CsaV3_4G032310 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G032310
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Description60S ribosomal protein L27
Locationchr4 : 22844414 .. 22844821 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAAGTTCATCAAACCGAACAAAGCTGTTGTCGTTCTTCAAGGCCGATTTGCTGGCCGGAAAGCTGTGATCGTCCGAAACTTCGATGAAGGAACCCGCGACCGCCCCTACGGCCATTGTTTGGTAGCAGGGATGAAAAAGTACCCGAGCAAGGTCGTTCGCAAAGATTCAAAGAAAAAGACAGACAAAAAATCGAGAGTGAAGGCATTCATCAAGCTTGTGAATTACCAGCACATTATGCCGACGAGGTACACGCTCGACGTTGATCTCAAGGATGTGGTTAATGTGGATTGCTTACAGTCCAAAGTGTCGAAGGTTGCGGCGTCGAAGGAGATCAAAAAGAGACTGGAGGACAGGTTTAAGACCGGAAAGAACAGGTGGTTTTTCACCAAGCTTAGGTTCTGA

mRNA sequence

ATGGTGAAGTTCATCAAACCGAACAAAGCTGTTGTCGTTCTTCAAGGCCGATTTGCTGGCCGGAAAGCTGTGATCGTCCGAAACTTCGATGAAGGAACCCGCGACCGCCCCTACGGCCATTGTTTGGTAGCAGGGATGAAAAAGTACCCGAGCAAGGTCGTTCGCAAAGATTCAAAGAAAAAGACAGACAAAAAATCGAGAGTGAAGGCATTCATCAAGCTTGTGAATTACCAGCACATTATGCCGACGAGGTACACGCTCGACGTTGATCTCAAGGATGTGGTTAATGTGGATTGCTTACAGTCCAAAGTGTCGAAGGTTGCGGCGTCGAAGGAGATCAAAAAGAGACTGGAGGACAGGTTTAAGACCGGAAAGAACAGGTGGTTTTTCACCAAGCTTAGGTTCTGA

Coding sequence (CDS)

ATGGTGAAGTTCATCAAACCGAACAAAGCTGTTGTCGTTCTTCAAGGCCGATTTGCTGGCCGGAAAGCTGTGATCGTCCGAAACTTCGATGAAGGAACCCGCGACCGCCCCTACGGCCATTGTTTGGTAGCAGGGATGAAAAAGTACCCGAGCAAGGTCGTTCGCAAAGATTCAAAGAAAAAGACAGACAAAAAATCGAGAGTGAAGGCATTCATCAAGCTTGTGAATTACCAGCACATTATGCCGACGAGGTACACGCTCGACGTTGATCTCAAGGATGTGGTTAATGTGGATTGCTTACAGTCCAAAGTGTCGAAGGTTGCGGCGTCGAAGGAGATCAAAAAGAGACTGGAGGACAGGTTTAAGACCGGAAAGAACAGGTGGTTTTTCACCAAGCTTAGGTTCTGA

Protein sequence

MVKFIKPNKAVVVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVVRKDSKKKTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDRFKTGKNRWFFTKLRF
Homology
[Close]
BLAST of CsaV3_4G032310 vs. NCBI nr
Match: XP_008464678.1 (PREDICTED: 60S ribosomal protein L27-3-like [Cucumis melo])

HSP 1 Score: 267.3 bits (682), Expect = 2.8e-68
Identity = 133/135 (98.52%), Postives = 135/135 (100.00%), Query Frame = 0 

Query: 1   MVKFIKPNKAVVVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVVRKDSKK 60
           MVKFIKPNKAV+VLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKV+RKDSKK
Sbjct: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60

Query: 61  KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120
           KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR
Sbjct: 61  KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]
BLAST of CsaV3_4G032310 vs. NCBI nr
Match: XP_004145994.2 (PREDICTED: 60S ribosomal protein L27-3-like [Cucumis sativus] >KGN54977.1 60S ribosomal protein L27 [Cucumis sativus])

HSP 1 Score: 265.8 bits (678), Expect = 8.2e-68
Identity = 134/135 (99.26%), Postives = 134/135 (99.26%), Query Frame = 0 

Query: 1   MVKFIKPNKAVVVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVVRKDSKK 60
           MVKFIKPNKAVVVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVVRKDSKK
Sbjct: 1   MVKFIKPNKAVVVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVVRKDSKK 60

Query: 61  KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120
           KTDKKSRVKAFIKL NYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR
Sbjct: 61  KTDKKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]
BLAST of CsaV3_4G032310 vs. NCBI nr
Match: XP_022940098.1 (60S ribosomal protein L27-3-like [Cucurbita moschata])

HSP 1 Score: 260.8 bits (665), Expect = 2.6e-66
Identity = 130/135 (96.30%), Postives = 133/135 (98.52%), Query Frame = 0 

Query: 1   MVKFIKPNKAVVVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVVRKDSKK 60
           MVKFIKPNKAV+VLQGRFAGRKAVIVRNFD+GTRDRPYGHCLVAGMKKYPSKV+RKDS K
Sbjct: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTK 60

Query: 61  KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120
           KT KKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR
Sbjct: 61  KTAKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]
BLAST of CsaV3_4G032310 vs. NCBI nr
Match: XP_011658974.1 (PREDICTED: 60S ribosomal protein L27-like [Cucumis sativus] >KGN44160.1 hypothetical protein Csa_7G209560 [Cucumis sativus])

HSP 1 Score: 260.0 bits (663), Expect = 4.5e-66
Identity = 129/135 (95.56%), Postives = 134/135 (99.26%), Query Frame = 0 

Query: 1   MVKFIKPNKAVVVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVVRKDSKK 60
           MVKFIKPNKAV+VLQGR+AGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVVRKDSKK
Sbjct: 1   MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVVRKDSKK 60

Query: 61  KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120
           KTDKKSRVKAFIKL NYQHIMPTRYTLDVDLKDVVNVDCLQS+VSKV+ASKEIKKRLE+R
Sbjct: 61  KTDKKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCLQSRVSKVSASKEIKKRLENR 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]
BLAST of CsaV3_4G032310 vs. NCBI nr
Match: XP_022981139.1 (60S ribosomal protein L27-like [Cucurbita maxima])

HSP 1 Score: 255.4 bits (651), Expect = 1.1e-64
Identity = 127/135 (94.07%), Postives = 131/135 (97.04%), Query Frame = 0 

Query: 1   MVKFIKPNKAVVVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVVRKDSKK 60
           MVKFIKPNKAV+VLQGRFAGRKAVIVRNFD+GTRDRPYGHCLVAGMKKYPSKV+RKDS K
Sbjct: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTK 60

Query: 61  KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120
           KT KKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVN DCLQSK SKVAA+KEIKKRLEDR
Sbjct: 61  KTAKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNADCLQSKGSKVAAAKEIKKRLEDR 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]
BLAST of CsaV3_4G032310 vs. TAIR10
Match: AT4G15000.1 (Ribosomal L27e protein family)

HSP 1 Score: 221.1 bits (562), Expect = 4.2e-58
Identity = 106/135 (78.52%), Postives = 122/135 (90.37%), Query Frame = 0 

Query: 1   MVKFIKPNKAVVVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVVRKDSKK 60
           MVKF+K NKAV++LQGR+AG+KAVI+++FD+G RDRPYGHCLVAG+KKYPSKV+RKDS K
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGNRDRPYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120
           KT KKSRVK FIKLVNYQH+MPTRYTLDVDLK+V  +D LQSK  KVAA KE K +LE+R
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALQSKDKKVAALKEAKAKLEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]
BLAST of CsaV3_4G032310 vs. TAIR10
Match: AT3G22230.1 (Ribosomal L27e protein family)

HSP 1 Score: 214.2 bits (544), Expect = 5.1e-56
Identity = 103/135 (76.30%), Postives = 120/135 (88.89%), Query Frame = 0 

Query: 1   MVKFIKPNKAVVVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVVRKDSKK 60
           MVKF+K NKAV++LQGR+AG+KAVI+++FD+GT DR YGHCLVAG+KKYPSKV+RKDS K
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGTSDRRYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120
           KT KKSRVK FIKLVNYQH+MPTRYTLDVDLK+V  +D L+SK  KV A KE K +LE+R
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALKSKDKKVTALKEAKAKLEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]
BLAST of CsaV3_4G032310 vs. TAIR10
Match: AT2G32220.1 (Ribosomal L27e protein family)

HSP 1 Score: 201.8 bits (512), Expect = 2.6e-52
Identity = 95/135 (70.37%), Postives = 116/135 (85.93%), Query Frame = 0 

Query: 1   MVKFIKPNKAVVVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVVRKDSKK 60
           MVK +KP KAV++LQGR+ G+KAVIV++FD+GT ++ YGHCLVAG+KKYPSKV+RKDS K
Sbjct: 1   MVKCMKPGKAVILLQGRYTGKKAVIVKSFDDGTVEKKYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120
           KT KKSRVK F K++NYQH+MPTRYTLD+DLK+VV+ D + SK  KV A KE K + E+R
Sbjct: 61  KTAKKSRVKCFFKVINYQHVMPTRYTLDLDLKNVVSADAISSKDKKVTALKEAKAKFEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]
BLAST of CsaV3_4G032310 vs. Swiss-Prot
Match: sp|P51419|RL273_ARATH (60S ribosomal protein L27-3 OS=Arabidopsis thaliana OX=3702 GN=RPL27C PE=2 SV=2)

HSP 1 Score: 221.1 bits (562), Expect = 7.6e-57
Identity = 106/135 (78.52%), Postives = 122/135 (90.37%), Query Frame = 0 

Query: 1   MVKFIKPNKAVVVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVVRKDSKK 60
           MVKF+K NKAV++LQGR+AG+KAVI+++FD+G RDRPYGHCLVAG+KKYPSKV+RKDS K
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGNRDRPYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120
           KT KKSRVK FIKLVNYQH+MPTRYTLDVDLK+V  +D LQSK  KVAA KE K +LE+R
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALQSKDKKVAALKEAKAKLEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]
BLAST of CsaV3_4G032310 vs. Swiss-Prot
Match: sp|Q05462|RL27_PEA (60S ribosomal protein L27 OS=Pisum sativum OX=3888 GN=RPL27 PE=2 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 1.7e-56
Identity = 106/135 (78.52%), Postives = 122/135 (90.37%), Query Frame = 0 

Query: 1   MVKFIKPNKAVVVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVVRKDSKK 60
           MVKF+KPNKAV++LQGR+AG+KAVIV+ FD+GTR++PYGHCLVAG+KK+PSKV++KDS K
Sbjct: 1   MVKFLKPNKAVILLQGRYAGKKAVIVKTFDDGTREKPYGHCLVAGIKKFPSKVIKKDSAK 60

Query: 61  KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120
           KT KKSRVKAF+KLVNYQH+MPTRYTLDVDLKD V  D LQSK  KV A KE KK LE+R
Sbjct: 61  KTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDAVVPDVLQSKDKKVTALKETKKSLEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]
BLAST of CsaV3_4G032310 vs. Swiss-Prot
Match: sp|Q8LCL3|RL272_ARATH (60S ribosomal protein L27-2 OS=Arabidopsis thaliana OX=3702 GN=RPL27B PE=2 SV=2)

HSP 1 Score: 214.2 bits (544), Expect = 9.3e-55
Identity = 103/135 (76.30%), Postives = 120/135 (88.89%), Query Frame = 0 

Query: 1   MVKFIKPNKAVVVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVVRKDSKK 60
           MVKF+K NKAV++LQGR+AG+KAVI+++FD+GT DR YGHCLVAG+KKYPSKV+RKDS K
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGTSDRRYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120
           KT KKSRVK FIKLVNYQH+MPTRYTLDVDLK+V  +D L+SK  KV A KE K +LE+R
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALKSKDKKVTALKEAKAKLEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]
BLAST of CsaV3_4G032310 vs. Swiss-Prot
Match: sp|P41101|RL27_SOLTU (60S ribosomal protein L27 OS=Solanum tuberosum OX=4113 GN=RPL27 PE=2 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.3e-51
Identity = 104/139 (74.82%), Postives = 116/139 (83.45%), Query Frame = 0 

Query: 1   MVKFIKPNKAVVVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVVRKDSKK 60
           M KF+KPNKAV++LQG++AGRKAVIVR FDEGTRDRPYGHCLVAG+ +YP KV+RKDS K
Sbjct: 1   MEKFLKPNKAVILLQGKYAGRKAVIVRAFDEGTRDRPYGHCLVAGISRYPKKVIRKDSAK 60

Query: 61  KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDL----KDVVNVDCLQSKVSKVAASKEIKKR 120
           K  KKSRVKAFIKLVNY HIMPTRYTLD DL    KDVVN D LQ++  KV A +  K R
Sbjct: 61  KAGKKSRVKAFIKLVNYNHIMPTRYTLDEDLKDVVKDVVNADVLQARDKKVTA-RRTKAR 120

Query: 121 LEDRFKTGKNRWFFTKLRF 136
           L +RFKTGKNRWFFTKLRF
Sbjct: 121 LAERFKTGKNRWFFTKLRF 138

[Close]
BLAST of CsaV3_4G032310 vs. Swiss-Prot
Match: sp|Q9SKX8|RL271_ARATH (60S ribosomal protein L27-1 OS=Arabidopsis thaliana OX=3702 GN=RPL27A PE=2 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 4.8e-51
Identity = 95/135 (70.37%), Postives = 116/135 (85.93%), Query Frame = 0 

Query: 1   MVKFIKPNKAVVVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVVRKDSKK 60
           MVK +KP KAV++LQGR+ G+KAVIV++FD+GT ++ YGHCLVAG+KKYPSKV+RKDS K
Sbjct: 1   MVKCMKPGKAVILLQGRYTGKKAVIVKSFDDGTVEKKYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120
           KT KKSRVK F K++NYQH+MPTRYTLD+DLK+VV+ D + SK  KV A KE K + E+R
Sbjct: 61  KTAKKSRVKCFFKVINYQHVMPTRYTLDLDLKNVVSADAISSKDKKVTALKEAKAKFEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]
BLAST of CsaV3_4G032310 vs. TrEMBL
Match: tr|A0A1S3CNL3|A0A1S3CNL3_CUCME (60S ribosomal protein L27 OS=Cucumis melo OX=3656 GN=LOC103502503 PE=3 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 1.9e-68
Identity = 133/135 (98.52%), Postives = 135/135 (100.00%), Query Frame = 0 

Query: 1   MVKFIKPNKAVVVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVVRKDSKK 60
           MVKFIKPNKAV+VLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKV+RKDSKK
Sbjct: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60

Query: 61  KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120
           KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR
Sbjct: 61  KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]
BLAST of CsaV3_4G032310 vs. TrEMBL
Match: tr|A0A0A0L310|A0A0A0L310_CUCSA (60S ribosomal protein L27 OS=Cucumis sativus OX=3659 GN=Csa_4G618420 PE=3 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 5.4e-68
Identity = 134/135 (99.26%), Postives = 134/135 (99.26%), Query Frame = 0 

Query: 1   MVKFIKPNKAVVVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVVRKDSKK 60
           MVKFIKPNKAVVVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVVRKDSKK
Sbjct: 1   MVKFIKPNKAVVVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVVRKDSKK 60

Query: 61  KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120
           KTDKKSRVKAFIKL NYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR
Sbjct: 61  KTDKKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]
BLAST of CsaV3_4G032310 vs. TrEMBL
Match: tr|A0A0A0K3A4|A0A0A0K3A4_CUCSA (60S ribosomal protein L27 OS=Cucumis sativus OX=3659 GN=Csa_7G209560 PE=3 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 3.0e-66
Identity = 129/135 (95.56%), Postives = 134/135 (99.26%), Query Frame = 0 

Query: 1   MVKFIKPNKAVVVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVVRKDSKK 60
           MVKFIKPNKAV+VLQGR+AGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVVRKDSKK
Sbjct: 1   MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVVRKDSKK 60

Query: 61  KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120
           KTDKKSRVKAFIKL NYQHIMPTRYTLDVDLKDVVNVDCLQS+VSKV+ASKEIKKRLE+R
Sbjct: 61  KTDKKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCLQSRVSKVSASKEIKKRLENR 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]
BLAST of CsaV3_4G032310 vs. TrEMBL
Match: tr|A0A2N9FTH9|A0A2N9FTH9_FAGSY (60S ribosomal protein L27 OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS21879 PE=3 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 2.1e-59
Identity = 115/135 (85.19%), Postives = 126/135 (93.33%), Query Frame = 0 

Query: 1   MVKFIKPNKAVVVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVVRKDSKK 60
           MVKF+KPNKAV++LQGR+AGRKAVIVR FDEGTRDRPYGHCLVAG+ KYPSKV+RKDS K
Sbjct: 1   MVKFLKPNKAVILLQGRYAGRKAVIVRAFDEGTRDRPYGHCLVAGISKYPSKVIRKDSAK 60

Query: 61  KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120
           KT KKSRVKAF+KLVN+QH+MPTRYTLDVDLKD V+VDCLQSK  KV A+KE KKRLEDR
Sbjct: 61  KTAKKSRVKAFVKLVNFQHLMPTRYTLDVDLKDAVSVDCLQSKDKKVTAAKETKKRLEDR 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

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BLAST of CsaV3_4G032310 vs. TrEMBL
Match: tr|A0A2N9J910|A0A2N9J910_FAGSY (60S ribosomal protein L27 OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS60773 PE=3 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 1.3e-58
Identity = 114/135 (84.44%), Postives = 127/135 (94.07%), Query Frame = 0 

Query: 1   MVKFIKPNKAVVVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVVRKDSKK 60
           MVKF+KPNKAV++LQGR+AGRKAVIVR FD+GTRDRPYGHCLVAG+ KYPSKV+RKDS K
Sbjct: 1   MVKFLKPNKAVILLQGRYAGRKAVIVRAFDDGTRDRPYGHCLVAGISKYPSKVIRKDSAK 60

Query: 61  KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120
           KT KKSRVKAF+KLVN+QH+MPTRYTLDVDLKDVV+VD LQSK  KV A+KEIKK+LEDR
Sbjct: 61  KTAKKSRVKAFVKLVNFQHLMPTRYTLDVDLKDVVSVDSLQSKDKKVTAAKEIKKKLEDR 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

The following BLAST results are available for this feature:
BLAST of CsaV3_4G032310 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008464678.12.8e-6898.52PREDICTED: 60S ribosomal protein L27-3-like [Cucumis melo][more]
XP_004145994.28.2e-6899.26PREDICTED: 60S ribosomal protein L27-3-like [Cucumis sativus] >KGN54977.1 60S ri... [more]
XP_022940098.12.6e-6696.3060S ribosomal protein L27-3-like [Cucurbita moschata][more]
XP_011658974.14.5e-6695.56PREDICTED: 60S ribosomal protein L27-like [Cucumis sativus] >KGN44160.1 hypothet... [more]
XP_022981139.11.1e-6494.0760S ribosomal protein L27-like [Cucurbita maxima][more]
BLAST of CsaV3_4G032310 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G15000.14.2e-5878.52Ribosomal L27e protein family[more]
AT3G22230.15.1e-5676.30Ribosomal L27e protein family[more]
AT2G32220.12.6e-5270.37Ribosomal L27e protein family[more]
BLAST of CsaV3_4G032310 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P51419|RL273_ARATH7.6e-5778.5260S ribosomal protein L27-3 OS=Arabidopsis thaliana OX=3702 GN=RPL27C PE=2 SV=2[more]
sp|Q05462|RL27_PEA1.7e-5678.5260S ribosomal protein L27 OS=Pisum sativum OX=3888 GN=RPL27 PE=2 SV=1[more]
sp|Q8LCL3|RL272_ARATH9.3e-5576.3060S ribosomal protein L27-2 OS=Arabidopsis thaliana OX=3702 GN=RPL27B PE=2 SV=2[more]
sp|P41101|RL27_SOLTU1.3e-5174.8260S ribosomal protein L27 OS=Solanum tuberosum OX=4113 GN=RPL27 PE=2 SV=1[more]
sp|Q9SKX8|RL271_ARATH4.8e-5170.3760S ribosomal protein L27-1 OS=Arabidopsis thaliana OX=3702 GN=RPL27A PE=2 SV=1[more]
BLAST of CsaV3_4G032310 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CNL3|A0A1S3CNL3_CUCME1.9e-6898.5260S ribosomal protein L27 OS=Cucumis melo OX=3656 GN=LOC103502503 PE=3 SV=1[more]
tr|A0A0A0L310|A0A0A0L310_CUCSA5.4e-6899.2660S ribosomal protein L27 OS=Cucumis sativus OX=3659 GN=Csa_4G618420 PE=3 SV=1[more]
tr|A0A0A0K3A4|A0A0A0K3A4_CUCSA3.0e-6695.5660S ribosomal protein L27 OS=Cucumis sativus OX=3659 GN=Csa_7G209560 PE=3 SV=1[more]
tr|A0A2N9FTH9|A0A2N9FTH9_FAGSY2.1e-5985.1960S ribosomal protein L27 OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS21879 PE=3 SV=... [more]
tr|A0A2N9J910|A0A2N9J910_FAGSY1.3e-5884.4460S ribosomal protein L27 OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS60773 PE=3 SV=... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR008991Translation_prot_SH3-like_sf
IPR018262Ribosomal_L27e_CS
IPR038655L27e_sf
IPR001141Ribosomal_L27e
IPR005824KOW
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0001510 RNA methylation
biological_process GO:0008150 biological_process
cellular_component GO:0005840 ribosome
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0005575 cellular_component
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G032310.1CsaV3_4G032310.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005824KOWSMARTSM00739kow_9coord: 4..31
e-value: 0.0049
score: 26.1
IPR001141Ribosomal protein L27ePFAMPF01777Ribosomal_L27ecoord: 52..135
e-value: 9.2E-32
score: 109.2
IPR001141Ribosomal protein L27ePANTHERPTHR1049760S RIBOSOMAL PROTEIN L27coord: 1..135
IPR001141Ribosomal protein L27ePRODOMPD009396coord: 70..135
e-value: 2.0E-17
score: 214.0
IPR038655Ribosomal protein L27e superfamilyGENE3DG3DSA:2.30.30.770coord: 1..135
e-value: 3.8E-57
score: 194.1
NoneNo IPR availablePANTHERPTHR10497:SF460S RIBOSOMAL PROTEIN L27-1-RELATEDcoord: 1..135
NoneNo IPR availableCDDcd06090KOW_RPL27coord: 6..88
e-value: 3.17873E-35
score: 117.67
IPR018262Ribosomal protein L27e, conserved sitePROSITEPS01107RIBOSOMAL_L27Ecoord: 124..135
IPR008991Translation protein SH3-like domain superfamilySUPERFAMILYSSF50104Translation proteins SH3-like domaincoord: 2..135

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_4G032310CSPI04G21960Wild cucumber (PI 183967)cpicucB212
CsaV3_4G032310CSPI04G07180Wild cucumber (PI 183967)cpicucB225
CsaV3_4G032310Cucsa.058460Cucumber (Gy14) v1cgycucB045
CsaV3_4G032310Cucsa.179990Cucumber (Gy14) v1cgycucB288
CsaV3_4G032310CmaCh16G004850Cucurbita maxima (Rimu)cmacucB0392
CsaV3_4G032310CmaCh01G013320Cucurbita maxima (Rimu)cmacucB0556
CsaV3_4G032310CmoCh09G007030Cucurbita moschata (Rifu)cmocucB0019
CsaV3_4G032310CmoCh01G013880Cucurbita moschata (Rifu)cmocucB0543
CsaV3_4G032310CsGy4G020470Cucumber (Gy14) v2cgybcucB171
CsaV3_4G032310CsGy4G007090Cucumber (Gy14) v2cgybcucB175
CsaV3_4G032310Cla023264Watermelon (97103) v1cucwmB367
CsaV3_4G032310MELO3C026403Melon (DHL92) v3.5.1cucmeB303
CsaV3_4G032310ClCG11G016790Watermelon (Charleston Gray)cucwcgB288
CsaV3_4G032310ClCG07G010880Watermelon (Charleston Gray)cucwcgB342
CsaV3_4G032310Lsi04G019210Bottle gourd (USVL1VR-Ls)cuclsiB304
CsaV3_4G032310Lsi07G008010Bottle gourd (USVL1VR-Ls)cuclsiB335
CsaV3_4G032310MELO3C026403.2Melon (DHL92) v3.6.1cucmedB295
CsaV3_4G032310Cla97C11G222720Watermelon (97103) v2cucwmbB281
CsaV3_4G032310Bhi09G002966Wax gourdcucwgoB426
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CsaV3_4G032310CsaV3_4G007410Cucumber (Chinese Long) v3cuccucB166
The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G032310Silver-seed gourdcarcucB0671
CsaV3_4G032310Cucurbita maxima (Rimu)cmacucB0032
CsaV3_4G032310Cucurbita pepo (Zucchini)cpecucB0702
CsaV3_4G032310Cucurbita pepo (Zucchini)cpecucB0710
CsaV3_4G032310Cucurbita pepo (Zucchini)cpecucB0973
CsaV3_4G032310Wild cucumber (PI 183967)cpicucB217
CsaV3_4G032310Wax gourdcucwgoB432