CmoCh01G013880 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh01G013880
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	60S ribosomal protein L27
Location	Cmo_Chr01 : 10954119 .. 10954526 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAAATTTATAAAGCCGAACAAAGCAGTTATTGTTCTCCAAGGCCGATTCGCCGGGCGTAAGGCTGTGATTGTACGCAACTTCGATGACGGAACCCGCGATCGGCCCTATGGCCATTGTTTGGTTGCAGGGATGAAGAAGTACCCGAGCAAAGTGATTCGTAAAGATTCGACGAAGAAGACGGCGAAGAAATCGAGAGTGAAGGCTTTCATCAAGCTTGTGAACTACCAGCACATAATGCCGACAAGGTACACGCTCGATGTTGATCTCAAGGATGTGGTTAATGTGGATTGTTTGCAGTCGAAGGTCTCGAAGGTCGCGGCTTCGAAGGAGATCAAGAAGAGGTTGGAGGACAGGTTTAAGACTGGGAAGAACAGGTGGTTTTTTACCAAGCTTAGGTTCTGA

mRNA sequence

ATGGTGAAATTTATAAAGCCGAACAAAGCAGTTATTGTTCTCCAAGGCCGATTCGCCGGGCGTAAGGCTGTGATTGTACGCAACTTCGATGACGGAACCCGCGATCGGCCCTATGGCCATTGTTTGGTTGCAGGGATGAAGAAGTACCCGAGCAAAGTGATTCGTAAAGATTCGACGAAGAAGACGGCGAAGAAATCGAGAGTGAAGGCTTTCATCAAGCTTGTGAACTACCAGCACATAATGCCGACAAGGTACACGCTCGATGTTGATCTCAAGGATGTGGTTAATGTGGATTGTTTGCAGTCGAAGGTCTCGAAGGTCGCGGCTTCGAAGGAGATCAAGAAGAGGTTGGAGGACAGGTTTAAGACTGGGAAGAACAGGTGGTTTTTTACCAAGCTTAGGTTCTGA

Coding sequence (CDS)

ATGGTGAAATTTATAAAGCCGAACAAAGCAGTTATTGTTCTCCAAGGCCGATTCGCCGGGCGTAAGGCTGTGATTGTACGCAACTTCGATGACGGAACCCGCGATCGGCCCTATGGCCATTGTTTGGTTGCAGGGATGAAGAAGTACCCGAGCAAAGTGATTCGTAAAGATTCGACGAAGAAGACGGCGAAGAAATCGAGAGTGAAGGCTTTCATCAAGCTTGTGAACTACCAGCACATAATGCCGACAAGGTACACGCTCGATGTTGATCTCAAGGATGTGGTTAATGTGGATTGTTTGCAGTCGAAGGTCTCGAAGGTCGCGGCTTCGAAGGAGATCAAGAAGAGGTTGGAGGACAGGTTTAAGACTGGGAAGAACAGGTGGTTTTTTACCAAGCTTAGGTTCTGA

Homology

[Close]

BLAST of CmoCh01G013880 vs. Swiss-Prot
Match: RL273_ARATH (60S ribosomal protein L27-3 OS=Arabidopsis thaliana GN=RPL27C PE=2 SV=2)

HSP 1 Score: 226.5 bits (576), Expect = 1.8e-58
Identity = 110/135 (81.48%), Postives = 123/135 (91.11%), Query Frame = 1


Query: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTK 60
           MVKF+K NKAVI+LQGR+AG+KAVI+++FDDG RDRPYGHCLVAG+KKYPSKVIRKDS K
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGNRDRPYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120
           KTAKKSRVK FIKLVNYQH+MPTRYTLDVDLK+V  +D LQSK  KVAA KE K +LE+R
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALQSKDKKVAALKEAKAKLEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of CmoCh01G013880 vs. Swiss-Prot
Match: RL27_PEA (60S ribosomal protein L27 OS=Pisum sativum GN=RPL27 PE=2 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 3.9e-58
Identity = 110/135 (81.48%), Postives = 123/135 (91.11%), Query Frame = 1


Query: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTK 60
           MVKF+KPNKAVI+LQGR+AG+KAVIV+ FDDGTR++PYGHCLVAG+KK+PSKVI+KDS K
Sbjct: 1   MVKFLKPNKAVILLQGRYAGKKAVIVKTFDDGTREKPYGHCLVAGIKKFPSKVIKKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120
           KTAKKSRVKAF+KLVNYQH+MPTRYTLDVDLKD V  D LQSK  KV A KE KK LE+R
Sbjct: 61  KTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDAVVPDVLQSKDKKVTALKETKKSLEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of CmoCh01G013880 vs. Swiss-Prot
Match: RL272_ARATH (60S ribosomal protein L27-2 OS=Arabidopsis thaliana GN=RPL27B PE=2 SV=2)

HSP 1 Score: 219.5 bits (558), Expect = 2.2e-56
Identity = 107/135 (79.26%), Postives = 121/135 (89.63%), Query Frame = 1


Query: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTK 60
           MVKF+K NKAVI+LQGR+AG+KAVI+++FDDGT DR YGHCLVAG+KKYPSKVIRKDS K
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGTSDRRYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120
           KTAKKSRVK FIKLVNYQH+MPTRYTLDVDLK+V  +D L+SK  KV A KE K +LE+R
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALKSKDKKVTALKEAKAKLEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of CmoCh01G013880 vs. Swiss-Prot
Match: RL271_ARATH (60S ribosomal protein L27-1 OS=Arabidopsis thaliana GN=RPL27A PE=2 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 1.1e-52
Identity = 99/135 (73.33%), Postives = 117/135 (86.67%), Query Frame = 1


Query: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTK 60
           MVK +KP KAVI+LQGR+ G+KAVIV++FDDGT ++ YGHCLVAG+KKYPSKVIRKDS K
Sbjct: 1   MVKCMKPGKAVILLQGRYTGKKAVIVKSFDDGTVEKKYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120
           KTAKKSRVK F K++NYQH+MPTRYTLD+DLK+VV+ D + SK  KV A KE K + E+R
Sbjct: 61  KTAKKSRVKCFFKVINYQHVMPTRYTLDLDLKNVVSADAISSKDKKVTALKEAKAKFEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of CmoCh01G013880 vs. Swiss-Prot
Match: RL27_SOLTU (60S ribosomal protein L27 OS=Solanum tuberosum GN=RPL27 PE=2 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 9.4e-52
Identity = 105/139 (75.54%), Postives = 116/139 (83.45%), Query Frame = 1


Query: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTK 60
           M KF+KPNKAVI+LQG++AGRKAVIVR FD+GTRDRPYGHCLVAG+ +YP KVIRKDS K
Sbjct: 1   MEKFLKPNKAVILLQGKYAGRKAVIVRAFDEGTRDRPYGHCLVAGISRYPKKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYQHIMPTRYTLDVDL----KDVVNVDCLQSKVSKVAASKEIKKR 120
           K  KKSRVKAFIKLVNY HIMPTRYTLD DL    KDVVN D LQ++  KV A +  K R
Sbjct: 61  KAGKKSRVKAFIKLVNYNHIMPTRYTLDEDLKDVVKDVVNADVLQARDKKVTA-RRTKAR 120

Query: 121 LEDRFKTGKNRWFFTKLRF 136
           L +RFKTGKNRWFFTKLRF
Sbjct: 121 LAERFKTGKNRWFFTKLRF 138

[Close]

BLAST of CmoCh01G013880 vs. TrEMBL
Match: A0A0A0L310_CUCSA (60S ribosomal protein L27 OS=Cucumis sativus GN=Csa_4G618420 PE=3 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 3.6e-66
Identity = 129/135 (95.56%), Postives = 132/135 (97.78%), Query Frame = 1


Query: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTK 60
           MVKFIKPNKAV+VLQGRFAGRKAVIVRNFD+GTRDRPYGHCLVAGMKKYPSKV+RKDS K
Sbjct: 1   MVKFIKPNKAVVVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVVRKDSKK 60

Query: 61  KTAKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120
           KT KKSRVKAFIKL NYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR
Sbjct: 61  KTDKKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of CmoCh01G013880 vs. TrEMBL
Match: A0A0A0K3A4_CUCSA (60S ribosomal protein L27 OS=Cucumis sativus GN=Csa_7G209560 PE=3 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 1.1e-64
Identity = 126/135 (93.33%), Postives = 132/135 (97.78%), Query Frame = 1


Query: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTK 60
           MVKFIKPNKAVIVLQGR+AGRKAVIVRNFD+GTRDRPYGHCLVAGMKKYPSKV+RKDS K
Sbjct: 1   MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVVRKDSKK 60

Query: 61  KTAKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120
           KT KKSRVKAFIKL NYQHIMPTRYTLDVDLKDVVNVDCLQS+VSKV+ASKEIKKRLE+R
Sbjct: 61  KTDKKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCLQSRVSKVSASKEIKKRLENR 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of CmoCh01G013880 vs. TrEMBL
Match: A0A067JR88_JATCU (60S ribosomal protein L27 OS=Jatropha curcas GN=JCGZ_02471 PE=3 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 3.2e-59
Identity = 115/135 (85.19%), Postives = 126/135 (93.33%), Query Frame = 1


Query: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTK 60
           MVKF+KPNKAVIVLQGR+AGRKAVI+++FD+GTRDRPYGHCLVAG+KKYPSKVI+KDS K
Sbjct: 1   MVKFLKPNKAVIVLQGRYAGRKAVIIKSFDEGTRDRPYGHCLVAGIKKYPSKVIKKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120
           KTAKKSRVK FIKLVNYQH+MPTRYTLDVDLKDVV VD LQSK  KVAA+KE K R E+R
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKDVVTVDSLQSKEKKVAAAKETKARFEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of CmoCh01G013880 vs. TrEMBL
Match: A0A059C645_EUCGR (60S ribosomal protein L27 OS=Eucalyptus grandis GN=EUGRSUZ_E02329 PE=3 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 3.2e-59
Identity = 114/135 (84.44%), Postives = 126/135 (93.33%), Query Frame = 1


Query: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTK 60
           MVKF+KP KAV+VLQGR+AGRKAVIVRNFDDGTRDRPYGHCLVAG+KKYP+KV++KDS K
Sbjct: 1   MVKFLKPGKAVVVLQGRYAGRKAVIVRNFDDGTRDRPYGHCLVAGIKKYPAKVVKKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120
           KTAKKSRVKAF+KLVNY+H+MPTRYTLDVDLKD V VD LQSK  KV A+KE KKRLE+R
Sbjct: 61  KTAKKSRVKAFVKLVNYRHLMPTRYTLDVDLKDAVAVDSLQSKDKKVTAAKEAKKRLEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of CmoCh01G013880 vs. TrEMBL
Match: V7CL69_PHAVU (60S ribosomal protein L27 OS=Phaseolus vulgaris GN=PHAVU_002G190100g PE=3 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 5.5e-59
Identity = 115/135 (85.19%), Postives = 124/135 (91.85%), Query Frame = 1


Query: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTK 60
           MVKF+KPNKAVIVLQGR+AGRK VIVR FDDGTR+RPYGHCLVAG+KKYPSKVI+KDS K
Sbjct: 1   MVKFLKPNKAVIVLQGRYAGRKGVIVRTFDDGTRERPYGHCLVAGIKKYPSKVIKKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120
           KTAKKSRVKAF+KLVNYQH+MPTRYTLDVDLKD VN+D L SK  KV A KE KKRLE+R
Sbjct: 61  KTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDAVNLDVLSSKDKKVTALKETKKRLEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of CmoCh01G013880 vs. TAIR10
Match: AT4G15000.1 (AT4G15000.1 Ribosomal L27e protein family)

HSP 1 Score: 226.5 bits (576), Expect = 9.9e-60
Identity = 110/135 (81.48%), Postives = 123/135 (91.11%), Query Frame = 1


Query: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTK 60
           MVKF+K NKAVI+LQGR+AG+KAVI+++FDDG RDRPYGHCLVAG+KKYPSKVIRKDS K
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGNRDRPYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120
           KTAKKSRVK FIKLVNYQH+MPTRYTLDVDLK+V  +D LQSK  KVAA KE K +LE+R
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALQSKDKKVAALKEAKAKLEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of CmoCh01G013880 vs. TAIR10
Match: AT3G22230.1 (AT3G22230.1 Ribosomal L27e protein family)

HSP 1 Score: 219.5 bits (558), Expect = 1.2e-57
Identity = 107/135 (79.26%), Postives = 121/135 (89.63%), Query Frame = 1


Query: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTK 60
           MVKF+K NKAVI+LQGR+AG+KAVI+++FDDGT DR YGHCLVAG+KKYPSKVIRKDS K
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGTSDRRYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120
           KTAKKSRVK FIKLVNYQH+MPTRYTLDVDLK+V  +D L+SK  KV A KE K +LE+R
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALKSKDKKVTALKEAKAKLEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of CmoCh01G013880 vs. TAIR10
Match: AT2G32220.1 (AT2G32220.1 Ribosomal L27e protein family)

HSP 1 Score: 207.2 bits (526), Expect = 6.2e-54
Identity = 99/135 (73.33%), Postives = 117/135 (86.67%), Query Frame = 1


Query: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTK 60
           MVK +KP KAVI+LQGR+ G+KAVIV++FDDGT ++ YGHCLVAG+KKYPSKVIRKDS K
Sbjct: 1   MVKCMKPGKAVILLQGRYTGKKAVIVKSFDDGTVEKKYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120
           KTAKKSRVK F K++NYQH+MPTRYTLD+DLK+VV+ D + SK  KV A KE K + E+R
Sbjct: 61  KTAKKSRVKCFFKVINYQHVMPTRYTLDLDLKNVVSADAISSKDKKVTALKEAKAKFEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of CmoCh01G013880 vs. NCBI nr
Match: gi|659129420|ref|XP_008464678.1| (PREDICTED: 60S ribosomal protein L27-3-like [Cucumis melo])

HSP 1 Score: 261.9 bits (668), Expect = 6.1e-67
Identity = 132/135 (97.78%), Postives = 133/135 (98.52%), Query Frame = 1


Query: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTK 60
           MVKFIKPNKAVIVLQGRFAGRKAVIVRNFD+GTRDRPYGHCLVAGMKKYPSKVIRKDS K
Sbjct: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60

Query: 61  KTAKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120
           KT KKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR
Sbjct: 61  KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of CmoCh01G013880 vs. NCBI nr
Match: gi|778695465|ref|XP_004145994.2| (PREDICTED: 60S ribosomal protein L27-3-like [Cucumis sativus])

HSP 1 Score: 258.8 bits (660), Expect = 5.1e-66
Identity = 129/135 (95.56%), Postives = 132/135 (97.78%), Query Frame = 1


Query: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTK 60
           MVKFIKPNKAV+VLQGRFAGRKAVIVRNFD+GTRDRPYGHCLVAGMKKYPSKV+RKDS K
Sbjct: 1   MVKFIKPNKAVVVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVVRKDSKK 60

Query: 61  KTAKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120
           KT KKSRVKAFIKL NYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR
Sbjct: 61  KTDKKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of CmoCh01G013880 vs. NCBI nr
Match: gi|778725645|ref|XP_011658974.1| (PREDICTED: 60S ribosomal protein L27-like [Cucumis sativus])

HSP 1 Score: 253.8 bits (647), Expect = 1.6e-64
Identity = 126/135 (93.33%), Postives = 132/135 (97.78%), Query Frame = 1


Query: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTK 60
           MVKFIKPNKAVIVLQGR+AGRKAVIVRNFD+GTRDRPYGHCLVAGMKKYPSKV+RKDS K
Sbjct: 1   MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVVRKDSKK 60

Query: 61  KTAKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120
           KT KKSRVKAFIKL NYQHIMPTRYTLDVDLKDVVNVDCLQS+VSKV+ASKEIKKRLE+R
Sbjct: 61  KTDKKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCLQSRVSKVSASKEIKKRLENR 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of CmoCh01G013880 vs. NCBI nr
Match: gi|702320778|ref|XP_010052670.1| (PREDICTED: 60S ribosomal protein L27-like [Eucalyptus grandis])

HSP 1 Score: 242.3 bits (617), Expect = 5.0e-61
Identity = 117/135 (86.67%), Postives = 127/135 (94.07%), Query Frame = 1


Query: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTK 60
           MVKF+KP KAVIVLQGR+AGRKAVI+RNFDDGTRDRPYGHCLVAG+KKYPSKVI+KDSTK
Sbjct: 1   MVKFLKPGKAVIVLQGRYAGRKAVIIRNFDDGTRDRPYGHCLVAGIKKYPSKVIKKDSTK 60

Query: 61  KTAKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120
           KT KKSRVK F+KLVNY+H+MPTRYTLDVDLKDVVN DCLQSK  KV A+KE KKRLE+R
Sbjct: 61  KTGKKSRVKTFVKLVNYRHLMPTRYTLDVDLKDVVNPDCLQSKDKKVTAAKETKKRLEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of CmoCh01G013880 vs. NCBI nr
Match: gi|658043732|ref|XP_008357506.1| (PREDICTED: 60S ribosomal protein L27-like [Malus domestica])

HSP 1 Score: 239.2 bits (609), Expect = 4.2e-60
Identity = 117/135 (86.67%), Postives = 127/135 (94.07%), Query Frame = 1


Query: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTK 60
           MVKF+KPNKAVI LQGR+AGRKAVIVR FD+GTRDRPYGHCLVAG+KKYP+KVIRKDS K
Sbjct: 1   MVKFLKPNKAVINLQGRYAGRKAVIVRAFDEGTRDRPYGHCLVAGIKKYPAKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120
           KTAKKSRVKAFIKLVNYQH+MPTRYTLDVDLKDVVNV+CLQ+K  KV A KE+KKR E+R
Sbjct: 61  KTAKKSRVKAFIKLVNYQHLMPTRYTLDVDLKDVVNVECLQTKDKKVTALKEVKKRFEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

The following BLAST results are available for this feature:

BLAST of CmoCh01G013880 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL273_ARATH	1.8e-58	81.48	60S ribosomal protein L27-3 OS=Arabidopsis thaliana GN=RPL27C PE=2 SV=2	[more]
RL27_PEA	3.9e-58	81.48	60S ribosomal protein L27 OS=Pisum sativum GN=RPL27 PE=2 SV=1	[more]
RL272_ARATH	2.2e-56	79.26	60S ribosomal protein L27-2 OS=Arabidopsis thaliana GN=RPL27B PE=2 SV=2	[more]
RL271_ARATH	1.1e-52	73.33	60S ribosomal protein L27-1 OS=Arabidopsis thaliana GN=RPL27A PE=2 SV=1	[more]
RL27_SOLTU	9.4e-52	75.54	60S ribosomal protein L27 OS=Solanum tuberosum GN=RPL27 PE=2 SV=1	[more]

BLAST of CmoCh01G013880 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L310_CUCSA	3.6e-66	95.56	60S ribosomal protein L27 OS=Cucumis sativus GN=Csa_4G618420 PE=3 SV=1	[more]
A0A0A0K3A4_CUCSA	1.1e-64	93.33	60S ribosomal protein L27 OS=Cucumis sativus GN=Csa_7G209560 PE=3 SV=1	[more]
A0A067JR88_JATCU	3.2e-59	85.19	60S ribosomal protein L27 OS=Jatropha curcas GN=JCGZ_02471 PE=3 SV=1	[more]
A0A059C645_EUCGR	3.2e-59	84.44	60S ribosomal protein L27 OS=Eucalyptus grandis GN=EUGRSUZ_E02329 PE=3 SV=1	[more]
V7CL69_PHAVU	5.5e-59	85.19	60S ribosomal protein L27 OS=Phaseolus vulgaris GN=PHAVU_002G190100g PE=3 SV=1	[more]

BLAST of CmoCh01G013880 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G15000.1	9.9e-60	81.48	Ribosomal L27e protein family	[more]
AT3G22230.1	1.2e-57	79.26	Ribosomal L27e protein family	[more]
AT2G32220.1	6.2e-54	73.33	Ribosomal L27e protein family	[more]

BLAST of CmoCh01G013880 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659129420\|ref\|XP_008464678.1\|	6.1e-67	97.78	PREDICTED: 60S ribosomal protein L27-3-like [Cucumis melo]	[more]
gi\|778695465\|ref\|XP_004145994.2\|	5.1e-66	95.56	PREDICTED: 60S ribosomal protein L27-3-like [Cucumis sativus]	[more]
gi\|778725645\|ref\|XP_011658974.1\|	1.6e-64	93.33	PREDICTED: 60S ribosomal protein L27-like [Cucumis sativus]	[more]
gi\|702320778\|ref\|XP_010052670.1\|	5.0e-61	86.67	PREDICTED: 60S ribosomal protein L27-like [Eucalyptus grandis]	[more]
gi\|658043732\|ref\|XP_008357506.1\|	4.2e-60	86.67	PREDICTED: 60S ribosomal protein L27-like [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001141	Ribosomal_L27e
IPR005824	KOW
IPR008991	Translation_prot_SH3-like_sf
IPR014722	Rib_L2_dom2
IPR018262	Ribosomal_L27e_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0008150	biological_process
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G013880.1	CmoCh01G013880.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001141	Ribosomal protein L27e	PRODOM	PD009396		coord: 60..135 score: 3.0
IPR001141	Ribosomal protein L27e	PANTHER	PTHR10497	60S RIBOSOMAL PROTEIN L27	coord: 2..135 score: 1.3
IPR001141	Ribosomal protein L27e	PFAM	PF01777	Ribosomal_L27e	coord: 52..135 score: 9.2
IPR005824	KOW	SMART	SM00739	kow_9	coord: 4..31 score: 0.
IPR008991	Translation protein SH3-like domain	unknown	SSF50104	Translation proteins SH3-like domain	coord: 2..135 score: 2.31
IPR014722	Ribosomal protein L2 domain 2	GENE3D	G3DSA:2.30.30.30		coord: 3..118 score: 1.1
IPR018262	Ribosomal protein L27e, conserved site	PROSITE	PS01107	RIBOSOMAL_L27E	coord: 124..135 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh01G013880	Cucsa.058460	Cucumber (Gy14) v1	cgycmoB0074
CmoCh01G013880	CmaCh01G013320	Cucurbita maxima (Rimu)	cmacmoB468
CmoCh01G013880	Cla023264	Watermelon (97103) v1	cmowmB453
CmoCh01G013880	Csa4G618420	Cucumber (Chinese Long) v2	cmocuB455
CmoCh01G013880	MELO3C026403	Melon (DHL92) v3.5.1	cmomeB430
CmoCh01G013880	ClCG11G016790	Watermelon (Charleston Gray)	cmowcgB387
CmoCh01G013880	CSPI04G07180	Wild cucumber (PI 183967)	cmocpiB473
CmoCh01G013880	CSPI04G21960	Wild cucumber (PI 183967)	cmocpiB459
CmoCh01G013880	Lsi04G019210	Bottle gourd (USVL1VR-Ls)	cmolsiB415
CmoCh01G013880	MELO3C026403.2	Melon (DHL92) v3.6.1	cmomedB494
CmoCh01G013880	CsaV3_4G032310	Cucumber (Chinese Long) v3	cmocucB0543
CmoCh01G013880	CsaV3_4G007410	Cucumber (Chinese Long) v3	cmocucB0560
CmoCh01G013880	Cla97C11G222720	Watermelon (97103) v2	cmowmbB430
CmoCh01G013880	Bhi09G002966	Wax gourd	cmowgoB0620
CmoCh01G013880	CsGy4G020470	Cucumber (Gy14) v2	cgybcmoB477

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh01G013880	CmoCh09G007030	Cucurbita moschata (Rifu)	cmocmoB022

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh01G013880	Melon (DHL92) v3.6.1	cmomedB487
CmoCh01G013880	Melon (DHL92) v3.6.1	cmomedB503
CmoCh01G013880	Silver-seed gourd	carcmoB0881
CmoCh01G013880	Silver-seed gourd	carcmoB1400
CmoCh01G013880	Cucurbita moschata (Rifu)	cmocmoB013
CmoCh01G013880	Cucurbita maxima (Rimu)	cmacmoB051
CmoCh01G013880	Cucurbita maxima (Rimu)	cmacmoB041
CmoCh01G013880	Melon (DHL92) v3.5.1	cmomeB423
CmoCh01G013880	Melon (DHL92) v3.5.1	cmomeB439
CmoCh01G013880	Cucurbita pepo (Zucchini)	cmocpeB448
CmoCh01G013880	Cucurbita pepo (Zucchini)	cmocpeB461
CmoCh01G013880	Cucurbita pepo (Zucchini)	cmocpeB469