CsaV3_4G005020 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G005020
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionRNA polymerase-associated RTF1-like protein
Locationchr4 : 3285124 .. 3287106 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGATTTAGAAAATTTACTTCTTGAAGCTGCTGGAAGAACTAATGCAGCAGGGAGAAATAGACACTCTCATCCACCATCGCGAAGGCAACGTGAAGGTTCATATTCTGATGCTGGAAGTGACTCTAGGGATGATGACTCAGATGATGATCGTGGTTATGCAAGCAGGAAGCCCTCTGGATCTCAGGTTCCTCTGAAGAAAAGGTTAGATCCTACTGAAAGGGATGATGATGGAGGCAGCCAAGAGGAAGGGGAAGACGAAGATGTTGGTTCAGAACGTGAGGGTGACAGCAGTGATGAATCTGATGTTGGGGATGATCTTTACAAAGATGACGATGATAGGCGCAAGCTGGCTGGTATGTCTGAACTTCAAAGAGAGATGATTCTGTCAGACAGAGCATCTAAGAAGAACGATAAGCATTTATATGAAAGTTTGAGAGCTAAAATGGATAAAGGGAAGAGTGCCCCATCTCGGAAAGAGACTCCACCTCTCCCATCATCTCGTATTAGATCGTCGGCCAGATCTGCTGATAGAGCAGCTGCAAAAGATGATGCCTTAAATGAATTGCGTGCAAAAAGGTTGAAGCAGCAGGACCCAGAGGCTCATCGCAAGCTGAGAGATGCATCTAGAGGAAATGCAAATAGTCGACGGTTCTCACCAACAAAACGAAAGCCCTTCACTGCTCCTAGTTTGAGTAGCTCAAGCCAAAGTGAAAGTGAAAGTAGGTTTCAAAGTGATGATGAAGGATCTACAGGAGATGGTGGAATGATTGACAGTGATGATGAGAGATCCATACCTGGGTCAGATGGGCCAACATTTGAAGATATCAAGGAAGTTACTATTCGTAGATCAAAGCTTGCAAAATGGTTAATGGAGCCATTCTTTGAGGAGTTGATAGTTGGATGCTTTGTGAGAGTTGGAATTGGGAGATCAAGATCTGGGCCTATCTATAGGCTCTGCTTGGTGCGCAATGTTGATGCAACAGAACCTGACCGTCAGTATAAACTAGAGAACAAAATCACACATAAATATCTTAATGTTATTTGGGGAAATGAAGCTTCTGCCGCCAGGTGGCAGATGGCCATGGTTTCAGACTCTGCTCCACTCGAGGATGAATATAAACAGTGGGTTAAAGAGGTAGAGCGAACTGGCGGTCGGATGCTGAGCAAGCAGGATATATTGGAAAAGAAGGAAGCTATACAGAAAGTCAACAACTTTGTCTACTCAGCAGCCACAGTGAAGCAGATGTTGCAGGATAAAAAATCTGCCTCAGCAAGACCGTTAAATATTGCAGCTGAGAAGGACCGGTTGAGGAGAGAGATGGACGTAGCAGTAAGCAAGAACGATGAAGCTGAGGTGGAAAGGATCAAAACAAGGCTGCAGCAACTAGAGGCATCCAGGAGGTTGCAGATGAAAGATGCCAAAGCTATTCGGTTAGCTGAGATGAACAGGAAGAATAGGGTGGAAAACTTCAAAAATGCATCAGAACTAAGACCTCTGAAAGATTTGAAAGCTGGAGAGGCTGGTTACGATCCTTTCTCAAGGAGATGGACCAGGTCAAGGAATTATTATGTTTCCAATGCTGGTGAAGCCAATGGAGCTGCTGAAGCAGCTGGAAACAGTGACAATGTAACACCTGCATTGGAGAATACTAGAACTGAAGCTGGTGGTACTTCAGATGCTGGAATGGCAGCTACCGCAGCGGCCTTGGAAGCTGCTGCTGGTGCTGGAAAGTTGGTTGATACTAATGCTCCTGTAGATGGAGGGACGGAGTCAAACTCGCTGCACAACTTCGAGCTGCCTATATCGTTGGCTATGCTTCAGAAATTTGGTGGTGCCCTCGGAGCGCAGGCTGGGTTCTTAGCAAGGAAACAAAGGATAGAAGCCACAGTTGGACGTCAAGTCCCTGAGAATGATGGTAGGCGGCATGCACTGACACTTACTGTTAGCGACTACAAGAGAAGAAGAGGGCTTCTTTGA

mRNA sequence

ATGGCAGATTTAGAAAATTTACTTCTTGAAGCTGCTGGAAGAACTAATGCAGCAGGGAGAAATAGACACTCTCATCCACCATCGCGAAGGCAACGTGAAGGTTCATATTCTGATGCTGGAAGTGACTCTAGGGATGATGACTCAGATGATGATCGTGGTTATGCAAGCAGGAAGCCCTCTGGATCTCAGGTTCCTCTGAAGAAAAGGTTAGATCCTACTGAAAGGGATGATGATGGAGGCAGCCAAGAGGAAGGGGAAGACGAAGATGTTGGTTCAGAACGTGAGGGTGACAGCAGTGATGAATCTGATGTTGGGGATGATCTTTACAAAGATGACGATGATAGGCGCAAGCTGGCTGGTATGTCTGAACTTCAAAGAGAGATGATTCTGTCAGACAGAGCATCTAAGAAGAACGATAAGCATTTATATGAAAGTTTGAGAGCTAAAATGGATAAAGGGAAGAGTGCCCCATCTCGGAAAGAGACTCCACCTCTCCCATCATCTCGTATTAGATCGTCGGCCAGATCTGCTGATAGAGCAGCTGCAAAAGATGATGCCTTAAATGAATTGCGTGCAAAAAGGTTGAAGCAGCAGGACCCAGAGGCTCATCGCAAGCTGAGAGATGCATCTAGAGGAAATGCAAATAGTCGACGGTTCTCACCAACAAAACGAAAGCCCTTCACTGCTCCTAGTTTGAGTAGCTCAAGCCAAAGTGAAAGTGAAAGTAGGTTTCAAAGTGATGATGAAGGATCTACAGGAGATGGTGGAATGATTGACAGTGATGATGAGAGATCCATACCTGGGTCAGATGGGCCAACATTTGAAGATATCAAGGAAGTTACTATTCGTAGATCAAAGCTTGCAAAATGGTTAATGGAGCCATTCTTTGAGGAGTTGATAGTTGGATGCTTTGTGAGAGTTGGAATTGGGAGATCAAGATCTGGGCCTATCTATAGGCTCTGCTTGGTGCGCAATGTTGATGCAACAGAACCTGACCGTCAGTATAAACTAGAGAACAAAATCACACATAAATATCTTAATGTTATTTGGGGAAATGAAGCTTCTGCCGCCAGGTGGCAGATGGCCATGGTTTCAGACTCTGCTCCACTCGAGGATGAATATAAACAGTGGGTTAAAGAGGTAGAGCGAACTGGCGGTCGGATGCTGAGCAAGCAGGATATATTGGAAAAGAAGGAAGCTATACAGAAAGTCAACAACTTTGTCTACTCAGCAGCCACAGTGAAGCAGATGTTGCAGGATAAAAAATCTGCCTCAGCAAGACCGTTAAATATTGCAGCTGAGAAGGACCGGTTGAGGAGAGAGATGGACGTAGCAGTAAGCAAGAACGATGAAGCTGAGGTGGAAAGGATCAAAACAAGGCTGCAGCAACTAGAGGCATCCAGGAGGTTGCAGATGAAAGATGCCAAAGCTATTCGGTTAGCTGAGATGAACAGGAAGAATAGGGTGGAAAACTTCAAAAATGCATCAGAACTAAGACCTCTGAAAGATTTGAAAGCTGGAGAGGCTGGTTACGATCCTTTCTCAAGGAGATGGACCAGGTCAAGGAATTATTATGTTTCCAATGCTGGTGAAGCCAATGGAGCTGCTGAAGCAGCTGGAAACAGTGACAATGTAACACCTGCATTGGAGAATACTAGAACTGAAGCTGGTGGTACTTCAGATGCTGGAATGGCAGCTACCGCAGCGGCCTTGGAAGCTGCTGCTGGTGCTGGAAAGTTGGTTGATACTAATGCTCCTGTAGATGGAGGGACGGAGTCAAACTCGCTGCACAACTTCGAGCTGCCTATATCGTTGGCTATGCTTCAGAAATTTGGTGGTGCCCTCGGAGCGCAGGCTGGGTTCTTAGCAAGGAAACAAAGGATAGAAGCCACAGTTGGACGTCAAGTCCCTGAGAATGATGGTAGGCGGCATGCACTGACACTTACTGTTAGCGACTACAAGAGAAGAAGAGGGCTTCTTTGA

Coding sequence (CDS)

ATGGCAGATTTAGAAAATTTACTTCTTGAAGCTGCTGGAAGAACTAATGCAGCAGGGAGAAATAGACACTCTCATCCACCATCGCGAAGGCAACGTGAAGGTTCATATTCTGATGCTGGAAGTGACTCTAGGGATGATGACTCAGATGATGATCGTGGTTATGCAAGCAGGAAGCCCTCTGGATCTCAGGTTCCTCTGAAGAAAAGGTTAGATCCTACTGAAAGGGATGATGATGGAGGCAGCCAAGAGGAAGGGGAAGACGAAGATGTTGGTTCAGAACGTGAGGGTGACAGCAGTGATGAATCTGATGTTGGGGATGATCTTTACAAAGATGACGATGATAGGCGCAAGCTGGCTGGTATGTCTGAACTTCAAAGAGAGATGATTCTGTCAGACAGAGCATCTAAGAAGAACGATAAGCATTTATATGAAAGTTTGAGAGCTAAAATGGATAAAGGGAAGAGTGCCCCATCTCGGAAAGAGACTCCACCTCTCCCATCATCTCGTATTAGATCGTCGGCCAGATCTGCTGATAGAGCAGCTGCAAAAGATGATGCCTTAAATGAATTGCGTGCAAAAAGGTTGAAGCAGCAGGACCCAGAGGCTCATCGCAAGCTGAGAGATGCATCTAGAGGAAATGCAAATAGTCGACGGTTCTCACCAACAAAACGAAAGCCCTTCACTGCTCCTAGTTTGAGTAGCTCAAGCCAAAGTGAAAGTGAAAGTAGGTTTCAAAGTGATGATGAAGGATCTACAGGAGATGGTGGAATGATTGACAGTGATGATGAGAGATCCATACCTGGGTCAGATGGGCCAACATTTGAAGATATCAAGGAAGTTACTATTCGTAGATCAAAGCTTGCAAAATGGTTAATGGAGCCATTCTTTGAGGAGTTGATAGTTGGATGCTTTGTGAGAGTTGGAATTGGGAGATCAAGATCTGGGCCTATCTATAGGCTCTGCTTGGTGCGCAATGTTGATGCAACAGAACCTGACCGTCAGTATAAACTAGAGAACAAAATCACACATAAATATCTTAATGTTATTTGGGGAAATGAAGCTTCTGCCGCCAGGTGGCAGATGGCCATGGTTTCAGACTCTGCTCCACTCGAGGATGAATATAAACAGTGGGTTAAAGAGGTAGAGCGAACTGGCGGTCGGATGCTGAGCAAGCAGGATATATTGGAAAAGAAGGAAGCTATACAGAAAGTCAACAACTTTGTCTACTCAGCAGCCACAGTGAAGCAGATGTTGCAGGATAAAAAATCTGCCTCAGCAAGACCGTTAAATATTGCAGCTGAGAAGGACCGGTTGAGGAGAGAGATGGACGTAGCAGTAAGCAAGAACGATGAAGCTGAGGTGGAAAGGATCAAAACAAGGCTGCAGCAACTAGAGGCATCCAGGAGGTTGCAGATGAAAGATGCCAAAGCTATTCGGTTAGCTGAGATGAACAGGAAGAATAGGGTGGAAAACTTCAAAAATGCATCAGAACTAAGACCTCTGAAAGATTTGAAAGCTGGAGAGGCTGGTTACGATCCTTTCTCAAGGAGATGGACCAGGTCAAGGAATTATTATGTTTCCAATGCTGGTGAAGCCAATGGAGCTGCTGAAGCAGCTGGAAACAGTGACAATGTAACACCTGCATTGGAGAATACTAGAACTGAAGCTGGTGGTACTTCAGATGCTGGAATGGCAGCTACCGCAGCGGCCTTGGAAGCTGCTGCTGGTGCTGGAAAGTTGGTTGATACTAATGCTCCTGTAGATGGAGGGACGGAGTCAAACTCGCTGCACAACTTCGAGCTGCCTATATCGTTGGCTATGCTTCAGAAATTTGGTGGTGCCCTCGGAGCGCAGGCTGGGTTCTTAGCAAGGAAACAAAGGATAGAAGCCACAGTTGGACGTCAAGTCCCTGAGAATGATGGTAGGCGGCATGCACTGACACTTACTGTTAGCGACTACAAGAGAAGAAGAGGGCTTCTTTGA

Protein sequence

MADLENLLLEAAGRTNAAGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDDRGYASRKPSGSQVPLKKRLDPTERDDDGGSQEEGEDEDVGSEREGDSSDESDVGDDLYKDDDDRRKLAGMSELQREMILSDRASKKNDKHLYESLRAKMDKGKSAPSRKETPPLPSSRIRSSARSADRAAAKDDALNELRAKRLKQQDPEAHRKLRDASRGNANSRRFSPTKRKPFTAPSLSSSSQSESESRFQSDDEGSTGDGGMIDSDDERSIPGSDGPTFEDIKEVTIRRSKLAKWLMEPFFEELIVGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNEASAARWQMAMVSDSAPLEDEYKQWVKEVERTGGRMLSKQDILEKKEAIQKVNNFVYSAATVKQMLQDKKSASARPLNIAAEKDRLRREMDVAVSKNDEAEVERIKTRLQQLEASRRLQMKDAKAIRLAEMNRKNRVENFKNASELRPLKDLKAGEAGYDPFSRRWTRSRNYYVSNAGEANGAAEAAGNSDNVTPALENTRTEAGGTSDAGMAATAAALEAAAGAGKLVDTNAPVDGGTESNSLHNFELPISLAMLQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL
Homology
[Close]
BLAST of CsaV3_4G005020 vs. NCBI nr
Match: XP_004149150.1 (PREDICTED: RNA polymerase-associated protein RTF1 homolog [Cucumis sativus] >XP_011653135.1 PREDICTED: RNA polymerase-associated protein RTF1 homolog [Cucumis sativus] >KGN53247.1 hypothetical protein Csa_4G038650 [Cucumis sativus])

HSP 1 Score: 1133.6 bits (2931), Expect = 0.0e+00
Identity = 660/660 (100.00%), Postives = 660/660 (100.00%), Query Frame = 0 

Query: 1   MADLENLLLEAAGRTNAAGRNRHSHPPSRRQREGSYSDAGSXXXXXXXXXXRGYASRKPS 60
           MADLENLLLEAAGRTNAAGRNRHSHPPSRRQREGSYSDAGSXXXXXXXXXXRGYASRKPS
Sbjct: 1   MADLENLLLEAAGRTNAAGRNRHSHPPSRRQREGSYSDAGSXXXXXXXXXXRGYASRKPS 60

Query: 61  GSQVPLKKRLDPTERDDDGGSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRRKLAG 120
           GSQVPLKKRLDPTERDDDGGSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRRKLAG
Sbjct: 61  GSQVPLKKRLDPTERDDDGGSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRRKLAG 120

Query: 121 MSELQREMILSDRASKKNDKHLYESLRAKMDKGKSAPSRKETPPLPSSRIRSSARSADRA 180
           MSELQREMILSDRASKKNDKHLYESLRAKMDKGKSAPSRKETPPLPSSRIRSSARSADRA
Sbjct: 121 MSELQREMILSDRASKKNDKHLYESLRAKMDKGKSAPSRKETPPLPSSRIRSSARSADRA 180

Query: 181 AAKDDALNELRAKRLKQQDPEAHRKLRDASRGNANSRRFSPTKRKPFTAPSLSSXXXXXX 240
           AAKDDALNELRAKRLKQQDPEAHRKLRDASRGNANSRRFSPTKRKPFTAPSLSSXXXXXX
Sbjct: 181 AAKDDALNELRAKRLKQQDPEAHRKLRDASRGNANSRRFSPTKRKPFTAPSLSSXXXXXX 240

Query: 241 XXXFQSDDEGSTGDGGMIDSDDERSIPGSDGPTFEDIKEVTIRRSKLAKWLMEPFFEELI 300
           XXXFQSDDEGSTGDGGMIDSDDERSIPGSDGPTFEDIKEVTIRRSKLAKWLMEPFFEELI
Sbjct: 241 XXXFQSDDEGSTGDGGMIDSDDERSIPGSDGPTFEDIKEVTIRRSKLAKWLMEPFFEELI 300

Query: 301 VGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNEASAARWQ 360
           VGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNEASAARWQ
Sbjct: 301 VGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNEASAARWQ 360

Query: 361 MAMVSDSAPLEDEYKQWVKEVERTGGRMLSKQDILEKKEAIQKVNNFVYSAATVKQMLQD 420
           MAMVSDSAPLEDEYKQWVKEVERTGGRMLSKQDILEKKEAIQKVNNFVYSAATVKQMLQD
Sbjct: 361 MAMVSDSAPLEDEYKQWVKEVERTGGRMLSKQDILEKKEAIQKVNNFVYSAATVKQMLQD 420

Query: 421 KKSASARPLNIAAEKDRLRREMDVAVSKNDEAEVERIKTRLQQLEASRRLQMKDAKAIRL 480
           KKSASARPLNIAAEKDRLRREMDVAVSKNDEAEVERIKTRLQQLEASRRLQMKDAKAIRL
Sbjct: 421 KKSASARPLNIAAEKDRLRREMDVAVSKNDEAEVERIKTRLQQLEASRRLQMKDAKAIRL 480

Query: 481 AEMNRKNRVENFKNASELRPLKDLKAGEAGYDPFSRRWTRSRNYYVSNAGEANGAAEAAG 540
           AEMNRKNRVENFKNASELRPLKDLKAGEAGYDPFSRRWTRSRNYYVSNAGEANGAAEAAG
Sbjct: 481 AEMNRKNRVENFKNASELRPLKDLKAGEAGYDPFSRRWTRSRNYYVSNAGEANGAAEAAG 540

Query: 541 NSDNVTPALENTRTEAGGTSDAGMAATAAALEAAAGAGKLVDTNAPVDGGTESNSLHNFE 600
           NSDNVTPALENTRTEAGGTSDAGMAATAAALEAAAGAGKLVDTNAPVDGGTESNSLHNFE
Sbjct: 541 NSDNVTPALENTRTEAGGTSDAGMAATAAALEAAAGAGKLVDTNAPVDGGTESNSLHNFE 600

Query: 601 LPISLAMLQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL 660
           LPISLAMLQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL
Sbjct: 601 LPISLAMLQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL 660

[Close]
BLAST of CsaV3_4G005020 vs. NCBI nr
Match: XP_008453742.1 (PREDICTED: protein RTF1 homolog [Cucumis melo] >XP_008453743.1 PREDICTED: protein RTF1 homolog [Cucumis melo])

HSP 1 Score: 1049.3 bits (2712), Expect = 5.6e-303
Identity = 621/660 (94.09%), Postives = 629/660 (95.30%), Query Frame = 0 

Query: 1   MADLENLLLEAAGRTNAAGRNRHSHPPSRRQREGSYSDAGSXXXXXXXXXXRGYASRKPS 60
           MADLENLLLEAAGRTN                         XXXXXXXXXX GYASRKPS
Sbjct: 1   MADLENLLLEAAGRTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYASRKPS 60

Query: 61  GSQVPLKKRLDPTERDDDGGSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRRKLAG 120
           GSQVPLKKRLDPTERDDDGGS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRRKLAG
Sbjct: 61  GSQVPLKKRLDPTERDDDGGSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRRKLAG 120

Query: 121 MSELQREMILSDRASKKNDKHLYESLRAKMDKGKSAPSRKETPPLPSSRIRSSARSADRA 180
           MSELQREMILSDRASKKNDKHLYESLRAKMDKGK+APSRKETPPLPSSRIRSSARSADRA
Sbjct: 121 MSELQREMILSDRASKKNDKHLYESLRAKMDKGKTAPSRKETPPLPSSRIRSSARSADRA 180

Query: 181 AAKDDALNELRAKRLKQQDPEAHRKLRDASRGNANSRRFSPTKRKPFTAPSLSSXXXXXX 240
           AAKDDALNELRAKRLKQQDPEAHRKLRDASRGN+N+RRFSPTKRKPFTAPSLSSXXXXXX
Sbjct: 181 AAKDDALNELRAKRLKQQDPEAHRKLRDASRGNSNNRRFSPTKRKPFTAPSLSSXXXXXX 240

Query: 241 XXXFQSDDEGSTGDGGMIDSDDERSIPGSDGPTFEDIKEVTIRRSKLAKWLMEPFFEELI 300
           XXXFQSDDEGSTGDGGMIDSDDERS+PGSDGPTFEDIKE+TIRRSKLAKWLMEPFFEELI
Sbjct: 241 XXXFQSDDEGSTGDGGMIDSDDERSMPGSDGPTFEDIKEITIRRSKLAKWLMEPFFEELI 300

Query: 301 VGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNEASAARWQ 360
           VGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNE SAARWQ
Sbjct: 301 VGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNENSAARWQ 360

Query: 361 MAMVSDSAPLEDEYKQWVKEVERTGGRMLSKQDILEKKEAIQKVNNFVYSAATVKQMLQD 420
           MAMVSDSAPLEDEYKQWVKEVERTGGRMLSKQD+LEKK+AIQKVNNFVYSAATVKQMLQD
Sbjct: 361 MAMVSDSAPLEDEYKQWVKEVERTGGRMLSKQDVLEKKDAIQKVNNFVYSAATVKQMLQD 420

Query: 421 KKSASARPLNIAAEKDRLRREMDVAVSKNDEAEVERIKTRLQQLEASRRLQMKDAKAIRL 480
           KKSASARPLNIAAEKDRLRREMDVAVSKNDEAEVERIK RLQQLEASRRLQMKDAKAIRL
Sbjct: 421 KKSASARPLNIAAEKDRLRREMDVAVSKNDEAEVERIKGRLQQLEASRRLQMKDAKAIRL 480

Query: 481 AEMNRKNRVENFKNASELRPLKDLKAGEAGYDPFSRRWTRSRNYYVSNAGEANGAAEAAG 540
           AEMNRKNRVENFKNASELRPLKDLKAGEAGYDPFSRRWTRSRNYYVSNAGEANGAAEAAG
Sbjct: 481 AEMNRKNRVENFKNASELRPLKDLKAGEAGYDPFSRRWTRSRNYYVSNAGEANGAAEAAG 540

Query: 541 NSDNVTPALENTRTEAGGTSDAGMAATAAALEAAAGAGKLVDTNAPVDGGTESNSLHNFE 600
           NSD VTPALE+TRT AGGTSDAGMAATAAALEAAAGAGKLVDTNAPVDGGTESNSLHNFE
Sbjct: 541 NSDTVTPALESTRTGAGGTSDAGMAATAAALEAAAGAGKLVDTNAPVDGGTESNSLHNFE 600

Query: 601 LPISLAMLQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL 660
           LPISLAMLQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL
Sbjct: 601 LPISLAMLQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL 660

[Close]
BLAST of CsaV3_4G005020 vs. NCBI nr
Match: XP_023552862.1 (protein RTF1 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 1023.8 bits (2646), Expect = 2.5e-295
Identity = 577/660 (87.42%), Postives = 603/660 (91.36%), Query Frame = 0 

Query: 1   MADLENLLLEAAGRTNAAGRNRHSHPPSRRQREGSYSDAGSXXXXXXXXXXRGYASRKPS 60
           MADLENLLLEAAGRT ++GRNRHSHPPSRRQREGSYSDAGS          RGYASRKPS
Sbjct: 1   MADLENLLLEAAGRTKSSGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDERGYASRKPS 60

Query: 61  GSQVPLKKRLDPTERDDDGGSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRRKLAG 120
           GSQVPLKKRLDP ERDDD GS    XXXXXXXXXXXXXXXXXXX         DRRKLAG
Sbjct: 61  GSQVPLKKRLDPNERDDDVGSPEEGXXXXXXXXXXXXXXXXXXXGDDLYKDDDDRRKLAG 120

Query: 121 MSELQREMILSDRASKKNDKHLYESLRAKMDKGKSAPSRKETPPLPSSRIRSSARSADRA 180
           MSELQREMILSDRASKKNDKHLYESLR+KMDKGK+APSRKE PPLPSSRIRSSARSADRA
Sbjct: 121 MSELQREMILSDRASKKNDKHLYESLRSKMDKGKAAPSRKENPPLPSSRIRSSARSADRA 180

Query: 181 AAKDDALNELRAKRLKQQDPEAHRKLRDASRGNANSRRFSPTKRKPFTAPSLSSXXXXXX 240
           AAKDDALNELRAKRLKQQDPEAHRKLRD SRGNAN+RRFSPTKRKPFTAPSLSSXXXXXX
Sbjct: 181 AAKDDALNELRAKRLKQQDPEAHRKLRDTSRGNANNRRFSPTKRKPFTAPSLSSXXXXXX 240

Query: 241 XXXFQSDDEGSTGDGGMIDSDDERSIPGSDGPTFEDIKEVTIRRSKLAKWLMEPFFEELI 300
           XXXFQSDDEGSTGDGGMIDSDDER++PGS+GPTF+DIKE+TIRRSKLAKWLMEPFFEELI
Sbjct: 241 XXXFQSDDEGSTGDGGMIDSDDERTMPGSNGPTFDDIKEITIRRSKLAKWLMEPFFEELI 300

Query: 301 VGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNEASAARWQ 360
           VGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNE+SAARWQ
Sbjct: 301 VGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNESSAARWQ 360

Query: 361 MAMVSDSAPLEDEYKQWVKEVERTGGRMLSKQDILEKKEAIQKVNNFVYSAATVKQMLQD 420
           MAMVSDS PLEDEYKQWVKEVERTGGRMLSKQDILEKKEAIQK NNFVYSAATVKQMLQ+
Sbjct: 361 MAMVSDSGPLEDEYKQWVKEVERTGGRMLSKQDILEKKEAIQKANNFVYSAATVKQMLQE 420

Query: 421 KKSASARPLNIAAEKDRLRREMDVAVSKNDEAEVERIKTRLQQLEASRRLQMKDAKAIRL 480
           KKSAS+RPLNIAAEKDRLR +MDVA+SKN+EAEVERIK +L+QL+ASRR QMKDAKAIRL
Sbjct: 421 KKSASSRPLNIAAEKDRLRNQMDVALSKNNEAEVERIKAKLRQLDASRRSQMKDAKAIRL 480

Query: 481 AEMNRKNRVENFKNASELRPLKDLKAGEAGYDPFSRRWTRSRNYYVSNAGEANGAAEAAG 540
           +EMNRKNRVENFKNASELRP KDLKAGEAGYDPFSRRWTRSRNYYVSNAG+ +GAAEAAG
Sbjct: 481 SEMNRKNRVENFKNASELRPTKDLKAGEAGYDPFSRRWTRSRNYYVSNAGQVDGAAEAAG 540

Query: 541 NSDNVTPALENTRTEAGGTSDAGMAATAAALEAAAGAGKLVDTNAPVDGGTESNSLHNFE 600
           N+DN+TPALE+T T   G                AGAGKLVDTNAPVDGGTESN LHNFE
Sbjct: 541 NNDNITPALESTGT---GXXXXXXXXXXXXXXXXAGAGKLVDTNAPVDGGTESNLLHNFE 600

Query: 601 LPISLAMLQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL 660
           LPISL +LQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL
Sbjct: 601 LPISLTVLQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL 657

[Close]
BLAST of CsaV3_4G005020 vs. NCBI nr
Match: XP_022136687.1 (protein RTF1 homolog [Momordica charantia])

HSP 1 Score: 1022.7 bits (2643), Expect = 5.6e-295
Identity = 602/660 (91.21%), Postives = 623/660 (94.39%), Query Frame = 0 

Query: 1   MADLENLLLEAAGRTNAAGRNRHSHPPSRRQREGSYSDAGSXXXXXXXXXXRGYASRKPS 60
           MADLENLLLEAAGRTNA GRNRHSHPPSRRQREGSYSDAGSXXXXXXXXXXRGYASRKPS
Sbjct: 5   MADLENLLLEAAGRTNATGRNRHSHPPSRRQREGSYSDAGSXXXXXXXXXXRGYASRKPS 64

Query: 61  GSQVPLKKRLDPTERDDDGGSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRRKLAG 120
           GSQVPLKKRLDPTERDDD G  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRRKLAG
Sbjct: 65  GSQVPLKKRLDPTERDDDVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRRKLAG 124

Query: 121 MSELQREMILSDRASKKNDKHLYESLRAKMDKGKSAPSRKETPPLPSSRIRSSARSADRA 180
           MSELQREMILSDRASKKNDKHLYESLRAKMDKGK+APSRKETPPLPSSRIRSSARSADRA
Sbjct: 125 MSELQREMILSDRASKKNDKHLYESLRAKMDKGKTAPSRKETPPLPSSRIRSSARSADRA 184

Query: 181 AAKDDALNELRAKRLKQQDPEAHRKLRDASRGNANSRRFSPTKRKPFTAPSLSSXXXXXX 240
           AAKDDALNELRAKRLKQQDPEAHRKLRDASRGNAN+RRFSP KRK FTAPSL  XXXXXX
Sbjct: 185 AAKDDALNELRAKRLKQQDPEAHRKLRDASRGNANNRRFSPMKRKSFTAPSLXXXXXXXX 244

Query: 241 XXXFQSDDEGSTGDGGMIDSDDERSIPGSDGPTFEDIKEVTIRRSKLAKWLMEPFFEELI 300
           XXX        TGDGGMIDSDD+RS+PGSDGPTFEDIKE+TIRRSKL KW MEPFFEELI
Sbjct: 245 XXXXXXXXXXXTGDGGMIDSDDDRSMPGSDGPTFEDIKEITIRRSKLGKWFMEPFFEELI 304

Query: 301 VGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNEASAARWQ 360
           VGCFVRVGIGRSRSG IYRLCLVRNVDATEPDRQYKLENK THKYLNVIWGNE+SAARWQ
Sbjct: 305 VGCFVRVGIGRSRSGSIYRLCLVRNVDATEPDRQYKLENKTTHKYLNVIWGNESSAARWQ 364

Query: 361 MAMVSDSAPLEDEYKQWVKEVERTGGRMLSKQDILEKKEAIQKVNNFVYSAATVKQMLQD 420
           MAMVSDS P EDEYKQWVKEVE+TGGRMLSKQDILEKKEAIQKVNNFVYSAATVKQMLQ+
Sbjct: 365 MAMVSDSPPHEDEYKQWVKEVEQTGGRMLSKQDILEKKEAIQKVNNFVYSAATVKQMLQE 424

Query: 421 KKSASARPLNIAAEKDRLRREMDVAVSKNDEAEVERIKTRLQQLEASRRLQMKDAKAIRL 480
           KKSAS+RPLNIAAEKDRLRREMDVA+SKND+AEVERI  RLQQLEASRRLQMKDAKAI+L
Sbjct: 425 KKSASSRPLNIAAEKDRLRREMDVALSKNDDAEVERINARLQQLEASRRLQMKDAKAIKL 484

Query: 481 AEMNRKNRVENFKNASELRPLKDLKAGEAGYDPFSRRWTRSRNYYVSNAGEANGAAEAAG 540
           AEMNRKNRVENFKNAS LRP+KDLKAGEAGYDPFSRRWTRSRNYYVSNAGEANGAAE  G
Sbjct: 485 AEMNRKNRVENFKNASGLRPVKDLKAGEAGYDPFSRRWTRSRNYYVSNAGEANGAAETGG 544

Query: 541 NSDNVTPALENTRTEAGGTSDAGMAATAAALEAAAGAGKLVDTNAPVDGGTESNSLHNFE 600
           N+DN+ PA E+ RT +G  ++AGMAATAAAL AAAGAGKLVDT+APVDGGTESN LHNFE
Sbjct: 545 NNDNLMPASESNRTGSGVIAEAGMAATAAALVAAAGAGKLVDTSAPVDGGTESNLLHNFE 604

Query: 601 LPISLAMLQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL 660
           LPISLA+LQKFGG  GAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL
Sbjct: 605 LPISLAVLQKFGGPQGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL 664

[Close]
BLAST of CsaV3_4G005020 vs. NCBI nr
Match: XP_022929443.1 (protein RTF1 homolog [Cucurbita moschata] >XP_022929444.1 protein RTF1 homolog [Cucurbita moschata] >XP_022929445.1 protein RTF1 homolog [Cucurbita moschata])

HSP 1 Score: 1011.1 bits (2613), Expect = 1.7e-291
Identity = 573/660 (86.82%), Postives = 597/660 (90.45%), Query Frame = 0 

Query: 1   MADLENLLLEAAGRTNAAGRNRHSHPPSRRQREGSYSDAGSXXXXXXXXXXRGYASRKPS 60
           MADLENLLLEAAGRT A+GRNRHSHPPSRRQREGSYSDAGS          RGYASRKPS
Sbjct: 1   MADLENLLLEAAGRTKASGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDERGYASRKPS 60

Query: 61  GSQVPLKKRLDPTERDDDGGSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRRKLAG 120
           GSQVPLKKRLDP ERDDD GS    XXXXXXXXXXXXXXXXXXX         DRRKLAG
Sbjct: 61  GSQVPLKKRLDPNERDDDVGSPEEGXXXXXXXXXXXXXXXXXXXGDDLYKDDDDRRKLAG 120

Query: 121 MSELQREMILSDRASKKNDKHLYESLRAKMDKGKSAPSRKETPPLPSSRIRSSARSADRA 180
           MSELQREMILSDRASKKNDKHLYESLR+KMDKGK+APSRKE PPLPSSRIRSSARSADRA
Sbjct: 121 MSELQREMILSDRASKKNDKHLYESLRSKMDKGKAAPSRKENPPLPSSRIRSSARSADRA 180

Query: 181 AAKDDALNELRAKRLKQQDPEAHRKLRDASRGNANSRRFSPTKRKPFTAPSLSSXXXXXX 240
           AAKDDALNELRAKRLKQQDPEAHRKLRD SRGNAN+RRFSPTKRKPFTAPSLSSXXXXXX
Sbjct: 181 AAKDDALNELRAKRLKQQDPEAHRKLRDTSRGNANNRRFSPTKRKPFTAPSLSSXXXXXX 240

Query: 241 XXXFQSDDEGSTGDGGMIDSDDERSIPGSDGPTFEDIKEVTIRRSKLAKWLMEPFFEELI 300
           XXXFQSDDEGSTGDGGMIDSDDER++PGS+GPTF+DIKE+TIRRSKLAKWLMEPFFEELI
Sbjct: 241 XXXFQSDDEGSTGDGGMIDSDDERTMPGSNGPTFDDIKEITIRRSKLAKWLMEPFFEELI 300

Query: 301 VGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNEASAARWQ 360
           VGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNE+SAARWQ
Sbjct: 301 VGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNESSAARWQ 360

Query: 361 MAMVSDSAPLEDEYKQWVKEVERTGGRMLSKQDILEKKEAIQKVNNFVYSAATVKQMLQD 420
           MAMVSDS PLEDEYKQWVKEVERTGGRMLSKQDILEKKEAIQK NNFVYSAATVKQMLQ+
Sbjct: 361 MAMVSDSGPLEDEYKQWVKEVERTGGRMLSKQDILEKKEAIQKANNFVYSAATVKQMLQE 420

Query: 421 KKSASARPLNIAAEKDRLRREMDVAVSKNDEAEVERIKTRLQQLEASRRLQMKDAKAIRL 480
           KKSAS+RPLNIAAEKDRLR +MDVA+SKN+EAEVERIK +L+QL+ASRR QMKDAKAIRL
Sbjct: 421 KKSASSRPLNIAAEKDRLRNQMDVALSKNNEAEVERIKAKLRQLDASRRSQMKDAKAIRL 480

Query: 481 AEMNRKNRVENFKNASELRPLKDLKAGEAGYDPFSRRWTRSRNYYVSNAGEANGAAEAAG 540
           +EMNRKNRVENFKNASELRP KDLKAGEAGYDPFSRRWTRSRNYYVSNAG+ +GAAEAAG
Sbjct: 481 SEMNRKNRVENFKNASELRPTKDLKAGEAGYDPFSRRWTRSRNYYVSNAGQVDGAAEAAG 540

Query: 541 NSDNVTPALENTRTEAGGTSDAGMAATAAALEAAAGAGKLVDTNAPVDGGTESNSLHNFE 600
           NSDN+TPA   + T                      AGKLVDTNAPVDGGTESN LHNFE
Sbjct: 541 NSDNITPA---SVTTGXXXXXXXXXXXXXXXXXXXXAGKLVDTNAPVDGGTESNLLHNFE 600

Query: 601 LPISLAMLQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL 660
           LPISL +LQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL
Sbjct: 601 LPISLTVLQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL 657

[Close]
BLAST of CsaV3_4G005020 vs. TAIR10
Match: AT1G61040.1 (plus-3 domain-containing protein)

HSP 1 Score: 699.5 bits (1804), Expect = 2.0e-201
Identity = 441/663 (66.52%), Postives = 504/663 (76.02%), Query Frame = 0 

Query: 1   MADLENLLLEAAGRTNAAGRNRHSHPPSRRQREGSYSDAGSXXXXXXXXXXRGYASRKPS 60
           M DLENLLLEAAGRTN+AGR+R  HPPS R+REGSYSD GS          RGYASRKPS
Sbjct: 1   MGDLENLLLEAAGRTNSAGRSR--HPPSSRRREGSYSD-GSSDSRDDSDEDRGYASRKPS 60

Query: 61  GSQVPLKKRLDPTERDDDGGSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRRKLAG 120
           GSQVPLKKRL+  ER +D    XXXXXXXXXXXXXXXXXXXXXX         DR+KLAG
Sbjct: 61  GSQVPLKKRLE-AER-EDRXXXXXXXXXXXXXXXXXXXXXXXXXGDDLYKNEEDRQKLAG 120

Query: 121 MSELQREMILSDRASKKNDKHLYESLRAKMDKGKSAPSRKETPPLPSSR-IRSSARSADR 180
           M+E QREMILS+RA KK DK+  E LR+K +  K+  S+KET PLP+SR +RSSARSADR
Sbjct: 121 MTEFQREMILSERADKKGDKNFTEKLRSKRESEKTPVSKKETQPLPASRGVRSSARSADR 180

Query: 181 AAAKDDALNELRAKRLKQQDPEAHRKLRDASRGNANSRRFSPTKRKPFTAPSLSSXXXXX 240
           AAAKDDALNELRAKR+KQQDP A RKLRDAS+G + SR FS TKRKP    S   XXXXX
Sbjct: 181 AAAKDDALNELRAKRMKQQDPAALRKLRDASKGGSGSRDFSSTKRKPLA--SSXXXXXXX 240

Query: 241 XXXXFQSDDEGSTGDGGMIDSDDERSIPGSDGPTFEDIKEVTIRRSKLAKWLMEPFFEEL 300
           XXXX          +GGM+DSDD+R    SD PTFED+KEVTIRRSKLAKWLMEPFFEEL
Sbjct: 241 XXXXXXXXXXXXXXNGGMLDSDDDR----SDVPTFEDVKEVTIRRSKLAKWLMEPFFEEL 300

Query: 301 IVGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNEASAARW 360
           IVGCFVRVGIGRS+SGPIYRLC V+NVDAT+PD+ YKLENK THKYLNV+WGNE SAARW
Sbjct: 301 IVGCFVRVGIGRSKSGPIYRLCWVKNVDATDPDKTYKLENKTTHKYLNVVWGNETSAARW 360

Query: 361 QMAMVSDSAPLEDEYKQWVKEVERTGGRMLSKQDILEKKEAIQKVNNFVYSAATVKQMLQ 420
           QMAM+SD  PLE+EY+QW++EVERT GRM +KQDI EKKEAIQ+ N+FVYSA TVKQMLQ
Sbjct: 361 QMAMISDGHPLEEEYRQWIREVERTNGRMPTKQDISEKKEAIQRTNSFVYSAETVKQMLQ 420

Query: 421 DKKSASARPLNIAAEKDRLRREMDVAVSKNDEAEVERIKTRLQQLEASRRLQMKDAKAIR 480
           +KKSAS RP+N+AAEKDRLR+E+++A SKNDEA VERIK++++QL+ASR  +  D KA++
Sbjct: 421 EKKSASVRPMNVAAEKDRLRKELEIAQSKNDEAGVERIKSKIKQLDASRNKKGVDKKALK 480

Query: 481 LAEMNRKNRVENFKNASELRPL-KDLKAGEAGYDPFSRRWTRSRNYY-VSNAGEANGAAE 540
           LAEMN+KNR ENFKNASE++ +   LKAGEAGYDPFSRRWTRS NYY   N G+     E
Sbjct: 481 LAEMNKKNRAENFKNASEVKSITASLKAGEAGYDPFSRRWTRSSNYYNGKNKGKDGEENE 540

Query: 541 AAGNSDNVTPALENTRTEAGGTSDAGMAATAAALEAAAGAGKLVDTNAPVDGGTESNSLH 600
           AA     V  A+E                           GKL+DT AP+  G E N LH
Sbjct: 541 AA-----VAAAVET----XXXXXXXXXXXXXXXXXXXXXXGKLIDTRAPIGQGAEHNQLH 600

Query: 601 NFELPISLAMLQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYKRRR 660
           NFEL +SL  LQK+GG  G Q  F+ARKQ  EATVG +V ENDG+RH LTLTVSDYKRRR
Sbjct: 601 NFELSLSLTALQKYGGPQGVQKAFMARKQLTEATVGCRVAENDGKRHGLTLTVSDYKRRR 643

[Close]
BLAST of CsaV3_4G005020 vs. Swiss-Prot
Match: sp|Q9C950|VIP5_ARATH (Protein RTF1 homolog OS=Arabidopsis thaliana OX=3702 GN=VIP5 PE=1 SV=1)

HSP 1 Score: 699.5 bits (1804), Expect = 3.5e-200
Identity = 441/663 (66.52%), Postives = 504/663 (76.02%), Query Frame = 0 

Query: 1   MADLENLLLEAAGRTNAAGRNRHSHPPSRRQREGSYSDAGSXXXXXXXXXXRGYASRKPS 60
           M DLENLLLEAAGRTN+AGR+R  HPPS R+REGSYSD GS          RGYASRKPS
Sbjct: 1   MGDLENLLLEAAGRTNSAGRSR--HPPSSRRREGSYSD-GSSDSRDDSDEDRGYASRKPS 60

Query: 61  GSQVPLKKRLDPTERDDDGGSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRRKLAG 120
           GSQVPLKKRL+  ER +D    XXXXXXXXXXXXXXXXXXXXXX         DR+KLAG
Sbjct: 61  GSQVPLKKRLE-AER-EDRXXXXXXXXXXXXXXXXXXXXXXXXXGDDLYKNEEDRQKLAG 120

Query: 121 MSELQREMILSDRASKKNDKHLYESLRAKMDKGKSAPSRKETPPLPSSR-IRSSARSADR 180
           M+E QREMILS+RA KK DK+  E LR+K +  K+  S+KET PLP+SR +RSSARSADR
Sbjct: 121 MTEFQREMILSERADKKGDKNFTEKLRSKRESEKTPVSKKETQPLPASRGVRSSARSADR 180

Query: 181 AAAKDDALNELRAKRLKQQDPEAHRKLRDASRGNANSRRFSPTKRKPFTAPSLSSXXXXX 240
           AAAKDDALNELRAKR+KQQDP A RKLRDAS+G + SR FS TKRKP    S   XXXXX
Sbjct: 181 AAAKDDALNELRAKRMKQQDPAALRKLRDASKGGSGSRDFSSTKRKPLA--SSXXXXXXX 240

Query: 241 XXXXFQSDDEGSTGDGGMIDSDDERSIPGSDGPTFEDIKEVTIRRSKLAKWLMEPFFEEL 300
           XXXX          +GGM+DSDD+R    SD PTFED+KEVTIRRSKLAKWLMEPFFEEL
Sbjct: 241 XXXXXXXXXXXXXXNGGMLDSDDDR----SDVPTFEDVKEVTIRRSKLAKWLMEPFFEEL 300

Query: 301 IVGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNEASAARW 360
           IVGCFVRVGIGRS+SGPIYRLC V+NVDAT+PD+ YKLENK THKYLNV+WGNE SAARW
Sbjct: 301 IVGCFVRVGIGRSKSGPIYRLCWVKNVDATDPDKTYKLENKTTHKYLNVVWGNETSAARW 360

Query: 361 QMAMVSDSAPLEDEYKQWVKEVERTGGRMLSKQDILEKKEAIQKVNNFVYSAATVKQMLQ 420
           QMAM+SD  PLE+EY+QW++EVERT GRM +KQDI EKKEAIQ+ N+FVYSA TVKQMLQ
Sbjct: 361 QMAMISDGHPLEEEYRQWIREVERTNGRMPTKQDISEKKEAIQRTNSFVYSAETVKQMLQ 420

Query: 421 DKKSASARPLNIAAEKDRLRREMDVAVSKNDEAEVERIKTRLQQLEASRRLQMKDAKAIR 480
           +KKSAS RP+N+AAEKDRLR+E+++A SKNDEA VERIK++++QL+ASR  +  D KA++
Sbjct: 421 EKKSASVRPMNVAAEKDRLRKELEIAQSKNDEAGVERIKSKIKQLDASRNKKGVDKKALK 480

Query: 481 LAEMNRKNRVENFKNASELRPL-KDLKAGEAGYDPFSRRWTRSRNYY-VSNAGEANGAAE 540
           LAEMN+KNR ENFKNASE++ +   LKAGEAGYDPFSRRWTRS NYY   N G+     E
Sbjct: 481 LAEMNKKNRAENFKNASEVKSITASLKAGEAGYDPFSRRWTRSSNYYNGKNKGKDGEENE 540

Query: 541 AAGNSDNVTPALENTRTEAGGTSDAGMAATAAALEAAAGAGKLVDTNAPVDGGTESNSLH 600
           AA     V  A+E                           GKL+DT AP+  G E N LH
Sbjct: 541 AA-----VAAAVET----XXXXXXXXXXXXXXXXXXXXXXGKLIDTRAPIGQGAEHNQLH 600

Query: 601 NFELPISLAMLQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYKRRR 660
           NFEL +SL  LQK+GG  G Q  F+ARKQ  EATVG +V ENDG+RH LTLTVSDYKRRR
Sbjct: 601 NFELSLSLTALQKYGGPQGVQKAFMARKQLTEATVGCRVAENDGKRHGLTLTVSDYKRRR 643

[Close]
BLAST of CsaV3_4G005020 vs. Swiss-Prot
Match: sp|A2AQ19|RTF1_MOUSE (RNA polymerase-associated protein RTF1 homolog OS=Mus musculus OX=10090 GN=Rtf1 PE=1 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 7.8e-22
Identity = 109/393 (27.74%), Postives = 185/393 (47.07%), Query Frame = 0 

Query: 275 EDIKEVTIRRSKLAKWLMEPFFEELIVGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQ 334
           E++  V + R KL +W   PFF + + GCFVR+GIG   S P+YR+  +  V   E  + 
Sbjct: 362 EELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNSKPVYRVAEITGV--VETAKV 421

Query: 335 YKLENKITHKYLNVIWGNEASAARWQMAMVSDSAPLEDEYKQWVKEVERTGGRMLSKQDI 394
           Y+L    T+K L +  GN+    R  +  VS+    E E+ +W KE   + G  L   D 
Sbjct: 422 YQLGGTRTNKGLQLRHGNDQRVFR--LEFVSNQEFTESEFMKW-KEAMFSAGMQLPTLDE 481

Query: 395 LEKKE-AIQKVNNFVYSAATVKQMLQDKKSASARPLNIAAEKDRLRREMDVAVSKNDEAE 454
           + KKE +I++  N+ ++   +++++++K+     P N A +K +L +E  +A    D+ +
Sbjct: 482 INKKELSIKEALNYKFNDQDIEEIVKEKERFRKAPPNYAMKKTQLLKEKAMAEDLGDQDK 541

Query: 455 VERIKTRLQQL----EASRRLQMKDAKAIRLAEMNRKNRVENFKNASELRPLKDLKAGEA 514
            ++I+ +L +L    EA  R + K+  AI  + +N++NR  N   + +    +       
Sbjct: 542 AKQIQDQLNELEERAEALDRQRTKNISAI--SYINQRNREWNIVESEKALVAESHNMRNQ 601

Query: 515 GYDPFSRRWTRSRNYYVSNAGEANGAAEAAGNSDNVTPALENTRTEAGGTSDAGMAATAA 574
             DPF+RR  + +   VSN+ +   A +AA        A  N +  +G   D       A
Sbjct: 602 QMDPFTRR--QCKPTIVSNSRDP--AVQAA------ILAQLNAKYGSGVLPD-------A 661

Query: 575 ALEAAAGAGKLVDTNAPV--DGGTESNSLHNFELPISLAMLQKFGGALGAQAGFLARKQR 634
             E + G GK  D N+    D   +   +H+F++ I L +      AL            
Sbjct: 662 PKEMSKGQGKDKDLNSKTASDLSEDLFKVHDFDVKIDLQVPSSESKAL------------ 715

Query: 635 IEATVGRQVPENDGRRHALTLTVSDYKRRRGLL 661
             A   +  P  DG     +L + DYK+RRGL+
Sbjct: 722 --AITSKAPPAKDGAPRR-SLNLEDYKKRRGLI 715

[Close]
BLAST of CsaV3_4G005020 vs. Swiss-Prot
Match: sp|Q92541|RTF1_HUMAN (RNA polymerase-associated protein RTF1 homolog OS=Homo sapiens OX=9606 GN=RTF1 PE=1 SV=4)

HSP 1 Score: 106.3 bits (264), Expect = 1.3e-21
Identity = 109/393 (27.74%), Postives = 185/393 (47.07%), Query Frame = 0 

Query: 275 EDIKEVTIRRSKLAKWLMEPFFEELIVGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQ 334
           E++  V + R KL +W   PFF + + GCFVR+GIG   S P+YR+  +  V   E  + 
Sbjct: 357 EELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNSKPVYRVAEITGV--VETAKV 416

Query: 335 YKLENKITHKYLNVIWGNEASAARWQMAMVSDSAPLEDEYKQWVKEVERTGGRMLSKQDI 394
           Y+L    T+K L +  GN+    R  +  VS+    E E+ +W KE   + G  L   D 
Sbjct: 417 YQLGGTRTNKGLQLRHGNDQRVFR--LEFVSNQEFTESEFMKW-KEAMFSAGMQLPTLDE 476

Query: 395 LEKKE-AIQKVNNFVYSAATVKQMLQDKKSASARPLNIAAEKDRLRREMDVAVSKNDEAE 454
           + KKE +I++  N+ ++   +++++++K+     P N A +K +L +E  +A    D+ +
Sbjct: 477 INKKELSIKEALNYKFNDQDIEEIVKEKERFRKAPPNYAMKKTQLLKEKAMAEDLGDQDK 536

Query: 455 VERIKTRLQQL----EASRRLQMKDAKAIRLAEMNRKNRVENFKNASELRPLKDLKAGEA 514
            ++I+ +L +L    EA  R + K+  AI  + +N++NR  N   + +    +       
Sbjct: 537 AKQIQDQLNELEERAEALDRQRTKNISAI--SYINQRNREWNIVESEKALVAESHNMKNQ 596

Query: 515 GYDPFSRRWTRSRNYYVSNAGEANGAAEAAGNSDNVTPALENTRTEAGGTSDAGMAATAA 574
             DPF+RR  + +   VSN+ +   A +AA        A  N +  +G   D       A
Sbjct: 597 QMDPFTRR--QCKPTIVSNSRDP--AVQAA------ILAQLNAKYGSGVLPD-------A 656

Query: 575 ALEAAAGAGKLVDTN--APVDGGTESNSLHNFELPISLAMLQKFGGALGAQAGFLARKQR 634
             E + G GK  D N  +  D   +   +H+F++ I L +      AL            
Sbjct: 657 PKEMSKGQGKDKDLNSKSASDLSEDLFKVHDFDVKIDLQVPSSESKAL------------ 710

Query: 635 IEATVGRQVPENDGRRHALTLTVSDYKRRRGLL 661
             A   +  P  DG     +L + DYK+RRGL+
Sbjct: 717 --AITSKAPPAKDGAPRR-SLNLEDYKKRRGLI 710

[Close]
BLAST of CsaV3_4G005020 vs. Swiss-Prot
Match: sp|Q5RAD5|RTF1_PONAB (RNA polymerase-associated protein RTF1 homolog (Fragment) OS=Pongo abelii OX=9601 GN=RTF1 PE=2 SV=2)

HSP 1 Score: 95.5 bits (236), Expect = 2.3e-18
Identity = 95/338 (28.11%), Postives = 165/338 (48.82%), Query Frame = 0 

Query: 275 EDIKEVTIRRSKLAKWLMEPFFEELIVGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQ 334
           E++  V + R KL +W   PFF + + GCFVR+GIG   S P+YR+  +  V   E  + 
Sbjct: 352 EELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNSKPVYRVAEITGV--VETAKV 411

Query: 335 YKLENKITHKYLNVIWGNEASAARWQMAMVSDSAPLEDEYKQWVKEVERTGGRMLSKQDI 394
           Y+L    T+K L +  GN+    R  +  VS+    E E+ +W KE   + G  L   D 
Sbjct: 412 YQLGGTRTNKGLQLRHGNDQRVFR--LEFVSNQEFTESEFMKW-KEAMFSAGMQLPTLDE 471

Query: 395 LEKKE-AIQKVNNFVYSAATVKQMLQDKKSASARPLNIAAEKDRLRREMDVAVSKNDEAE 454
           + KKE +I++  N+ ++   +++++++K+     P N A +K +L +E  +A    D+ +
Sbjct: 472 INKKELSIKEALNYKFNDQDIEEIVKEKERFRKAPPNYAMKKTQLLKEKAMAEDLGDQDK 531

Query: 455 VERIKTRLQQL----EASRRLQMKDAKAIRLAEMNRKNRVENFKNASELRPLKDLKAGEA 514
            ++I+ +L +L    EA  R + K+  AI  + +N++NR  N   + +    +       
Sbjct: 532 AKQIQDQLNELEERAEALDRQRTKNISAI--SYINQRNREWNIVESEKALVAESHNMKNQ 591

Query: 515 GYDPFSRRWTRSRNYYVSNAGEANGAAEAAGNSDNVTPALENTRTEAGGTSDAGMAATAA 574
             DPF+RR  + +   VSN+ +   A +AA        A  N +  +G   D       A
Sbjct: 592 QMDPFTRR--QCKPTIVSNSRDP--AVQAA------ILAQLNAKYGSGVLPD-------A 651

Query: 575 ALEAAAGAGKLVDTN--APVDGGTESNSLHNFELPISL 606
             E + G GK  D N  +  D   +   +H+F++ I L
Sbjct: 652 PKEMSKGQGKDKDLNSKSASDLSEDLFKVHDFDVKIDL 665

[Close]
BLAST of CsaV3_4G005020 vs. Swiss-Prot
Match: sp|Q9W261|RTF1_DROME (RNA polymerase-associated protein Rtf1 OS=Drosophila melanogaster OX=7227 GN=Rtf1 PE=1 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 6.4e-16
Identity = 69/257 (26.85%), Postives = 128/257 (49.81%), Query Frame = 0 

Query: 273 TFEDIKEVTIRRSKLAKWLMEPFFEELIVGCFVRVGIGRSRSGPIYRLCLVRNVDATEPD 332
           T ED+ ++ + R K+ +++  P FE  ++ CFVR+ IG +   P+YR+  +  V   E  
Sbjct: 430 TREDLNKLRLSRYKMERFVNLPIFESTVLNCFVRISIGNNGQKPVYRVAEI--VGVVETG 489

Query: 333 RQYKLENKITHKYLNVIWGNEASAARWQMAMVSDSAPLEDEYKQWVKEVERTGGRMLSKQ 392
           + Y L    T++ L +  G +    R  +  +S+    E+E+ +W +  +++  +M +  
Sbjct: 490 KIYSLGTTRTNRGLRLKHGTQERVFR--LEFISNQEFTENEFNKWNEVCQQSHVQMPTID 549

Query: 393 DILEKKEAIQKVNNFVYSAATVKQMLQDKKSASARPLNIAAEKDRLRREMDVAVSKNDEA 452
            I  K+  I+K  N+ +    V +++++K     RP N A +K  L +E D A+ + D  
Sbjct: 550 LIAIKQNDIKKALNYEFKDEDVDKIVEEKNRFRNRPTNYAMKKTCLMKERDAAMLRGDYD 609

Query: 453 EVERIKTRLQQLE-ASRRLQMKDAKAIRLA----EMNRKNRVENFKNA--SELRPLKDLK 512
             + +  ++ +LE  +  L  + +  + L     + NRK  VE+ + A   E R  K LK
Sbjct: 610 IAQDLGQQIDELENRASELDKRRSHTLNLISYINDRNRKKNVEDAEKAILEEARANKGLK 669

Query: 513 AGEAGYDPFSRRWTRSR 523
                 DPF+RR T+ R
Sbjct: 670 IS----DPFTRRITQPR 678

[Close]
BLAST of CsaV3_4G005020 vs. TrEMBL
Match: tr|A0A0A0KXW1|A0A0A0KXW1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G038650 PE=4 SV=1)

HSP 1 Score: 1133.6 bits (2931), Expect = 0.0e+00
Identity = 660/660 (100.00%), Postives = 660/660 (100.00%), Query Frame = 0 

Query: 1   MADLENLLLEAAGRTNAAGRNRHSHPPSRRQREGSYSDAGSXXXXXXXXXXRGYASRKPS 60
           MADLENLLLEAAGRTNAAGRNRHSHPPSRRQREGSYSDAGSXXXXXXXXXXRGYASRKPS
Sbjct: 1   MADLENLLLEAAGRTNAAGRNRHSHPPSRRQREGSYSDAGSXXXXXXXXXXRGYASRKPS 60

Query: 61  GSQVPLKKRLDPTERDDDGGSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRRKLAG 120
           GSQVPLKKRLDPTERDDDGGSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRRKLAG
Sbjct: 61  GSQVPLKKRLDPTERDDDGGSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRRKLAG 120

Query: 121 MSELQREMILSDRASKKNDKHLYESLRAKMDKGKSAPSRKETPPLPSSRIRSSARSADRA 180
           MSELQREMILSDRASKKNDKHLYESLRAKMDKGKSAPSRKETPPLPSSRIRSSARSADRA
Sbjct: 121 MSELQREMILSDRASKKNDKHLYESLRAKMDKGKSAPSRKETPPLPSSRIRSSARSADRA 180

Query: 181 AAKDDALNELRAKRLKQQDPEAHRKLRDASRGNANSRRFSPTKRKPFTAPSLSSXXXXXX 240
           AAKDDALNELRAKRLKQQDPEAHRKLRDASRGNANSRRFSPTKRKPFTAPSLSSXXXXXX
Sbjct: 181 AAKDDALNELRAKRLKQQDPEAHRKLRDASRGNANSRRFSPTKRKPFTAPSLSSXXXXXX 240

Query: 241 XXXFQSDDEGSTGDGGMIDSDDERSIPGSDGPTFEDIKEVTIRRSKLAKWLMEPFFEELI 300
           XXXFQSDDEGSTGDGGMIDSDDERSIPGSDGPTFEDIKEVTIRRSKLAKWLMEPFFEELI
Sbjct: 241 XXXFQSDDEGSTGDGGMIDSDDERSIPGSDGPTFEDIKEVTIRRSKLAKWLMEPFFEELI 300

Query: 301 VGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNEASAARWQ 360
           VGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNEASAARWQ
Sbjct: 301 VGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNEASAARWQ 360

Query: 361 MAMVSDSAPLEDEYKQWVKEVERTGGRMLSKQDILEKKEAIQKVNNFVYSAATVKQMLQD 420
           MAMVSDSAPLEDEYKQWVKEVERTGGRMLSKQDILEKKEAIQKVNNFVYSAATVKQMLQD
Sbjct: 361 MAMVSDSAPLEDEYKQWVKEVERTGGRMLSKQDILEKKEAIQKVNNFVYSAATVKQMLQD 420

Query: 421 KKSASARPLNIAAEKDRLRREMDVAVSKNDEAEVERIKTRLQQLEASRRLQMKDAKAIRL 480
           KKSASARPLNIAAEKDRLRREMDVAVSKNDEAEVERIKTRLQQLEASRRLQMKDAKAIRL
Sbjct: 421 KKSASARPLNIAAEKDRLRREMDVAVSKNDEAEVERIKTRLQQLEASRRLQMKDAKAIRL 480

Query: 481 AEMNRKNRVENFKNASELRPLKDLKAGEAGYDPFSRRWTRSRNYYVSNAGEANGAAEAAG 540
           AEMNRKNRVENFKNASELRPLKDLKAGEAGYDPFSRRWTRSRNYYVSNAGEANGAAEAAG
Sbjct: 481 AEMNRKNRVENFKNASELRPLKDLKAGEAGYDPFSRRWTRSRNYYVSNAGEANGAAEAAG 540

Query: 541 NSDNVTPALENTRTEAGGTSDAGMAATAAALEAAAGAGKLVDTNAPVDGGTESNSLHNFE 600
           NSDNVTPALENTRTEAGGTSDAGMAATAAALEAAAGAGKLVDTNAPVDGGTESNSLHNFE
Sbjct: 541 NSDNVTPALENTRTEAGGTSDAGMAATAAALEAAAGAGKLVDTNAPVDGGTESNSLHNFE 600

Query: 601 LPISLAMLQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL 660
           LPISLAMLQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL
Sbjct: 601 LPISLAMLQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL 660

[Close]
BLAST of CsaV3_4G005020 vs. TrEMBL
Match: tr|A0A1S3BXS8|A0A1S3BXS8_CUCME (protein RTF1 homolog OS=Cucumis melo OX=3656 GN=LOC103494388 PE=4 SV=1)

HSP 1 Score: 1049.3 bits (2712), Expect = 3.7e-303
Identity = 621/660 (94.09%), Postives = 629/660 (95.30%), Query Frame = 0 

Query: 1   MADLENLLLEAAGRTNAAGRNRHSHPPSRRQREGSYSDAGSXXXXXXXXXXRGYASRKPS 60
           MADLENLLLEAAGRTN                         XXXXXXXXXX GYASRKPS
Sbjct: 1   MADLENLLLEAAGRTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYASRKPS 60

Query: 61  GSQVPLKKRLDPTERDDDGGSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRRKLAG 120
           GSQVPLKKRLDPTERDDDGGS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRRKLAG
Sbjct: 61  GSQVPLKKRLDPTERDDDGGSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRRKLAG 120

Query: 121 MSELQREMILSDRASKKNDKHLYESLRAKMDKGKSAPSRKETPPLPSSRIRSSARSADRA 180
           MSELQREMILSDRASKKNDKHLYESLRAKMDKGK+APSRKETPPLPSSRIRSSARSADRA
Sbjct: 121 MSELQREMILSDRASKKNDKHLYESLRAKMDKGKTAPSRKETPPLPSSRIRSSARSADRA 180

Query: 181 AAKDDALNELRAKRLKQQDPEAHRKLRDASRGNANSRRFSPTKRKPFTAPSLSSXXXXXX 240
           AAKDDALNELRAKRLKQQDPEAHRKLRDASRGN+N+RRFSPTKRKPFTAPSLSSXXXXXX
Sbjct: 181 AAKDDALNELRAKRLKQQDPEAHRKLRDASRGNSNNRRFSPTKRKPFTAPSLSSXXXXXX 240

Query: 241 XXXFQSDDEGSTGDGGMIDSDDERSIPGSDGPTFEDIKEVTIRRSKLAKWLMEPFFEELI 300
           XXXFQSDDEGSTGDGGMIDSDDERS+PGSDGPTFEDIKE+TIRRSKLAKWLMEPFFEELI
Sbjct: 241 XXXFQSDDEGSTGDGGMIDSDDERSMPGSDGPTFEDIKEITIRRSKLAKWLMEPFFEELI 300

Query: 301 VGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNEASAARWQ 360
           VGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNE SAARWQ
Sbjct: 301 VGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNENSAARWQ 360

Query: 361 MAMVSDSAPLEDEYKQWVKEVERTGGRMLSKQDILEKKEAIQKVNNFVYSAATVKQMLQD 420
           MAMVSDSAPLEDEYKQWVKEVERTGGRMLSKQD+LEKK+AIQKVNNFVYSAATVKQMLQD
Sbjct: 361 MAMVSDSAPLEDEYKQWVKEVERTGGRMLSKQDVLEKKDAIQKVNNFVYSAATVKQMLQD 420

Query: 421 KKSASARPLNIAAEKDRLRREMDVAVSKNDEAEVERIKTRLQQLEASRRLQMKDAKAIRL 480
           KKSASARPLNIAAEKDRLRREMDVAVSKNDEAEVERIK RLQQLEASRRLQMKDAKAIRL
Sbjct: 421 KKSASARPLNIAAEKDRLRREMDVAVSKNDEAEVERIKGRLQQLEASRRLQMKDAKAIRL 480

Query: 481 AEMNRKNRVENFKNASELRPLKDLKAGEAGYDPFSRRWTRSRNYYVSNAGEANGAAEAAG 540
           AEMNRKNRVENFKNASELRPLKDLKAGEAGYDPFSRRWTRSRNYYVSNAGEANGAAEAAG
Sbjct: 481 AEMNRKNRVENFKNASELRPLKDLKAGEAGYDPFSRRWTRSRNYYVSNAGEANGAAEAAG 540

Query: 541 NSDNVTPALENTRTEAGGTSDAGMAATAAALEAAAGAGKLVDTNAPVDGGTESNSLHNFE 600
           NSD VTPALE+TRT AGGTSDAGMAATAAALEAAAGAGKLVDTNAPVDGGTESNSLHNFE
Sbjct: 541 NSDTVTPALESTRTGAGGTSDAGMAATAAALEAAAGAGKLVDTNAPVDGGTESNSLHNFE 600

Query: 601 LPISLAMLQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL 660
           LPISLAMLQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL
Sbjct: 601 LPISLAMLQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL 660

[Close]
BLAST of CsaV3_4G005020 vs. TrEMBL
Match: tr|A0A251PVJ9|A0A251PVJ9_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G050300 PE=4 SV=1)

HSP 1 Score: 821.6 bits (2121), Expect = 1.2e-234
Identity = 480/661 (72.62%), Postives = 531/661 (80.33%), Query Frame = 0 

Query: 1   MADLENLLLEAAGRTNAAGRNRHSHPPSRRQREGSYSDAGSXXXXXXXXXXRGYASRKPS 60
           MADLENLLLEAAGRT++                        XXXXXXXXX RGYASRKPS
Sbjct: 1   MADLENLLLEAAGRTSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRGYASRKPS 60

Query: 61  GSQVPLKKRLDPTERDDDGGSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRRKLAG 120
           G+QVPLKKRLDPTE DD+ GSQ                               DRRKLA 
Sbjct: 61  GTQVPLKKRLDPTEMDDEQGSQ-EEGDYNDSGSDRGGDSNESDVGSDLYKDEDDRRKLAE 120

Query: 121 MSELQREMILSDRASKKNDKHLYESLRAKMDKGKSAPSRKETPPLPSSRIRSSARSADRA 180
           MSELQRE+ILSDRA KK+DK L E  R K DKGK+  SRKETPPLPSSR+RSSARSADRA
Sbjct: 121 MSELQRELILSDRAQKKDDKSLKEKFRPKWDKGKTTHSRKETPPLPSSRVRSSARSADRA 180

Query: 181 AAKDDALNELRAKRLKQQDPEAHRKLRDASRGNANSRRFSPTKRKPFTAPSLSSXXXXXX 240
           AAKDDALNELRAKRLKQQDPEAHRKLRDASRG++ SR FS   RK FTA   S XXXXXX
Sbjct: 181 AAKDDALNELRAKRLKQQDPEAHRKLRDASRGSSGSRSFSHMTRKSFTAVGRSXXXXXXX 240

Query: 241 XXXFQSDDEGSTGDGGMIDSDDERSIPGSDGPTFEDIKEVTIRRSKLAKWLMEPFFEELI 300
           XXX      GSTG+  M+DSDDER    S+G TF+DIKE+TIRRSKLAKWLMEPFFEELI
Sbjct: 241 XXXXXXXXXGSTGEDPMMDSDDER----SEGLTFDDIKEITIRRSKLAKWLMEPFFEELI 300

Query: 301 VGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNEASAARWQ 360
           VGCFVRVGIGRS+SGPIYRLC+VRNVDA++PDR+YKLENK THKYLNV+WGNE SAARWQ
Sbjct: 301 VGCFVRVGIGRSKSGPIYRLCMVRNVDASDPDRKYKLENKTTHKYLNVVWGNENSAARWQ 360

Query: 361 MAMVSDSAPLEDEYKQWVKEVERTGGRMLSKQDILEKKEAIQKVNNFVYSAATVKQMLQD 420
           MAM+SDSAPLE+E+KQWV+EVER+GGR+ SKQD+LEKKEAI+K+N FVYSAATVKQM+++
Sbjct: 361 MAMISDSAPLEEEFKQWVREVERSGGRLPSKQDVLEKKEAIKKINTFVYSAATVKQMIEE 420

Query: 421 KKSASARPLNIAAEKDRLRREMDVAVSKNDEAEVERIKTRLQQLEASRRLQMKDAKAIRL 480
           KKSAS+RPLNIA EKDRLRRE++VA SK+D+AEVERIKTRLQQLEA R+ Q KD+KA+RL
Sbjct: 421 KKSASSRPLNIALEKDRLRRELEVAQSKHDDAEVERIKTRLQQLEARRQSQGKDSKAVRL 480

Query: 481 AEMNRKNRVENFKNASELRPLK-DLKAGEAGYDPFSRRWTRSRNYYVSNAGEANGAAEAA 540
           AEMNRKNRVENFKNASEL+P+K  LKAGEAGYDPFSRRWTRSRNYYVS  GE  G AEA 
Sbjct: 481 AEMNRKNRVENFKNASELKPVKTGLKAGEAGYDPFSRRWTRSRNYYVSKPGEQKGEAEAI 540

Query: 541 GNSDNVTPALENTRTEAGGTSDAGMAATAAALEAAAGAGKLVDTNAPVDGGTESNSLHNF 600
            ++D     +E+  T   G   AGMAATAAALEAAAGAGKL+DT+APVD GTESN +HNF
Sbjct: 541 VDADGALADIESNGTAVVGAVRAGMAATAAALEAAAGAGKLIDTSAPVDFGTESNLMHNF 600

Query: 601 ELPISLAMLQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYKRRRGL 660
           ELPISLA LQKFGG  GAQ GFLARKQRIEATVG +VPENDGRRHALTLTVSDYKRR GL
Sbjct: 601 ELPISLATLQKFGGPQGAQEGFLARKQRIEATVGCRVPENDGRRHALTLTVSDYKRRMGL 656

[Close]
BLAST of CsaV3_4G005020 vs. TrEMBL
Match: tr|M5XIG0|M5XIG0_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa002666mg PE=4 SV=1)

HSP 1 Score: 803.9 bits (2075), Expect = 2.7e-229
Identity = 474/661 (71.71%), Postives = 524/661 (79.27%), Query Frame = 0 

Query: 1   MADLENLLLEAAGRTNAAGRNRHSHPPSRRQREGSYSDAGSXXXXXXXXXXRGYASRKPS 60
           MADLENLLLEAAGRT++                        XXXXXXXXX RGYASRKPS
Sbjct: 1   MADLENLLLEAAGRTSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRGYASRKPS 60

Query: 61  GSQVPLKKRLDPTERDDDGGSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRRKLAG 120
           G+QVPLKKRLDPTE DD+ GSQ                               DRRKLA 
Sbjct: 61  GTQVPLKKRLDPTEMDDEQGSQ-EEGDYNDSGSDRGGDSNESDVGSDLYKDEDDRRKLAE 120

Query: 121 MSELQREMILSDRASKKNDKHLYESLRAKMDKGKSAPSRKETPPLPSSRIRSSARSADRA 180
           MSELQRE+ILSDRA KK+DK L E  R K          KETPPLPSSR+RSSARSADRA
Sbjct: 121 MSELQRELILSDRAQKKDDKSLKEKFRPK----------KETPPLPSSRVRSSARSADRA 180

Query: 181 AAKDDALNELRAKRLKQQDPEAHRKLRDASRGNANSRRFSPTKRKPFTAPSLSSXXXXXX 240
           AAKDDALNELRAKRLKQQDPEAHRKLRDASRG++ SR FS   RK FTA   S XXXXXX
Sbjct: 181 AAKDDALNELRAKRLKQQDPEAHRKLRDASRGSSGSRSFSHMTRKSFTAVGRSXXXXXXX 240

Query: 241 XXXFQSDDEGSTGDGGMIDSDDERSIPGSDGPTFEDIKEVTIRRSKLAKWLMEPFFEELI 300
           XXX      GSTG+  M+DSDDER    S+G TF+DIKE+TIRRSKLAKWLMEPFFEELI
Sbjct: 241 XXXXXXXXXGSTGEDPMMDSDDER----SEGLTFDDIKEITIRRSKLAKWLMEPFFEELI 300

Query: 301 VGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNEASAARWQ 360
           VGCFVRVGIGRS+SGPIYRLC+VRNVDA++PDR+YKLENK THKYLNV+WGNE SAARWQ
Sbjct: 301 VGCFVRVGIGRSKSGPIYRLCMVRNVDASDPDRKYKLENKTTHKYLNVVWGNENSAARWQ 360

Query: 361 MAMVSDSAPLEDEYKQWVKEVERTGGRMLSKQDILEKKEAIQKVNNFVYSAATVKQMLQD 420
           MAM+SDSAPLE+E+KQWV+EVER+GGR+ SKQD+LEKKEAI+K+N FVYSAATVKQM+++
Sbjct: 361 MAMISDSAPLEEEFKQWVREVERSGGRLPSKQDVLEKKEAIKKINTFVYSAATVKQMIEE 420

Query: 421 KKSASARPLNIAAEKDRLRREMDVAVSKNDEAEVERIKTRLQQLEASRRLQMKDAKAIRL 480
           KKSAS+RPLNIA EKDRLRRE++VA SK+D+AEVERIKTRLQQLEA R+ Q KD+KA+RL
Sbjct: 421 KKSASSRPLNIALEKDRLRRELEVAQSKHDDAEVERIKTRLQQLEARRQSQGKDSKAVRL 480

Query: 481 AEMNRKNRVENFKNASELRPLK-DLKAGEAGYDPFSRRWTRSRNYYVSNAGEANGAAEAA 540
           AEMNRKNRVENFKNASEL+P+K  LKAGEAGYDPFSRRWTRSRNYYVS  GE  G AEA 
Sbjct: 481 AEMNRKNRVENFKNASELKPVKTGLKAGEAGYDPFSRRWTRSRNYYVSKPGEQKGEAEAI 540

Query: 541 GNSDNVTPALENTRTEAGGTSDAGMAATAAALEAAAGAGKLVDTNAPVDGGTESNSLHNF 600
            ++D     +E+  T   G   AGMAATAAALEAAAGAGKL+DT+APVD GTESN +HNF
Sbjct: 541 VDADGALADIESNGTAVVGAVRAGMAATAAALEAAAGAGKLIDTSAPVDFGTESNLMHNF 600

Query: 601 ELPISLAMLQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYKRRRGL 660
           ELPISLA LQKFGG  GAQ GFLARKQRIEATVG +VPENDGRRHALTLTVSDYKRR GL
Sbjct: 601 ELPISLATLQKFGGPQGAQEGFLARKQRIEATVGCRVPENDGRRHALTLTVSDYKRRMGL 646

[Close]
BLAST of CsaV3_4G005020 vs. TrEMBL
Match: tr|K7L2P2|K7L2P2_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100818650 PE=4 SV=1)

HSP 1 Score: 802.0 bits (2070), Expect = 1.0e-228
Identity = 466/661 (70.50%), Postives = 532/661 (80.48%), Query Frame = 0 

Query: 1   MADLENLLLEAAGRTNAAGRNRHSHPPSRRQREGSYSDAGSXXXXXXXXXXRGYASRKPS 60
           MADLENLLLEAAGRT  AGRNRHS P SRR+ +G+YSD GS            YASRKPS
Sbjct: 1   MADLENLLLEAAGRTGTAGRNRHSLPSSRRRHDGAYSDGGSDSRDEDSDDELNYASRKPS 60

Query: 61  GSQVPLKKRLDPTERDDDGGSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRRKLAG 120
           GSQVPLKKRLDPTERDDD GSQ         XXXXXXX               DRRKL+ 
Sbjct: 61  GSQVPLKKRLDPTERDDDLGSQ-EEADDDGRXXXXXXXSDESNIGDDLYKDEDDRRKLSE 120

Query: 121 MSELQREMILSDRASKKNDKHLYESLRAKMDKGKSAPSRKETPPLPSSRIRSSARSADRA 180
           M+ELQREMILSDRA+KK+DK+L   + +K +KGK A  RK++PP+ SSR+R+SARSADR 
Sbjct: 121 MTELQREMILSDRATKKDDKNLLGKIASKREKGKVAVPRKQSPPMSSSRMRASARSADR- 180

Query: 181 AAKDDALNELRAKRLKQQDPEAHRKLRDASRGNANSRRFSPTKRKPFTAPSLSSXXXXXX 240
           +AK+DALNELRAKRLKQQDPEAHR+LR+ASR NA SR FSP KRKPFT      XXXXXX
Sbjct: 181 SAKNDALNELRAKRLKQQDPEAHRRLREASR-NAGSRHFSPPKRKPFTXXXXXXXXXXXX 240

Query: 241 XXXFQSDDEGSTGDGGMIDSDDERSIPGSDGPTFEDIKEVTIRRSKLAKWLMEPFFEELI 300
           XXX         GDGG++DSDD+R++ GS+GP+F+D+KE+TIRRSKLAKW MEPFFEELI
Sbjct: 241 XXXXXXXXXXXXGDGGIVDSDDDRALAGSEGPSFQDVKEITIRRSKLAKWFMEPFFEELI 300

Query: 301 VGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNEASAARWQ 360
           VGCFVRVGIGRS++GPIYRLC+V+NVDA+EPDRQYKLENK T+KYLNV+WGNE+SAARWQ
Sbjct: 301 VGCFVRVGIGRSKTGPIYRLCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNESSAARWQ 360

Query: 361 MAMVSDSAPLEDEYKQWVKEVERTGGRMLSKQDILEKKEAIQKVNNFVYSAATVKQMLQD 420
           MAMVSDSAPLE+E+KQWVKEV+R+GGRM SKQD+LEKK+AIQK   FVYSAATVKQMLQ+
Sbjct: 361 MAMVSDSAPLEEEFKQWVKEVDRSGGRMPSKQDVLEKKQAIQKAITFVYSAATVKQMLQE 420

Query: 421 KKSASARPLNIAAEKDRLRREMDVAVSKNDEAEVERIKTRLQQLEASRRLQMKDAKAIRL 480
           KKSAS RPLN+AAEKDRLRRE+++A SK DEAEVERIKTRL +LEASR+ + KDAKA++L
Sbjct: 421 KKSASTRPLNVAAEKDRLRRELEIAQSKYDEAEVERIKTRLLELEASRQAKQKDAKALKL 480

Query: 481 AEMNRKNRVENFKNASELRPLK-DLKAGEAGYDPFSRRWTRSRNYYVSNAGEANGAAEAA 540
                        NASE++P+   LKAGEAGYDPFSRRWTRSRNYY +  GE   A   +
Sbjct: 481 XXXXXXXXXXXXXNASEMKPVNTGLKAGEAGYDPFSRRWTRSRNYYAAKPGEKAAAGNNS 540

Query: 541 GNSDNVTPALENTRTEAGGTSDAGMAATAAALEAAAGAGKLVDTNAPVDGGTESNSLHNF 600
            N  NV  A  N  T A  T++AGM ATAAALEAAAGAGKLVDT+APVD GTESN LHNF
Sbjct: 541 VNG-NVAGAGSN-GTGAPVTAEAGMVATAAALEAAAGAGKLVDTSAPVDQGTESNMLHNF 600

Query: 601 ELPISLAMLQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYKRRRGL 660
           ELPISLA+LQKFGGA GAQAGF+ARKQ+IEATVG +V ENDGRRHALTLTVSDYKRRRGL
Sbjct: 601 ELPISLALLQKFGGAQGAQAGFMARKQKIEATVGFRVSENDGRRHALTLTVSDYKRRRGL 656

The following BLAST results are available for this feature:
BLAST of CsaV3_4G005020 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004149150.10.0e+00100.00PREDICTED: RNA polymerase-associated protein RTF1 homolog [Cucumis sativus] >XP_... [more]
XP_008453742.15.6e-30394.09PREDICTED: protein RTF1 homolog [Cucumis melo] >XP_008453743.1 PREDICTED: protei... [more]
XP_023552862.12.5e-29587.42protein RTF1 homolog [Cucurbita pepo subsp. pepo][more]
XP_022136687.15.6e-29591.21protein RTF1 homolog [Momordica charantia][more]
XP_022929443.11.7e-29186.82protein RTF1 homolog [Cucurbita moschata] >XP_022929444.1 protein RTF1 homolog [... [more]
BLAST of CsaV3_4G005020 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G61040.12.0e-20166.52plus-3 domain-containing protein[more]
BLAST of CsaV3_4G005020 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9C950|VIP5_ARATH3.5e-20066.52Protein RTF1 homolog OS=Arabidopsis thaliana OX=3702 GN=VIP5 PE=1 SV=1[more]
sp|A2AQ19|RTF1_MOUSE7.8e-2227.74RNA polymerase-associated protein RTF1 homolog OS=Mus musculus OX=10090 GN=Rtf1 ... [more]
sp|Q92541|RTF1_HUMAN1.3e-2127.74RNA polymerase-associated protein RTF1 homolog OS=Homo sapiens OX=9606 GN=RTF1 P... [more]
sp|Q5RAD5|RTF1_PONAB2.3e-1828.11RNA polymerase-associated protein RTF1 homolog (Fragment) OS=Pongo abelii OX=960... [more]
sp|Q9W261|RTF1_DROME6.4e-1626.85RNA polymerase-associated protein Rtf1 OS=Drosophila melanogaster OX=7227 GN=Rtf... [more]
BLAST of CsaV3_4G005020 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KXW1|A0A0A0KXW1_CUCSA0.0e+00100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G038650 PE=4 SV=1[more]
tr|A0A1S3BXS8|A0A1S3BXS8_CUCME3.7e-30394.09protein RTF1 homolog OS=Cucumis melo OX=3656 GN=LOC103494388 PE=4 SV=1[more]
tr|A0A251PVJ9|A0A251PVJ9_PRUPE1.2e-23472.62Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G050300 PE=4 SV=1[more]
tr|M5XIG0|M5XIG0_PRUPE2.7e-22971.71Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa002666mg PE=4 SV=1[more]
tr|K7L2P2|K7L2P2_SOYBN1.0e-22870.50Uncharacterized protein OS=Glycine max OX=3847 GN=100818650 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016593Cdc73/Paf1 complex
Vocabulary: Biological Process
TermDefinition
GO:0006368transcription elongation from RNA polymerase II promoter
GO:0016570histone modification
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR031102Rtf1
IPR036128Plus3-like_sf
IPR004343Plus-3_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016570 histone modification
biological_process GO:0006368 transcription elongation from RNA polymerase II promoter
biological_process GO:0006352 DNA-templated transcription, initiation
biological_process GO:0009910 negative regulation of flower development
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0050789 regulation of biological process
cellular_component GO:0016593 Cdc73/Paf1 complex
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G005020.1CsaV3_4G005020.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 435..467
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 176..212
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 129..158
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..274
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 28..56
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 213..241
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 77..108
NoneNo IPR availablePANTHERPTHR13115:SF8RNA POLYMERASE-ASSOCIATED PROTEIN RTF1 HOMOLOGcoord: 1..659
IPR004343Plus-3 domainSMARTSM00719rtf1coord: 271..383
e-value: 1.5E-44
score: 164.0
IPR004343Plus-3 domainPFAMPF03126Plus-3coord: 276..381
e-value: 7.6E-31
score: 106.8
IPR004343Plus-3 domainPROSITEPS51360PLUS3coord: 271..406
score: 36.91
IPR036128Plus3-like superfamilyGENE3DG3DSA:2.170.260.30coord: 272..404
e-value: 9.7E-39
score: 134.1
IPR036128Plus3-like superfamilySUPERFAMILYSSF159042Plus3-likecoord: 273..404
IPR031102RNA polymerase-associated protein Rtf1PANTHERPTHR13115UNCHARACTERIZEDcoord: 1..659