGTGATAGGGCTTATGGCCACTGCTTGGTTGCCGGGATAAAAAAGTATCCGGCGAAAGTCATCCGAAAGGACTCCTCCAAGAAGACTGCTAAGAAATCCCGTGTCAAGGCCTTTATCAAGATCGTCAATTACAGGCACTTGATGCCTACCAGGTATACTCTCGATGTCGATCTTAAAGATGTTGTCACTATTGATTCATTGCAATCCAAGGACAAGAAGGTCACTGCTGCTAAGGAGACCAAGAAGAGGTTTGAGGAAAGGTTCAAAACCGGGAAGAACAGGTGGTTTTTCACCAAACTCAGGTTCTAA ATGGTGAAGTTCCTCAAGCAGAACAAAGCCGTGATCATCCTTCAAGGCCGTTACGCCGGCCGGAAGGCGGTCATTATTCGCGCGTTCGATGACGGAACGCGTGATAGGGCTTATGGCCACTGCTTGGTTGCCGGGATAAAAAAGTATCCGGCGAAAGTCATCCGAAAGGACTCCTCCAAGAAGACTGCTAAGAAATCCCGTGTCAAGGCCTTTATCAAGATCGTCAATTACAGGCACTTGATGCCTACCAGGTATACTCTCGATGTCGATCTTAAAGATGTTGTCACTATTGATTCATTGCAATCCAAGGACAAGAAGGTCACTGCTGCTAAGGAGACCAAGAAGAGGTTTGAGGAAAGGTTCAAAACCGGGAAGAACAGGTGGTTTTTCACCAAACTCAGGTTCTAA MVKFLKQNKAVIILQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKIVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
BLAST of CmaCh16G004850 vs. Swiss-Prot
Match: RL273_ARATH (60S ribosomal protein L27-3 OS=Arabidopsis thaliana GN=RPL27C PE=2 SV=2) HSP 1 Score: 229.6 bits (584), Expect = 2.1e-59 Identity = 113/135 (83.70%), Postives = 126/135 (93.33%), Query Frame = 1
BLAST of CmaCh16G004850 vs. Swiss-Prot
Match: RL272_ARATH (60S ribosomal protein L27-2 OS=Arabidopsis thaliana GN=RPL27B PE=2 SV=2) HSP 1 Score: 229.6 bits (584), Expect = 2.1e-59 Identity = 113/135 (83.70%), Postives = 127/135 (94.07%), Query Frame = 1
BLAST of CmaCh16G004850 vs. Swiss-Prot
Match: RL27_PEA (60S ribosomal protein L27 OS=Pisum sativum GN=RPL27 PE=2 SV=1) HSP 1 Score: 226.5 bits (576), Expect = 1.8e-58 Identity = 112/135 (82.96%), Postives = 125/135 (92.59%), Query Frame = 1
BLAST of CmaCh16G004850 vs. Swiss-Prot
Match: RL271_ARATH (60S ribosomal protein L27-1 OS=Arabidopsis thaliana GN=RPL27A PE=2 SV=1) HSP 1 Score: 211.5 bits (537), Expect = 5.9e-54 Identity = 101/135 (74.81%), Postives = 122/135 (90.37%), Query Frame = 1
BLAST of CmaCh16G004850 vs. Swiss-Prot
Match: RL27_SOLTU (60S ribosomal protein L27 OS=Solanum tuberosum GN=RPL27 PE=2 SV=1) HSP 1 Score: 204.5 bits (519), Expect = 7.2e-52 Identity = 107/139 (76.98%), Postives = 118/139 (84.89%), Query Frame = 1
BLAST of CmaCh16G004850 vs. TrEMBL
Match: A0A0A0KVB4_CUCSA (60S ribosomal protein L27 OS=Cucumis sativus GN=Csa_4G062360 PE=3 SV=1) HSP 1 Score: 256.1 bits (653), Expect = 2.3e-65 Identity = 130/135 (96.30%), Postives = 134/135 (99.26%), Query Frame = 1
BLAST of CmaCh16G004850 vs. TrEMBL
Match: A0A0A0KXF9_CUCSA (60S ribosomal protein L27 OS=Cucumis sativus GN=Csa_4G061860 PE=3 SV=1) HSP 1 Score: 255.8 bits (652), Expect = 3.0e-65 Identity = 129/135 (95.56%), Postives = 134/135 (99.26%), Query Frame = 1
BLAST of CmaCh16G004850 vs. TrEMBL
Match: W9SC93_9ROSA (60S ribosomal protein L27 OS=Morus notabilis GN=L484_017735 PE=3 SV=1) HSP 1 Score: 242.3 bits (617), Expect = 3.5e-61 Identity = 121/135 (89.63%), Postives = 130/135 (96.30%), Query Frame = 1
BLAST of CmaCh16G004850 vs. TrEMBL
Match: I3NMK9_HEVBR (60S ribosomal protein L27 OS=Hevea brasiliensis GN=RPL27C PE=2 SV=1) HSP 1 Score: 240.7 bits (613), Expect = 1.0e-60 Identity = 120/135 (88.89%), Postives = 131/135 (97.04%), Query Frame = 1
BLAST of CmaCh16G004850 vs. TrEMBL
Match: A0A0D2PJQ1_GOSRA (60S ribosomal protein L27 OS=Gossypium raimondii GN=B456_001G213400 PE=3 SV=1) HSP 1 Score: 240.7 bits (613), Expect = 1.0e-60 Identity = 119/135 (88.15%), Postives = 130/135 (96.30%), Query Frame = 1
BLAST of CmaCh16G004850 vs. TAIR10
Match: AT3G22230.1 (AT3G22230.1 Ribosomal L27e protein family) HSP 1 Score: 229.6 bits (584), Expect = 1.2e-60 Identity = 113/135 (83.70%), Postives = 127/135 (94.07%), Query Frame = 1
BLAST of CmaCh16G004850 vs. TAIR10
Match: AT4G15000.1 (AT4G15000.1 Ribosomal L27e protein family) HSP 1 Score: 229.6 bits (584), Expect = 1.2e-60 Identity = 113/135 (83.70%), Postives = 126/135 (93.33%), Query Frame = 1
BLAST of CmaCh16G004850 vs. TAIR10
Match: AT2G32220.1 (AT2G32220.1 Ribosomal L27e protein family) HSP 1 Score: 211.5 bits (537), Expect = 3.3e-55 Identity = 101/135 (74.81%), Postives = 122/135 (90.37%), Query Frame = 1
BLAST of CmaCh16G004850 vs. NCBI nr
Match: gi|449460012|ref|XP_004147740.1| (PREDICTED: 60S ribosomal protein L27-like [Cucumis sativus]) HSP 1 Score: 256.1 bits (653), Expect = 3.3e-65 Identity = 130/135 (96.30%), Postives = 134/135 (99.26%), Query Frame = 1
BLAST of CmaCh16G004850 vs. NCBI nr
Match: gi|449460010|ref|XP_004147739.1| (PREDICTED: 60S ribosomal protein L27 [Cucumis sativus]) HSP 1 Score: 255.8 bits (652), Expect = 4.3e-65 Identity = 129/135 (95.56%), Postives = 134/135 (99.26%), Query Frame = 1
BLAST of CmaCh16G004850 vs. NCBI nr
Match: gi|659101899|ref|XP_008451849.1| (PREDICTED: 60S ribosomal protein L27-like [Cucumis melo]) HSP 1 Score: 255.0 bits (650), Expect = 7.4e-65 Identity = 130/135 (96.30%), Postives = 134/135 (99.26%), Query Frame = 1
BLAST of CmaCh16G004850 vs. NCBI nr
Match: gi|659101908|ref|XP_008451854.1| (PREDICTED: 60S ribosomal protein L27 [Cucumis melo]) HSP 1 Score: 254.2 bits (648), Expect = 1.3e-64 Identity = 128/135 (94.81%), Postives = 134/135 (99.26%), Query Frame = 1
BLAST of CmaCh16G004850 vs. NCBI nr
Match: gi|1009127812|ref|XP_015880894.1| (PREDICTED: 60S ribosomal protein L27-3 [Ziziphus jujuba]) HSP 1 Score: 243.0 bits (619), Expect = 2.9e-61 Identity = 119/135 (88.15%), Postives = 132/135 (97.78%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene:
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