CmaCh16G006620 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh16G006620
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	RNA polymerase-associated protein RTF1 like
Location	Cma_Chr16 : 3449008 .. 3451164 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTTTTTAGGTTCGTAATGGCTGTAGTATTGATTATGTTTATGGTATTCTCTGATTTGCTTGGTTCTGACTGGATTTTGAGCCTTATCAACCTCAAGGTTTTATAAACAGTCTTGCTACTTTTCAGGACGGGAGGGCAAGTCTAGAAATCACAGATTCTGGTACCAGAGGCTTCAAAACATGGCAGATCTAGAAAATTTACTTCTTGAGGCTGCGGGAAGAACTAAGGCATCCGGGAGAAATCGACACTCTCATCCACCATCACGAAGACAGCGCGAAGGTTCATATTCTGATGCTGGAAGTGACTCGAGGGATGATGACTCAGATGATGAACGTGGTTATGCGAGCAGGAAGCCATCTGGATCTCAGGTTCCTCTGAAGAAGAGGTTAGATCCTAATGAGAGGGATGATGATGTGGGCAGCCCAGAAGAAGGGGAAGACGAAGATGTTGGTTCAGAACACGAGGGTGACAGCAGTGATGAGTCTGATGTTGGGGATGATCTTTACAAAGATGACGATGACAGGCGCAAGCTTGCTGGTATGTCTGAACTTCAAAGGGAGATGATTCTTTCAGACAGAGCATCGAAGAAGAATGATAAGCATTTATATGAAAGCTTGAGATCTAAGATGGATAAAGGGAAGGCTGCCCCGTCTCGGAAAGAAAATCCTCCTCTCCCGTCATCTCGTATTAGATCGTCAGCCCGATCTGCTGATAGAGCAGCTGCAAAAGATGATGCTTTAAATGAATTGCGTGCAAAAAGGTTGAAGCAGCAGGACCCTGAGGCTCACCGCAAATTGAGAGATACATCTAGAGGAAACGCAAATAATCGAAGGTTCTCACCAACAAAGCGAAAGCCCTTCACTGCTCCTAGTTTGAGTAGCTCAAGCCAAAGTGAAAGTGAAAGTAGGTTTCAAAGTGACGATGAAGGATCTACAGGAGATGGTGGAATGATTGACAGTGACGATGAAAGAACCATGCCTGGTTCAAATGGGCCAACATTTGATGATATCAAGGAAATTACTATTCGTAGATCAAAGCTTGCAAAATGGTTAATGGAGCCATTCTTTGAGGAGTTGATTGTTGGATGCTTTGTGAGAGTCGGAATCGGGAGATCAAGATCTGGGCCTATCTACAGGCTCTGCTTGGTGCGCAATGTTGATGCAACAGAACCTGATCGTCAGTATAAACTCGAGAACAAAATCACGCATAAATATCTTAATGTTATTTGGGGAAATGAAAGTTCTGCTGCCAGATGGCAAATGGCTATGGTTTCGGACTCTGTTCCACTCGAGGATGAATATAAACAGTGGGTGAAGGAAGTAGAGCGAACGGGCGGTCGGATGCTGAGCAAGCAGGATATCTTGGAGAAGAAGGAAGCTATACAGAAAGCCAACAACTTTGTGTACTCAGCAGCCACAGTGAAGCAGATGTTGCAGGAGAAAAAATTTGCCTCATCAAGGCCATTAAATATTGCAGCTGAGAAGGACCGACTGAGGAATCAGATGGACGTAGCACTAAGCAAAAACAATGAAGCTGAGGTGGAGAGGATCAAGGCAAAACTGCGCCAATTAGACGCATCCAGGAGGTCACAAATGAAAGATGCCAAGGCTATTAGGTTATCTGAGATGAACAGGAAGAATAGGGTGGAAAACTTCAAGAATGCATCAGAACTAAGACCCACGAAAGATTTGAAAGCCGGTGAGGCTGGTTATGATCCCTTCTCTAGGAGATGGACGAGGTCGAGGAATTATTATGTTTCAAACGCTGGTCAAGTCGATGGGGCTGCCGAGGCAGCTGGCAACAGTGACAATATAACTCCTGCATCAGAGAGTACTGGAACAGGATCTGGAGAAGCTGGTGTGGCAGCTACCGCAGCAGCTTTGGAAGCTGCTGCTGGTGCTGGAAAGTTGGTCGATACTAACGCTCCAGTAGATGGAGGAACAGAATCGAACTTGCTGCACAACTTCGAGCTGCCTATATCATTGACTGTGCTTCAGAAATTTGGTGGTGCTCTGGGAGCTCAAGCTGGGTTCTTAGCAAGGAAACAAAGGATAGAAGCCACAGTTGGGCGTCAAGTCCCTGAGAATGATGGTAGGCGGCATGCACTGACACTCACTGTTAGCGACTACAAGAGAAGAAGAGGGCTTCTTTGA

mRNA sequence

ATGAAGTTTTTAGGACGGGAGGGCAAGTCTAGAAATCACAGATTCTGGTACCAGAGGCTTCAAAACATGGCAGATCTAGAAAATTTACTTCTTGAGGCTGCGGGAAGAACTAAGGCATCCGGGAGAAATCGACACTCTCATCCACCATCACGAAGACAGCGCGAAGGTTCATATTCTGATGCTGGAAGTGACTCGAGGGATGATGACTCAGATGATGAACGTGGTTATGCGAGCAGGAAGCCATCTGGATCTCAGGTTCCTCTGAAGAAGAGGTTAGATCCTAATGAGAGGGATGATGATGTGGGCAGCCCAGAAGAAGGGGAAGACGAAGATGTTGGTTCAGAACACGAGGGTGACAGCAGTGATGAGTCTGATGTTGGGGATGATCTTTACAAAGATGACGATGACAGGCGCAAGCTTGCTGGTATGTCTGAACTTCAAAGGGAGATGATTCTTTCAGACAGAGCATCGAAGAAGAATGATAAGCATTTATATGAAAGCTTGAGATCTAAGATGGATAAAGGGAAGGCTGCCCCGTCTCGGAAAGAAAATCCTCCTCTCCCGTCATCTCGTATTAGATCGTCAGCCCGATCTGCTGATAGAGCAGCTGCAAAAGATGATGCTTTAAATGAATTGCGTGCAAAAAGGTTGAAGCAGCAGGACCCTGAGGCTCACCGCAAATTGAGAGATACATCTAGAGGAAACGCAAATAATCGAAGGTTCTCACCAACAAAGCGAAAGCCCTTCACTGCTCCTAGTTTGAGTAGCTCAAGCCAAAGTGAAAGTGAAAGTAGGTTTCAAAGTGACGATGAAGGATCTACAGGAGATGGTGGAATGATTGACAGTGACGATGAAAGAACCATGCCTGGTTCAAATGGGCCAACATTTGATGATATCAAGGAAATTACTATTCGTAGATCAAAGCTTGCAAAATGGTTAATGGAGCCATTCTTTGAGGAGTTGATTGTTGGATGCTTTGTGAGAGTCGGAATCGGGAGATCAAGATCTGGGCCTATCTACAGGCTCTGCTTGGTGCGCAATGTTGATGCAACAGAACCTGATCGTCAGTATAAACTCGAGAACAAAATCACGCATAAATATCTTAATGTTATTTGGGGAAATGAAAGTTCTGCTGCCAGATGGCAAATGGCTATGGTTTCGGACTCTGTTCCACTCGAGGATGAATATAAACAGTGGGTGAAGGAAGTAGAGCGAACGGGCGGTCGGATGCTGAGCAAGCAGGATATCTTGGAGAAGAAGGAAGCTATACAGAAAGCCAACAACTTTGTGTACTCAGCAGCCACAGTGAAGCAGATGTTGCAGGAGAAAAAATTTGCCTCATCAAGGCCATTAAATATTGCAGCTGAGAAGGACCGACTGAGGAATCAGATGGACGTAGCACTAAGCAAAAACAATGAAGCTGAGGTGGAGAGGATCAAGGCAAAACTGCGCCAATTAGACGCATCCAGGAGGTCACAAATGAAAGATGCCAAGGCTATTAGGTTATCTGAGATGAACAGGAAGAATAGGGTGGAAAACTTCAAGAATGCATCAGAACTAAGACCCACGAAAGATTTGAAAGCCGGTGAGGCTGGTTATGATCCCTTCTCTAGGAGATGGACGAGGTCGAGGAATTATTATGTTTCAAACGCTGGTCAAGTCGATGGGGCTGCCGAGGCAGCTGGCAACAGTGACAATATAACTCCTGCATCAGAGAGTACTGGAACAGGATCTGGAGAAGCTGGTGTGGCAGCTACCGCAGCAGCTTTGGAAGCTGCTGCTGGTGCTGGAAAGTTGGTCGATACTAACGCTCCAGTAGATGGAGGAACAGAATCGAACTTGCTGCACAACTTCGAGCTGCCTATATCATTGACTGTGCTTCAGAAATTTGGTGGTGCTCTGGGAGCTCAAGCTGGGTTCTTAGCAAGGAAACAAAGGATAGAAGCCACAGTTGGGCGTCAAGTCCCTGAGAATGATGGTAGGCGGCATGCACTGACACTCACTGTTAGCGACTACAAGAGAAGAAGAGGGCTTCTTTGA

Coding sequence (CDS)

ATGAAGTTTTTAGGACGGGAGGGCAAGTCTAGAAATCACAGATTCTGGTACCAGAGGCTTCAAAACATGGCAGATCTAGAAAATTTACTTCTTGAGGCTGCGGGAAGAACTAAGGCATCCGGGAGAAATCGACACTCTCATCCACCATCACGAAGACAGCGCGAAGGTTCATATTCTGATGCTGGAAGTGACTCGAGGGATGATGACTCAGATGATGAACGTGGTTATGCGAGCAGGAAGCCATCTGGATCTCAGGTTCCTCTGAAGAAGAGGTTAGATCCTAATGAGAGGGATGATGATGTGGGCAGCCCAGAAGAAGGGGAAGACGAAGATGTTGGTTCAGAACACGAGGGTGACAGCAGTGATGAGTCTGATGTTGGGGATGATCTTTACAAAGATGACGATGACAGGCGCAAGCTTGCTGGTATGTCTGAACTTCAAAGGGAGATGATTCTTTCAGACAGAGCATCGAAGAAGAATGATAAGCATTTATATGAAAGCTTGAGATCTAAGATGGATAAAGGGAAGGCTGCCCCGTCTCGGAAAGAAAATCCTCCTCTCCCGTCATCTCGTATTAGATCGTCAGCCCGATCTGCTGATAGAGCAGCTGCAAAAGATGATGCTTTAAATGAATTGCGTGCAAAAAGGTTGAAGCAGCAGGACCCTGAGGCTCACCGCAAATTGAGAGATACATCTAGAGGAAACGCAAATAATCGAAGGTTCTCACCAACAAAGCGAAAGCCCTTCACTGCTCCTAGTTTGAGTAGCTCAAGCCAAAGTGAAAGTGAAAGTAGGTTTCAAAGTGACGATGAAGGATCTACAGGAGATGGTGGAATGATTGACAGTGACGATGAAAGAACCATGCCTGGTTCAAATGGGCCAACATTTGATGATATCAAGGAAATTACTATTCGTAGATCAAAGCTTGCAAAATGGTTAATGGAGCCATTCTTTGAGGAGTTGATTGTTGGATGCTTTGTGAGAGTCGGAATCGGGAGATCAAGATCTGGGCCTATCTACAGGCTCTGCTTGGTGCGCAATGTTGATGCAACAGAACCTGATCGTCAGTATAAACTCGAGAACAAAATCACGCATAAATATCTTAATGTTATTTGGGGAAATGAAAGTTCTGCTGCCAGATGGCAAATGGCTATGGTTTCGGACTCTGTTCCACTCGAGGATGAATATAAACAGTGGGTGAAGGAAGTAGAGCGAACGGGCGGTCGGATGCTGAGCAAGCAGGATATCTTGGAGAAGAAGGAAGCTATACAGAAAGCCAACAACTTTGTGTACTCAGCAGCCACAGTGAAGCAGATGTTGCAGGAGAAAAAATTTGCCTCATCAAGGCCATTAAATATTGCAGCTGAGAAGGACCGACTGAGGAATCAGATGGACGTAGCACTAAGCAAAAACAATGAAGCTGAGGTGGAGAGGATCAAGGCAAAACTGCGCCAATTAGACGCATCCAGGAGGTCACAAATGAAAGATGCCAAGGCTATTAGGTTATCTGAGATGAACAGGAAGAATAGGGTGGAAAACTTCAAGAATGCATCAGAACTAAGACCCACGAAAGATTTGAAAGCCGGTGAGGCTGGTTATGATCCCTTCTCTAGGAGATGGACGAGGTCGAGGAATTATTATGTTTCAAACGCTGGTCAAGTCGATGGGGCTGCCGAGGCAGCTGGCAACAGTGACAATATAACTCCTGCATCAGAGAGTACTGGAACAGGATCTGGAGAAGCTGGTGTGGCAGCTACCGCAGCAGCTTTGGAAGCTGCTGCTGGTGCTGGAAAGTTGGTCGATACTAACGCTCCAGTAGATGGAGGAACAGAATCGAACTTGCTGCACAACTTCGAGCTGCCTATATCATTGACTGTGCTTCAGAAATTTGGTGGTGCTCTGGGAGCTCAAGCTGGGTTCTTAGCAAGGAAACAAAGGATAGAAGCCACAGTTGGGCGTCAAGTCCCTGAGAATGATGGTAGGCGGCATGCACTGACACTCACTGTTAGCGACTACAAGAGAAGAAGAGGGCTTCTTTGA

Protein sequence

MKFLGREGKSRNHRFWYQRLQNMADLENLLLEAAGRTKASGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDERGYASRKPSGSQVPLKKRLDPNERDDDVGSPEEGEDEDVGSEHEGDSSDESDVGDDLYKDDDDRRKLAGMSELQREMILSDRASKKNDKHLYESLRSKMDKGKAAPSRKENPPLPSSRIRSSARSADRAAAKDDALNELRAKRLKQQDPEAHRKLRDTSRGNANNRRFSPTKRKPFTAPSLSSSSQSESESRFQSDDEGSTGDGGMIDSDDERTMPGSNGPTFDDIKEITIRRSKLAKWLMEPFFEELIVGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNESSAARWQMAMVSDSVPLEDEYKQWVKEVERTGGRMLSKQDILEKKEAIQKANNFVYSAATVKQMLQEKKFASSRPLNIAAEKDRLRNQMDVALSKNNEAEVERIKAKLRQLDASRRSQMKDAKAIRLSEMNRKNRVENFKNASELRPTKDLKAGEAGYDPFSRRWTRSRNYYVSNAGQVDGAAEAAGNSDNITPASESTGTGSGEAGVAATAAALEAAAGAGKLVDTNAPVDGGTESNLLHNFELPISLTVLQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL

Homology

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BLAST of CmaCh16G006620 vs. Swiss-Prot
Match: VIP5_ARATH (Protein RTF1 homolog OS=Arabidopsis thaliana GN=VIP5 PE=1 SV=1)

HSP 1 Score: 800.0 bits (2065), Expect = 1.9e-230
Identity = 456/659 (69.20%), Postives = 533/659 (80.88%), Query Frame = 1


Query: 23  MADLENLLLEAAGRTKASGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDERGYASRKPS 82
           M DLENLLLEAAGRT ++GR+RH  PPS R+REGSYSD  SDSRDD SD++RGYASRKPS
Sbjct: 1   MGDLENLLLEAAGRTNSAGRSRH--PPSSRRREGSYSDGSSDSRDD-SDEDRGYASRKPS 60

Query: 83  GSQVPLKKRLDPNERDDDVGSPEEGEDEDVGSEHEGDSSDESDVGDDLYKDDDDRRKLAG 142
           GSQVPLKKRL+  ER+D     E G   D  S+ EGDSS+ESD GDDLYK+++DR+KLAG
Sbjct: 61  GSQVPLKKRLEA-EREDRAARVEGGYG-DGPSDREGDSSEESDFGDDLYKNEEDRQKLAG 120

Query: 143 MSELQREMILSDRASKKNDKHLYESLRSKMDKGKAAPSRKENPPLPSSR-IRSSARSADR 202
           M+E QREMILS+RA KK DK+  E LRSK +  K   S+KE  PLP+SR +RSSARSADR
Sbjct: 121 MTEFQREMILSERADKKGDKNFTEKLRSKRESEKTPVSKKETQPLPASRGVRSSARSADR 180

Query: 203 AAAKDDALNELRAKRLKQQDPEAHRKLRDTSRGNANNRRFSPTKRKPFTAPSLSSSSQSE 262
           AAAKDDALNELRAKR+KQQDP A RKLRD S+G + +R FS TKRKP  + +LSSSSQS+
Sbjct: 181 AAAKDDALNELRAKRMKQQDPAALRKLRDASKGGSGSRDFSSTKRKPLASSNLSSSSQSD 240

Query: 263 SESRFQSDDEGSTGDGGMIDSDDERTMPGSNGPTFDDIKEITIRRSKLAKWLMEPFFEEL 322
           S+SR QSDDEGS  +GGM+DSDD+R    S+ PTF+D+KE+TIRRSKLAKWLMEPFFEEL
Sbjct: 241 SDSRSQSDDEGS--NGGMLDSDDDR----SDVPTFEDVKEVTIRRSKLAKWLMEPFFEEL 300

Query: 323 IVGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNESSAARW 382
           IVGCFVRVGIGRS+SGPIYRLC V+NVDAT+PD+ YKLENK THKYLNV+WGNE+SAARW
Sbjct: 301 IVGCFVRVGIGRSKSGPIYRLCWVKNVDATDPDKTYKLENKTTHKYLNVVWGNETSAARW 360

Query: 383 QMAMVSDSVPLEDEYKQWVKEVERTGGRMLSKQDILEKKEAIQKANNFVYSAATVKQMLQ 442
           QMAM+SD  PLE+EY+QW++EVERT GRM +KQDI EKKEAIQ+ N+FVYSA TVKQMLQ
Sbjct: 361 QMAMISDGHPLEEEYRQWIREVERTNGRMPTKQDISEKKEAIQRTNSFVYSAETVKQMLQ 420

Query: 443 EKKFASSRPLNIAAEKDRLRNQMDVALSKNNEAEVERIKAKLRQLDASRRSQMKDAKAIR 502
           EKK AS RP+N+AAEKDRLR ++++A SKN+EA VERIK+K++QLDASR  +  D KA++
Sbjct: 421 EKKSASVRPMNVAAEKDRLRKELEIAQSKNDEAGVERIKSKIKQLDASRNKKGVDKKALK 480

Query: 503 LSEMNRKNRVENFKNASELRP-TKDLKAGEAGYDPFSRRWTRSRNYYVSNAGQVDGAAEA 562
           L+EMN+KNR ENFKNASE++  T  LKAGEAGYDPFSRRWTRS NYY       DG    
Sbjct: 481 LAEMNKKNRAENFKNASEVKSITASLKAGEAGYDPFSRRWTRSSNYYNGKNKGKDGEENE 540

Query: 563 AGNSDNITPASESTGTGSGEAGVAATAAALEAAAGAGKLVDTNAPVDGGTESNLLHNFEL 622
           A     +  A E+ G  +G AGV AT AALEAAA AGKL+DT AP+  G E N LHNFEL
Sbjct: 541 AA----VAAAVETNGADAG-AGVEATEAALEAAAEAGKLIDTRAPIGQGAEHNQLHNFEL 600

Query: 623 PISLTVLQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL 680
            +SLT LQK+GG  G Q  F+ARKQ  EATVG +V ENDG+RH LTLTVSDYKRRRGLL
Sbjct: 601 SLSLTALQKYGGPQGVQKAFMARKQLTEATVGCRVAENDGKRHGLTLTVSDYKRRRGLL 643

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BLAST of CmaCh16G006620 vs. Swiss-Prot
Match: RTF1_HUMAN (RNA polymerase-associated protein RTF1 homolog OS=Homo sapiens GN=RTF1 PE=1 SV=4)

HSP 1 Score: 99.4 bits (246), Expect = 1.6e-19
Identity = 169/662 (25.53%), Postives = 286/662 (43.20%), Query Frame = 1


Query: 34  AGRTKASGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDERGYASRKPSGSQVPLKKRLD 93
           + + K  G+ R        +++ + + A S S D DS  E    S  P   +V       
Sbjct: 108 SNKNKKKGKARKIEKKGTMKKQANKT-ASSGSSDKDSSAE----SSAPEEGEVS------ 167

Query: 94  PNERDDDVGSPEEGEDEDVGSEHEGDSSDESDVGDDLYKDDDDRRKLAGMSELQREMILS 153
               D D  S     D D  SE   D       G+DL  D++DR +L  M+E +RE  L 
Sbjct: 168 ----DSDSNSSSSSSDSDSSSE---DEEFHDGYGEDLMGDEEDRARLEQMTEKEREQELF 227

Query: 154 DRASK----KNDKHLYESLRSKMDKGKAAPSRKENPPLPSSRIRSSARSADRAAAKDDAL 213
           +R  K    K    + + L++   K K    +K+       ++     S   +  K    
Sbjct: 228 NRIEKREVLKRRFEIKKKLKTAKKKEKKEKKKKQEEEQEKKKLTQIQESQVTSHNK---- 287

Query: 214 NELRAKRLKQQDP--EAHRKLRDTSRGNANNRRFSPTKRKPFTAPSLSSSSQSESESRFQ 273
            E R+KR ++ D   +A  +L+       N       K++P     + S  + E E    
Sbjct: 288 -ERRSKRDEKLDKKSQAMEELKAEREKRKNRTAELLAKKQPLKTSEVYSDDEEEEEDDKS 347

Query: 274 SDDEGSTGDGGMIDSDDERT-MPGSNGPTF--DDIKEITIRRSKLAKWLMEPFFEELIVG 333
           S+    +      D ++E+  +P  + P    +++  + + R KL +W   PFF + + G
Sbjct: 348 SEKSDRSSRTSSSDEEEEKEEIPPKSQPVSLPEELNRVRLSRHKLERWCHMPFFAKTVTG 407

Query: 334 CFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNESSAARWQMA 393
           CFVR+GIG   S P+YR+  +  V   E  + Y+L    T+K L +  GN+    R  + 
Sbjct: 408 CFVRIGIGNHNSKPVYRVAEITGV--VETAKVYQLGGTRTNKGLQLRHGNDQRVFR--LE 467

Query: 394 MVSDSVPLEDEYKQWVKEVERTGGRMLSKQDILEKKE-AIQKANNFVYSAATVKQMLQEK 453
            VS+    E E+ +W KE   + G  L   D + KKE +I++A N+ ++   ++++++EK
Sbjct: 468 FVSNQEFTESEFMKW-KEAMFSAGMQLPTLDEINKKELSIKEALNYKFNDQDIEEIVKEK 527

Query: 454 KFASSRPLNIAAEKDRLRNQMDVALSKNNEAEVERIKAKLRQL----DASRRSQMKDAKA 513
           +     P N A +K +L  +  +A    ++ + ++I+ +L +L    +A  R + K+  A
Sbjct: 528 ERFRKAPPNYAMKKTQLLKEKAMAEDLGDQDKAKQIQDQLNELEERAEALDRQRTKNISA 587

Query: 514 IRLSEMNRKNRVENFKNASELRPTKDLKAGEAGYDPFSRRWTRSRNYYVSNAGQVDGAAE 573
           I  S +N++NR  N   + +    +         DPF+RR  + +   VSN+   D A +
Sbjct: 588 I--SYINQRNREWNIVESEKALVAESHNMKNQQMDPFTRR--QCKPTIVSNSR--DPAVQ 647

Query: 574 AAGNSDNITPASESTGTGSGEAGVAATAAALEAAAGAGKLVDTNAPVDGGTESNL--LHN 633
           AA        A  +   GSG        A  E + G GK  D N+        +L  +H+
Sbjct: 648 AA------ILAQLNAKYGSG----VLPDAPKEMSKGQGKDKDLNSKSASDLSEDLFKVHD 707

Query: 634 FELPISLTVLQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYKRRRG 680
           F++ I L V      AL              A   +  P  DG     +L + DYK+RRG
Sbjct: 708 FDVKIDLQVPSSESKAL--------------AITSKAPPAKDGAPRR-SLNLEDYKKRRG 710

[Close]

BLAST of CmaCh16G006620 vs. Swiss-Prot
Match: RTF1_MOUSE (RNA polymerase-associated protein RTF1 homolog OS=Mus musculus GN=Rtf1 PE=1 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 2.8e-19
Identity = 175/692 (25.29%), Postives = 299/692 (43.21%), Query Frame = 1


Query: 25  DLENLLLEAAGRTKASGRNRH---SHPPSRRQREGSYSDAGSDSRDDDSDDERGYASRKP 84
           +L+  LL  A R ++    +    S P +    E S SD   D     S+  +     + 
Sbjct: 68  NLDQELLSLAKRKRSDSEEKEPPVSQPAASSDSETSDSD---DEWTFGSNKNKKKGKTRK 127

Query: 85  SGSQVPLKKRLDP------NERDDDVGS--PEEGEDEDVGSEHEGDSSDESD-------- 144
              +  +KK+ +       ++RD    S  PEEGE  D  S     SSD           
Sbjct: 128 VEKKGAMKKQANKAASSGSSDRDSSAESSAPEEGEVSDSESSSSSSSSDSDSSSEDEEFH 187

Query: 145 --VGDDLYKDDDDRRKLAGMSELQREMILSDRASK----KNDKHLYESLRSKMDKGKAAP 204
              G+DL  D++DR +L  M+E +RE  L +R  K    K    + + L++   K K   
Sbjct: 188 DGYGEDLMGDEEDRARLEQMTEKEREQELFNRIEKREVLKRRFEIKKKLKTAKKKEKKEK 247

Query: 205 SRKENPPLPSSRIRSSARSADRAAAKDDALNELRAKRLKQQDP--EAHRKLRDTSRGNAN 264
            +K+       ++     S   +  K     E R+KR ++ D   +A  +L+       N
Sbjct: 248 KKKQEEEQEKKKLTQIQESQVTSHNK-----ERRSKRDEKLDKKSQAMEELKAEREKRKN 307

Query: 265 NRRFSPTKRKPFTAPSLSSSSQSESESRFQSDDEGSTGDGGMIDSDDERT-MPGSNGPTF 324
                  K++P     + S  + E +    S+    +      D ++E+  +P  + P  
Sbjct: 308 RTAELLAKKQPLKTSEVYSDDEEEEDDDKSSEKSDRSSRTSSSDEEEEKEEIPPKSQPVS 367

Query: 325 --DDIKEITIRRSKLAKWLMEPFFEELIVGCFVRVGIGRSRSGPIYRLCLVRNVDATEPD 384
             +++  + + R KL +W   PFF + + GCFVR+GIG   S P+YR+  +  V   E  
Sbjct: 368 LPEELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNSKPVYRVAEITGV--VETA 427

Query: 385 RQYKLENKITHKYLNVIWGNESSAARWQMAMVSDSVPLEDEYKQWVKEVERTGGRMLSKQ 444
           + Y+L    T+K L +  GN+    R  +  VS+    E E+ +W KE   + G  L   
Sbjct: 428 KVYQLGGTRTNKGLQLRHGNDQRVFR--LEFVSNQEFTESEFMKW-KEAMFSAGMQLPTL 487

Query: 445 DILEKKE-AIQKANNFVYSAATVKQMLQEKKFASSRPLNIAAEKDRLRNQMDVALSKNNE 504
           D + KKE +I++A N+ ++   ++++++EK+     P N A +K +L  +  +A    ++
Sbjct: 488 DEINKKELSIKEALNYKFNDQDIEEIVKEKERFRKAPPNYAMKKTQLLKEKAMAEDLGDQ 547

Query: 505 AEVERIKAKLRQL----DASRRSQMKDAKAIRLSEMNRKNRVENFKNASELRPTKDLKAG 564
            + ++I+ +L +L    +A  R + K+  AI  S +N++NR  N   + +    +     
Sbjct: 548 DKAKQIQDQLNELEERAEALDRQRTKNISAI--SYINQRNREWNIVESEKALVAESHNMR 607

Query: 565 EAGYDPFSRRWTRSRNYYVSNAGQVDGAAEAAGNSDNITPASESTGTGSGEAGVAATAAA 624
               DPF+RR  + +   VSN+   D A +AA        A  +   GSG        A 
Sbjct: 608 NQQMDPFTRR--QCKPTIVSNSR--DPAVQAA------ILAQLNAKYGSG----VLPDAP 667

Query: 625 LEAAAGAGKLVDTNAPVDGGTESNL--LHNFELPISLTVLQKFGGALGAQAGFLARKQRI 680
            E + G GK  D N+        +L  +H+F++ I L V      AL             
Sbjct: 668 KEMSKGQGKDKDLNSKTASDLSEDLFKVHDFDVKIDLQVPSSESKAL------------- 715

[Close]

BLAST of CmaCh16G006620 vs. Swiss-Prot
Match: RTF1_PONAB (RNA polymerase-associated protein RTF1 homolog (Fragment) OS=Pongo abelii GN=RTF1 PE=2 SV=2)

HSP 1 Score: 87.4 bits (215), Expect = 6.4e-16
Identity = 154/607 (25.37%), Postives = 266/607 (43.82%), Query Frame = 1


Query: 34  AGRTKASGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDERGYASRKPSGSQVPLKKRLD 93
           + + K  G+ R        +++ + + A S S D DS  E    S  P   +V       
Sbjct: 103 SNKNKKKGKARKIEKKGTMKKQANKT-ASSGSSDKDSSAE----SSAPEEGEVS------ 162

Query: 94  PNERDDDVGSPEEGEDEDVGSEHEGDSSDESDVGDDLYKDDDDRRKLAGMSELQREMILS 153
               D D  S     D D  SE   D       G+DL  D++DR +L  M+E +RE  L 
Sbjct: 163 ----DSDSNSSSSSSDSDSSSE---DEEFHDGYGEDLMGDEEDRARLEQMTEKEREQELF 222

Query: 154 DRASK----KNDKHLYESLRSKMDKGKAAPSRKENPPLPSSRIRSSARSADRAAAKDDAL 213
           +R  K    K    + + L++   K K    +K+       ++     S   +  K    
Sbjct: 223 NRIEKREVLKRRFEIKKKLKTAKKKEKKEKKKKQEEEQEKKKLTQIQESQVTSHNK---- 282

Query: 214 NELRAKRLKQQDP--EAHRKLRDTSRGNANNRRFSPTKRKPFTAPSLSSSSQSESESRFQ 273
            E R+KR ++ D   +A  +L+       N       K++P     + S  + E E    
Sbjct: 283 -ERRSKRDEKLDKKSQAMEELKAEREKRKNRTVELLAKKQPLKTSEVYSDDEEEEEDDKS 342

Query: 274 SDDEGSTGDGGMIDSDDERT-MPGSNGPTF--DDIKEITIRRSKLAKWLMEPFFEELIVG 333
           S+    +      D ++E+  +P  + P    +++  + + R KL +W   PFF + + G
Sbjct: 343 SEKSDRSSRTSSSDEEEEKEEIPPKSQPVSLPEELNRVRLSRHKLERWCHMPFFAKTVTG 402

Query: 334 CFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNESSAARWQMA 393
           CFVR+GIG   S P+YR+  +  V   E  + Y+L    T+K L +  GN+    R  + 
Sbjct: 403 CFVRIGIGNHNSKPVYRVAEITGV--VETAKVYQLGGTRTNKGLQLRHGNDQRVFR--LE 462

Query: 394 MVSDSVPLEDEYKQWVKEVERTGGRMLSKQDILEKKE-AIQKANNFVYSAATVKQMLQEK 453
            VS+    E E+ +W KE   + G  L   D + KKE +I++A N+ ++   ++++++EK
Sbjct: 463 FVSNQEFTESEFMKW-KEAMFSAGMQLPTLDEINKKELSIKEALNYKFNDQDIEEIVKEK 522

Query: 454 KFASSRPLNIAAEKDRLRNQMDVALSKNNEAEVERIKAKLRQL----DASRRSQMKDAKA 513
           +     P N A +K +L  +  +A    ++ + ++I+ +L +L    +A  R + K+  A
Sbjct: 523 ERFRKAPPNYAMKKTQLLKEKAMAEDLGDQDKAKQIQDQLNELEERAEALDRQRTKNISA 582

Query: 514 IRLSEMNRKNRVENFKNASELRPTKDLKAGEAGYDPFSRRWTRSRNYYVSNAGQVDGAAE 573
           I  S +N++NR  N   + +    +         DPF+RR  + +   VSN+   D A +
Sbjct: 583 I--SYINQRNREWNIVESEKALVAESHNMKNQQMDPFTRR--QCKPTIVSNSR--DPAVQ 642

Query: 574 AAGNSDNITPASESTGTGSGEAGVAATAAALEAAAGAGKLVDTNAPVDGGTESNL--LHN 625
           AA        A  +   GSG        A  E + G GK  D N+        +L  +H+
Sbjct: 643 AA------ILAQLNAKYGSG----VLPDAPKEMSKGQGKDKDLNSKSASDLSEDLFKVHD 665

[Close]

BLAST of CmaCh16G006620 vs. Swiss-Prot
Match: RTF1_CAEEL (RNA polymerase-associated protein RTF1 homolog OS=Caenorhabditis elegans GN=rtfo-1 PE=2 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.8e-13
Identity = 144/599 (24.04%), Postives = 259/599 (43.24%), Query Frame = 1


Query: 67  DDDSDDERGYASRKPSGSQVPLKKRLDPNERDDDVGSPE----EGEDEDVGSEHEGDSSD 126
           D DSD + G    KP  +        D +  D D   P+    + +           SSD
Sbjct: 22  DSDSDSDAGPKPGKPLST--------DSSASDSDAEKPQAKPAKKKTLTKRKRRATGSSD 81

Query: 127 ESDVGDDLYKDDDDRRKLAGMSELQREMILSDR--------------------ASKKNDK 186
           +  V DDL+ D +D+ +   ++EL++E  + +R                    A K ++K
Sbjct: 82  DDQVDDDLFADKEDKARWKKLTELEKEQEIFERMEARENAIAREEIAQQLAKKAKKSSEK 141

Query: 187 HLYESLRSKMDKGKA---APSRKENPPLPSSRIRSSARSAD--RAAAKDDALNELRAKRL 246
            +    R KM+ G +   +P RK +    S    +  R +D  R   + +A++ L+ KR 
Sbjct: 142 GVKTEKRRKMNSGGSDAGSPKRKASSDSDSEMDAAFHRPSDINRKHKEKNAMDALKNKR- 201

Query: 247 KQQDPEAHRKLRDTSRGNANNRRFSPTKRKPFTAPSLSSSSQSESESRFQSDDEGSTGDG 306
                      ++  + NA N   S        + S SSSS SES     S  E S    
Sbjct: 202 -----------KEIEKKNAKNEALSIDAVFGANSGSSSSSSSSESSRSSSSSRESSPERV 261

Query: 307 GMIDSDDERTMPGSNGPTFDDIKEITIRRSKLAKWLMEPFFEELIVGCFVRVGIGR-SRS 366
              D   ++ + G       +++   + R KL+  +  PFF+  +VGC+VR+G G+ S S
Sbjct: 262 SEKDKIVKKDVDG-----LSELRRARLSRHKLSLMIHAPFFDSTVVGCYVRLGQGQMSGS 321

Query: 367 GPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNESSAARWQMAMVSDSVPLEDEY 426
           G  YR+  +  V+  E ++ Y+LE K T+K +     N  S   ++M  VS++   + E+
Sbjct: 322 GSKYRIWKIVGVE--ESNKVYELEGKKTNKIIKC--QNGGSERPFRMQFVSNADFEQIEF 381

Query: 427 KQWVKEVERTGGRMLSKQDILEKKEA-IQKANNFVYSAATVKQMLQEKKFASSRPLNIAA 486
            +W+   +R G   L   DI++KK+  I+KA N  YS   V  M++EK    + P N A 
Sbjct: 382 DEWLLACKRHGN--LPTVDIMDKKKQDIEKAINHKYSDKEVDLMIKEKSKYQTVPRNFAM 441

Query: 487 EKDRLRNQMDVALSKNNEAEVERIKAKL----RQLDASRRSQMKDAKAIRLSEMNRKNRV 546
            K     Q ++A  + +  E E+I+ K+    RQ D   + + K   AI       ++++
Sbjct: 442 TKANWSKQKELAQQRGDIREAEQIQTKIDEIERQADELEKERSKSISAIAFINHRNRSKI 501

Query: 547 ENFKNASELRPTKDLKAGEAGYDPFSRRWTRSRNYYVSNAGQVDGAAEAAGNSDNITPAS 606
           ++   + +L+  ++ +      DPF+R+    R     +  ++DG   A+ ++ N++   
Sbjct: 502 KDQVLSGQLKIEENSQD-----DPFTRKKGGMR-VVSGSKSRLDGTLSASSSTTNLSDGG 561

Query: 607 ESTGTGSGEAGVAATAAALEAAAGAGKLVDTNAPVDGGTESNLLHNFELPISLTVLQKF 631
           +   +   +      +  ++                  T+ + LH+F+L I L  L+ F
Sbjct: 562 KDKSSSLAKPTQPPPSTQIKKK----------------TDISSLHDFDLDIDLGKLKDF 567

[Close]

BLAST of CmaCh16G006620 vs. TrEMBL
Match: A0A0A0KXW1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G038650 PE=4 SV=1)

HSP 1 Score: 1139.4 bits (2946), Expect = 0.0e+00
Identity = 609/660 (92.27%), Postives = 637/660 (96.52%), Query Frame = 1


Query: 23  MADLENLLLEAAGRTKASGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDERGYASRKPS 82
           MADLENLLLEAAGRT A+GRNRHSHPPSRRQREGSYSDAGSDSRDDDSDD+RGYASRKPS
Sbjct: 1   MADLENLLLEAAGRTNAAGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDDRGYASRKPS 60

Query: 83  GSQVPLKKRLDPNERDDDVGSPEEGEDEDVGSEHEGDSSDESDVGDDLYKDDDDRRKLAG 142
           GSQVPLKKRLDP ERDDD GS EEGEDEDVGSE EGDSSDESDVGDDLYKDDDDRRKLAG
Sbjct: 61  GSQVPLKKRLDPTERDDDGGSQEEGEDEDVGSEREGDSSDESDVGDDLYKDDDDRRKLAG 120

Query: 143 MSELQREMILSDRASKKNDKHLYESLRSKMDKGKAAPSRKENPPLPSSRIRSSARSADRA 202
           MSELQREMILSDRASKKNDKHLYESLR+KMDKGK+APSRKE PPLPSSRIRSSARSADRA
Sbjct: 121 MSELQREMILSDRASKKNDKHLYESLRAKMDKGKSAPSRKETPPLPSSRIRSSARSADRA 180

Query: 203 AAKDDALNELRAKRLKQQDPEAHRKLRDTSRGNANNRRFSPTKRKPFTAPSLSSSSQSES 262
           AAKDDALNELRAKRLKQQDPEAHRKLRD SRGNAN+RRFSPTKRKPFTAPSLSSSSQSES
Sbjct: 181 AAKDDALNELRAKRLKQQDPEAHRKLRDASRGNANSRRFSPTKRKPFTAPSLSSSSQSES 240

Query: 263 ESRFQSDDEGSTGDGGMIDSDDERTMPGSNGPTFDDIKEITIRRSKLAKWLMEPFFEELI 322
           ESRFQSDDEGSTGDGGMIDSDDER++PGS+GPTF+DIKE+TIRRSKLAKWLMEPFFEELI
Sbjct: 241 ESRFQSDDEGSTGDGGMIDSDDERSIPGSDGPTFEDIKEVTIRRSKLAKWLMEPFFEELI 300

Query: 323 VGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNESSAARWQ 382
           VGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNE+SAARWQ
Sbjct: 301 VGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNEASAARWQ 360

Query: 383 MAMVSDSVPLEDEYKQWVKEVERTGGRMLSKQDILEKKEAIQKANNFVYSAATVKQMLQE 442
           MAMVSDS PLEDEYKQWVKEVERTGGRMLSKQDILEKKEAIQK NNFVYSAATVKQMLQ+
Sbjct: 361 MAMVSDSAPLEDEYKQWVKEVERTGGRMLSKQDILEKKEAIQKVNNFVYSAATVKQMLQD 420

Query: 443 KKFASSRPLNIAAEKDRLRNQMDVALSKNNEAEVERIKAKLRQLDASRRSQMKDAKAIRL 502
           KK AS+RPLNIAAEKDRLR +MDVA+SKN+EAEVERIK +L+QL+ASRR QMKDAKAIRL
Sbjct: 421 KKSASARPLNIAAEKDRLRREMDVAVSKNDEAEVERIKTRLQQLEASRRLQMKDAKAIRL 480

Query: 503 SEMNRKNRVENFKNASELRPTKDLKAGEAGYDPFSRRWTRSRNYYVSNAGQVDGAAEAAG 562
           +EMNRKNRVENFKNASELRP KDLKAGEAGYDPFSRRWTRSRNYYVSNAG+ +GAAEAAG
Sbjct: 481 AEMNRKNRVENFKNASELRPLKDLKAGEAGYDPFSRRWTRSRNYYVSNAGEANGAAEAAG 540

Query: 563 NSDNITPASESTGT---GSGEAGVAATAAALEAAAGAGKLVDTNAPVDGGTESNLLHNFE 622
           NSDN+TPA E+T T   G+ +AG+AATAAALEAAAGAGKLVDTNAPVDGGTESN LHNFE
Sbjct: 541 NSDNVTPALENTRTEAGGTSDAGMAATAAALEAAAGAGKLVDTNAPVDGGTESNSLHNFE 600

Query: 623 LPISLTVLQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL 680
           LPISL +LQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL
Sbjct: 601 LPISLAMLQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL 660

[Close]

BLAST of CmaCh16G006620 vs. TrEMBL
Match: W9RDA9_9ROSA (RNA polymerase-associated protein RTF1-like protein OS=Morus notabilis GN=L484_012115 PE=4 SV=1)

HSP 1 Score: 927.5 bits (2396), Expect = 9.0e-267
Identity = 516/662 (77.95%), Postives = 577/662 (87.16%), Query Frame = 1


Query: 23  MADLENLLLEAAGRTKASGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDERGYASRKPS 82
           MA+LENLLLEAAGRT+++GRNRHS PPSRR+REGSYSD GSDSRDDDSDD+RGYA+RKPS
Sbjct: 1   MAELENLLLEAAGRTRSAGRNRHSIPPSRRRREGSYSDGGSDSRDDDSDDDRGYANRKPS 60

Query: 83  GSQVPLKKRLDPNERDDDVGSPEEGEDEDVGSEHEGDSSDESDVGDDLYKDDDDRRKLAG 142
           GSQVPLKKRLDP E DDD GS EEG+D D GS+ EGDS  ESDVG DLYKDDDDRRKLA 
Sbjct: 61  GSQVPLKKRLDPTEMDDDQGSEEEGDD-DRGSDREGDS--ESDVGSDLYKDDDDRRKLAE 120

Query: 143 MSELQREMILSDRASKKNDKHLYESLRSKMD-KGKAAPSRKENPPLPSSRIRSSARSADR 202
           M+ELQREMIL DRASKK DK+L E LR K D KGKA  SRKE  PLPSSR+RSSARSADR
Sbjct: 121 MTELQREMILLDRASKKEDKNLKEKLRPKWDNKGKATQSRKET-PLPSSRVRSSARSADR 180

Query: 203 AAAKDDALNELRAKRLKQQDPEAHRKLRDTSRGNANNRRFSPTKRKPFTAPSLSSSSQSE 262
           AAAKDDALNELRAKRLKQQDPEAH KLRD SRG + +R     KRK +TA SLSSSSQS+
Sbjct: 181 AAAKDDALNELRAKRLKQQDPEAHGKLRDASRGGSGSRNLLHNKRKSYTATSLSSSSQSD 240

Query: 263 SESRFQSDDEGSTGDGGMIDSDDERTMPGSNGPTFDDIKEITIRRSKLAKWLMEPFFEEL 322
           SES  QS+DEGSTGDGGMIDSDDER +PGS G TFDDIKE+T+RRSKLAKWLMEPFFEEL
Sbjct: 241 SESESQSEDEGSTGDGGMIDSDDERGIPGSEGLTFDDIKEVTVRRSKLAKWLMEPFFEEL 300

Query: 323 IVGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNESSAARW 382
           IVGCFVRVGIGRS+SGPIYRLC+VRNVDA+EPDRQYKL+NKITHKYLNV+WGNE+SAARW
Sbjct: 301 IVGCFVRVGIGRSKSGPIYRLCMVRNVDASEPDRQYKLDNKITHKYLNVVWGNENSAARW 360

Query: 383 QMAMVSDSVPLEDEYKQWVKEVERTGGRMLSKQDILEKKEAIQKANNFVYSAATVKQMLQ 442
           QMAMVSDSVP E+E+KQWV+EVER+GGRM +K DIL+KKE+I+K N FVYSAATVKQMLQ
Sbjct: 361 QMAMVSDSVPNEEEFKQWVREVERSGGRMPTKHDILDKKESIKKINTFVYSAATVKQMLQ 420

Query: 443 EKKFASSRPLNIAAEKDRLRNQMDVALSKNNEAEVERIKAKLRQLDASRRSQMKDAKAIR 502
           EKK AS+RPLNIA EKDRLR +++VA SKN+E EV+RIK +L++L+ASR+++  DAKAIR
Sbjct: 421 EKKSASARPLNIALEKDRLRRELEVAQSKNDEVEVDRIKTRLQELEASRKAKQTDAKAIR 480

Query: 503 LSEMNRKNRVENFKNASELRPTK-DLKAGEAGYDPFSRRWTRSRNYYVSNAGQV-DGAAE 562
           L+EMNRKNRVENFKNASEL+P    LKAGEAGYDPFSRRWTRSRNYYV   G+V + +  
Sbjct: 481 LAEMNRKNRVENFKNASELKPVNTGLKAGEAGYDPFSRRWTRSRNYYVGKPGEVKEDSGA 540

Query: 563 AAGNSDNITPASES--TGTGSGEAGVAATAAALEAAAGAGKLVDTNAPVDGGTESNLLHN 622
            AGN+   T A  +   G  + EAG+AAT AALEAAA AGKLVDTNAPVD GT SN+LHN
Sbjct: 541 NAGNNGASTDAENNGRHGIVAAEAGIAATEAALEAAADAGKLVDTNAPVDQGTVSNMLHN 600

Query: 623 FELPISLTVLQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYKRRRG 680
           FELPISL+VLQKFGG  GAQAGF+ARKQRIEATVG +VPENDGRRHALTL+V DYKRRRG
Sbjct: 601 FELPISLSVLQKFGGPQGAQAGFMARKQRIEATVGCRVPENDGRRHALTLSVGDYKRRRG 658

[Close]

BLAST of CmaCh16G006620 vs. TrEMBL
Match: A0A067JDU6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21409 PE=4 SV=1)

HSP 1 Score: 926.4 bits (2393), Expect = 2.0e-266
Identity = 513/660 (77.73%), Postives = 576/660 (87.27%), Query Frame = 1


Query: 23  MADLENLLLEAAGRTKASGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDERGYASRKPS 82
           MADLENLLLEAAGRT +SGRNR++HPPSRR+REGSYSD GSDSRD+DSDD+RGYASRKPS
Sbjct: 1   MADLENLLLEAAGRTGSSGRNRNAHPPSRRRREGSYSDGGSDSRDEDSDDDRGYASRKPS 60

Query: 83  GSQVPLKKRLDPNERDDDVGSPEEGEDEDVGSEHEGDSSDESDVGDDLYKDDDDRRKLAG 142
           GSQVPLKKRLDP ERDDD GS EEG  +D  S+ EGDSSDESDVGDDLYKD+DDRRKLA 
Sbjct: 61  GSQVPLKKRLDPAERDDDQGSQEEGGYDDGASDREGDSSDESDVGDDLYKDEDDRRKLAQ 120

Query: 143 MSELQREMILSDRASKKNDKHLYESLRSKMDKGKAAPSRKENPPLPSSR-IRSSARSADR 202
           MSEL+REMILS+RA KK DK+L E +RSK D  +A  SRKE PPLPSSR +R+SARSADR
Sbjct: 121 MSELEREMILSERADKKGDKNLTERIRSKRDSERATRSRKETPPLPSSRGVRTSARSADR 180

Query: 203 AAAKDDALNELRAKRLKQQDPEAHRKLRDTSRGNANNRRFSPTKRKPFTAPSLSSSSQSE 262
           AAAKDDALNELRAKRLKQQDPEAHRKLRD SRG + +R  SP +RK FT+ SLSSSS SE
Sbjct: 181 AAAKDDALNELRAKRLKQQDPEAHRKLRDVSRGTSGSRGVSPVRRKRFTSASLSSSS-SE 240

Query: 263 SESRFQSDDEGSTGDGGMIDSDDERTMPGSNGPTFDDIKEITIRRSKLAKWLMEPFFEEL 322
           S+SR  S+DE STGDGGM DSD++R  PGS G T+DDI+E+TIRRSKLAKWLMEP+FEEL
Sbjct: 241 SDSRSHSEDEASTGDGGMADSDEDRE-PGSEGLTYDDIREVTIRRSKLAKWLMEPWFEEL 300

Query: 323 IVGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNESSAARW 382
           IVGCFVRVGIGRS+SGPIYRLCLVRNVDA +PDR YKLENK T+KYLNVIWGNESSAARW
Sbjct: 301 IVGCFVRVGIGRSKSGPIYRLCLVRNVDAADPDRPYKLENKTTYKYLNVIWGNESSAARW 360

Query: 383 QMAMVSDSVPLEDEYKQWVKEVERTGGRMLSKQDILEKKEAIQKANNFVYSAATVKQMLQ 442
           QMAMVSDS P EDEYKQWV+EVER+GGRM +KQDILEKKEAI+K+N FVYSAATVKQMLQ
Sbjct: 361 QMAMVSDSAPTEDEYKQWVREVERSGGRMPTKQDILEKKEAIKKSNTFVYSAATVKQMLQ 420

Query: 443 EKKFASSRPLNIAAEKDRLRNQMDVALSKNNEAEVERIKAKLRQLDASRRSQMKDAKAIR 502
           EKK AS+RPLN+AAEKDRLR +++VA  K ++AEVERI+A++++L+ASR++Q KDAKAIR
Sbjct: 421 EKKSASTRPLNVAAEKDRLRRELEVAQMKQDDAEVERIRARIQELEASRQAQEKDAKAIR 480

Query: 503 LSEMNRKNRVENFKNASELRPTK-DLKAGEAGYDPFSRRWTRSRNYYVSNAGQVDGAAEA 562
           L+EMNRKNR ENF+NASEL+P    LKAGEAGYDPFSRRWTRSRNYYVS  G  D AAEA
Sbjct: 481 LAEMNRKNRAENFRNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVSKPGGADVAAEA 540

Query: 563 AGNSDNITPASESTGTGS-GEAGVAATAAALEAAAGAGKLVDTNAPVDGGTESNLLHNFE 622
             N       S    TG+  EAG+AATAAALEAAA AGKLVDT APVD GTESN LH+F+
Sbjct: 541 NNNGTAAVAHSNGAATGTLAEAGMAATAAALEAAADAGKLVDTAAPVDQGTESNTLHDFD 600

Query: 623 LPISLTVLQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL 680
           LPISLT L+KFGGA GA+AGF+ARKQ+IEATVG +VPENDGRRHALTLTVSDYKRRRGLL
Sbjct: 601 LPISLTALEKFGGAKGAKAGFMARKQQIEATVGCRVPENDGRRHALTLTVSDYKRRRGLL 658

[Close]

BLAST of CmaCh16G006620 vs. TrEMBL
Match: A0A061GFX4_THECC (PAF1 complex component isoform 1 OS=Theobroma cacao GN=TCM_029914 PE=4 SV=1)

HSP 1 Score: 924.1 bits (2387), Expect = 9.9e-266
Identity = 507/662 (76.59%), Postives = 570/662 (86.10%), Query Frame = 1


Query: 23  MADLENLLLEAAGRTKASGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDERGYASRKPS 82
           MADLENLLLEAAGRT   GRNRHS PPSRR+REGSYSD GSDSRDDDSDD+ GYASRKPS
Sbjct: 1   MADLENLLLEAAGRTGTGGRNRHSLPPSRRRREGSYSDGGSDSRDDDSDDDHGYASRKPS 60

Query: 83  GSQVPLKKRLDPNERDDDVGSPEEGEDEDVGSEHEGDSSDESDVGDDLYKDDDDRRKLAG 142
           GSQVPLKKRLDP ERDDD GS EEG+ +D  S HEGDSSDESDVGDDLYK++DDRRKLA 
Sbjct: 61  GSQVPLKKRLDPAERDDDQGSQEEGDYDDGVSVHEGDSSDESDVGDDLYKNEDDRRKLAQ 120

Query: 143 MSELQREMILSDRASKKNDKHLYESLRSKMDKGKAAPSRKENPPLPSSR-IRSSARSADR 202
           M+EL+RE+ILS+RA K+ DK   E +RSK +  + + SRKE PPLPSSR +RSSARSADR
Sbjct: 121 MTELERELILSERADKRGDKKFTEKIRSKRENDRPSRSRKETPPLPSSRGVRSSARSADR 180

Query: 203 AAAKDDALNELRAKRLKQQDPEAHRKLRDTSRGNANNRRFSPTKRKPFTAPSLSSSSQSE 262
           AAAKDDALNELRAKRLKQQDPEAHRKLRD SRG++ +R  SP KRKPFTA SLSSSSQS+
Sbjct: 181 AAAKDDALNELRAKRLKQQDPEAHRKLRDASRGSSGSRGLSPVKRKPFTASSLSSSSQSD 240

Query: 263 SESRFQSDDEGSTGDGGMIDSDDERTMPGSNGPTFDDIKEITIRRSKLAKWLMEPFFEEL 322
           SESR  S+DEGSTGDGGM+DSDD+R M G +GPTFDDIKEITIRRSKLAKW MEPFFEEL
Sbjct: 241 SESRSNSEDEGSTGDGGMVDSDDDRGMQGPDGPTFDDIKEITIRRSKLAKWFMEPFFEEL 300

Query: 323 IVGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNESSAARW 382
           IVGC+VRVGIGRS+SGPIYRLC+VRNVDATEP+R YKLENK T+KYLNV+WGNESSAARW
Sbjct: 301 IVGCYVRVGIGRSKSGPIYRLCMVRNVDATEPERTYKLENKTTYKYLNVVWGNESSAARW 360

Query: 383 QMAMVSDSVPLEDEYKQWVKEVERTGGRMLSKQDILEKKEAIQKANNFVYSAATVKQMLQ 442
           QMAM+SDS P E+E++Q ++E+ER+GGRM SKQD+LEKKEA+QKA  FVYSAATVKQMLQ
Sbjct: 361 QMAMISDSPPQEEEFRQLIRELERSGGRMPSKQDVLEKKEALQKAKTFVYSAATVKQMLQ 420

Query: 443 EKKFASSRPLNIAAEKDRLRNQMDVALSKNNEAEVERIKAKLRQLDASRRSQMKDAKAIR 502
           EKK  SSRPLNIAAEKDRLR  +++A SK++EAEVERIK +L+QL+ASR++Q KDAKA+R
Sbjct: 421 EKKSTSSRPLNIAAEKDRLRRDLEIAQSKHDEAEVERIKMRLQQLEASRQAQEKDAKAVR 480

Query: 503 LSEMNRKNRVENFKNASELRPTK-DLKAGEAGYDPFSRRWTRSRNYYVSNAGQVDGAAEA 562
           L+EMNRKNR ENFKNASEL+P    LKAGEAGYDPFSRRWTRSRNYYV+     D AA A
Sbjct: 481 LAEMNRKNRAENFKNASELKPVNTGLKAGEAGYDPFSRRWTRSRNYYVAKPPGADAAAVA 540

Query: 563 AGNSDNITPASESTGT---GSGEAGVAATAAALEAAAGAGKLVDTNAPVDGGTESNLLHN 622
             N D I   +   G     + EAG AAT AAL+ AAGAGKLVDT+APVD GTESN+LH+
Sbjct: 541 --NGDRIGVIASGNGNDARAAAEAGRAATVAALQEAAGAGKLVDTSAPVDEGTESNMLHD 600

Query: 623 FELPISLTVLQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYKRRRG 680
           FE+PISL  LQ+FGG  GA AGF+ARKQRIEATVG QVPENDGRRHALTLTVSDYKRRRG
Sbjct: 601 FEIPISLNALQRFGGPQGAVAGFMARKQRIEATVGCQVPENDGRRHALTLTVSDYKRRRG 660

[Close]

BLAST of CmaCh16G006620 vs. TrEMBL
Match: A0A0D2T1B1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G025800 PE=4 SV=1)

HSP 1 Score: 917.1 bits (2369), Expect = 1.2e-263
Identity = 502/660 (76.06%), Postives = 569/660 (86.21%), Query Frame = 1


Query: 23  MADLENLLLEAAGRTKASGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDERGYASRKPS 82
           MADLENLLLEAAGRT   GRNRHS PPSRR+REGSYSD GSDSRDDDSDD+ GYASRKPS
Sbjct: 1   MADLENLLLEAAGRTGTGGRNRHSLPPSRRRREGSYSDGGSDSRDDDSDDDHGYASRKPS 60

Query: 83  GSQVPLKKRLDPNERDDDVGSPEEGEDEDVGSEHEGDSSDESDVGDDLYKDDDDRRKLAG 142
           GSQVPLKKRLDP ERDDD GS EEG+  D GS  E DSSDESDVGDDLYK+++DRR+LA 
Sbjct: 61  GSQVPLKKRLDPAERDDDQGSQEEGDYNDAGSGRERDSSDESDVGDDLYKNEEDRRQLAQ 120

Query: 143 MSELQREMILSDRASKKNDKHLYESLRSKMDKGKAAPSRKENPPLPSSRIRSSARSADRA 202
           ++EL+REMILS+RA K+ DK   E +RSK +  + + S++E PPLPS  +RSSARSADRA
Sbjct: 121 LTELEREMILSERADKRGDKKFTEKIRSKRENDRPSRSQRETPPLPSRGVRSSARSADRA 180

Query: 203 AAKDDALNELRAKRLKQQDPEAHRKLRDTSRGNANNRRFSPTKRKPFTAPSLSSSSQSES 262
           AAKDDALNELRAKRLKQQDPEAHRKLRD SRG++ NR  SP KRKPFTA SLSSSSQSES
Sbjct: 181 AAKDDALNELRAKRLKQQDPEAHRKLRDASRGSSGNRGLSPVKRKPFTASSLSSSSQSES 240

Query: 263 ESRFQSDDEGSTGDGGMIDSDDERTMPGSNGPTFDDIKEITIRRSKLAKWLMEPFFEELI 322
           ESR  S+DEGSTGDGGM+DS+DER   G NGPTF+DIKEITIRRSKLAKWLMEPFFEELI
Sbjct: 241 ESRSNSEDEGSTGDGGMVDSEDERGTWGPNGPTFNDIKEITIRRSKLAKWLMEPFFEELI 300

Query: 323 VGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNESSAARWQ 382
           VGCFVRVGIGRS++G IYRLC+VRNVDAT+PDR YKLENK T+KYLNV+WGNESSAARWQ
Sbjct: 301 VGCFVRVGIGRSKTGAIYRLCMVRNVDATDPDRTYKLENKTTYKYLNVVWGNESSAARWQ 360

Query: 383 MAMVSDSVPLEDEYKQWVKEVERTGGRMLSKQDILEKKEAIQKANNFVYSAATVKQMLQE 442
           MAM+SDS PLE+E++Q ++EVER+GGRM SKQD+LEKKEA+QKA  FVYSAATVKQMLQE
Sbjct: 361 MAMISDSPPLEEEFRQLIREVERSGGRMPSKQDVLEKKEALQKAKTFVYSAATVKQMLQE 420

Query: 443 KKFASSRPLNIAAEKDRLRNQMDVALSKNNEAEVERIKAKLRQLDASRRSQMKDAKAIRL 502
           KK +SSRPLN+AAEKDRLR  +++A SK+++ EVERIK +L+QL+ASR+SQ KDAKA+RL
Sbjct: 421 KKSSSSRPLNVAAEKDRLRRDLEIAQSKHDDVEVERIKKRLQQLEASRQSQEKDAKAVRL 480

Query: 503 SEMNRKNRVENFKNASELRPTK-DLKAGEAGYDPFSRRWTRSRNYYVSNAGQVDGAAEAA 562
           +EMNRKNRVENFKNAS L+P    LKAGEAGYDPFSRRWTRSRNYY + A   D AA A 
Sbjct: 481 AEMNRKNRVENFKNASGLKPVNTGLKAGEAGYDPFSRRWTRSRNYYNAKAPGGDAAAVAN 540

Query: 563 GNSDNITPA--SESTGTGSGEAGVAATAAALEAAAGAGKLVDTNAPVDGGTESNLLHNFE 622
           G+++    +      G  + EAG AATAAAL+ AAGAGKLVDTNAPVD GTESN+LH+FE
Sbjct: 541 GDTNGAIGSGNGNDAGAAAAEAGRAATAAALQEAAGAGKLVDTNAPVDEGTESNMLHDFE 600

Query: 623 LPISLTVLQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL 680
           LPISL VL+KFGG  GA AGF+ARKQRIEATVG +VPENDGRRHALTLTVSDYKRRRGLL
Sbjct: 601 LPISLDVLRKFGGHEGAVAGFMARKQRIEATVGCRVPENDGRRHALTLTVSDYKRRRGLL 660

[Close]

BLAST of CmaCh16G006620 vs. TAIR10
Match: AT1G61040.1 (AT1G61040.1 plus-3 domain-containing protein)

HSP 1 Score: 800.0 bits (2065), Expect = 1.1e-231
Identity = 456/659 (69.20%), Postives = 533/659 (80.88%), Query Frame = 1


Query: 23  MADLENLLLEAAGRTKASGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDERGYASRKPS 82
           M DLENLLLEAAGRT ++GR+RH  PPS R+REGSYSD  SDSRDD SD++RGYASRKPS
Sbjct: 1   MGDLENLLLEAAGRTNSAGRSRH--PPSSRRREGSYSDGSSDSRDD-SDEDRGYASRKPS 60

Query: 83  GSQVPLKKRLDPNERDDDVGSPEEGEDEDVGSEHEGDSSDESDVGDDLYKDDDDRRKLAG 142
           GSQVPLKKRL+  ER+D     E G   D  S+ EGDSS+ESD GDDLYK+++DR+KLAG
Sbjct: 61  GSQVPLKKRLEA-EREDRAARVEGGYG-DGPSDREGDSSEESDFGDDLYKNEEDRQKLAG 120

Query: 143 MSELQREMILSDRASKKNDKHLYESLRSKMDKGKAAPSRKENPPLPSSR-IRSSARSADR 202
           M+E QREMILS+RA KK DK+  E LRSK +  K   S+KE  PLP+SR +RSSARSADR
Sbjct: 121 MTEFQREMILSERADKKGDKNFTEKLRSKRESEKTPVSKKETQPLPASRGVRSSARSADR 180

Query: 203 AAAKDDALNELRAKRLKQQDPEAHRKLRDTSRGNANNRRFSPTKRKPFTAPSLSSSSQSE 262
           AAAKDDALNELRAKR+KQQDP A RKLRD S+G + +R FS TKRKP  + +LSSSSQS+
Sbjct: 181 AAAKDDALNELRAKRMKQQDPAALRKLRDASKGGSGSRDFSSTKRKPLASSNLSSSSQSD 240

Query: 263 SESRFQSDDEGSTGDGGMIDSDDERTMPGSNGPTFDDIKEITIRRSKLAKWLMEPFFEEL 322
           S+SR QSDDEGS  +GGM+DSDD+R    S+ PTF+D+KE+TIRRSKLAKWLMEPFFEEL
Sbjct: 241 SDSRSQSDDEGS--NGGMLDSDDDR----SDVPTFEDVKEVTIRRSKLAKWLMEPFFEEL 300

Query: 323 IVGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNESSAARW 382
           IVGCFVRVGIGRS+SGPIYRLC V+NVDAT+PD+ YKLENK THKYLNV+WGNE+SAARW
Sbjct: 301 IVGCFVRVGIGRSKSGPIYRLCWVKNVDATDPDKTYKLENKTTHKYLNVVWGNETSAARW 360

Query: 383 QMAMVSDSVPLEDEYKQWVKEVERTGGRMLSKQDILEKKEAIQKANNFVYSAATVKQMLQ 442
           QMAM+SD  PLE+EY+QW++EVERT GRM +KQDI EKKEAIQ+ N+FVYSA TVKQMLQ
Sbjct: 361 QMAMISDGHPLEEEYRQWIREVERTNGRMPTKQDISEKKEAIQRTNSFVYSAETVKQMLQ 420

Query: 443 EKKFASSRPLNIAAEKDRLRNQMDVALSKNNEAEVERIKAKLRQLDASRRSQMKDAKAIR 502
           EKK AS RP+N+AAEKDRLR ++++A SKN+EA VERIK+K++QLDASR  +  D KA++
Sbjct: 421 EKKSASVRPMNVAAEKDRLRKELEIAQSKNDEAGVERIKSKIKQLDASRNKKGVDKKALK 480

Query: 503 LSEMNRKNRVENFKNASELRP-TKDLKAGEAGYDPFSRRWTRSRNYYVSNAGQVDGAAEA 562
           L+EMN+KNR ENFKNASE++  T  LKAGEAGYDPFSRRWTRS NYY       DG    
Sbjct: 481 LAEMNKKNRAENFKNASEVKSITASLKAGEAGYDPFSRRWTRSSNYYNGKNKGKDGEENE 540

Query: 563 AGNSDNITPASESTGTGSGEAGVAATAAALEAAAGAGKLVDTNAPVDGGTESNLLHNFEL 622
           A     +  A E+ G  +G AGV AT AALEAAA AGKL+DT AP+  G E N LHNFEL
Sbjct: 541 AA----VAAAVETNGADAG-AGVEATEAALEAAAEAGKLIDTRAPIGQGAEHNQLHNFEL 600

Query: 623 PISLTVLQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL 680
            +SLT LQK+GG  G Q  F+ARKQ  EATVG +V ENDG+RH LTLTVSDYKRRRGLL
Sbjct: 601 SLSLTALQKYGGPQGVQKAFMARKQLTEATVGCRVAENDGKRHGLTLTVSDYKRRRGLL 643

[Close]

BLAST of CmaCh16G006620 vs. NCBI nr
Match: gi|659107572|ref|XP_008453742.1| (PREDICTED: RNA polymerase-associated protein RTF1 homolog [Cucumis melo])

HSP 1 Score: 1144.0 bits (2958), Expect = 0.0e+00
Identity = 611/660 (92.58%), Postives = 635/660 (96.21%), Query Frame = 1


Query: 23  MADLENLLLEAAGRTKASGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDERGYASRKPS 82
           MADLENLLLEAAGRT A G NRHSHPPSRRQREGSYSD GSDSRDDDSDDERGYASRKPS
Sbjct: 1   MADLENLLLEAAGRTNAGGGNRHSHPPSRRQREGSYSDGGSDSRDDDSDDERGYASRKPS 60

Query: 83  GSQVPLKKRLDPNERDDDVGSPEEGEDEDVGSEHEGDSSDESDVGDDLYKDDDDRRKLAG 142
           GSQVPLKKRLDP ERDDD GSPEEGEDEDVGSEHEGDSSDESDVGDDLYKDDDDRRKLAG
Sbjct: 61  GSQVPLKKRLDPTERDDDGGSPEEGEDEDVGSEHEGDSSDESDVGDDLYKDDDDRRKLAG 120

Query: 143 MSELQREMILSDRASKKNDKHLYESLRSKMDKGKAAPSRKENPPLPSSRIRSSARSADRA 202
           MSELQREMILSDRASKKNDKHLYESLR+KMDKGK APSRKE PPLPSSRIRSSARSADRA
Sbjct: 121 MSELQREMILSDRASKKNDKHLYESLRAKMDKGKTAPSRKETPPLPSSRIRSSARSADRA 180

Query: 203 AAKDDALNELRAKRLKQQDPEAHRKLRDTSRGNANNRRFSPTKRKPFTAPSLSSSSQSES 262
           AAKDDALNELRAKRLKQQDPEAHRKLRD SRGN+NNRRFSPTKRKPFTAPSLSSSSQSES
Sbjct: 181 AAKDDALNELRAKRLKQQDPEAHRKLRDASRGNSNNRRFSPTKRKPFTAPSLSSSSQSES 240

Query: 263 ESRFQSDDEGSTGDGGMIDSDDERTMPGSNGPTFDDIKEITIRRSKLAKWLMEPFFEELI 322
           ESRFQSDDEGSTGDGGMIDSDDER+MPGS+GPTF+DIKEITIRRSKLAKWLMEPFFEELI
Sbjct: 241 ESRFQSDDEGSTGDGGMIDSDDERSMPGSDGPTFEDIKEITIRRSKLAKWLMEPFFEELI 300

Query: 323 VGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNESSAARWQ 382
           VGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNE+SAARWQ
Sbjct: 301 VGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNENSAARWQ 360

Query: 383 MAMVSDSVPLEDEYKQWVKEVERTGGRMLSKQDILEKKEAIQKANNFVYSAATVKQMLQE 442
           MAMVSDS PLEDEYKQWVKEVERTGGRMLSKQD+LEKK+AIQK NNFVYSAATVKQMLQ+
Sbjct: 361 MAMVSDSAPLEDEYKQWVKEVERTGGRMLSKQDVLEKKDAIQKVNNFVYSAATVKQMLQD 420

Query: 443 KKFASSRPLNIAAEKDRLRNQMDVALSKNNEAEVERIKAKLRQLDASRRSQMKDAKAIRL 502
           KK AS+RPLNIAAEKDRLR +MDVA+SKN+EAEVERIK +L+QL+ASRR QMKDAKAIRL
Sbjct: 421 KKSASARPLNIAAEKDRLRREMDVAVSKNDEAEVERIKGRLQQLEASRRLQMKDAKAIRL 480

Query: 503 SEMNRKNRVENFKNASELRPTKDLKAGEAGYDPFSRRWTRSRNYYVSNAGQVDGAAEAAG 562
           +EMNRKNRVENFKNASELRP KDLKAGEAGYDPFSRRWTRSRNYYVSNAG+ +GAAEAAG
Sbjct: 481 AEMNRKNRVENFKNASELRPLKDLKAGEAGYDPFSRRWTRSRNYYVSNAGEANGAAEAAG 540

Query: 563 NSDNITPASESTGTGSG---EAGVAATAAALEAAAGAGKLVDTNAPVDGGTESNLLHNFE 622
           NSD +TPA EST TG+G   +AG+AATAAALEAAAGAGKLVDTNAPVDGGTESN LHNFE
Sbjct: 541 NSDTVTPALESTRTGAGGTSDAGMAATAAALEAAAGAGKLVDTNAPVDGGTESNSLHNFE 600

Query: 623 LPISLTVLQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL 680
           LPISL +LQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL
Sbjct: 601 LPISLAMLQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL 660

[Close]

BLAST of CmaCh16G006620 vs. NCBI nr
Match: gi|449462844|ref|XP_004149150.1| (PREDICTED: RNA polymerase-associated protein RTF1 homolog [Cucumis sativus])

HSP 1 Score: 1139.4 bits (2946), Expect = 0.0e+00
Identity = 609/660 (92.27%), Postives = 637/660 (96.52%), Query Frame = 1


Query: 23  MADLENLLLEAAGRTKASGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDERGYASRKPS 82
           MADLENLLLEAAGRT A+GRNRHSHPPSRRQREGSYSDAGSDSRDDDSDD+RGYASRKPS
Sbjct: 1   MADLENLLLEAAGRTNAAGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDDRGYASRKPS 60

Query: 83  GSQVPLKKRLDPNERDDDVGSPEEGEDEDVGSEHEGDSSDESDVGDDLYKDDDDRRKLAG 142
           GSQVPLKKRLDP ERDDD GS EEGEDEDVGSE EGDSSDESDVGDDLYKDDDDRRKLAG
Sbjct: 61  GSQVPLKKRLDPTERDDDGGSQEEGEDEDVGSEREGDSSDESDVGDDLYKDDDDRRKLAG 120

Query: 143 MSELQREMILSDRASKKNDKHLYESLRSKMDKGKAAPSRKENPPLPSSRIRSSARSADRA 202
           MSELQREMILSDRASKKNDKHLYESLR+KMDKGK+APSRKE PPLPSSRIRSSARSADRA
Sbjct: 121 MSELQREMILSDRASKKNDKHLYESLRAKMDKGKSAPSRKETPPLPSSRIRSSARSADRA 180

Query: 203 AAKDDALNELRAKRLKQQDPEAHRKLRDTSRGNANNRRFSPTKRKPFTAPSLSSSSQSES 262
           AAKDDALNELRAKRLKQQDPEAHRKLRD SRGNAN+RRFSPTKRKPFTAPSLSSSSQSES
Sbjct: 181 AAKDDALNELRAKRLKQQDPEAHRKLRDASRGNANSRRFSPTKRKPFTAPSLSSSSQSES 240

Query: 263 ESRFQSDDEGSTGDGGMIDSDDERTMPGSNGPTFDDIKEITIRRSKLAKWLMEPFFEELI 322
           ESRFQSDDEGSTGDGGMIDSDDER++PGS+GPTF+DIKE+TIRRSKLAKWLMEPFFEELI
Sbjct: 241 ESRFQSDDEGSTGDGGMIDSDDERSIPGSDGPTFEDIKEVTIRRSKLAKWLMEPFFEELI 300

Query: 323 VGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNESSAARWQ 382
           VGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNE+SAARWQ
Sbjct: 301 VGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNEASAARWQ 360

Query: 383 MAMVSDSVPLEDEYKQWVKEVERTGGRMLSKQDILEKKEAIQKANNFVYSAATVKQMLQE 442
           MAMVSDS PLEDEYKQWVKEVERTGGRMLSKQDILEKKEAIQK NNFVYSAATVKQMLQ+
Sbjct: 361 MAMVSDSAPLEDEYKQWVKEVERTGGRMLSKQDILEKKEAIQKVNNFVYSAATVKQMLQD 420

Query: 443 KKFASSRPLNIAAEKDRLRNQMDVALSKNNEAEVERIKAKLRQLDASRRSQMKDAKAIRL 502
           KK AS+RPLNIAAEKDRLR +MDVA+SKN+EAEVERIK +L+QL+ASRR QMKDAKAIRL
Sbjct: 421 KKSASARPLNIAAEKDRLRREMDVAVSKNDEAEVERIKTRLQQLEASRRLQMKDAKAIRL 480

Query: 503 SEMNRKNRVENFKNASELRPTKDLKAGEAGYDPFSRRWTRSRNYYVSNAGQVDGAAEAAG 562
           +EMNRKNRVENFKNASELRP KDLKAGEAGYDPFSRRWTRSRNYYVSNAG+ +GAAEAAG
Sbjct: 481 AEMNRKNRVENFKNASELRPLKDLKAGEAGYDPFSRRWTRSRNYYVSNAGEANGAAEAAG 540

Query: 563 NSDNITPASESTGT---GSGEAGVAATAAALEAAAGAGKLVDTNAPVDGGTESNLLHNFE 622
           NSDN+TPA E+T T   G+ +AG+AATAAALEAAAGAGKLVDTNAPVDGGTESN LHNFE
Sbjct: 541 NSDNVTPALENTRTEAGGTSDAGMAATAAALEAAAGAGKLVDTNAPVDGGTESNSLHNFE 600

Query: 623 LPISLTVLQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL 680
           LPISL +LQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL
Sbjct: 601 LPISLAMLQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL 660

[Close]

BLAST of CmaCh16G006620 vs. NCBI nr
Match: gi|703114113|ref|XP_010100559.1| (RNA polymerase-associated protein RTF1-like protein [Morus notabilis])

HSP 1 Score: 927.5 bits (2396), Expect = 1.3e-266
Identity = 516/662 (77.95%), Postives = 577/662 (87.16%), Query Frame = 1


Query: 23  MADLENLLLEAAGRTKASGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDERGYASRKPS 82
           MA+LENLLLEAAGRT+++GRNRHS PPSRR+REGSYSD GSDSRDDDSDD+RGYA+RKPS
Sbjct: 1   MAELENLLLEAAGRTRSAGRNRHSIPPSRRRREGSYSDGGSDSRDDDSDDDRGYANRKPS 60

Query: 83  GSQVPLKKRLDPNERDDDVGSPEEGEDEDVGSEHEGDSSDESDVGDDLYKDDDDRRKLAG 142
           GSQVPLKKRLDP E DDD GS EEG+D D GS+ EGDS  ESDVG DLYKDDDDRRKLA 
Sbjct: 61  GSQVPLKKRLDPTEMDDDQGSEEEGDD-DRGSDREGDS--ESDVGSDLYKDDDDRRKLAE 120

Query: 143 MSELQREMILSDRASKKNDKHLYESLRSKMD-KGKAAPSRKENPPLPSSRIRSSARSADR 202
           M+ELQREMIL DRASKK DK+L E LR K D KGKA  SRKE  PLPSSR+RSSARSADR
Sbjct: 121 MTELQREMILLDRASKKEDKNLKEKLRPKWDNKGKATQSRKET-PLPSSRVRSSARSADR 180

Query: 203 AAAKDDALNELRAKRLKQQDPEAHRKLRDTSRGNANNRRFSPTKRKPFTAPSLSSSSQSE 262
           AAAKDDALNELRAKRLKQQDPEAH KLRD SRG + +R     KRK +TA SLSSSSQS+
Sbjct: 181 AAAKDDALNELRAKRLKQQDPEAHGKLRDASRGGSGSRNLLHNKRKSYTATSLSSSSQSD 240

Query: 263 SESRFQSDDEGSTGDGGMIDSDDERTMPGSNGPTFDDIKEITIRRSKLAKWLMEPFFEEL 322
           SES  QS+DEGSTGDGGMIDSDDER +PGS G TFDDIKE+T+RRSKLAKWLMEPFFEEL
Sbjct: 241 SESESQSEDEGSTGDGGMIDSDDERGIPGSEGLTFDDIKEVTVRRSKLAKWLMEPFFEEL 300

Query: 323 IVGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNESSAARW 382
           IVGCFVRVGIGRS+SGPIYRLC+VRNVDA+EPDRQYKL+NKITHKYLNV+WGNE+SAARW
Sbjct: 301 IVGCFVRVGIGRSKSGPIYRLCMVRNVDASEPDRQYKLDNKITHKYLNVVWGNENSAARW 360

Query: 383 QMAMVSDSVPLEDEYKQWVKEVERTGGRMLSKQDILEKKEAIQKANNFVYSAATVKQMLQ 442
           QMAMVSDSVP E+E+KQWV+EVER+GGRM +K DIL+KKE+I+K N FVYSAATVKQMLQ
Sbjct: 361 QMAMVSDSVPNEEEFKQWVREVERSGGRMPTKHDILDKKESIKKINTFVYSAATVKQMLQ 420

Query: 443 EKKFASSRPLNIAAEKDRLRNQMDVALSKNNEAEVERIKAKLRQLDASRRSQMKDAKAIR 502
           EKK AS+RPLNIA EKDRLR +++VA SKN+E EV+RIK +L++L+ASR+++  DAKAIR
Sbjct: 421 EKKSASARPLNIALEKDRLRRELEVAQSKNDEVEVDRIKTRLQELEASRKAKQTDAKAIR 480

Query: 503 LSEMNRKNRVENFKNASELRPTK-DLKAGEAGYDPFSRRWTRSRNYYVSNAGQV-DGAAE 562
           L+EMNRKNRVENFKNASEL+P    LKAGEAGYDPFSRRWTRSRNYYV   G+V + +  
Sbjct: 481 LAEMNRKNRVENFKNASELKPVNTGLKAGEAGYDPFSRRWTRSRNYYVGKPGEVKEDSGA 540

Query: 563 AAGNSDNITPASES--TGTGSGEAGVAATAAALEAAAGAGKLVDTNAPVDGGTESNLLHN 622
            AGN+   T A  +   G  + EAG+AAT AALEAAA AGKLVDTNAPVD GT SN+LHN
Sbjct: 541 NAGNNGASTDAENNGRHGIVAAEAGIAATEAALEAAADAGKLVDTNAPVDQGTVSNMLHN 600

Query: 623 FELPISLTVLQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYKRRRG 680
           FELPISL+VLQKFGG  GAQAGF+ARKQRIEATVG +VPENDGRRHALTL+V DYKRRRG
Sbjct: 601 FELPISLSVLQKFGGPQGAQAGFMARKQRIEATVGCRVPENDGRRHALTLSVGDYKRRRG 658

[Close]

BLAST of CmaCh16G006620 vs. NCBI nr
Match: gi|802784101|ref|XP_012091565.1| (PREDICTED: RNA polymerase-associated protein RTF1 homolog [Jatropha curcas])

HSP 1 Score: 926.4 bits (2393), Expect = 2.9e-266
Identity = 513/660 (77.73%), Postives = 576/660 (87.27%), Query Frame = 1


Query: 23  MADLENLLLEAAGRTKASGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDERGYASRKPS 82
           MADLENLLLEAAGRT +SGRNR++HPPSRR+REGSYSD GSDSRD+DSDD+RGYASRKPS
Sbjct: 1   MADLENLLLEAAGRTGSSGRNRNAHPPSRRRREGSYSDGGSDSRDEDSDDDRGYASRKPS 60

Query: 83  GSQVPLKKRLDPNERDDDVGSPEEGEDEDVGSEHEGDSSDESDVGDDLYKDDDDRRKLAG 142
           GSQVPLKKRLDP ERDDD GS EEG  +D  S+ EGDSSDESDVGDDLYKD+DDRRKLA 
Sbjct: 61  GSQVPLKKRLDPAERDDDQGSQEEGGYDDGASDREGDSSDESDVGDDLYKDEDDRRKLAQ 120

Query: 143 MSELQREMILSDRASKKNDKHLYESLRSKMDKGKAAPSRKENPPLPSSR-IRSSARSADR 202
           MSEL+REMILS+RA KK DK+L E +RSK D  +A  SRKE PPLPSSR +R+SARSADR
Sbjct: 121 MSELEREMILSERADKKGDKNLTERIRSKRDSERATRSRKETPPLPSSRGVRTSARSADR 180

Query: 203 AAAKDDALNELRAKRLKQQDPEAHRKLRDTSRGNANNRRFSPTKRKPFTAPSLSSSSQSE 262
           AAAKDDALNELRAKRLKQQDPEAHRKLRD SRG + +R  SP +RK FT+ SLSSSS SE
Sbjct: 181 AAAKDDALNELRAKRLKQQDPEAHRKLRDVSRGTSGSRGVSPVRRKRFTSASLSSSS-SE 240

Query: 263 SESRFQSDDEGSTGDGGMIDSDDERTMPGSNGPTFDDIKEITIRRSKLAKWLMEPFFEEL 322
           S+SR  S+DE STGDGGM DSD++R  PGS G T+DDI+E+TIRRSKLAKWLMEP+FEEL
Sbjct: 241 SDSRSHSEDEASTGDGGMADSDEDRE-PGSEGLTYDDIREVTIRRSKLAKWLMEPWFEEL 300

Query: 323 IVGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNESSAARW 382
           IVGCFVRVGIGRS+SGPIYRLCLVRNVDA +PDR YKLENK T+KYLNVIWGNESSAARW
Sbjct: 301 IVGCFVRVGIGRSKSGPIYRLCLVRNVDAADPDRPYKLENKTTYKYLNVIWGNESSAARW 360

Query: 383 QMAMVSDSVPLEDEYKQWVKEVERTGGRMLSKQDILEKKEAIQKANNFVYSAATVKQMLQ 442
           QMAMVSDS P EDEYKQWV+EVER+GGRM +KQDILEKKEAI+K+N FVYSAATVKQMLQ
Sbjct: 361 QMAMVSDSAPTEDEYKQWVREVERSGGRMPTKQDILEKKEAIKKSNTFVYSAATVKQMLQ 420

Query: 443 EKKFASSRPLNIAAEKDRLRNQMDVALSKNNEAEVERIKAKLRQLDASRRSQMKDAKAIR 502
           EKK AS+RPLN+AAEKDRLR +++VA  K ++AEVERI+A++++L+ASR++Q KDAKAIR
Sbjct: 421 EKKSASTRPLNVAAEKDRLRRELEVAQMKQDDAEVERIRARIQELEASRQAQEKDAKAIR 480

Query: 503 LSEMNRKNRVENFKNASELRPTK-DLKAGEAGYDPFSRRWTRSRNYYVSNAGQVDGAAEA 562
           L+EMNRKNR ENF+NASEL+P    LKAGEAGYDPFSRRWTRSRNYYVS  G  D AAEA
Sbjct: 481 LAEMNRKNRAENFRNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVSKPGGADVAAEA 540

Query: 563 AGNSDNITPASESTGTGS-GEAGVAATAAALEAAAGAGKLVDTNAPVDGGTESNLLHNFE 622
             N       S    TG+  EAG+AATAAALEAAA AGKLVDT APVD GTESN LH+F+
Sbjct: 541 NNNGTAAVAHSNGAATGTLAEAGMAATAAALEAAADAGKLVDTAAPVDQGTESNTLHDFD 600

Query: 623 LPISLTVLQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL 680
           LPISLT L+KFGGA GA+AGF+ARKQ+IEATVG +VPENDGRRHALTLTVSDYKRRRGLL
Sbjct: 601 LPISLTALEKFGGAKGAKAGFMARKQQIEATVGCRVPENDGRRHALTLTVSDYKRRRGLL 658

[Close]

BLAST of CmaCh16G006620 vs. NCBI nr
Match: gi|590624747|ref|XP_007025691.1| (PAF1 complex component isoform 1 [Theobroma cacao])

HSP 1 Score: 924.1 bits (2387), Expect = 1.4e-265
Identity = 507/662 (76.59%), Postives = 570/662 (86.10%), Query Frame = 1


Query: 23  MADLENLLLEAAGRTKASGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDERGYASRKPS 82
           MADLENLLLEAAGRT   GRNRHS PPSRR+REGSYSD GSDSRDDDSDD+ GYASRKPS
Sbjct: 1   MADLENLLLEAAGRTGTGGRNRHSLPPSRRRREGSYSDGGSDSRDDDSDDDHGYASRKPS 60

Query: 83  GSQVPLKKRLDPNERDDDVGSPEEGEDEDVGSEHEGDSSDESDVGDDLYKDDDDRRKLAG 142
           GSQVPLKKRLDP ERDDD GS EEG+ +D  S HEGDSSDESDVGDDLYK++DDRRKLA 
Sbjct: 61  GSQVPLKKRLDPAERDDDQGSQEEGDYDDGVSVHEGDSSDESDVGDDLYKNEDDRRKLAQ 120

Query: 143 MSELQREMILSDRASKKNDKHLYESLRSKMDKGKAAPSRKENPPLPSSR-IRSSARSADR 202
           M+EL+RE+ILS+RA K+ DK   E +RSK +  + + SRKE PPLPSSR +RSSARSADR
Sbjct: 121 MTELERELILSERADKRGDKKFTEKIRSKRENDRPSRSRKETPPLPSSRGVRSSARSADR 180

Query: 203 AAAKDDALNELRAKRLKQQDPEAHRKLRDTSRGNANNRRFSPTKRKPFTAPSLSSSSQSE 262
           AAAKDDALNELRAKRLKQQDPEAHRKLRD SRG++ +R  SP KRKPFTA SLSSSSQS+
Sbjct: 181 AAAKDDALNELRAKRLKQQDPEAHRKLRDASRGSSGSRGLSPVKRKPFTASSLSSSSQSD 240

Query: 263 SESRFQSDDEGSTGDGGMIDSDDERTMPGSNGPTFDDIKEITIRRSKLAKWLMEPFFEEL 322
           SESR  S+DEGSTGDGGM+DSDD+R M G +GPTFDDIKEITIRRSKLAKW MEPFFEEL
Sbjct: 241 SESRSNSEDEGSTGDGGMVDSDDDRGMQGPDGPTFDDIKEITIRRSKLAKWFMEPFFEEL 300

Query: 323 IVGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNESSAARW 382
           IVGC+VRVGIGRS+SGPIYRLC+VRNVDATEP+R YKLENK T+KYLNV+WGNESSAARW
Sbjct: 301 IVGCYVRVGIGRSKSGPIYRLCMVRNVDATEPERTYKLENKTTYKYLNVVWGNESSAARW 360

Query: 383 QMAMVSDSVPLEDEYKQWVKEVERTGGRMLSKQDILEKKEAIQKANNFVYSAATVKQMLQ 442
           QMAM+SDS P E+E++Q ++E+ER+GGRM SKQD+LEKKEA+QKA  FVYSAATVKQMLQ
Sbjct: 361 QMAMISDSPPQEEEFRQLIRELERSGGRMPSKQDVLEKKEALQKAKTFVYSAATVKQMLQ 420

Query: 443 EKKFASSRPLNIAAEKDRLRNQMDVALSKNNEAEVERIKAKLRQLDASRRSQMKDAKAIR 502
           EKK  SSRPLNIAAEKDRLR  +++A SK++EAEVERIK +L+QL+ASR++Q KDAKA+R
Sbjct: 421 EKKSTSSRPLNIAAEKDRLRRDLEIAQSKHDEAEVERIKMRLQQLEASRQAQEKDAKAVR 480

Query: 503 LSEMNRKNRVENFKNASELRPTK-DLKAGEAGYDPFSRRWTRSRNYYVSNAGQVDGAAEA 562
           L+EMNRKNR ENFKNASEL+P    LKAGEAGYDPFSRRWTRSRNYYV+     D AA A
Sbjct: 481 LAEMNRKNRAENFKNASELKPVNTGLKAGEAGYDPFSRRWTRSRNYYVAKPPGADAAAVA 540

Query: 563 AGNSDNITPASESTGT---GSGEAGVAATAAALEAAAGAGKLVDTNAPVDGGTESNLLHN 622
             N D I   +   G     + EAG AAT AAL+ AAGAGKLVDT+APVD GTESN+LH+
Sbjct: 541 --NGDRIGVIASGNGNDARAAAEAGRAATVAALQEAAGAGKLVDTSAPVDEGTESNMLHD 600

Query: 623 FELPISLTVLQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYKRRRG 680
           FE+PISL  LQ+FGG  GA AGF+ARKQRIEATVG QVPENDGRRHALTLTVSDYKRRRG
Sbjct: 601 FEIPISLNALQRFGGPQGAVAGFMARKQRIEATVGCQVPENDGRRHALTLTVSDYKRRRG 660

The following BLAST results are available for this feature:

BLAST of CmaCh16G006620 vs. Swiss-Prot


Match Name	E-value	Identity	Description
VIP5_ARATH	1.9e-230	69.20	Protein RTF1 homolog OS=Arabidopsis thaliana GN=VIP5 PE=1 SV=1	[more]
RTF1_HUMAN	1.6e-19	25.53	RNA polymerase-associated protein RTF1 homolog OS=Homo sapiens GN=RTF1 PE=1 SV=4	[more]
RTF1_MOUSE	2.8e-19	25.29	RNA polymerase-associated protein RTF1 homolog OS=Mus musculus GN=Rtf1 PE=1 SV=1	[more]
RTF1_PONAB	6.4e-16	25.37	RNA polymerase-associated protein RTF1 homolog (Fragment) OS=Pongo abelii GN=RTF...	[more]
RTF1_CAEEL	1.8e-13	24.04	RNA polymerase-associated protein RTF1 homolog OS=Caenorhabditis elegans GN=rtfo...	[more]

BLAST of CmaCh16G006620 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXW1_CUCSA	0.0e+00	92.27	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G038650 PE=4 SV=1	[more]
W9RDA9_9ROSA	9.0e-267	77.95	RNA polymerase-associated protein RTF1-like protein OS=Morus notabilis GN=L484_0...	[more]
A0A067JDU6_JATCU	2.0e-266	77.73	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21409 PE=4 SV=1	[more]
A0A061GFX4_THECC	9.9e-266	76.59	PAF1 complex component isoform 1 OS=Theobroma cacao GN=TCM_029914 PE=4 SV=1	[more]
A0A0D2T1B1_GOSRA	1.2e-263	76.06	Uncharacterized protein OS=Gossypium raimondii GN=B456_011G025800 PE=4 SV=1	[more]

BLAST of CmaCh16G006620 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G61040.1	1.1e-231	69.20	plus-3 domain-containing protein	[more]

BLAST of CmaCh16G006620 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659107572\|ref\|XP_008453742.1\|	0.0e+00	92.58	PREDICTED: RNA polymerase-associated protein RTF1 homolog [Cucumis melo]	[more]
gi\|449462844\|ref\|XP_004149150.1\|	0.0e+00	92.27	PREDICTED: RNA polymerase-associated protein RTF1 homolog [Cucumis sativus]	[more]
gi\|703114113\|ref\|XP_010100559.1\|	1.3e-266	77.95	RNA polymerase-associated protein RTF1-like protein [Morus notabilis]	[more]
gi\|802784101\|ref\|XP_012091565.1\|	2.9e-266	77.73	PREDICTED: RNA polymerase-associated protein RTF1 homolog [Jatropha curcas]	[more]
gi\|590624747\|ref\|XP_007025691.1\|	1.4e-265	76.59	PAF1 complex component isoform 1 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004343	Plus-3_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0006368	transcription elongation from RNA polymerase II promoter
GO:0016570	histone modification

Vocabulary: **Cellular Component**
Term	Definition
GO:0016593	Cdc73/Paf1 complex

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006352	DNA-templated transcription, initiation
biological_process	GO:0016570	histone modification
biological_process	GO:0009910	negative regulation of flower development
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0006368	transcription elongation from RNA polymerase II promoter
cellular_component	GO:0016593	Cdc73/Paf1 complex
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G006620.1	CmaCh16G006620.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004343	Plus-3 domain	PFAM	PF03126	Plus-3	coord: 298..403 score: 1.7
IPR004343	Plus-3 domain	SMART	SM00719	rtf1	coord: 293..405 score: 3.0
IPR004343	Plus-3 domain	PROFILE	PS51360	PLUS3	coord: 293..428 score: 36
IPR004343	Plus-3 domain	unknown	SSF159042	Plus3-like	coord: 295..426 score: 3.01
None	No IPR available	unknown	Coil	Coil	coord: 457..489 scor
None	No IPR available	PANTHER	PTHR13115:SF8	RNA POLYMERASE-ASSOCIATED PROTEIN RTF1 HOMOLOG	coord: 23..679 score: 1.8E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh16G006620	Cucsa.201430	Cucumber (Gy14) v1	cgycmaB0595
CmaCh16G006620	Cla014512	Watermelon (97103) v1	cmawmB307
CmaCh16G006620	Csa4G038650	Cucumber (Chinese Long) v2	cmacuB337
CmaCh16G006620	MELO3C017564	Melon (DHL92) v3.5.1	cmameB301
CmaCh16G006620	CSPI04G04920	Wild cucumber (PI 183967)	cmacpiB342
CmaCh16G006620	CmoCh16G007190	Cucurbita moschata (Rifu)	cmacmoB322
CmaCh16G006620	CmoCh04G008430	Cucurbita moschata (Rifu)	cmacmoB337
CmaCh16G006620	Lsi07G001960	Bottle gourd (USVL1VR-Ls)	cmalsiB326
CmaCh16G006620	Cp4.1LG14g01450	Cucurbita pepo (Zucchini)	cmacpeB344
CmaCh16G006620	Cp4.1LG01g09470	Cucurbita pepo (Zucchini)	cmacpeB350
CmaCh16G006620	MELO3C017564.2	Melon (DHL92) v3.6.1	cmamedB350
CmaCh16G006620	CsaV3_4G005020	Cucumber (Chinese Long) v3	cmacucB0393
CmaCh16G006620	Bhi01G001906	Wax gourd	cmawgoB0432
CmaCh16G006620	Carg14183	Silver-seed gourd	carcmaB1286
CmaCh16G006620	Carg05778	Silver-seed gourd	carcmaB1409

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh16G006620	CmaCh04G007870	Cucurbita maxima (Rimu)	cmacmaB350

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh16G006620	Cucumber (Gy14) v2	cgybcmaB498
CmaCh16G006620	Watermelon (97103) v2	cmawmbB351
CmaCh16G006620	Watermelon (97103) v2	cmawmbB331
CmaCh16G006620	Watermelon (Charleston Gray)	cmawcgB301
CmaCh16G006620	Watermelon (97103) v1	cmawmB323