Cucsa.179990 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.179990
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	60S ribosomal protein L27
Location	scaffold01233 : 348685 .. 350345 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGTCGGAATAGGAAGAAAATCGGAGGGAGACGGACGGCGAGAAGGAGAGGGCGCAAAACTGAGACTGAGAAGAGGAAGAGACGAAGGGGTTTACAAAACTGAGAAGGGTTCGTAAAGAATTTAAAAACGATAGGAAACTTTTTGTAATTTGGCTGACTAGAAGTAGTACCTTGTAATTATCTAGTCACTCAAGGATGTGTCTTTCCCATGTCAGCAGTTATCAATAACGCATTCAATTTTATATTTGATTAAACTTCAAAATTAGGTTAATCTTAAGCCTCTATTTCTAACCTCCAATTTTTTAAATTAAAAATTTTGCTACCCAAAATGCTCATATTTCGCTATTCATATTTAAATTTTGTTCAACTTTGATGTATCATCATATACATTTACTATGTAATTACAATTACTTTATTTTGTTTCTTTTATTTACCATTCAGAGTTATATTAGTTAGTTCGATCAGAAGAAAATTGTGTTTAAACTATCTATTTTAGTTCTCCCCCACAAAGTTCACATTTCTTTTAACTAAACCAAATAAAATGCACACATTATAGACTTATTTATGGTCTCTTTTATTGATTTTAAAATTTTCCTAATAATAATCTTTTTGAGACGGAGTGTAAGCCCATGGGCCCATAAAAGAGACATTGAGTAAGGCTCGGCCCAAATAAAAACATTGGGTGTACAATCAACTGCCCTCCATTCGTTCTATTTCTCTTCGTCTCCGTCGTCGTTCAAGCCTCGGATTAGGGTTTAGCTTCACCCTATAAGACATGGACGTCACCAAGAAGCGGAGGATGGACGAAAACGGTGTAAGCTATTGATTAAAAGATACAGTGCCGTCGGCCCAGTTGATTAACAAAAGCCCATTTAAATTATGGCCCAAATTGACTTGAAAAGCCCTAAAACCCTATTTTTAGGGAAAACCTAAATCAACGTTTCAACTGTTGGAGGCTTGGAGGCTTGGAGGCAGAGAGCAAGGAGACGGAAAACACAGACCAGAGGTGGAAGTTCGGAAATGGTGAAGTTCCTCAAGCCTAACAAAGCCGTCATCGTCCTCCAAGGCCGTTACGCCGGCCGGAAGGCGGTCATCATTCGCGCCTTCGACGATGGAACTCGGGATCGCGCTTATGGCCACTGCTTAGTCGCTGGAATCAAGAAGTACCCGGCCAAGGTTATCCGCAAGGACTCCGCCAAGAAGACCGCTAAAAAATCCCGTGTCAAGGCCTTCATTAAGCTCGTTAATTATAGGCATCTGATGCCCACTAGGTACACTCTCGATGTCGATCTTAAAGATGTTGTCACTGTCGATTCGTTGCAGTCAAAGGACAAAAAGGTCACCGCCGCCAAAGAGACCAAGAAGAGGTTCGAGGAAAGGTTCAAAACCGGGAAGAACAGGTGGTTTTTCACTAAGCTCAGATTCTGAAGTAGCTCATTCAGTTACTGGTTTCTTCTGGATTACTCTCGTATTAGGTTATTGAGCAATTTGATTTTTTGTTTTCGAGTTATCGTACGTTCTATCTTACTAATGTAGTTTGTTTTGGTGTTTAATTTTTGTCTGGACGTACTTTGAATGCTTGGATGAGAAATCTCTATGGTTATAATGATACATTTGAGACTTGCATTTATATAGATTCATATATTTTTCTGATATT

mRNA sequence

ATGGCCGTCGGAATAGGAAGAAAATCGGAGGGAGACGGACGGCGAGAAGGAGAGGGCGCAAAACTGAGACTGAGAAGAGGAAGAGACGAAGGGGTTTACAAAACTGAGAAGGGCTTGGAGGCTTGGAGGCAGAGAGCAAGGAGACGGAAAACACAGACCAGAGGTGGAAGTTCGGAAATGGTGAAGTTCCTCAAGCCTAACAAAGCCGTCATCGTCCTCCAAGGCCGTTACGCCGGCCGGAAGGCGGTCATCATTCGCGCCTTCGACGATGGAACTCGGGATCGCGCTTATGGCCACTGCTTAGTCGCTGGAATCAAGAAGTACCCGGCCAAGGTTATCCGCAAGGACTCCGCCAAGAAGACCGCTAAAAAATCCCGTGTCAAGGCCTTCATTAAGCTCGTTAATTATAGGCATCTGATGCCCACTAGGTACACTCTCGATGTCGATCTTAAAGATGTTGTCACTGTCGATTCGTTGCAGTCAAAGGACAAAAAGGTCACCGCCGCCAAAGAGACCAAGAAGAGGTTCGAGGAAAGGTTCAAAACCGGGAAGAACAGGTGGTTTTTCACTAAGCTCAGATTCTGAAGTAGCTCATTCAGTTACTGGTTTCTTCTGGATTACTCTCGTATTAGGTTATTGAGCAATTTGATTTTTTGTTTTCGAGTTATCGTACGTTCTATCTTACTAATGTAGTTTGTTTTGGTGTTTAATTTTTGTCTGGACGTACTTTGAATGCTTGGATGAGAAATCTCTATGGTTATAATGATACATTTGAGACTTGCATTTATATAGATTCATATATTTTTCTGATATT

Coding sequence (CDS)

ATGGCCGTCGGAATAGGAAGAAAATCGGAGGGAGACGGACGGCGAGAAGGAGAGGGCGCAAAACTGAGACTGAGAAGAGGAAGAGACGAAGGGGTTTACAAAACTGAGAAGGGCTTGGAGGCTTGGAGGCAGAGAGCAAGGAGACGGAAAACACAGACCAGAGGTGGAAGTTCGGAAATGGTGAAGTTCCTCAAGCCTAACAAAGCCGTCATCGTCCTCCAAGGCCGTTACGCCGGCCGGAAGGCGGTCATCATTCGCGCCTTCGACGATGGAACTCGGGATCGCGCTTATGGCCACTGCTTAGTCGCTGGAATCAAGAAGTACCCGGCCAAGGTTATCCGCAAGGACTCCGCCAAGAAGACCGCTAAAAAATCCCGTGTCAAGGCCTTCATTAAGCTCGTTAATTATAGGCATCTGATGCCCACTAGGTACACTCTCGATGTCGATCTTAAAGATGTTGTCACTGTCGATTCGTTGCAGTCAAAGGACAAAAAGGTCACCGCCGCCAAAGAGACCAAGAAGAGGTTCGAGGAAAGGTTCAAAACCGGGAAGAACAGGTGGTTTTTCACTAAGCTCAGATTCTGA

Protein sequence

MAVGIGRKSEGDGRREGEGAKLRLRRGRDEGVYKTEKGLEAWRQRARRRKTQTRGGSSEMVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF*

Homology

[Close]

BLAST of Cucsa.179990 vs. Swiss-Prot
Match: RL27_PEA (60S ribosomal protein L27 OS=Pisum sativum GN=RPL27 PE=2 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 2.9e-62
Identity = 115/135 (85.19%), Postives = 126/135 (93.33%), Query Frame = 1


Query: 60  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 119
           MVKFLKPNKAVI+LQGRYAG+KAVI++ FDDGTR++ YGHCLVAGIKK+P+KVI+KDSAK
Sbjct: 1   MVKFLKPNKAVILLQGRYAGKKAVIVKTFDDGTREKPYGHCLVAGIKKFPSKVIKKDSAK 60

Query: 120 KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEER 179
           KTAKKSRVKAF+KLVNY+HLMPTRYTLDVDLKD V  D LQSKDKKVTA KETKK  EER
Sbjct: 61  KTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDAVVPDVLQSKDKKVTALKETKKSLEER 120

Query: 180 FKTGKNRWFFTKLRF 195
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of Cucsa.179990 vs. Swiss-Prot
Match: RL272_ARATH (60S ribosomal protein L27-2 OS=Arabidopsis thaliana GN=RPL27B PE=2 SV=2)

HSP 1 Score: 236.5 bits (602), Expect = 2.5e-61
Identity = 114/135 (84.44%), Postives = 126/135 (93.33%), Query Frame = 1


Query: 60  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 119
           MVKFLK NKAVI+LQGRYAG+KAVII++FDDGT DR YGHCLVAG+KKYP+KVIRKDSAK
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGTSDRRYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 120 KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEER 179
           KTAKKSRVK FIKLVNY+HLMPTRYTLDVDLK+V T+D+L+SKDKKVTA KE K + EER
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALKSKDKKVTALKEAKAKLEER 120

Query: 180 FKTGKNRWFFTKLRF 195
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of Cucsa.179990 vs. Swiss-Prot
Match: RL273_ARATH (60S ribosomal protein L27-3 OS=Arabidopsis thaliana GN=RPL27C PE=2 SV=2)

HSP 1 Score: 236.5 bits (602), Expect = 2.5e-61
Identity = 114/135 (84.44%), Postives = 125/135 (92.59%), Query Frame = 1


Query: 60  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 119
           MVKFLK NKAVI+LQGRYAG+KAVII++FDDG RDR YGHCLVAG+KKYP+KVIRKDSAK
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGNRDRPYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 120 KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEER 179
           KTAKKSRVK FIKLVNY+HLMPTRYTLDVDLK+V T+D+LQSKDKKV A KE K + EER
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALQSKDKKVAALKEAKAKLEER 120

Query: 180 FKTGKNRWFFTKLRF 195
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of Cucsa.179990 vs. Swiss-Prot
Match: RL271_ARATH (60S ribosomal protein L27-1 OS=Arabidopsis thaliana GN=RPL27A PE=2 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 2.8e-57
Identity = 103/135 (76.30%), Postives = 123/135 (91.11%), Query Frame = 1


Query: 60  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 119
           MVK +KP KAVI+LQGRY G+KAVI+++FDDGT ++ YGHCLVAG+KKYP+KVIRKDSAK
Sbjct: 1   MVKCMKPGKAVILLQGRYTGKKAVIVKSFDDGTVEKKYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 120 KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEER 179
           KTAKKSRVK F K++NY+H+MPTRYTLD+DLK+VV+ D++ SKDKKVTA KE K +FEER
Sbjct: 61  KTAKKSRVKCFFKVINYQHVMPTRYTLDLDLKNVVSADAISSKDKKVTALKEAKAKFEER 120

Query: 180 FKTGKNRWFFTKLRF 195
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of Cucsa.179990 vs. Swiss-Prot
Match: RL27_SOLTU (60S ribosomal protein L27 OS=Solanum tuberosum GN=RPL27 PE=2 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 9.1e-56
Identity = 110/139 (79.14%), Postives = 119/139 (85.61%), Query Frame = 1


Query: 60  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 119
           M KFLKPNKAVI+LQG+YAGRKAVI+RAFD+GTRDR YGHCLVAGI +YP KVIRKDSAK
Sbjct: 1   MEKFLKPNKAVILLQGKYAGRKAVIVRAFDEGTRDRPYGHCLVAGISRYPKKVIRKDSAK 60

Query: 120 KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDL----KDVVTVDSLQSKDKKVTAAKETKKR 179
           K  KKSRVKAFIKLVNY H+MPTRYTLD DL    KDVV  D LQ++DKKVT A+ TK R
Sbjct: 61  KAGKKSRVKAFIKLVNYNHIMPTRYTLDEDLKDVVKDVVNADVLQARDKKVT-ARRTKAR 120

Query: 180 FEERFKTGKNRWFFTKLRF 195
             ERFKTGKNRWFFTKLRF
Sbjct: 121 LAERFKTGKNRWFFTKLRF 138

[Close]

BLAST of Cucsa.179990 vs. TrEMBL
Match: A0A0A0KVB4_CUCSA (60S ribosomal protein L27 OS=Cucumis sativus GN=Csa_4G062360 PE=3 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 2.2e-69
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 1


Query: 60  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 119
           MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK
Sbjct: 1   MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60

Query: 120 KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEER 179
           KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEER
Sbjct: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEER 120

Query: 180 FKTGKNRWFFTKLRF 195
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of Cucsa.179990 vs. TrEMBL
Match: A0A0A0KXF9_CUCSA (60S ribosomal protein L27 OS=Cucumis sativus GN=Csa_4G061860 PE=3 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 5.0e-69
Identity = 132/135 (97.78%), Postives = 135/135 (100.00%), Query Frame = 1


Query: 60  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 119
           MVKFLKPNKAVIVLQGRYAGRKAVI+RAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK
Sbjct: 1   MVKFLKPNKAVIVLQGRYAGRKAVIVRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60

Query: 120 KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEER 179
           KTAKKSRVKAF+KLVNYRHLMPTRYTLDVDLKDVVT+DSLQSKDKKVTAAKETKKRFEER
Sbjct: 61  KTAKKSRVKAFVKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER 120

Query: 180 FKTGKNRWFFTKLRF 195
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of Cucsa.179990 vs. TrEMBL
Match: W9SC93_9ROSA (60S ribosomal protein L27 OS=Morus notabilis GN=L484_017735 PE=3 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 3.3e-65
Identity = 125/135 (92.59%), Postives = 131/135 (97.04%), Query Frame = 1


Query: 60  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 119
           MVKFLKPNKAVIVLQGRYAGRKAVI+R FD+GTRDRAYGHCLVAGIKKYP+KVIRKDSAK
Sbjct: 1   MVKFLKPNKAVIVLQGRYAGRKAVILRTFDEGTRDRAYGHCLVAGIKKYPSKVIRKDSAK 60

Query: 120 KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEER 179
           KTAKKSRVKAF+KLVNY+HLMPTRYTLDVDLKDVVT D+LQSKDKKVTA KETKKR EER
Sbjct: 61  KTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDVVTTDALQSKDKKVTALKETKKRLEER 120

Query: 180 FKTGKNRWFFTKLRF 195
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of Cucsa.179990 vs. TrEMBL
Match: A0A0D2PJQ1_GOSRA (60S ribosomal protein L27 OS=Gossypium raimondii GN=B456_001G213400 PE=3 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 9.7e-65
Identity = 124/135 (91.85%), Postives = 131/135 (97.04%), Query Frame = 1


Query: 60  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 119
           MVKFLKPNKAVIVLQGRYAGRKAVI+R+FDDGTRDRAYGHCLVAGIKKYP+KVIRKDSAK
Sbjct: 1   MVKFLKPNKAVIVLQGRYAGRKAVIVRSFDDGTRDRAYGHCLVAGIKKYPSKVIRKDSAK 60

Query: 120 KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEER 179
           KTAKKSRVK FIKLVNY+HLMPTRYTLDVDLKDVVTVD+LQ+KDKKV A K TK+RFEER
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKDVVTVDALQTKDKKVAACKATKERFEER 120

Query: 180 FKTGKNRWFFTKLRF 195
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of Cucsa.179990 vs. TrEMBL
Match: I3NMK9_HEVBR (60S ribosomal protein L27 OS=Hevea brasiliensis GN=RPL27C PE=2 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 1.7e-64
Identity = 123/135 (91.11%), Postives = 132/135 (97.78%), Query Frame = 1


Query: 60  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 119
           MVKFLKPNKAVI+LQGRYAGRKAVI+++FDDGTRDRAYGHCLVAGIKKYP+KVI+KDSAK
Sbjct: 1   MVKFLKPNKAVIILQGRYAGRKAVIVKSFDDGTRDRAYGHCLVAGIKKYPSKVIKKDSAK 60

Query: 120 KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEER 179
           KTAKKSRVK FIKLVNY+HLMPTRYTLDVDLKDVVTVD+LQSK+KKV AAKETK RFEER
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKDVVTVDALQSKEKKVGAAKETKARFEER 120

Query: 180 FKTGKNRWFFTKLRF 195
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of Cucsa.179990 vs. TAIR10
Match: AT3G22230.1 (AT3G22230.1 Ribosomal L27e protein family)

HSP 1 Score: 236.5 bits (602), Expect = 1.4e-62
Identity = 114/135 (84.44%), Postives = 126/135 (93.33%), Query Frame = 1


Query: 60  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 119
           MVKFLK NKAVI+LQGRYAG+KAVII++FDDGT DR YGHCLVAG+KKYP+KVIRKDSAK
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGTSDRRYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 120 KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEER 179
           KTAKKSRVK FIKLVNY+HLMPTRYTLDVDLK+V T+D+L+SKDKKVTA KE K + EER
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALKSKDKKVTALKEAKAKLEER 120

Query: 180 FKTGKNRWFFTKLRF 195
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of Cucsa.179990 vs. TAIR10
Match: AT4G15000.1 (AT4G15000.1 Ribosomal L27e protein family)

HSP 1 Score: 236.5 bits (602), Expect = 1.4e-62
Identity = 114/135 (84.44%), Postives = 125/135 (92.59%), Query Frame = 1


Query: 60  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 119
           MVKFLK NKAVI+LQGRYAG+KAVII++FDDG RDR YGHCLVAG+KKYP+KVIRKDSAK
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGNRDRPYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 120 KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEER 179
           KTAKKSRVK FIKLVNY+HLMPTRYTLDVDLK+V T+D+LQSKDKKV A KE K + EER
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALQSKDKKVAALKEAKAKLEER 120

Query: 180 FKTGKNRWFFTKLRF 195
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of Cucsa.179990 vs. TAIR10
Match: AT2G32220.1 (AT2G32220.1 Ribosomal L27e protein family)

HSP 1 Score: 223.0 bits (567), Expect = 1.6e-58
Identity = 103/135 (76.30%), Postives = 123/135 (91.11%), Query Frame = 1


Query: 60  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 119
           MVK +KP KAVI+LQGRY G+KAVI+++FDDGT ++ YGHCLVAG+KKYP+KVIRKDSAK
Sbjct: 1   MVKCMKPGKAVILLQGRYTGKKAVIVKSFDDGTVEKKYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 120 KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEER 179
           KTAKKSRVK F K++NY+H+MPTRYTLD+DLK+VV+ D++ SKDKKVTA KE K +FEER
Sbjct: 61  KTAKKSRVKCFFKVINYQHVMPTRYTLDLDLKNVVSADAISSKDKKVTALKEAKAKFEER 120

Query: 180 FKTGKNRWFFTKLRF 195
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of Cucsa.179990 vs. NCBI nr
Match: gi|449460012|ref|XP_004147740.1| (PREDICTED: 60S ribosomal protein L27-like [Cucumis sativus])

HSP 1 Score: 270.0 bits (689), Expect = 3.2e-69
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 1


Query: 60  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 119
           MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK
Sbjct: 1   MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60

Query: 120 KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEER 179
           KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEER
Sbjct: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEER 120

Query: 180 FKTGKNRWFFTKLRF 195
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of Cucsa.179990 vs. NCBI nr
Match: gi|449460010|ref|XP_004147739.1| (PREDICTED: 60S ribosomal protein L27 [Cucumis sativus])

HSP 1 Score: 268.9 bits (686), Expect = 7.2e-69
Identity = 132/135 (97.78%), Postives = 135/135 (100.00%), Query Frame = 1


Query: 60  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 119
           MVKFLKPNKAVIVLQGRYAGRKAVI+RAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK
Sbjct: 1   MVKFLKPNKAVIVLQGRYAGRKAVIVRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60

Query: 120 KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEER 179
           KTAKKSRVKAF+KLVNYRHLMPTRYTLDVDLKDVVT+DSLQSKDKKVTAAKETKKRFEER
Sbjct: 61  KTAKKSRVKAFVKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER 120

Query: 180 FKTGKNRWFFTKLRF 195
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of Cucsa.179990 vs. NCBI nr
Match: gi|659101899|ref|XP_008451849.1| (PREDICTED: 60S ribosomal protein L27-like [Cucumis melo])

HSP 1 Score: 268.1 bits (684), Expect = 1.2e-68
Identity = 133/135 (98.52%), Postives = 135/135 (100.00%), Query Frame = 1


Query: 60  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 119
           MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK
Sbjct: 1   MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60

Query: 120 KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEER 179
           KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVT+DSLQSKDKKV+AAKETKKRFEER
Sbjct: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVSAAKETKKRFEER 120

Query: 180 FKTGKNRWFFTKLRF 195
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of Cucsa.179990 vs. NCBI nr
Match: gi|659101908|ref|XP_008451854.1| (PREDICTED: 60S ribosomal protein L27 [Cucumis melo])

HSP 1 Score: 267.3 bits (682), Expect = 2.1e-68
Identity = 131/135 (97.04%), Postives = 135/135 (100.00%), Query Frame = 1


Query: 60  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 119
           MVKFLKPNKAVIVLQGRYAGRKAVI+RAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK
Sbjct: 1   MVKFLKPNKAVIVLQGRYAGRKAVIVRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60

Query: 120 KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEER 179
           KTAKKSRVKAF+KLVNYRHLMPTRYTLDVDLKDVVT+DSLQSKDKKV+AAKETKKRFEER
Sbjct: 61  KTAKKSRVKAFVKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVSAAKETKKRFEER 120

Query: 180 FKTGKNRWFFTKLRF 195
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of Cucsa.179990 vs. NCBI nr
Match: gi|703161847|ref|XP_010112899.1| (60S ribosomal protein L27 [Morus notabilis])

HSP 1 Score: 256.1 bits (653), Expect = 4.8e-65
Identity = 125/135 (92.59%), Postives = 131/135 (97.04%), Query Frame = 1


Query: 60  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 119
           MVKFLKPNKAVIVLQGRYAGRKAVI+R FD+GTRDRAYGHCLVAGIKKYP+KVIRKDSAK
Sbjct: 1   MVKFLKPNKAVIVLQGRYAGRKAVILRTFDEGTRDRAYGHCLVAGIKKYPSKVIRKDSAK 60

Query: 120 KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEER 179
           KTAKKSRVKAF+KLVNY+HLMPTRYTLDVDLKDVVT D+LQSKDKKVTA KETKKR EER
Sbjct: 61  KTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDVVTTDALQSKDKKVTALKETKKRLEER 120

Query: 180 FKTGKNRWFFTKLRF 195
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

The following BLAST results are available for this feature:

BLAST of Cucsa.179990 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL27_PEA	2.9e-62	85.19	60S ribosomal protein L27 OS=Pisum sativum GN=RPL27 PE=2 SV=1	[more]
RL272_ARATH	2.5e-61	84.44	60S ribosomal protein L27-2 OS=Arabidopsis thaliana GN=RPL27B PE=2 SV=2	[more]
RL273_ARATH	2.5e-61	84.44	60S ribosomal protein L27-3 OS=Arabidopsis thaliana GN=RPL27C PE=2 SV=2	[more]
RL271_ARATH	2.8e-57	76.30	60S ribosomal protein L27-1 OS=Arabidopsis thaliana GN=RPL27A PE=2 SV=1	[more]
RL27_SOLTU	9.1e-56	79.14	60S ribosomal protein L27 OS=Solanum tuberosum GN=RPL27 PE=2 SV=1	[more]

BLAST of Cucsa.179990 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KVB4_CUCSA	2.2e-69	100.00	60S ribosomal protein L27 OS=Cucumis sativus GN=Csa_4G062360 PE=3 SV=1	[more]
A0A0A0KXF9_CUCSA	5.0e-69	97.78	60S ribosomal protein L27 OS=Cucumis sativus GN=Csa_4G061860 PE=3 SV=1	[more]
W9SC93_9ROSA	3.3e-65	92.59	60S ribosomal protein L27 OS=Morus notabilis GN=L484_017735 PE=3 SV=1	[more]
A0A0D2PJQ1_GOSRA	9.7e-65	91.85	60S ribosomal protein L27 OS=Gossypium raimondii GN=B456_001G213400 PE=3 SV=1	[more]
I3NMK9_HEVBR	1.7e-64	91.11	60S ribosomal protein L27 OS=Hevea brasiliensis GN=RPL27C PE=2 SV=1	[more]

BLAST of Cucsa.179990 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G22230.1	1.4e-62	84.44	Ribosomal L27e protein family	[more]
AT4G15000.1	1.4e-62	84.44	Ribosomal L27e protein family	[more]
AT2G32220.1	1.6e-58	76.30	Ribosomal L27e protein family	[more]

BLAST of Cucsa.179990 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449460012\|ref\|XP_004147740.1\|	3.2e-69	100.00	PREDICTED: 60S ribosomal protein L27-like [Cucumis sativus]	[more]
gi\|449460010\|ref\|XP_004147739.1\|	7.2e-69	97.78	PREDICTED: 60S ribosomal protein L27 [Cucumis sativus]	[more]
gi\|659101899\|ref\|XP_008451849.1\|	1.2e-68	98.52	PREDICTED: 60S ribosomal protein L27-like [Cucumis melo]	[more]
gi\|659101908\|ref\|XP_008451854.1\|	2.1e-68	97.04	PREDICTED: 60S ribosomal protein L27 [Cucumis melo]	[more]
gi\|703161847\|ref\|XP_010112899.1\|	4.8e-65	92.59	60S ribosomal protein L27 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001141	Ribosomal_L27e
IPR008991	Translation_prot_SH3-like_sf
IPR014722	Rib_L2_dom2
IPR018262	Ribosomal_L27e_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.179990.1	Cucsa.179990.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001141	Ribosomal protein L27e	PRODOM	PD009396		coord: 119..194 score: 3.0
IPR001141	Ribosomal protein L27e	PANTHER	PTHR10497	60S RIBOSOMAL PROTEIN L27	coord: 61..194 score: 4.9
IPR001141	Ribosomal protein L27e	PFAM	PF01777	Ribosomal_L27e	coord: 111..194 score: 1.1
IPR008991	Translation protein SH3-like domain	unknown	SSF50104	Translation proteins SH3-like domain	coord: 61..194 score: 3.31
IPR014722	Ribosomal protein L2 domain 2	GENE3D	G3DSA:2.30.30.30		coord: 62..176 score: 1.7
IPR018262	Ribosomal protein L27e, conserved site	PROSITE	PS01107	RIBOSOMAL_L27E	coord: 183..194 scor
None	No IPR available	unknown	Coil	Coil	coord: 159..179 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.179990	Cla005436	Watermelon (97103) v1	cgywmB343
Cucsa.179990	Csa4G061860	Cucumber (Chinese Long) v2	cgycuB275
Cucsa.179990	MELO3C016198	Melon (DHL92) v3.5.1	cgymeB323
Cucsa.179990	ClCG07G010880	Watermelon (Charleston Gray)	cgywcgB320
Cucsa.179990	CSPI04G07180	Wild cucumber (PI 183967)	cgycpiB285
Cucsa.179990	CmaCh16G004850	Cucurbita maxima (Rimu)	cgycmaB0511
Cucsa.179990	CmaCh04G006160	Cucurbita maxima (Rimu)	cgycmaB0512
Cucsa.179990	CmoCh04G006620	Cucurbita moschata (Rifu)	cgycmoB0512
Cucsa.179990	CmoCh16G005260	Cucurbita moschata (Rifu)	cgycmoB0511
Cucsa.179990	Lsi07G008010	Bottle gourd (USVL1VR-Ls)	cgylsiB301
Cucsa.179990	MELO3C016199.2	Melon (DHL92) v3.6.1	cgymedB318
Cucsa.179990	CsaV3_4G032310	Cucumber (Chinese Long) v3	cgycucB288
Cucsa.179990	CsaV3_4G007410	Cucumber (Chinese Long) v3	cgycucB289
Cucsa.179990	Cla97C07G137620	Watermelon (97103) v2	cgywmbB324
Cucsa.179990	Bhi01G002384	Wax gourd	cgywgoB369

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.179990	Silver-seed gourd	carcgyB0052
Cucsa.179990	Silver-seed gourd	carcgyB0732
Cucsa.179990	Cucurbita pepo (Zucchini)	cgycpeB0493
Cucsa.179990	Cucurbita pepo (Zucchini)	cgycpeB0494