CmoCh04G006620 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G006620
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	60S ribosomal protein L27
Location	Cmo_Chr04 : 3294916 .. 3295323 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAAATTCCTCAAGCAGAACAAGGCCGTCATCGTCCTTCAAGGCCGTTACGCTGGCCGGAAAGCGGTCATCATTCGTGCCTTCGACGATGGGACTCGGGATCGTGCTTATGGCCACTGCTTGGTCGCCGGAATCAAGAAGTATCCGGCGAAGGTAATTCGCAAGGACTCTTCTAAGAAGACTGCTAAGAAGTCCAGAGTCAAGGCCTTCATCAAGCTTGTTAATTACAGACACCTAATGCCCACCAGGTACACTCTCGATGTGGATCTTAAGGACGTGGTTACCATCGATAGCTTGCAGTCGAAGGACAAGAAGGTTACGGCCGCTAAGGAGACCAAGAAGAGATTCGAGGAGAGGTTCAAGACCGGGAAGAACAGGTGGTTTTTCACCAAGCTCAGGTTCTGA

mRNA sequence

ATGGTGAAATTCCTCAAGCAGAACAAGGCCGTCATCGTCCTTCAAGGCCGTTACGCTGGCCGGAAAGCGGTCATCATTCGTGCCTTCGACGATGGGACTCGGGATCGTGCTTATGGCCACTGCTTGGTCGCCGGAATCAAGAAGTATCCGGCGAAGGTAATTCGCAAGGACTCTTCTAAGAAGACTGCTAAGAAGTCCAGAGTCAAGGCCTTCATCAAGCTTGTTAATTACAGACACCTAATGCCCACCAGGTACACTCTCGATGTGGATCTTAAGGACGTGGTTACCATCGATAGCTTGCAGTCGAAGGACAAGAAGGTTACGGCCGCTAAGGAGACCAAGAAGAGATTCGAGGAGAGGTTCAAGACCGGGAAGAACAGGTGGTTTTTCACCAAGCTCAGGTTCTGA

Coding sequence (CDS)

ATGGTGAAATTCCTCAAGCAGAACAAGGCCGTCATCGTCCTTCAAGGCCGTTACGCTGGCCGGAAAGCGGTCATCATTCGTGCCTTCGACGATGGGACTCGGGATCGTGCTTATGGCCACTGCTTGGTCGCCGGAATCAAGAAGTATCCGGCGAAGGTAATTCGCAAGGACTCTTCTAAGAAGACTGCTAAGAAGTCCAGAGTCAAGGCCTTCATCAAGCTTGTTAATTACAGACACCTAATGCCCACCAGGTACACTCTCGATGTGGATCTTAAGGACGTGGTTACCATCGATAGCTTGCAGTCGAAGGACAAGAAGGTTACGGCCGCTAAGGAGACCAAGAAGAGATTCGAGGAGAGGTTCAAGACCGGGAAGAACAGGTGGTTTTTCACCAAGCTCAGGTTCTGA

Homology

[Close]

BLAST of CmoCh04G006620 vs. Swiss-Prot
Match: RL273_ARATH (60S ribosomal protein L27-3 OS=Arabidopsis thaliana GN=RPL27C PE=2 SV=2)

HSP 1 Score: 229.6 bits (584), Expect = 2.1e-59
Identity = 114/135 (84.44%), Postives = 126/135 (93.33%), Query Frame = 1


Query: 1   MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60
           MVKFLKQNKAVI+LQGRYAG+KAVII++FDDG RDR YGHCLVAG+KKYP+KVIRKDS+K
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGNRDRPYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVK FIKLVNY+HLMPTRYTLDVDLK+V T+D+LQSKDKKV A KE K + EER
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALQSKDKKVAALKEAKAKLEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of CmoCh04G006620 vs. Swiss-Prot
Match: RL272_ARATH (60S ribosomal protein L27-2 OS=Arabidopsis thaliana GN=RPL27B PE=2 SV=2)

HSP 1 Score: 229.6 bits (584), Expect = 2.1e-59
Identity = 114/135 (84.44%), Postives = 127/135 (94.07%), Query Frame = 1


Query: 1   MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60
           MVKFLKQNKAVI+LQGRYAG+KAVII++FDDGT DR YGHCLVAG+KKYP+KVIRKDS+K
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGTSDRRYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVK FIKLVNY+HLMPTRYTLDVDLK+V T+D+L+SKDKKVTA KE K + EER
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALKSKDKKVTALKEAKAKLEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of CmoCh04G006620 vs. Swiss-Prot
Match: RL27_PEA (60S ribosomal protein L27 OS=Pisum sativum GN=RPL27 PE=2 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 1.8e-58
Identity = 113/135 (83.70%), Postives = 125/135 (92.59%), Query Frame = 1


Query: 1   MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60
           MVKFLK NKAVI+LQGRYAG+KAVI++ FDDGTR++ YGHCLVAGIKK+P+KVI+KDS+K
Sbjct: 1   MVKFLKPNKAVILLQGRYAGKKAVIVKTFDDGTREKPYGHCLVAGIKKFPSKVIKKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVKAF+KLVNY+HLMPTRYTLDVDLKD V  D LQSKDKKVTA KETKK  EER
Sbjct: 61  KTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDAVVPDVLQSKDKKVTALKETKKSLEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of CmoCh04G006620 vs. Swiss-Prot
Match: RL271_ARATH (60S ribosomal protein L27-1 OS=Arabidopsis thaliana GN=RPL27A PE=2 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 1.7e-53
Identity = 101/135 (74.81%), Postives = 122/135 (90.37%), Query Frame = 1


Query: 1   MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60
           MVK +K  KAVI+LQGRY G+KAVI+++FDDGT ++ YGHCLVAG+KKYP+KVIRKDS+K
Sbjct: 1   MVKCMKPGKAVILLQGRYTGKKAVIVKSFDDGTVEKKYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVK F K++NY+H+MPTRYTLD+DLK+VV+ D++ SKDKKVTA KE K +FEER
Sbjct: 61  KTAKKSRVKCFFKVINYQHVMPTRYTLDLDLKNVVSADAISSKDKKVTALKEAKAKFEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of CmoCh04G006620 vs. Swiss-Prot
Match: RL27_SOLTU (60S ribosomal protein L27 OS=Solanum tuberosum GN=RPL27 PE=2 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 5.5e-52
Identity = 108/139 (77.70%), Postives = 118/139 (84.89%), Query Frame = 1


Query: 1   MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60
           M KFLK NKAVI+LQG+YAGRKAVI+RAFD+GTRDR YGHCLVAGI +YP KVIRKDS+K
Sbjct: 1   MEKFLKPNKAVILLQGKYAGRKAVIVRAFDEGTRDRPYGHCLVAGISRYPKKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDL----KDVVTIDSLQSKDKKVTAAKETKKR 120
           K  KKSRVKAFIKLVNY H+MPTRYTLD DL    KDVV  D LQ++DKKVT A+ TK R
Sbjct: 61  KAGKKSRVKAFIKLVNYNHIMPTRYTLDEDLKDVVKDVVNADVLQARDKKVT-ARRTKAR 120

Query: 121 FEERFKTGKNRWFFTKLRF 136
             ERFKTGKNRWFFTKLRF
Sbjct: 121 LAERFKTGKNRWFFTKLRF 138

[Close]

BLAST of CmoCh04G006620 vs. TrEMBL
Match: A0A0A0KVB4_CUCSA (60S ribosomal protein L27 OS=Cucumis sativus GN=Csa_4G062360 PE=3 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 1.4e-65
Identity = 132/135 (97.78%), Postives = 134/135 (99.26%), Query Frame = 1


Query: 1   MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60
           MVKFLK NKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDS+K
Sbjct: 1   MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVT+DSLQSKDKKVTAAKETKKRFEER
Sbjct: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of CmoCh04G006620 vs. TrEMBL
Match: A0A0A0KXF9_CUCSA (60S ribosomal protein L27 OS=Cucumis sativus GN=Csa_4G061860 PE=3 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 1.8e-65
Identity = 131/135 (97.04%), Postives = 134/135 (99.26%), Query Frame = 1


Query: 1   MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60
           MVKFLK NKAVIVLQGRYAGRKAVI+RAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDS+K
Sbjct: 1   MVKFLKPNKAVIVLQGRYAGRKAVIVRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVKAF+KLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER
Sbjct: 61  KTAKKSRVKAFVKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of CmoCh04G006620 vs. TrEMBL
Match: W9SC93_9ROSA (60S ribosomal protein L27 OS=Morus notabilis GN=L484_017735 PE=3 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 2.0e-61
Identity = 123/135 (91.11%), Postives = 130/135 (96.30%), Query Frame = 1


Query: 1   MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60
           MVKFLK NKAVIVLQGRYAGRKAVI+R FD+GTRDRAYGHCLVAGIKKYP+KVIRKDS+K
Sbjct: 1   MVKFLKPNKAVIVLQGRYAGRKAVILRTFDEGTRDRAYGHCLVAGIKKYPSKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVKAF+KLVNY+HLMPTRYTLDVDLKDVVT D+LQSKDKKVTA KETKKR EER
Sbjct: 61  KTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDVVTTDALQSKDKKVTALKETKKRLEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of CmoCh04G006620 vs. TrEMBL
Match: A0A0D2PJQ1_GOSRA (60S ribosomal protein L27 OS=Gossypium raimondii GN=B456_001G213400 PE=3 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 5.9e-61
Identity = 121/135 (89.63%), Postives = 130/135 (96.30%), Query Frame = 1


Query: 1   MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60
           MVKFLK NKAVIVLQGRYAGRKAVI+R+FDDGTRDRAYGHCLVAGIKKYP+KVIRKDS+K
Sbjct: 1   MVKFLKPNKAVIVLQGRYAGRKAVIVRSFDDGTRDRAYGHCLVAGIKKYPSKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVK FIKLVNY+HLMPTRYTLDVDLKDVVT+D+LQ+KDKKV A K TK+RFEER
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKDVVTVDALQTKDKKVAACKATKERFEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of CmoCh04G006620 vs. TrEMBL
Match: I3NMK9_HEVBR (60S ribosomal protein L27 OS=Hevea brasiliensis GN=RPL27C PE=2 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 1.0e-60
Identity = 120/135 (88.89%), Postives = 131/135 (97.04%), Query Frame = 1


Query: 1   MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60
           MVKFLK NKAVI+LQGRYAGRKAVI+++FDDGTRDRAYGHCLVAGIKKYP+KVI+KDS+K
Sbjct: 1   MVKFLKPNKAVIILQGRYAGRKAVIVKSFDDGTRDRAYGHCLVAGIKKYPSKVIKKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVK FIKLVNY+HLMPTRYTLDVDLKDVVT+D+LQSK+KKV AAKETK RFEER
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKDVVTVDALQSKEKKVGAAKETKARFEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of CmoCh04G006620 vs. TAIR10
Match: AT3G22230.1 (AT3G22230.1 Ribosomal L27e protein family)

HSP 1 Score: 229.6 bits (584), Expect = 1.2e-60
Identity = 114/135 (84.44%), Postives = 127/135 (94.07%), Query Frame = 1


Query: 1   MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60
           MVKFLKQNKAVI+LQGRYAG+KAVII++FDDGT DR YGHCLVAG+KKYP+KVIRKDS+K
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGTSDRRYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVK FIKLVNY+HLMPTRYTLDVDLK+V T+D+L+SKDKKVTA KE K + EER
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALKSKDKKVTALKEAKAKLEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of CmoCh04G006620 vs. TAIR10
Match: AT4G15000.1 (AT4G15000.1 Ribosomal L27e protein family)

HSP 1 Score: 229.6 bits (584), Expect = 1.2e-60
Identity = 114/135 (84.44%), Postives = 126/135 (93.33%), Query Frame = 1


Query: 1   MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60
           MVKFLKQNKAVI+LQGRYAG+KAVII++FDDG RDR YGHCLVAG+KKYP+KVIRKDS+K
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGNRDRPYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVK FIKLVNY+HLMPTRYTLDVDLK+V T+D+LQSKDKKV A KE K + EER
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALQSKDKKVAALKEAKAKLEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of CmoCh04G006620 vs. TAIR10
Match: AT2G32220.1 (AT2G32220.1 Ribosomal L27e protein family)

HSP 1 Score: 209.9 bits (533), Expect = 9.6e-55
Identity = 101/135 (74.81%), Postives = 122/135 (90.37%), Query Frame = 1


Query: 1   MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60
           MVK +K  KAVI+LQGRY G+KAVI+++FDDGT ++ YGHCLVAG+KKYP+KVIRKDS+K
Sbjct: 1   MVKCMKPGKAVILLQGRYTGKKAVIVKSFDDGTVEKKYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVK F K++NY+H+MPTRYTLD+DLK+VV+ D++ SKDKKVTA KE K +FEER
Sbjct: 61  KTAKKSRVKCFFKVINYQHVMPTRYTLDLDLKNVVSADAISSKDKKVTALKEAKAKFEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of CmoCh04G006620 vs. NCBI nr
Match: gi|449460012|ref|XP_004147740.1| (PREDICTED: 60S ribosomal protein L27-like [Cucumis sativus])

HSP 1 Score: 256.9 bits (655), Expect = 1.9e-65
Identity = 132/135 (97.78%), Postives = 134/135 (99.26%), Query Frame = 1


Query: 1   MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60
           MVKFLK NKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDS+K
Sbjct: 1   MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVT+DSLQSKDKKVTAAKETKKRFEER
Sbjct: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of CmoCh04G006620 vs. NCBI nr
Match: gi|449460010|ref|XP_004147739.1| (PREDICTED: 60S ribosomal protein L27 [Cucumis sativus])

HSP 1 Score: 256.5 bits (654), Expect = 2.5e-65
Identity = 131/135 (97.04%), Postives = 134/135 (99.26%), Query Frame = 1


Query: 1   MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60
           MVKFLK NKAVIVLQGRYAGRKAVI+RAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDS+K
Sbjct: 1   MVKFLKPNKAVIVLQGRYAGRKAVIVRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVKAF+KLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER
Sbjct: 61  KTAKKSRVKAFVKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of CmoCh04G006620 vs. NCBI nr
Match: gi|659101899|ref|XP_008451849.1| (PREDICTED: 60S ribosomal protein L27-like [Cucumis melo])

HSP 1 Score: 255.8 bits (652), Expect = 4.3e-65
Identity = 132/135 (97.78%), Postives = 134/135 (99.26%), Query Frame = 1


Query: 1   MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60
           MVKFLK NKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDS+K
Sbjct: 1   MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKV+AAKETKKRFEER
Sbjct: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVSAAKETKKRFEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of CmoCh04G006620 vs. NCBI nr
Match: gi|659101908|ref|XP_008451854.1| (PREDICTED: 60S ribosomal protein L27 [Cucumis melo])

HSP 1 Score: 255.0 bits (650), Expect = 7.4e-65
Identity = 130/135 (96.30%), Postives = 134/135 (99.26%), Query Frame = 1


Query: 1   MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60
           MVKFLK NKAVIVLQGRYAGRKAVI+RAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDS+K
Sbjct: 1   MVKFLKPNKAVIVLQGRYAGRKAVIVRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVKAF+KLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKV+AAKETKKRFEER
Sbjct: 61  KTAKKSRVKAFVKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVSAAKETKKRFEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of CmoCh04G006620 vs. NCBI nr
Match: gi|1009127812|ref|XP_015880894.1| (PREDICTED: 60S ribosomal protein L27-3 [Ziziphus jujuba])

HSP 1 Score: 243.8 bits (621), Expect = 1.7e-61
Identity = 121/135 (89.63%), Postives = 132/135 (97.78%), Query Frame = 1


Query: 1   MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60
           MVKFLKQNKAVIVLQGRYAGRKAVI+R+FDDGTRDR YGHCLVAGI KYP+KVIRKDS+K
Sbjct: 1   MVKFLKQNKAVIVLQGRYAGRKAVILRSFDDGTRDRPYGHCLVAGINKYPSKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVKAF+KLVNY+H+MPTRYTLDVDLKDVV++D+LQSKDKKVTA KETKKRFE+R
Sbjct: 61  KTAKKSRVKAFVKLVNYKHIMPTRYTLDVDLKDVVSLDALQSKDKKVTALKETKKRFEDR 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

The following BLAST results are available for this feature:

BLAST of CmoCh04G006620 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL273_ARATH	2.1e-59	84.44	60S ribosomal protein L27-3 OS=Arabidopsis thaliana GN=RPL27C PE=2 SV=2	[more]
RL272_ARATH	2.1e-59	84.44	60S ribosomal protein L27-2 OS=Arabidopsis thaliana GN=RPL27B PE=2 SV=2	[more]
RL27_PEA	1.8e-58	83.70	60S ribosomal protein L27 OS=Pisum sativum GN=RPL27 PE=2 SV=1	[more]
RL271_ARATH	1.7e-53	74.81	60S ribosomal protein L27-1 OS=Arabidopsis thaliana GN=RPL27A PE=2 SV=1	[more]
RL27_SOLTU	5.5e-52	77.70	60S ribosomal protein L27 OS=Solanum tuberosum GN=RPL27 PE=2 SV=1	[more]

BLAST of CmoCh04G006620 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KVB4_CUCSA	1.4e-65	97.78	60S ribosomal protein L27 OS=Cucumis sativus GN=Csa_4G062360 PE=3 SV=1	[more]
A0A0A0KXF9_CUCSA	1.8e-65	97.04	60S ribosomal protein L27 OS=Cucumis sativus GN=Csa_4G061860 PE=3 SV=1	[more]
W9SC93_9ROSA	2.0e-61	91.11	60S ribosomal protein L27 OS=Morus notabilis GN=L484_017735 PE=3 SV=1	[more]
A0A0D2PJQ1_GOSRA	5.9e-61	89.63	60S ribosomal protein L27 OS=Gossypium raimondii GN=B456_001G213400 PE=3 SV=1	[more]
I3NMK9_HEVBR	1.0e-60	88.89	60S ribosomal protein L27 OS=Hevea brasiliensis GN=RPL27C PE=2 SV=1	[more]

BLAST of CmoCh04G006620 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G22230.1	1.2e-60	84.44	Ribosomal L27e protein family	[more]
AT4G15000.1	1.2e-60	84.44	Ribosomal L27e protein family	[more]
AT2G32220.1	9.6e-55	74.81	Ribosomal L27e protein family	[more]

BLAST of CmoCh04G006620 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449460012\|ref\|XP_004147740.1\|	1.9e-65	97.78	PREDICTED: 60S ribosomal protein L27-like [Cucumis sativus]	[more]
gi\|449460010\|ref\|XP_004147739.1\|	2.5e-65	97.04	PREDICTED: 60S ribosomal protein L27 [Cucumis sativus]	[more]
gi\|659101899\|ref\|XP_008451849.1\|	4.3e-65	97.78	PREDICTED: 60S ribosomal protein L27-like [Cucumis melo]	[more]
gi\|659101908\|ref\|XP_008451854.1\|	7.4e-65	96.30	PREDICTED: 60S ribosomal protein L27 [Cucumis melo]	[more]
gi\|1009127812\|ref\|XP_015880894.1\|	1.7e-61	89.63	PREDICTED: 60S ribosomal protein L27-3 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001141	Ribosomal_L27e
IPR008991	Translation_prot_SH3-like_sf
IPR014722	Rib_L2_dom2
IPR018262	Ribosomal_L27e_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0001510	RNA methylation
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G006620.1	CmoCh04G006620.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001141	Ribosomal protein L27e	PRODOM	PD009396		coord: 60..135 score: 3.0
IPR001141	Ribosomal protein L27e	PANTHER	PTHR10497	60S RIBOSOMAL PROTEIN L27	coord: 2..135 score: 1.8
IPR001141	Ribosomal protein L27e	PFAM	PF01777	Ribosomal_L27e	coord: 52..135 score: 7.1
IPR008991	Translation protein SH3-like domain	unknown	SSF50104	Translation proteins SH3-like domain	coord: 3..135 score: 5.72
IPR014722	Ribosomal protein L2 domain 2	GENE3D	G3DSA:2.30.30.30		coord: 3..117 score: 7.0
IPR018262	Ribosomal protein L27e, conserved site	PROSITE	PS01107	RIBOSOMAL_L27E	coord: 124..135 scor
None	No IPR available	unknown	Coil	Coil	coord: 100..120 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G006620	Cucsa.179990	Cucumber (Gy14) v1	cgycmoB0512
CmoCh04G006620	CmaCh16G004850	Cucurbita maxima (Rimu)	cmacmoB340
CmoCh04G006620	CmaCh04G006160	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G006620	Cla005436	Watermelon (97103) v1	cmowmB686
CmoCh04G006620	Csa4G061860	Cucumber (Chinese Long) v2	cmocuB699
CmoCh04G006620	MELO3C016198	Melon (DHL92) v3.5.1	cmomeB693
CmoCh04G006620	ClCG07G010880	Watermelon (Charleston Gray)	cmowcgB677
CmoCh04G006620	CSPI04G07180	Wild cucumber (PI 183967)	cmocpiB707
CmoCh04G006620	Lsi07G008010	Bottle gourd (USVL1VR-Ls)	cmolsiB689
CmoCh04G006620	MELO3C016199.2	Melon (DHL92) v3.6.1	cmomedB787
CmoCh04G006620	CsaV3_4G007410	Cucumber (Chinese Long) v3	cmocucB0827
CmoCh04G006620	Cla97C07G137620	Watermelon (97103) v2	cmowmbB756
CmoCh04G006620	Bhi01G002384	Wax gourd	cmowgoB0844
CmoCh04G006620	CsGy4G007090	Cucumber (Gy14) v2	cgybcmoB515

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh04G006620	CmoCh16G005260	Cucurbita moschata (Rifu)	cmocmoB288

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G006620	Cucurbita pepo (Zucchini)	cmocpeB670
CmoCh04G006620	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G006620	Silver-seed gourd	carcmoB0058
CmoCh04G006620	Silver-seed gourd	carcmoB0902