Carg05778 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg05778
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	RNA polymerase-associated RTF1-like protein
Location	Cucurbita_argyrosperma_scaffold_033 : 985509 .. 987482 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGATCTAGAAAATTTACTTCTTGAGGCTGCGGGAAGAACTAAGGCATCAGGGAGAAATCGACACTCTCATCCACCATCACGAAGACAGCGCGAAGGTTCATATTCTGATGCTGGGAGTGACTCGAGGGATGATGACTCAGATGATGAACGTGGTTATGCGAGCAGGAAGCCATCTGGATCTCAGGTTCCTCTGAAGAAGAGGTTAGATCCTAATGAGAGGGATGATGATGTGGGCAGCCCAGAAGAAGGGGAAGACGAAGATGTTGGTTCAGAACATGAGGGTGACAGCAGTGATGAATCTGATGTTGGGGATGATCTTTATAAAGATGACGATGACAGGCGCAAGCTTGCTGGTATGTCTGAACTTCAAAGGGAGATGATTCTTTCAGACAGAGCATCGAAGAAGAATGATAAGCATTTATATGAAAGCTTGAGATCTAAGATGGATAAAGGGAAGGCTGCCCCGTCTCGGAAAGAAAATCCTCCTCCCCCATCATCTCGTATTAGATCGTCAGCCCGATCTGCTGATAGAGCAGCTGCAAAAGATGATGCTTTAAATGAATTGCGTGCAAAAAGGTTGAAGCAGCAGGACCCCGAGGCTCACCGCAAATTGAGAGATACATCTAGAGGAAACGCAAATAATCGAAGGTTCTCACCAACAAAGCGAAAGCCCTTCACTGCTCCTAGTTTGAGTAGCTCAAGCCAAAGTGAAAGTGAAAGTAGGTTTCAAAGTGACGATGAAGGATCTACAGGAGATGGTGGAATGATTGACAGTGACGATGAAAGAACCATGCCTGGTTCAAATGGGCCAACATTTGATGATATCAAGGAAATTACTATTCGTAGATCAAAGCTTGCAAAATGGTTAATGGAGCCATTCTTTGAGGAGTTGATAGTTGGATGCTTTGTGAGAGTCGGAATCGGGAGATCAAGATCCGGGCCTATCTACAGGCTCTGCTTGGTGCGCAATGTTGATGCAACAGAACCCGATCGTCAGTATAAACTCGAGAACAAAATCACGCATAAATATCTAAATGTTATTTGGGGAAATGAAAGTTCTGCTGCCAGATGGCAAATGGCTATGGTTTCGGACTCTGGTCCACTCGAGGATGAATATAAACAGTGGGTGAAGGAAGTAGAGCGAACGGGCGGTCGGATGCTGAGCAAGCAGGATATCTTGGAAAAGAAGGAAGCTATACAGAAAGCCAACAACTTCGTGTACTCAGCAGCCACAGTGAAGCAGATGTTGCAGGAGAAAAAATCTGCCTCATCAAGGCCATTAAATATTGCAGCTGAGAAGGACCGACTGAGGAATCAGATGGACGTAGCACTAAGCAAAAACAATGAAGCCGAGGTGGAGAGGATCAAAGCAAAACTGCGCCAATTAGACGCATCCAGGAGGTCACAAATGAAAGATGCCAAGGCTATTAGGTTATCTGAGATGAACAGGAAGAATAGGGTGGAAAACTTCAAGAACGCATCAGAACTAAGACCCACGAAAGATTTGAAAGCTGGTGAGGCTGGTTATGATCCCTTCTCTAGGAGATGGACAAGGTCGAGGAATTATTATGTTTCAAACGCTGGTCAAGTCGATGGGGCTGCCGAGGCAGCTGGCAACAGTGACAATATAACTCCTGCATCAGAGACTACTGGAACAGGATCTGGAGAAGCTGGCGTGGCAGCTACCGCAGCAGCTTTGGAAGCTGCTGCTGGTGCTGGAAAGTTGGTCGATACTAACGCTCCGGTAGATGGAGGAACAGAATCGAACTTGCTGCACAACTTCGAGCTGCCTATATCATTGGCTGTGCTTCAGAAATTTGGTGGCGCTCTGGGAGCTCAGGCTGGGTTCTTAGCAAGGAAACAAAGGATAGAAGCCACAGTTGGGCGTCAAGTCCCTGAGAACGATGGTAGGCGGCATGCACTGACACTCACGGTTAGCGACTACAAGAGAAGAAGAGGACTTCTTTGA

mRNA sequence

ATGGCAGATCTAGAAAATTTACTTCTTGAGGCTGCGGGAAGAACTAAGGCATCAGGGAGAAATCGACACTCTCATCCACCATCACGAAGACAGCGCGAAGGTTCATATTCTGATGCTGGGAGTGACTCGAGGGATGATGACTCAGATGATGAACGTGGTTATGCGAGCAGGAAGCCATCTGGATCTCAGGTTCCTCTGAAGAAGAGGTTAGATCCTAATGAGAGGGATGATGATGTGGGCAGCCCAGAAGAAGGGGAAGACGAAGATGTTGGTTCAGAACATGAGGGTGACAGCAGTGATGAATCTGATGTTGGGGATGATCTTTATAAAGATGACGATGACAGGCGCAAGCTTGCTGGTATGTCTGAACTTCAAAGGGAGATGATTCTTTCAGACAGAGCATCGAAGAAGAATGATAAGCATTTATATGAAAGCTTGAGATCTAAGATGGATAAAGGGAAGGCTGCCCCGTCTCGGAAAGAAAATCCTCCTCCCCCATCATCTCGTATTAGATCGTCAGCCCGATCTGCTGATAGAGCAGCTGCAAAAGATGATGCTTTAAATGAATTGCGTGCAAAAAGGTTGAAGCAGCAGGACCCCGAGGCTCACCGCAAATTGAGAGATACATCTAGAGGAAACGCAAATAATCGAAGGTTCTCACCAACAAAGCGAAAGCCCTTCACTGCTCCTAGTTTGAGTAGCTCAAGCCAAAGTGAAAGTGAAAGTAGGTTTCAAAGTGACGATGAAGGATCTACAGGAGATGGTGGAATGATTGACAGTGACGATGAAAGAACCATGCCTGGTTCAAATGGGCCAACATTTGATGATATCAAGGAAATTACTATTCGTAGATCAAAGCTTGCAAAATGGTTAATGGAGCCATTCTTTGAGGAGTTGATAGTTGGATGCTTTGTGAGAGTCGGAATCGGGAGATCAAGATCCGGGCCTATCTACAGGCTCTGCTTGGTGCGCAATGTTGATGCAACAGAACCCGATCGTCAGTATAAACTCGAGAACAAAATCACGCATAAATATCTAAATGTTATTTGGGGAAATGAAAGTTCTGCTGCCAGATGGCAAATGGCTATGGTTTCGGACTCTGGTCCACTCGAGGATGAATATAAACAGTGGGTGAAGGAAGTAGAGCGAACGGGCGGTCGGATGCTGAGCAAGCAGGATATCTTGGAAAAGAAGGAAGCTATACAGAAAGCCAACAACTTCGTGTACTCAGCAGCCACAGTGAAGCAGATGTTGCAGGAGAAAAAATCTGCCTCATCAAGGCCATTAAATATTGCAGCTGAGAAGGACCGACTGAGGAATCAGATGGACGTAGCACTAAGCAAAAACAATGAAGCCGAGGTGGAGAGGATCAAAGCAAAACTGCGCCAATTAGACGCATCCAGGAGGTCACAAATGAAAGATGCCAAGGCTATTAGGTTATCTGAGATGAACAGGAAGAATAGGGTGGAAAACTTCAAGAACGCATCAGAACTAAGACCCACGAAAGATTTGAAAGCTGGTGAGGCTGGTTATGATCCCTTCTCTAGGAGATGGACAAGGTCGAGGAATTATTATGTTTCAAACGCTGGTCAAGTCGATGGGGCTGCCGAGGCAGCTGGCAACAGTGACAATATAACTCCTGCATCAGAGACTACTGGAACAGGATCTGGAGAAGCTGGCGTGGCAGCTACCGCAGCAGCTTTGGAAGCTGCTGCTGGTGCTGGAAAGTTGGTCGATACTAACGCTCCGGTAGATGGAGGAACAGAATCGAACTTGCTGCACAACTTCGAGCTGCCTATATCATTGGCTGTGCTTCAGAAATTTGGTGGCGCTCTGGGAGCTCAGGCTGGGTTCTTAGCAAGGAAACAAAGGATAGAAGCCACAGTTGGGCGTCAAGTCCCTGAGAACGATGGTAGGCGGCATGCACTGACACTCACGGTTAGCGACTACAAGAGAAGAAGAGGACTTCTTTGA

Coding sequence (CDS)

ATGGCAGATCTAGAAAATTTACTTCTTGAGGCTGCGGGAAGAACTAAGGCATCAGGGAGAAATCGACACTCTCATCCACCATCACGAAGACAGCGCGAAGGTTCATATTCTGATGCTGGGAGTGACTCGAGGGATGATGACTCAGATGATGAACGTGGTTATGCGAGCAGGAAGCCATCTGGATCTCAGGTTCCTCTGAAGAAGAGGTTAGATCCTAATGAGAGGGATGATGATGTGGGCAGCCCAGAAGAAGGGGAAGACGAAGATGTTGGTTCAGAACATGAGGGTGACAGCAGTGATGAATCTGATGTTGGGGATGATCTTTATAAAGATGACGATGACAGGCGCAAGCTTGCTGGTATGTCTGAACTTCAAAGGGAGATGATTCTTTCAGACAGAGCATCGAAGAAGAATGATAAGCATTTATATGAAAGCTTGAGATCTAAGATGGATAAAGGGAAGGCTGCCCCGTCTCGGAAAGAAAATCCTCCTCCCCCATCATCTCGTATTAGATCGTCAGCCCGATCTGCTGATAGAGCAGCTGCAAAAGATGATGCTTTAAATGAATTGCGTGCAAAAAGGTTGAAGCAGCAGGACCCCGAGGCTCACCGCAAATTGAGAGATACATCTAGAGGAAACGCAAATAATCGAAGGTTCTCACCAACAAAGCGAAAGCCCTTCACTGCTCCTAGTTTGAGTAGCTCAAGCCAAAGTGAAAGTGAAAGTAGGTTTCAAAGTGACGATGAAGGATCTACAGGAGATGGTGGAATGATTGACAGTGACGATGAAAGAACCATGCCTGGTTCAAATGGGCCAACATTTGATGATATCAAGGAAATTACTATTCGTAGATCAAAGCTTGCAAAATGGTTAATGGAGCCATTCTTTGAGGAGTTGATAGTTGGATGCTTTGTGAGAGTCGGAATCGGGAGATCAAGATCCGGGCCTATCTACAGGCTCTGCTTGGTGCGCAATGTTGATGCAACAGAACCCGATCGTCAGTATAAACTCGAGAACAAAATCACGCATAAATATCTAAATGTTATTTGGGGAAATGAAAGTTCTGCTGCCAGATGGCAAATGGCTATGGTTTCGGACTCTGGTCCACTCGAGGATGAATATAAACAGTGGGTGAAGGAAGTAGAGCGAACGGGCGGTCGGATGCTGAGCAAGCAGGATATCTTGGAAAAGAAGGAAGCTATACAGAAAGCCAACAACTTCGTGTACTCAGCAGCCACAGTGAAGCAGATGTTGCAGGAGAAAAAATCTGCCTCATCAAGGCCATTAAATATTGCAGCTGAGAAGGACCGACTGAGGAATCAGATGGACGTAGCACTAAGCAAAAACAATGAAGCCGAGGTGGAGAGGATCAAAGCAAAACTGCGCCAATTAGACGCATCCAGGAGGTCACAAATGAAAGATGCCAAGGCTATTAGGTTATCTGAGATGAACAGGAAGAATAGGGTGGAAAACTTCAAGAACGCATCAGAACTAAGACCCACGAAAGATTTGAAAGCTGGTGAGGCTGGTTATGATCCCTTCTCTAGGAGATGGACAAGGTCGAGGAATTATTATGTTTCAAACGCTGGTCAAGTCGATGGGGCTGCCGAGGCAGCTGGCAACAGTGACAATATAACTCCTGCATCAGAGACTACTGGAACAGGATCTGGAGAAGCTGGCGTGGCAGCTACCGCAGCAGCTTTGGAAGCTGCTGCTGGTGCTGGAAAGTTGGTCGATACTAACGCTCCGGTAGATGGAGGAACAGAATCGAACTTGCTGCACAACTTCGAGCTGCCTATATCATTGGCTGTGCTTCAGAAATTTGGTGGCGCTCTGGGAGCTCAGGCTGGGTTCTTAGCAAGGAAACAAAGGATAGAAGCCACAGTTGGGCGTCAAGTCCCTGAGAACGATGGTAGGCGGCATGCACTGACACTCACGGTTAGCGACTACAAGAGAAGAAGAGGACTTCTTTGA

Protein sequence

MADLENLLLEAAGRTKASGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDERGYASRKPSGSQVPLKKRLDPNERDDDVGSPEEGEDEDVGSEHEGDSSDESDVGDDLYKDDDDRRKLAGMSELQREMILSDRASKKNDKHLYESLRSKMDKGKAAPSRKENPPPPSSRIRSSARSADRAAAKDDALNELRAKRLKQQDPEAHRKLRDTSRGNANNRRFSPTKRKPFTAPSLSSSSQSESESRFQSDDEGSTGDGGMIDSDDERTMPGSNGPTFDDIKEITIRRSKLAKWLMEPFFEELIVGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNESSAARWQMAMVSDSGPLEDEYKQWVKEVERTGGRMLSKQDILEKKEAIQKANNFVYSAATVKQMLQEKKSASSRPLNIAAEKDRLRNQMDVALSKNNEAEVERIKAKLRQLDASRRSQMKDAKAIRLSEMNRKNRVENFKNASELRPTKDLKAGEAGYDPFSRRWTRSRNYYVSNAGQVDGAAEAAGNSDNITPASETTGTGSGEAGVAATAAALEAAAGAGKLVDTNAPVDGGTESNLLHNFELPISLAVLQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL

Homology

[Close]

BLAST of Carg05778 vs. NCBI nr
Match: XP_023552862.1 (protein RTF1 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 1138.6 bits (2944), Expect = 0.0e+00
Identity = 650/657 (98.93%), Postives = 653/657 (99.39%), Query Frame = 0


Query: 1   MADLENLLLEAAGRTKASGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDERGYASRKPS 60
           MADLENLLLEAAGRTK+SGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDERGYASRKPS
Sbjct: 1   MADLENLLLEAAGRTKSSGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDERGYASRKPS 60

Query: 61  GSQVPLKKRLDPNERDDDVGSPEEGXXXXXXXXXXXXXXXXXXXGDDLYKDDDDRRKLAG 120
           GSQVPLKKRLDPNERDDDVGSPEEGXXXXXXXXXXXXXXXXXXXGDDLYKDDDDRRKLAG
Sbjct: 61  GSQVPLKKRLDPNERDDDVGSPEEGXXXXXXXXXXXXXXXXXXXGDDLYKDDDDRRKLAG 120

Query: 121 MSELQREMILSDRASKKNDKHLYESLRSKMDKGKAAPSRKENPPPPSSRIRSSARSADRA 180
           MSELQREMILSDRASKKNDKHLYESLRSKMDKGKAAPSRKENPP PSSRIRSSARSADRA
Sbjct: 121 MSELQREMILSDRASKKNDKHLYESLRSKMDKGKAAPSRKENPPLPSSRIRSSARSADRA 180

Query: 181 AAKDDALNELRAKRLKQQDPEAHRKLRDTSRGNANNRRFSPTKRKPFTAPSLSSXXXXXX 240
           AAKDDALNELRAKRLKQQDPEAHRKLRDTSRGNANNRRFSPTKRKPFTAPSLSSXXXXXX
Sbjct: 181 AAKDDALNELRAKRLKQQDPEAHRKLRDTSRGNANNRRFSPTKRKPFTAPSLSSXXXXXX 240

Query: 241 XXXFQSDDEGSTGDGGMIDSDDERTMPGSNGPTFDDIKEITIRRSKLAKWLMEPFFEELI 300
           XXXFQSDDEGSTGDGGMIDSDDERTMPGSNGPTFDDIKEITIRRSKLAKWLMEPFFEELI
Sbjct: 241 XXXFQSDDEGSTGDGGMIDSDDERTMPGSNGPTFDDIKEITIRRSKLAKWLMEPFFEELI 300

Query: 301 VGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNESSAARWQ 360
           VGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNESSAARWQ
Sbjct: 301 VGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNESSAARWQ 360

Query: 361 MAMVSDSGPLEDEYKQWVKEVERTGGRMLSKQDILEKKEAIQKANNFVYSAATVKQMLQE 420
           MAMVSDSGPLEDEYKQWVKEVERTGGRMLSKQDILEKKEAIQKANNFVYSAATVKQMLQE
Sbjct: 361 MAMVSDSGPLEDEYKQWVKEVERTGGRMLSKQDILEKKEAIQKANNFVYSAATVKQMLQE 420

Query: 421 KKSASSRPLNIAAEKDRLRNQMDVALSKNNEAEVERIKAKLRQLDASRRSQMKDAKAIRL 480
           KKSASSRPLNIAAEKDRLRNQMDVALSKNNEAEVERIKAKLRQLDASRRSQMKDAKAIRL
Sbjct: 421 KKSASSRPLNIAAEKDRLRNQMDVALSKNNEAEVERIKAKLRQLDASRRSQMKDAKAIRL 480

Query: 481 SEMNRKNRVENFKNASELRPTKDLKAGEAGYDPFSRRWTRSRNYYVSNAGQVDGAAEAAG 540
           SEMNRKNRVENFKNASELRPTKDLKAGEAGYDPFSRRWTRSRNYYVSNAGQVDGAAEAAG
Sbjct: 481 SEMNRKNRVENFKNASELRPTKDLKAGEAGYDPFSRRWTRSRNYYVSNAGQVDGAAEAAG 540

Query: 541 NSDNITPASETTGTXXXXXXXXXXXXXXXXXAGAGKLVDTNAPVDGGTESNLLHNFELPI 600
           N+DNITPA E+TGT XXXXXXXXXXXXXXXXAGAGKLVDTNAPVDGGTESNLLHNFELPI
Sbjct: 541 NNDNITPALESTGTGXXXXXXXXXXXXXXXXAGAGKLVDTNAPVDGGTESNLLHNFELPI 600

Query: 601 SLAVLQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL 658
           SL VLQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL
Sbjct: 601 SLTVLQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL 657

[Close]

BLAST of Carg05778 vs. NCBI nr
Match: XP_022929443.1 (protein RTF1 homolog [Cucurbita moschata] >XP_022929444.1 protein RTF1 homolog [Cucurbita moschata] >XP_022929445.1 protein RTF1 homolog [Cucurbita moschata])

HSP 1 Score: 1135.2 bits (2935), Expect = 0.0e+00
Identity = 651/657 (99.09%), Postives = 651/657 (99.09%), Query Frame = 0


Query: 1   MADLENLLLEAAGRTKASGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDERGYASRKPS 60
           MADLENLLLEAAGRTKASGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDERGYASRKPS
Sbjct: 1   MADLENLLLEAAGRTKASGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDERGYASRKPS 60

Query: 61  GSQVPLKKRLDPNERDDDVGSPEEGXXXXXXXXXXXXXXXXXXXGDDLYKDDDDRRKLAG 120
           GSQVPLKKRLDPNERDDDVGSPEEGXXXXXXXXXXXXXXXXXXXGDDLYKDDDDRRKLAG
Sbjct: 61  GSQVPLKKRLDPNERDDDVGSPEEGXXXXXXXXXXXXXXXXXXXGDDLYKDDDDRRKLAG 120

Query: 121 MSELQREMILSDRASKKNDKHLYESLRSKMDKGKAAPSRKENPPPPSSRIRSSARSADRA 180
           MSELQREMILSDRASKKNDKHLYESLRSKMDKGKAAPSRKENPP PSSRIRSSARSADRA
Sbjct: 121 MSELQREMILSDRASKKNDKHLYESLRSKMDKGKAAPSRKENPPLPSSRIRSSARSADRA 180

Query: 181 AAKDDALNELRAKRLKQQDPEAHRKLRDTSRGNANNRRFSPTKRKPFTAPSLSSXXXXXX 240
           AAKDDALNELRAKRLKQQDPEAHRKLRDTSRGNANNRRFSPTKRKPFTAPSLSSXXXXXX
Sbjct: 181 AAKDDALNELRAKRLKQQDPEAHRKLRDTSRGNANNRRFSPTKRKPFTAPSLSSXXXXXX 240

Query: 241 XXXFQSDDEGSTGDGGMIDSDDERTMPGSNGPTFDDIKEITIRRSKLAKWLMEPFFEELI 300
           XXXFQSDDEGSTGDGGMIDSDDERTMPGSNGPTFDDIKEITIRRSKLAKWLMEPFFEELI
Sbjct: 241 XXXFQSDDEGSTGDGGMIDSDDERTMPGSNGPTFDDIKEITIRRSKLAKWLMEPFFEELI 300

Query: 301 VGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNESSAARWQ 360
           VGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNESSAARWQ
Sbjct: 301 VGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNESSAARWQ 360

Query: 361 MAMVSDSGPLEDEYKQWVKEVERTGGRMLSKQDILEKKEAIQKANNFVYSAATVKQMLQE 420
           MAMVSDSGPLEDEYKQWVKEVERTGGRMLSKQDILEKKEAIQKANNFVYSAATVKQMLQE
Sbjct: 361 MAMVSDSGPLEDEYKQWVKEVERTGGRMLSKQDILEKKEAIQKANNFVYSAATVKQMLQE 420

Query: 421 KKSASSRPLNIAAEKDRLRNQMDVALSKNNEAEVERIKAKLRQLDASRRSQMKDAKAIRL 480
           KKSASSRPLNIAAEKDRLRNQMDVALSKNNEAEVERIKAKLRQLDASRRSQMKDAKAIRL
Sbjct: 421 KKSASSRPLNIAAEKDRLRNQMDVALSKNNEAEVERIKAKLRQLDASRRSQMKDAKAIRL 480

Query: 481 SEMNRKNRVENFKNASELRPTKDLKAGEAGYDPFSRRWTRSRNYYVSNAGQVDGAAEAAG 540
           SEMNRKNRVENFKNASELRPTKDLKAGEAGYDPFSRRWTRSRNYYVSNAGQVDGAAEAAG
Sbjct: 481 SEMNRKNRVENFKNASELRPTKDLKAGEAGYDPFSRRWTRSRNYYVSNAGQVDGAAEAAG 540

Query: 541 NSDNITPASETTGTXXXXXXXXXXXXXXXXXAGAGKLVDTNAPVDGGTESNLLHNFELPI 600
           NSDNITPAS TTG XXXXXXXXXXXXXXXXX  AGKLVDTNAPVDGGTESNLLHNFELPI
Sbjct: 541 NSDNITPASVTTGXXXXXXXXXXXXXXXXXXXXAGKLVDTNAPVDGGTESNLLHNFELPI 600

Query: 601 SLAVLQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL 658
           SL VLQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL
Sbjct: 601 SLTVLQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL 657

[Close]

BLAST of Carg05778 vs. NCBI nr
Match: XP_022984183.1 (protein RTF1 homolog [Cucurbita maxima] >XP_022984184.1 protein RTF1 homolog [Cucurbita maxima] >XP_022984185.1 protein RTF1 homolog [Cucurbita maxima])

HSP 1 Score: 1120.1 bits (2896), Expect = 0.0e+00
Identity = 645/657 (98.17%), Postives = 645/657 (98.17%), Query Frame = 0


Query: 1   MADLENLLLEAAGRTKASGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDERGYASRKPS 60
           MADLENLLLEAAGRTKASGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDERGYASRKPS
Sbjct: 1   MADLENLLLEAAGRTKASGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDERGYASRKPS 60

Query: 61  GSQVPLKKRLDPNERDDDVGSPEEGXXXXXXXXXXXXXXXXXXXGDDLYKDDDDRRKLAG 120
           GSQVPLKKRLDPNERDDDVGSPEEGXXXXXXXXXXXXXXXXXXXGDDLYKDDDDRRKLAG
Sbjct: 61  GSQVPLKKRLDPNERDDDVGSPEEGXXXXXXXXXXXXXXXXXXXGDDLYKDDDDRRKLAG 120

Query: 121 MSELQREMILSDRASKKNDKHLYESLRSKMDKGKAAPSRKENPPPPSSRIRSSARSADRA 180
           MSELQREMILSDRASKKNDKHLYESLRSKMDKGKAAPSRKENPP PSSRIRSSARSADRA
Sbjct: 121 MSELQREMILSDRASKKNDKHLYESLRSKMDKGKAAPSRKENPPLPSSRIRSSARSADRA 180

Query: 181 AAKDDALNELRAKRLKQQDPEAHRKLRDTSRGNANNRRFSPTKRKPFTAPSLSSXXXXXX 240
           AAKDDALNELRAKRLKQQDPEAHRKLRDTSRGNANNRRFSPTKRKPFTAPSLSSXXXXXX
Sbjct: 181 AAKDDALNELRAKRLKQQDPEAHRKLRDTSRGNANNRRFSPTKRKPFTAPSLSSXXXXXX 240

Query: 241 XXXFQSDDEGSTGDGGMIDSDDERTMPGSNGPTFDDIKEITIRRSKLAKWLMEPFFEELI 300
           XXXFQSDDEGSTGDGGMIDSDDERTMPGSNGPTFDDIKEITIRRSKLAKWLMEPFFEELI
Sbjct: 241 XXXFQSDDEGSTGDGGMIDSDDERTMPGSNGPTFDDIKEITIRRSKLAKWLMEPFFEELI 300

Query: 301 VGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNESSAARWQ 360
           VGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNESSAARWQ
Sbjct: 301 VGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNESSAARWQ 360

Query: 361 MAMVSDSGPLEDEYKQWVKEVERTGGRMLSKQDILEKKEAIQKANNFVYSAATVKQMLQE 420
           MAMVSDS PLEDEYKQWVKEVERTGGRMLSKQDILEKKEAIQKANNFVYSAATVKQMLQE
Sbjct: 361 MAMVSDSVPLEDEYKQWVKEVERTGGRMLSKQDILEKKEAIQKANNFVYSAATVKQMLQE 420

Query: 421 KKSASSRPLNIAAEKDRLRNQMDVALSKNNEAEVERIKAKLRQLDASRRSQMKDAKAIRL 480
           KK ASSRPLNIAAEKDRLRNQMDVALSKNNEAEVERIKAKLRQLDASRRSQMKDAKAIRL
Sbjct: 421 KKFASSRPLNIAAEKDRLRNQMDVALSKNNEAEVERIKAKLRQLDASRRSQMKDAKAIRL 480

Query: 481 SEMNRKNRVENFKNASELRPTKDLKAGEAGYDPFSRRWTRSRNYYVSNAGQVDGAAEAAG 540
           SEMNRKNRVENFKNASELRPTKDLKAGEAGYDPFSRRWTRSRNYYVSNAGQVDGAAEAAG
Sbjct: 481 SEMNRKNRVENFKNASELRPTKDLKAGEAGYDPFSRRWTRSRNYYVSNAGQVDGAAEAAG 540

Query: 541 NSDNITPASETTGTXXXXXXXXXXXXXXXXXAGAGKLVDTNAPVDGGTESNLLHNFELPI 600
           NSDNITPASE    XXXXXXXXXXXXXXXXX    KLVDTNAPVDGGTESNLLHNFELPI
Sbjct: 541 NSDNITPASEXXXXXXXXXXXXXXXXXXXXXXXXXKLVDTNAPVDGGTESNLLHNFELPI 600

Query: 601 SLAVLQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL 658
           SL VLQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL
Sbjct: 601 SLTVLQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL 657

[Close]

BLAST of Carg05778 vs. NCBI nr
Match: XP_004149150.1 (PREDICTED: RNA polymerase-associated protein RTF1 homolog [Cucumis sativus] >XP_011653135.1 PREDICTED: RNA polymerase-associated protein RTF1 homolog [Cucumis sativus] >KGN53247.1 hypothetical protein Csa_4G038650 [Cucumis sativus])

HSP 1 Score: 1017.7 bits (2630), Expect = 1.8e-293
Identity = 577/660 (87.42%), Postives = 600/660 (90.91%), Query Frame = 0


Query: 1   MADLENLLLEAAGRTKASGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDERGYASRKPS 60
           MADLENLLLEAAGRT A+GRNRHSHPPSRRQREGSYSDAGS          RGYASRKPS
Sbjct: 1   MADLENLLLEAAGRTNAAGRNRHSHPPSRRQREGSYSDAGSXXXXXXXXXXRGYASRKPS 60

Query: 61  GSQVPLKKRLDPNERDDDVGSPEEGXXXXXXXXXXXXXXXXXXXGDDLYKDDDDRRKLAG 120
           GSQVPLKKRLDP ERDDD GS    XXXXXXXXXXXXXXXXXXX         DRRKLAG
Sbjct: 61  GSQVPLKKRLDPTERDDDGGSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRRKLAG 120

Query: 121 MSELQREMILSDRASKKNDKHLYESLRSKMDKGKAAPSRKENPPPPSSRIRSSARSADRA 180
           MSELQREMILSDRASKKNDKHLYESLR+KMDKGK+APSRKE PP PSSRIRSSARSADRA
Sbjct: 121 MSELQREMILSDRASKKNDKHLYESLRAKMDKGKSAPSRKETPPLPSSRIRSSARSADRA 180

Query: 181 AAKDDALNELRAKRLKQQDPEAHRKLRDTSRGNANNRRFSPTKRKPFTAPSLSSXXXXXX 240
           AAKDDALNELRAKRLKQQDPEAHRKLRD SRGNAN+RRFSPTKRKPFTAPSLSSXXXXXX
Sbjct: 181 AAKDDALNELRAKRLKQQDPEAHRKLRDASRGNANSRRFSPTKRKPFTAPSLSSXXXXXX 240

Query: 241 XXXFQSDDEGSTGDGGMIDSDDERTMPGSNGPTFDDIKEITIRRSKLAKWLMEPFFEELI 300
           XXXFQSDDEGSTGDGGMIDSDDER++PGS+GPTF+DIKE+TIRRSKLAKWLMEPFFEELI
Sbjct: 241 XXXFQSDDEGSTGDGGMIDSDDERSIPGSDGPTFEDIKEVTIRRSKLAKWLMEPFFEELI 300

Query: 301 VGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNESSAARWQ 360
           VGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNE+SAARWQ
Sbjct: 301 VGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNEASAARWQ 360

Query: 361 MAMVSDSGPLEDEYKQWVKEVERTGGRMLSKQDILEKKEAIQKANNFVYSAATVKQMLQE 420
           MAMVSDS PLEDEYKQWVKEVERTGGRMLSKQDILEKKEAIQK NNFVYSAATVKQMLQ+
Sbjct: 361 MAMVSDSAPLEDEYKQWVKEVERTGGRMLSKQDILEKKEAIQKVNNFVYSAATVKQMLQD 420

Query: 421 KKSASSRPLNIAAEKDRLRNQMDVALSKNNEAEVERIKAKLRQLDASRRSQMKDAKAIRL 480
           KKSAS+RPLNIAAEKDRLR +MDVA+SKN+EAEVERIK +L+QL+ASRR QMKDAKAIRL
Sbjct: 421 KKSASARPLNIAAEKDRLRREMDVAVSKNDEAEVERIKTRLQQLEASRRLQMKDAKAIRL 480

Query: 481 SEMNRKNRVENFKNASELRPTKDLKAGEAGYDPFSRRWTRSRNYYVSNAGQVDGAAEAAG 540
           +EMNRKNRVENFKNASELRP KDLKAGEAGYDPFSRRWTRSRNYYVSNAG+ +GAAEAAG
Sbjct: 481 AEMNRKNRVENFKNASELRPLKDLKAGEAGYDPFSRRWTRSRNYYVSNAGEANGAAEAAG 540

Query: 541 NSDNITPASETTGT---XXXXXXXXXXXXXXXXXAGAGKLVDTNAPVDGGTESNLLHNFE 600
           NSDN+TPA E T T                    AGAGKLVDTNAPVDGGTESN LHNFE
Sbjct: 541 NSDNVTPALENTRTEAGGTSDAGMAATAAALEAAAGAGKLVDTNAPVDGGTESNSLHNFE 600

Query: 601 LPISLAVLQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL 658
           LPISLA+LQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL
Sbjct: 601 LPISLAMLQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL 660

[Close]

BLAST of Carg05778 vs. NCBI nr
Match: XP_022136687.1 (protein RTF1 homolog [Momordica charantia])

HSP 1 Score: 969.9 bits (2506), Expect = 4.3e-279
Identity = 557/660 (84.39%), Postives = 578/660 (87.58%), Query Frame = 0


Query: 1   MADLENLLLEAAGRTKASGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDERGYASRKPS 60
           MADLENLLLEAAGRT A+GRNRHSHPPSRRQREGSYSDAGS          RGYASRKPS
Sbjct: 5   MADLENLLLEAAGRTNATGRNRHSHPPSRRQREGSYSDAGSXXXXXXXXXXRGYASRKPS 64

Query: 61  GSQVPLKKRLDPNERDDDVGSPEEGXXXXXXXXXXXXXXXXXXXGDDLYKDDDDRRKLAG 120
           GSQVPLKKRLDP ERDDDVG     XXXXXXXXXXXXXXXXXXX         DRRKLAG
Sbjct: 65  GSQVPLKKRLDPTERDDDVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRRKLAG 124

Query: 121 MSELQREMILSDRASKKNDKHLYESLRSKMDKGKAAPSRKENPPPPSSRIRSSARSADRA 180
           MSELQREMILSDRASKKNDKHLYESLR+KMDKGK APSRKE PP PSSRIRSSARSADRA
Sbjct: 125 MSELQREMILSDRASKKNDKHLYESLRAKMDKGKTAPSRKETPPLPSSRIRSSARSADRA 184

Query: 181 AAKDDALNELRAKRLKQQDPEAHRKLRDTSRGNANNRRFSPTKRKPFTAPSLSSXXXXXX 240
           AAKDDALNELRAKRLKQQDPEAHRKLRD SRGNANNRRFSP KRK FTAPSL  XXXXXX
Sbjct: 185 AAKDDALNELRAKRLKQQDPEAHRKLRDASRGNANNRRFSPMKRKSFTAPSLXXXXXXXX 244

Query: 241 XXXFQSDDEGSTGDGGMIDSDDERTMPGSNGPTFDDIKEITIRRSKLAKWLMEPFFEELI 300
           XXX        TGDGGMIDSDD+R+MPGS+GPTF+DIKEITIRRSKL KW MEPFFEELI
Sbjct: 245 XXXXXXXXXXXTGDGGMIDSDDDRSMPGSDGPTFEDIKEITIRRSKLGKWFMEPFFEELI 304

Query: 301 VGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNESSAARWQ 360
           VGCFVRVGIGRSRSG IYRLCLVRNVDATEPDRQYKLENK THKYLNVIWGNESSAARWQ
Sbjct: 305 VGCFVRVGIGRSRSGSIYRLCLVRNVDATEPDRQYKLENKTTHKYLNVIWGNESSAARWQ 364

Query: 361 MAMVSDSGPLEDEYKQWVKEVERTGGRMLSKQDILEKKEAIQKANNFVYSAATVKQMLQE 420
           MAMVSDS P EDEYKQWVKEVE+TGGRMLSKQDILEKKEAIQK NNFVYSAATVKQMLQE
Sbjct: 365 MAMVSDSPPHEDEYKQWVKEVEQTGGRMLSKQDILEKKEAIQKVNNFVYSAATVKQMLQE 424

Query: 421 KKSASSRPLNIAAEKDRLRNQMDVALSKNNEAEVERIKAKLRQLDASRRSQMKDAKAIRL 480
           KKSASSRPLNIAAEKDRLR +MDVALSKN++AEVERI A+L+QL+ASRR QMKDAKAI+L
Sbjct: 425 KKSASSRPLNIAAEKDRLRREMDVALSKNDDAEVERINARLQQLEASRRLQMKDAKAIKL 484

Query: 481 SEMNRKNRVENFKNASELRPTKDLKAGEAGYDPFSRRWTRSRNYYVSNAGQVDGAAEAAG 540
           +EMNRKNRVENFKNAS LRP KDLKAGEAGYDPFSRRWTRSRNYYVSNAG+ +GAAE  G
Sbjct: 485 AEMNRKNRVENFKNASGLRPVKDLKAGEAGYDPFSRRWTRSRNYYVSNAGEANGAAETGG 544

Query: 541 NSDNITPASETTGT---XXXXXXXXXXXXXXXXXAGAGKLVDTNAPVDGGTESNLLHNFE 600
           N+DN+ PASE+  T                    AGAGKLVDT+APVDGGTESNLLHNFE
Sbjct: 545 NNDNLMPASESNRTGSGVIAEAGMAATAAALVAAAGAGKLVDTSAPVDGGTESNLLHNFE 604

Query: 601 LPISLAVLQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL 658
           LPISLAVLQKFGG  GAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL
Sbjct: 605 LPISLAVLQKFGGPQGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL 664

[Close]

BLAST of Carg05778 vs. TAIR10
Match: AT1G61040.1 (plus-3 domain-containing protein)

HSP 1 Score: 722.6 bits (1864), Expect = 2.2e-208
Identity = 455/659 (69.04%), Postives = 524/659 (79.51%), Query Frame = 0


Query: 1   MADLENLLLEAAGRTKASGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDERGYASRKPS 60
           M DLENLLLEAAGRT ++GR+R  HPPS R+REGSYSD  SDSR DDSD++RGYASRKPS
Sbjct: 1   MGDLENLLLEAAGRTNSAGRSR--HPPSSRRREGSYSDGSSDSR-DDSDEDRGYASRKPS 60

Query: 61  GSQVPLKKRLDPNERDDDVGSPEEGXXXXXXXXXXXXXXXXXXXGDDLYKDDDDRRKLAG 120
           GSQVPLKKRL+     +D       XXXXXXXXXXXXXXXXXXXGDDLYK+++DR+KLAG
Sbjct: 61  GSQVPLKKRLEAER--EDRXXXXXXXXXXXXXXXXXXXXXXXXXGDDLYKNEEDRQKLAG 120

Query: 121 MSELQREMILSDRASKKNDKHLYESLRSKMDKGKAAPSRKENPPPPSSR-IRSSARSADR 180
           M+E QREMILS+RA KK DK+  E LRSK +  K   S+KE  P P+SR +RSSARSADR
Sbjct: 121 MTEFQREMILSERADKKGDKNFTEKLRSKRESEKTPVSKKETQPLPASRGVRSSARSADR 180

Query: 181 AAAKDDALNELRAKRLKQQDPEAHRKLRDTSRGNANNRRFSPTKRKPFTAPSLSSXXXXX 240
           AAAKDDALNELRAKR+KQQDP A RKLRD S+G + +R FS TKRKP    S   XXXXX
Sbjct: 181 AAAKDDALNELRAKRMKQQDPAALRKLRDASKGGSGSRDFSSTKRKPLA--SSXXXXXXX 240

Query: 241 XXXXFQSDDEGSTGDGGMIDSDDERTMPGSNGPTFDDIKEITIRRSKLAKWLMEPFFEEL 300
           XXXX          +GGM+DSDD+R    S+ PTF+D+KE+TIRRSKLAKWLMEPFFEEL
Sbjct: 241 XXXXXXXXXXXXXXNGGMLDSDDDR----SDVPTFEDVKEVTIRRSKLAKWLMEPFFEEL 300

Query: 301 IVGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNESSAARW 360
           IVGCFVRVGIGRS+SGPIYRLC V+NVDAT+PD+ YKLENK THKYLNV+WGNE+SAARW
Sbjct: 301 IVGCFVRVGIGRSKSGPIYRLCWVKNVDATDPDKTYKLENKTTHKYLNVVWGNETSAARW 360

Query: 361 QMAMVSDSGPLEDEYKQWVKEVERTGGRMLSKQDILEKKEAIQKANNFVYSAATVKQMLQ 420
           QMAM+SD  PLE+EY+QW++EVERT GRM +KQDI EKKEAIQ+ N+FVYSA TVKQMLQ
Sbjct: 361 QMAMISDGHPLEEEYRQWIREVERTNGRMPTKQDISEKKEAIQRTNSFVYSAETVKQMLQ 420

Query: 421 EKKSASSRPLNIAAEKDRLRNQMDVALSKNNEAEVERIKAKLRQLDASRRSQMKDAKAIR 480
           EKKSAS RP+N+AAEKDRLR ++++A SKN+EA VERIK+K++QLDASR  +  D KA++
Sbjct: 421 EKKSASVRPMNVAAEKDRLRKELEIAQSKNDEAGVERIKSKIKQLDASRNKKGVDKKALK 480

Query: 481 LSEMNRKNRVENFKNASELRP-TKDLKAGEAGYDPFSRRWTRSRNYYVSNAGQVDGAAEA 540
           L+EMN+KNR ENFKNASE++  T  LKAGEAGYDPFSRRWTRS NYY       DG    
Sbjct: 481 LAEMNKKNRAENFKNASEVKSITASLKAGEAGYDPFSRRWTRSSNYYNGKNKGKDGEENE 540

Query: 541 AGNSDNITPASETTGTXXXXXXXXXXXXXXXXXAGAGKLVDTNAPVDGGTESNLLHNFEL 600
           A        A+  T  XXXXXXXXXXXXXXXXX   GKL+DT AP+  G E N LHNFEL
Sbjct: 541 AA-----VAAAVETXXXXXXXXXXXXXXXXXXXXXXGKLIDTRAPIGQGAEHNQLHNFEL 600

Query: 601 PISLAVLQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL 658
            +SL  LQK+GG  G Q  F+ARKQ  EATVG +V ENDG+RH LTLTVSDYKRRRGLL
Sbjct: 601 SLSLTALQKYGGPQGVQKAFMARKQLTEATVGCRVAENDGKRHGLTLTVSDYKRRRGLL 643

[Close]

BLAST of Carg05778 vs. Swiss-Prot
Match: sp|Q9C950|VIP5_ARATH (Protein RTF1 homolog OS=Arabidopsis thaliana OX=3702 GN=VIP5 PE=1 SV=1)

HSP 1 Score: 722.6 bits (1864), Expect = 3.9e-207
Identity = 455/659 (69.04%), Postives = 524/659 (79.51%), Query Frame = 0


Query: 1   MADLENLLLEAAGRTKASGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDERGYASRKPS 60
           M DLENLLLEAAGRT ++GR+R  HPPS R+REGSYSD  SDSR DDSD++RGYASRKPS
Sbjct: 1   MGDLENLLLEAAGRTNSAGRSR--HPPSSRRREGSYSDGSSDSR-DDSDEDRGYASRKPS 60

Query: 61  GSQVPLKKRLDPNERDDDVGSPEEGXXXXXXXXXXXXXXXXXXXGDDLYKDDDDRRKLAG 120
           GSQVPLKKRL+     +D       XXXXXXXXXXXXXXXXXXXGDDLYK+++DR+KLAG
Sbjct: 61  GSQVPLKKRLEAER--EDRXXXXXXXXXXXXXXXXXXXXXXXXXGDDLYKNEEDRQKLAG 120

Query: 121 MSELQREMILSDRASKKNDKHLYESLRSKMDKGKAAPSRKENPPPPSSR-IRSSARSADR 180
           M+E QREMILS+RA KK DK+  E LRSK +  K   S+KE  P P+SR +RSSARSADR
Sbjct: 121 MTEFQREMILSERADKKGDKNFTEKLRSKRESEKTPVSKKETQPLPASRGVRSSARSADR 180

Query: 181 AAAKDDALNELRAKRLKQQDPEAHRKLRDTSRGNANNRRFSPTKRKPFTAPSLSSXXXXX 240
           AAAKDDALNELRAKR+KQQDP A RKLRD S+G + +R FS TKRKP    S   XXXXX
Sbjct: 181 AAAKDDALNELRAKRMKQQDPAALRKLRDASKGGSGSRDFSSTKRKPLA--SSXXXXXXX 240

Query: 241 XXXXFQSDDEGSTGDGGMIDSDDERTMPGSNGPTFDDIKEITIRRSKLAKWLMEPFFEEL 300
           XXXX          +GGM+DSDD+R    S+ PTF+D+KE+TIRRSKLAKWLMEPFFEEL
Sbjct: 241 XXXXXXXXXXXXXXNGGMLDSDDDR----SDVPTFEDVKEVTIRRSKLAKWLMEPFFEEL 300

Query: 301 IVGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNESSAARW 360
           IVGCFVRVGIGRS+SGPIYRLC V+NVDAT+PD+ YKLENK THKYLNV+WGNE+SAARW
Sbjct: 301 IVGCFVRVGIGRSKSGPIYRLCWVKNVDATDPDKTYKLENKTTHKYLNVVWGNETSAARW 360

Query: 361 QMAMVSDSGPLEDEYKQWVKEVERTGGRMLSKQDILEKKEAIQKANNFVYSAATVKQMLQ 420
           QMAM+SD  PLE+EY+QW++EVERT GRM +KQDI EKKEAIQ+ N+FVYSA TVKQMLQ
Sbjct: 361 QMAMISDGHPLEEEYRQWIREVERTNGRMPTKQDISEKKEAIQRTNSFVYSAETVKQMLQ 420

Query: 421 EKKSASSRPLNIAAEKDRLRNQMDVALSKNNEAEVERIKAKLRQLDASRRSQMKDAKAIR 480
           EKKSAS RP+N+AAEKDRLR ++++A SKN+EA VERIK+K++QLDASR  +  D KA++
Sbjct: 421 EKKSASVRPMNVAAEKDRLRKELEIAQSKNDEAGVERIKSKIKQLDASRNKKGVDKKALK 480

Query: 481 LSEMNRKNRVENFKNASELRP-TKDLKAGEAGYDPFSRRWTRSRNYYVSNAGQVDGAAEA 540
           L+EMN+KNR ENFKNASE++  T  LKAGEAGYDPFSRRWTRS NYY       DG    
Sbjct: 481 LAEMNKKNRAENFKNASEVKSITASLKAGEAGYDPFSRRWTRSSNYYNGKNKGKDGEENE 540

Query: 541 AGNSDNITPASETTGTXXXXXXXXXXXXXXXXXAGAGKLVDTNAPVDGGTESNLLHNFEL 600
           A        A+  T  XXXXXXXXXXXXXXXXX   GKL+DT AP+  G E N LHNFEL
Sbjct: 541 AA-----VAAAVETXXXXXXXXXXXXXXXXXXXXXXGKLIDTRAPIGQGAEHNQLHNFEL 600

Query: 601 PISLAVLQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL 658
            +SL  LQK+GG  G Q  F+ARKQ  EATVG +V ENDG+RH LTLTVSDYKRRRGLL
Sbjct: 601 SLSLTALQKYGGPQGVQKAFMARKQLTEATVGCRVAENDGKRHGLTLTVSDYKRRRGLL 643

[Close]

BLAST of Carg05778 vs. Swiss-Prot
Match: sp|A2AQ19|RTF1_MOUSE (RNA polymerase-associated protein RTF1 homolog OS=Mus musculus OX=10090 GN=Rtf1 PE=1 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 3.8e-21
Identity = 104/390 (26.67%), Postives = 180/390 (46.15%), Query Frame = 0


Query: 275 DDIKEITIRRSKLAKWLMEPFFEELIVGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQ 334
           +++  + + R KL +W   PFF + + GCFVR+GIG   S P+YR+  +  V   E  + 
Sbjct: 362 EELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNSKPVYRVAEITGV--VETAKV 421

Query: 335 YKLENKITHKYLNVIWGNESSAARWQMAMVSDSGPLEDEYKQWVKEVERTGGRMLSKQDI 394
           Y+L    T+K L +  GN+    R  +  VS+    E E+ +W KE   + G  L   D 
Sbjct: 422 YQLGGTRTNKGLQLRHGNDQRVFR--LEFVSNQEFTESEFMKW-KEAMFSAGMQLPTLDE 481

Query: 395 LEKKE-AIQKANNFVYSAATVKQMLQEKKSASSRPLNIAAEKDRLRNQMDVALSKNNEAE 454
           + KKE +I++A N+ ++   ++++++EK+     P N A +K +L  +  +A    ++ +
Sbjct: 482 INKKELSIKEALNYKFNDQDIEEIVKEKERFRKAPPNYAMKKTQLLKEKAMAEDLGDQDK 541

Query: 455 VERIKAKLRQL----DASRRSQMKDAKAIRLSEMNRKNRVENFKNASELRPTKDLKAGEA 514
            ++I+ +L +L    +A  R + K+  AI  S +N++NR  N   + +    +       
Sbjct: 542 AKQIQDQLNELEERAEALDRQRTKNISAI--SYINQRNREWNIVESEKALVAESHNMRNQ 601

Query: 515 GYDPFSRRWTRSRNYYVSNAGQVDGAAEAAGNSDNITPASETTGTXXXXXXXXXXXXXXX 574
             DPF+RR  + +   VSN+   D A +AA     +   +   G+               
Sbjct: 602 QMDPFTRR--QCKPTIVSNSR--DPAVQAA----ILAQLNAKYGS------GVLPDAPKE 661

Query: 575 XXAGAGKLVDTNAPVDGGTESNL--LHNFELPISLAVLQKFGGALGAQAGFLARKQRIEA 634
              G GK  D N+        +L  +H+F++ I L V      AL              A
Sbjct: 662 MSKGQGKDKDLNSKTASDLSEDLFKVHDFDVKIDLQVPSSESKAL--------------A 715

Query: 635 TVGRQVPENDGRRHALTLTVSDYKRRRGLL 658
              +  P  DG     +L + DYK+RRGL+
Sbjct: 722 ITSKAPPAKDGAPRR-SLNLEDYKKRRGLI 715

[Close]

BLAST of Carg05778 vs. Swiss-Prot
Match: sp|Q92541|RTF1_HUMAN (RNA polymerase-associated protein RTF1 homolog OS=Homo sapiens OX=9606 GN=RTF1 PE=1 SV=4)

HSP 1 Score: 104.0 bits (258), Expect = 6.5e-21
Identity = 104/390 (26.67%), Postives = 180/390 (46.15%), Query Frame = 0


Query: 275 DDIKEITIRRSKLAKWLMEPFFEELIVGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQ 334
           +++  + + R KL +W   PFF + + GCFVR+GIG   S P+YR+  +  V   E  + 
Sbjct: 357 EELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNSKPVYRVAEITGV--VETAKV 416

Query: 335 YKLENKITHKYLNVIWGNESSAARWQMAMVSDSGPLEDEYKQWVKEVERTGGRMLSKQDI 394
           Y+L    T+K L +  GN+    R  +  VS+    E E+ +W KE   + G  L   D 
Sbjct: 417 YQLGGTRTNKGLQLRHGNDQRVFR--LEFVSNQEFTESEFMKW-KEAMFSAGMQLPTLDE 476

Query: 395 LEKKE-AIQKANNFVYSAATVKQMLQEKKSASSRPLNIAAEKDRLRNQMDVALSKNNEAE 454
           + KKE +I++A N+ ++   ++++++EK+     P N A +K +L  +  +A    ++ +
Sbjct: 477 INKKELSIKEALNYKFNDQDIEEIVKEKERFRKAPPNYAMKKTQLLKEKAMAEDLGDQDK 536

Query: 455 VERIKAKLRQL----DASRRSQMKDAKAIRLSEMNRKNRVENFKNASELRPTKDLKAGEA 514
            ++I+ +L +L    +A  R + K+  AI  S +N++NR  N   + +    +       
Sbjct: 537 AKQIQDQLNELEERAEALDRQRTKNISAI--SYINQRNREWNIVESEKALVAESHNMKNQ 596

Query: 515 GYDPFSRRWTRSRNYYVSNAGQVDGAAEAAGNSDNITPASETTGTXXXXXXXXXXXXXXX 574
             DPF+RR  + +   VSN+   D A +AA     +   +   G+               
Sbjct: 597 QMDPFTRR--QCKPTIVSNSR--DPAVQAA----ILAQLNAKYGS------GVLPDAPKE 656

Query: 575 XXAGAGKLVDTNAPVDGGTESNL--LHNFELPISLAVLQKFGGALGAQAGFLARKQRIEA 634
              G GK  D N+        +L  +H+F++ I L V      AL              A
Sbjct: 657 MSKGQGKDKDLNSKSASDLSEDLFKVHDFDVKIDLQVPSSESKAL--------------A 710

Query: 635 TVGRQVPENDGRRHALTLTVSDYKRRRGLL 658
              +  P  DG     +L + DYK+RRGL+
Sbjct: 717 ITSKAPPAKDGAPRR-SLNLEDYKKRRGLI 710

[Close]

BLAST of Carg05778 vs. Swiss-Prot
Match: sp|Q5RAD5|RTF1_PONAB (RNA polymerase-associated protein RTF1 homolog (Fragment) OS=Pongo abelii OX=9601 GN=RTF1 PE=2 SV=2)

HSP 1 Score: 96.7 bits (239), Expect = 1.0e-18
Identity = 78/270 (28.89%), Postives = 140/270 (51.85%), Query Frame = 0


Query: 275 DDIKEITIRRSKLAKWLMEPFFEELIVGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQ 334
           +++  + + R KL +W   PFF + + GCFVR+GIG   S P+YR+  +  V   E  + 
Sbjct: 352 EELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNSKPVYRVAEITGV--VETAKV 411

Query: 335 YKLENKITHKYLNVIWGNESSAARWQMAMVSDSGPLEDEYKQWVKEVERTGGRMLSKQDI 394
           Y+L    T+K L +  GN+    R  +  VS+    E E+ +W KE   + G  L   D 
Sbjct: 412 YQLGGTRTNKGLQLRHGNDQRVFR--LEFVSNQEFTESEFMKW-KEAMFSAGMQLPTLDE 471

Query: 395 LEKKE-AIQKANNFVYSAATVKQMLQEKKSASSRPLNIAAEKDRLRNQMDVALSKNNEAE 454
           + KKE +I++A N+ ++   ++++++EK+     P N A +K +L  +  +A    ++ +
Sbjct: 472 INKKELSIKEALNYKFNDQDIEEIVKEKERFRKAPPNYAMKKTQLLKEKAMAEDLGDQDK 531

Query: 455 VERIKAKLRQL----DASRRSQMKDAKAIRLSEMNRKNRVENFKNASELRPTKDLKAGEA 514
            ++I+ +L +L    +A  R + K+  AI  S +N++NR  N   + +    +       
Sbjct: 532 AKQIQDQLNELEERAEALDRQRTKNISAI--SYINQRNREWNIVESEKALVAESHNMKNQ 591

Query: 515 GYDPFSRRWTRSRNYYVSNAGQVDGAAEAA 540
             DPF+RR  + +   VSN+   D A +AA
Sbjct: 592 QMDPFTRR--QCKPTIVSNSR--DPAVQAA 610

[Close]

BLAST of Carg05778 vs. Swiss-Prot
Match: sp|Q9W261|RTF1_DROME (RNA polymerase-associated protein Rtf1 OS=Drosophila melanogaster OX=7227 GN=Rtf1 PE=1 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 4.8e-16
Identity = 69/259 (26.64%), Postives = 132/259 (50.97%), Query Frame = 0


Query: 273 TFDDIKEITIRRSKLAKWLMEPFFEELIVGCFVRVGIGRSRSGPIYRLCLVRNVDATEPD 332
           T +D+ ++ + R K+ +++  P FE  ++ CFVR+ IG +   P+YR+  +  V   E  
Sbjct: 430 TREDLNKLRLSRYKMERFVNLPIFESTVLNCFVRISIGNNGQKPVYRVAEI--VGVVETG 489

Query: 333 RQYKLENKITHKYLNVIWGNESSAARWQMAMVSDSGPLEDEYKQWVKEVERTGGRMLSKQ 392
           + Y L    T++ L +  G +    R  +  +S+    E+E+ +W +  +++  +M +  
Sbjct: 490 KIYSLGTTRTNRGLRLKHGTQERVFR--LEFISNQEFTENEFNKWNEVCQQSHVQMPTID 549

Query: 393 DILEKKEAIQKANNFVYSAATVKQMLQEKKSASSRPLNIAAEKDRLRNQMDVALSKNN-- 452
            I  K+  I+KA N+ +    V ++++EK    +RP N A +K  L  + D A+ + +  
Sbjct: 550 LIAIKQNDIKKALNYEFKDEDVDKIVEEKNRFRNRPTNYAMKKTCLMKERDAAMLRGDYD 609

Query: 453 -----EAEVERIKAKLRQLDASRRSQMKDAKAIRLSEMNRKNRVENFKNA--SELRPTKD 512
                  +++ ++ +  +LD  RRS   +  +  +++ NRK  VE+ + A   E R  K 
Sbjct: 610 IAQDLGQQIDELENRASELD-KRRSHTLNLISY-INDRNRKKNVEDAEKAILEEARANKG 669

Query: 513 LKAGEAGYDPFSRRWTRSR 523
           LK      DPF+RR T+ R
Sbjct: 670 LKIS----DPFTRRITQPR 678

[Close]

BLAST of Carg05778 vs. TrEMBL
Match: tr|A0A0A0KXW1|A0A0A0KXW1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G038650 PE=4 SV=1)

HSP 1 Score: 1017.7 bits (2630), Expect = 1.2e-293
Identity = 577/660 (87.42%), Postives = 600/660 (90.91%), Query Frame = 0


Query: 1   MADLENLLLEAAGRTKASGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDERGYASRKPS 60
           MADLENLLLEAAGRT A+GRNRHSHPPSRRQREGSYSDAGS          RGYASRKPS
Sbjct: 1   MADLENLLLEAAGRTNAAGRNRHSHPPSRRQREGSYSDAGSXXXXXXXXXXRGYASRKPS 60

Query: 61  GSQVPLKKRLDPNERDDDVGSPEEGXXXXXXXXXXXXXXXXXXXGDDLYKDDDDRRKLAG 120
           GSQVPLKKRLDP ERDDD GS    XXXXXXXXXXXXXXXXXXX         DRRKLAG
Sbjct: 61  GSQVPLKKRLDPTERDDDGGSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRRKLAG 120

Query: 121 MSELQREMILSDRASKKNDKHLYESLRSKMDKGKAAPSRKENPPPPSSRIRSSARSADRA 180
           MSELQREMILSDRASKKNDKHLYESLR+KMDKGK+APSRKE PP PSSRIRSSARSADRA
Sbjct: 121 MSELQREMILSDRASKKNDKHLYESLRAKMDKGKSAPSRKETPPLPSSRIRSSARSADRA 180

Query: 181 AAKDDALNELRAKRLKQQDPEAHRKLRDTSRGNANNRRFSPTKRKPFTAPSLSSXXXXXX 240
           AAKDDALNELRAKRLKQQDPEAHRKLRD SRGNAN+RRFSPTKRKPFTAPSLSSXXXXXX
Sbjct: 181 AAKDDALNELRAKRLKQQDPEAHRKLRDASRGNANSRRFSPTKRKPFTAPSLSSXXXXXX 240

Query: 241 XXXFQSDDEGSTGDGGMIDSDDERTMPGSNGPTFDDIKEITIRRSKLAKWLMEPFFEELI 300
           XXXFQSDDEGSTGDGGMIDSDDER++PGS+GPTF+DIKE+TIRRSKLAKWLMEPFFEELI
Sbjct: 241 XXXFQSDDEGSTGDGGMIDSDDERSIPGSDGPTFEDIKEVTIRRSKLAKWLMEPFFEELI 300

Query: 301 VGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNESSAARWQ 360
           VGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNE+SAARWQ
Sbjct: 301 VGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNEASAARWQ 360

Query: 361 MAMVSDSGPLEDEYKQWVKEVERTGGRMLSKQDILEKKEAIQKANNFVYSAATVKQMLQE 420
           MAMVSDS PLEDEYKQWVKEVERTGGRMLSKQDILEKKEAIQK NNFVYSAATVKQMLQ+
Sbjct: 361 MAMVSDSAPLEDEYKQWVKEVERTGGRMLSKQDILEKKEAIQKVNNFVYSAATVKQMLQD 420

Query: 421 KKSASSRPLNIAAEKDRLRNQMDVALSKNNEAEVERIKAKLRQLDASRRSQMKDAKAIRL 480
           KKSAS+RPLNIAAEKDRLR +MDVA+SKN+EAEVERIK +L+QL+ASRR QMKDAKAIRL
Sbjct: 421 KKSASARPLNIAAEKDRLRREMDVAVSKNDEAEVERIKTRLQQLEASRRLQMKDAKAIRL 480

Query: 481 SEMNRKNRVENFKNASELRPTKDLKAGEAGYDPFSRRWTRSRNYYVSNAGQVDGAAEAAG 540
           +EMNRKNRVENFKNASELRP KDLKAGEAGYDPFSRRWTRSRNYYVSNAG+ +GAAEAAG
Sbjct: 481 AEMNRKNRVENFKNASELRPLKDLKAGEAGYDPFSRRWTRSRNYYVSNAGEANGAAEAAG 540

Query: 541 NSDNITPASETTGT---XXXXXXXXXXXXXXXXXAGAGKLVDTNAPVDGGTESNLLHNFE 600
           NSDN+TPA E T T                    AGAGKLVDTNAPVDGGTESN LHNFE
Sbjct: 541 NSDNVTPALENTRTEAGGTSDAGMAATAAALEAAAGAGKLVDTNAPVDGGTESNSLHNFE 600

Query: 601 LPISLAVLQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL 658
           LPISLA+LQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL
Sbjct: 601 LPISLAMLQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL 660

[Close]

BLAST of Carg05778 vs. TrEMBL
Match: tr|A0A1S3BXS8|A0A1S3BXS8_CUCME (protein RTF1 homolog OS=Cucumis melo OX=3656 GN=LOC103494388 PE=4 SV=1)

HSP 1 Score: 957.2 bits (2473), Expect = 1.9e-275
Identity = 552/660 (83.64%), Postives = 574/660 (86.97%), Query Frame = 0


Query: 1   MADLENLLLEAAGRTKASGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDERGYASRKPS 60
           MADLENLLLEAAGRT                                     GYASRKPS
Sbjct: 1   MADLENLLLEAAGRTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYASRKPS 60

Query: 61  GSQVPLKKRLDPNERDDDVGSPEEGXXXXXXXXXXXXXXXXXXXGDDLYKDDDDRRKLAG 120
           GSQVPLKKRLDP ERDDD GSP   XXXXXXXXXXXXXXXXXXX         DRRKLAG
Sbjct: 61  GSQVPLKKRLDPTERDDDGGSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRRKLAG 120

Query: 121 MSELQREMILSDRASKKNDKHLYESLRSKMDKGKAAPSRKENPPPPSSRIRSSARSADRA 180
           MSELQREMILSDRASKKNDKHLYESLR+KMDKGK APSRKE PP PSSRIRSSARSADRA
Sbjct: 121 MSELQREMILSDRASKKNDKHLYESLRAKMDKGKTAPSRKETPPLPSSRIRSSARSADRA 180

Query: 181 AAKDDALNELRAKRLKQQDPEAHRKLRDTSRGNANNRRFSPTKRKPFTAPSLSSXXXXXX 240
           AAKDDALNELRAKRLKQQDPEAHRKLRD SRGN+NNRRFSPTKRKPFTAPSLSSXXXXXX
Sbjct: 181 AAKDDALNELRAKRLKQQDPEAHRKLRDASRGNSNNRRFSPTKRKPFTAPSLSSXXXXXX 240

Query: 241 XXXFQSDDEGSTGDGGMIDSDDERTMPGSNGPTFDDIKEITIRRSKLAKWLMEPFFEELI 300
           XXXFQSDDEGSTGDGGMIDSDDER+MPGS+GPTF+DIKEITIRRSKLAKWLMEPFFEELI
Sbjct: 241 XXXFQSDDEGSTGDGGMIDSDDERSMPGSDGPTFEDIKEITIRRSKLAKWLMEPFFEELI 300

Query: 301 VGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNESSAARWQ 360
           VGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNE+SAARWQ
Sbjct: 301 VGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNENSAARWQ 360

Query: 361 MAMVSDSGPLEDEYKQWVKEVERTGGRMLSKQDILEKKEAIQKANNFVYSAATVKQMLQE 420
           MAMVSDS PLEDEYKQWVKEVERTGGRMLSKQD+LEKK+AIQK NNFVYSAATVKQMLQ+
Sbjct: 361 MAMVSDSAPLEDEYKQWVKEVERTGGRMLSKQDVLEKKDAIQKVNNFVYSAATVKQMLQD 420

Query: 421 KKSASSRPLNIAAEKDRLRNQMDVALSKNNEAEVERIKAKLRQLDASRRSQMKDAKAIRL 480
           KKSAS+RPLNIAAEKDRLR +MDVA+SKN+EAEVERIK +L+QL+ASRR QMKDAKAIRL
Sbjct: 421 KKSASARPLNIAAEKDRLRREMDVAVSKNDEAEVERIKGRLQQLEASRRLQMKDAKAIRL 480

Query: 481 SEMNRKNRVENFKNASELRPTKDLKAGEAGYDPFSRRWTRSRNYYVSNAGQVDGAAEAAG 540
           +EMNRKNRVENFKNASELRP KDLKAGEAGYDPFSRRWTRSRNYYVSNAG+ +GAAEAAG
Sbjct: 481 AEMNRKNRVENFKNASELRPLKDLKAGEAGYDPFSRRWTRSRNYYVSNAGEANGAAEAAG 540

Query: 541 NSDNITPASETTGT---XXXXXXXXXXXXXXXXXAGAGKLVDTNAPVDGGTESNLLHNFE 600
           NSD +TPA E+T T                    AGAGKLVDTNAPVDGGTESN LHNFE
Sbjct: 541 NSDTVTPALESTRTGAGGTSDAGMAATAAALEAAAGAGKLVDTNAPVDGGTESNSLHNFE 600

Query: 601 LPISLAVLQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL 658
           LPISLA+LQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL
Sbjct: 601 LPISLAMLQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL 660

[Close]

BLAST of Carg05778 vs. TrEMBL
Match: tr|K7L2P2|K7L2P2_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100818650 PE=4 SV=1)

HSP 1 Score: 807.4 bits (2084), Expect = 2.4e-230
Identity = 461/659 (69.95%), Postives = 530/659 (80.42%), Query Frame = 0


Query: 1   MADLENLLLEAAGRTKASGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDERGYASRKPS 60
           MADLENLLLEAAGRT  +GRNRHS P SRR+ +G+YSD GSDSRD+DSDDE  YASRKPS
Sbjct: 1   MADLENLLLEAAGRTGTAGRNRHSLPSSRRRHDGAYSDGGSDSRDEDSDDELNYASRKPS 60

Query: 61  GSQVPLKKRLDPNERDDDVGSPEEGXXXXXXXXXXXXXXXXXXXGDDLYKDDDDRRKLAG 120
           GSQVPLKKRLDP ERDDD+GS EE       XXXXXXX      GDDLYKD+DDRRKL+ 
Sbjct: 61  GSQVPLKKRLDPTERDDDLGSQEEA-DDDGRXXXXXXXSDESNIGDDLYKDEDDRRKLSE 120

Query: 121 MSELQREMILSDRASKKNDKHLYESLRSKMDKGKAAPSRKENPPPPSSRIRSSARSADRA 180
           M+ELQREMILSDRA+KK+DK+L   + SK +KGK A  RK++PP  SSR+R+SARSADR 
Sbjct: 121 MTELQREMILSDRATKKDDKNLLGKIASKREKGKVAVPRKQSPPMSSSRMRASARSADR- 180

Query: 181 AAKDDALNELRAKRLKQQDPEAHRKLRDTSRGNANNRRFSPTKRKPFTAPSLSSXXXXXX 240
           +AK+DALNELRAKRLKQQDPEAHR+LR+ SR NA +R FSP KRKPFT      XXXXXX
Sbjct: 181 SAKNDALNELRAKRLKQQDPEAHRRLREASR-NAGSRHFSPPKRKPFTXXXXXXXXXXXX 240

Query: 241 XXXFQSDDEGSTGDGGMIDSDDERTMPGSNGPTFDDIKEITIRRSKLAKWLMEPFFEELI 300
           XXX         GDGG++DSDD+R + GS GP+F D+KEITIRRSKLAKW MEPFFEELI
Sbjct: 241 XXXXXXXXXXXXGDGGIVDSDDDRALAGSEGPSFQDVKEITIRRSKLAKWFMEPFFEELI 300

Query: 301 VGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNESSAARWQ 360
           VGCFVRVGIGRS++GPIYRLC+V+NVDA+EPDRQYKLENK T+KYLNV+WGNESSAARWQ
Sbjct: 301 VGCFVRVGIGRSKTGPIYRLCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNESSAARWQ 360

Query: 361 MAMVSDSGPLEDEYKQWVKEVERTGGRMLSKQDILEKKEAIQKANNFVYSAATVKQMLQE 420
           MAMVSDS PLE+E+KQWVKEV+R+GGRM SKQD+LEKK+AIQKA  FVYSAATVKQMLQE
Sbjct: 361 MAMVSDSAPLEEEFKQWVKEVDRSGGRMPSKQDVLEKKQAIQKAITFVYSAATVKQMLQE 420

Query: 421 KKSASSRPLNIAAEKDRLRNQMDVALSKNNEAEVERIKAKLRQLDASRRSQMKDAKAIRL 480
           KKSAS+RPLN+AAEKDRLR ++++A SK +EAEVERIK +L +L+ASR+++ KDAKA++L
Sbjct: 421 KKSASTRPLNVAAEKDRLRRELEIAQSKYDEAEVERIKTRLLELEASRQAKQKDAKALKL 480

Query: 481 SEMNRKNRVENFKNASELRPTK-DLKAGEAGYDPFSRRWTRSRNYYVSNAGQVDGAAEAA 540
                        NASE++P    LKAGEAGYDPFSRRWTRSRNYY +  G+   A   +
Sbjct: 481 XXXXXXXXXXXXXNASEMKPVNTGLKAGEAGYDPFSRRWTRSRNYYAAKPGEKAAAGNNS 540

Query: 541 GNSDNITPASETTGT-XXXXXXXXXXXXXXXXXAGAGKLVDTNAPVDGGTESNLLHNFEL 600
            N +     S  TG                   AGAGKLVDT+APVD GTESN+LHNFEL
Sbjct: 541 VNGNVAGAGSNGTGAPVTAEAGMVATAAALEAAAGAGKLVDTSAPVDQGTESNMLHNFEL 600

Query: 601 PISLAVLQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL 658
           PISLA+LQKFGGA GAQAGF+ARKQ+IEATVG +V ENDGRRHALTLTVSDYKRRRGLL
Sbjct: 601 PISLALLQKFGGAQGAQAGFMARKQKIEATVGFRVSENDGRRHALTLTVSDYKRRRGLL 656

[Close]

BLAST of Carg05778 vs. TrEMBL
Match: tr|V7CPL2|V7CPL2_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_002G226300g PE=4 SV=1)

HSP 1 Score: 798.5 bits (2061), Expect = 1.1e-227
Identity = 471/659 (71.47%), Postives = 540/659 (81.94%), Query Frame = 0


Query: 1   MADLENLLLEAAGRTKASGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDERGYASRKPS 60
           MADLENLLLEAAGRT  SGRNRHS PPSRR+ +G+YSD GSDSRDD SDDE  YASRKPS
Sbjct: 1   MADLENLLLEAAGRTGTSGRNRHSLPPSRRRHDGAYSDGGSDSRDDXSDDELNYASRKPS 60

Query: 61  GSQVPLKKRLDPNERDDDVGSPEEGXXXXXXXXXXXXXXXXXXXGDDLYKDDDDRRKLAG 120
           GSQVPLKKRLDP+ERDDD+GS    XXXXXXXXXXXXXXXXXXX  DLYKD+DDRRKL+ 
Sbjct: 61  GSQVPLKKRLDPSERDDDLGSQXXXXXXXXXXXXXXXXXXXXXXXXDLYKDEDDRRKLSE 120

Query: 121 MSELQREMILSDRASKKNDKHLYESLRSKMDKGKAAPSRKENPPPPSSRIRSSARSADRA 180
           M+ELQREMILSDRA+KK+DK+L   + SK +KGK +  RK++PP  SSR+R+SARSADR 
Sbjct: 121 MTELQREMILSDRATKKDDKNLLGKIASKREKGKVSVPRKQSPPMSSSRMRASARSADR- 180

Query: 181 AAKDDALNELRAKRLKQQDPEAHRKLRDTSRGNANNRRFSPTKRKPFTAPSLSSXXXXXX 240
           +AK+DALNELRAKRLKQQDPEAHRKLR+ SR NA  R FSP KRKPFT      XXXXXX
Sbjct: 181 SAKNDALNELRAKRLKQQDPEAHRKLREASR-NAGPRHFSPPKRKPFTXXXXXXXXXXXX 240

Query: 241 XXXFQSDDEGSTGDGGMIDSDDERTMPGSNGPTFDDIKEITIRRSKLAKWLMEPFFEELI 300
           XXX                    R + GS GP+F DIKEITIRRSKLAKW MEPFFEELI
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXXRALTGSEGPSFQDIKEITIRRSKLAKWFMEPFFEELI 300

Query: 301 VGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNESSAARWQ 360
           VGCFVRVGIGRS++GPIYRLC+V+NVDA+EPDRQYKLENK T+KYLNV+WGNESSAARWQ
Sbjct: 301 VGCFVRVGIGRSKTGPIYRLCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNESSAARWQ 360

Query: 361 MAMVSDSGPLEDEYKQWVKEVERTGGRMLSKQDILEKKEAIQKANNFVYSAATVKQMLQE 420
           MAMVSDS PLE+E+KQWVKEV+R+GGRM +KQD+LEKK+AIQKA  FVYSAATVKQMLQE
Sbjct: 361 MAMVSDSAPLEEEFKQWVKEVDRSGGRMPTKQDVLEKKQAIQKAITFVYSAATVKQMLQE 420

Query: 421 KKSASSRPLNIAAEKDRLRNQMDVALSKNNEAEVERIKAKLRQLDASRRSQMKDAKAIRL 480
           KKSAS+RPLN+AAEKDRLR ++++A SK++EAEV+RIKA+L++L+ASR ++ KDAKA++L
Sbjct: 421 KKSASTRPLNVAAEKDRLRRELEIAQSKHDEAEVDRIKARLQELEASRHAKQKDAKALKL 480

Query: 481 SEMNRKNRVENFKNASELRPTK-DLKAGEAGYDPFSRRWTRSRNYYVSNAGQVDGAAEAA 540
           +EMNRKNR ENFKNASEL+P    LKAGEAGYDPFSRRWTRSRNYY    G+   A   +
Sbjct: 481 AEMNRKNRFENFKNASELKPVNTGLKAGEAGYDPFSRRWTRSRNYY---TGEKAAAGNNS 540

Query: 541 GNSDNITPASETTGTXXXXXXXXXXXXXXXXXAG-AGKLVDTNAPVDGGTESNLLHNFEL 600
            N     P + +TG                  A  AGKLVDT+APVD GTESN+LHNFEL
Sbjct: 541 VNGIVAGPGTNSTGAPVTAEAGLVATAAALEAAADAGKLVDTSAPVDQGTESNMLHNFEL 600

Query: 601 PISLAVLQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL 658
           PISLA+LQK+GGA GAQAGF+ARKQRIE+TVG +V ENDGRRH+LTL+VSDYKRRRGLL
Sbjct: 601 PISLALLQKYGGAQGAQAGFMARKQRIESTVGFRVLENDGRRHSLTLSVSDYKRRRGLL 654

[Close]

BLAST of Carg05778 vs. TrEMBL
Match: tr|A0A251PVJ9|A0A251PVJ9_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G050300 PE=4 SV=1)

HSP 1 Score: 795.0 bits (2052), Expect = 1.2e-226
Identity = 458/661 (69.29%), Postives = 509/661 (77.00%), Query Frame = 0


Query: 1   MADLENLLLEAAGRTKASGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDERGYASRKPS 60
           MADLENLLLEAAGRT +                                  RGYASRKPS
Sbjct: 1   MADLENLLLEAAGRTSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRGYASRKPS 60

Query: 61  GSQVPLKKRLDPNERDDDVGSPEEGXXXXXXXXXXXXXXXXXXXGDDLYKDDDDRRKLAG 120
           G+QVPLKKRLDP E DD+ GS EEG                   G DLYKD+DDRRKLA 
Sbjct: 61  GTQVPLKKRLDPTEMDDEQGSQEEG-DYNDSGSDRGGDSNESDVGSDLYKDEDDRRKLAE 120

Query: 121 MSELQREMILSDRASKKNDKHLYESLRSKMDKGKAAPSRKENPPPPSSRIRSSARSADRA 180
           MSELQRE+ILSDRA KK+DK L E  R K DKGK   SRKE PP PSSR+RSSARSADRA
Sbjct: 121 MSELQRELILSDRAQKKDDKSLKEKFRPKWDKGKTTHSRKETPPLPSSRVRSSARSADRA 180

Query: 181 AAKDDALNELRAKRLKQQDPEAHRKLRDTSRGNANNRRFSPTKRKPFTAPSLSSXXXXXX 240
           AAKDDALNELRAKRLKQQDPEAHRKLRD SRG++ +R FS   RK FTA   S XXXXXX
Sbjct: 181 AAKDDALNELRAKRLKQQDPEAHRKLRDASRGSSGSRSFSHMTRKSFTAVGRSXXXXXXX 240

Query: 241 XXXFQSDDEGSTGDGGMIDSDDERTMPGSNGPTFDDIKEITIRRSKLAKWLMEPFFEELI 300
           XXX      GSTG+  M+DSDDER    S G TFDDIKEITIRRSKLAKWLMEPFFEELI
Sbjct: 241 XXXXXXXXXGSTGEDPMMDSDDER----SEGLTFDDIKEITIRRSKLAKWLMEPFFEELI 300

Query: 301 VGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNESSAARWQ 360
           VGCFVRVGIGRS+SGPIYRLC+VRNVDA++PDR+YKLENK THKYLNV+WGNE+SAARWQ
Sbjct: 301 VGCFVRVGIGRSKSGPIYRLCMVRNVDASDPDRKYKLENKTTHKYLNVVWGNENSAARWQ 360

Query: 361 MAMVSDSGPLEDEYKQWVKEVERTGGRMLSKQDILEKKEAIQKANNFVYSAATVKQMLQE 420
           MAM+SDS PLE+E+KQWV+EVER+GGR+ SKQD+LEKKEAI+K N FVYSAATVKQM++E
Sbjct: 361 MAMISDSAPLEEEFKQWVREVERSGGRLPSKQDVLEKKEAIKKINTFVYSAATVKQMIEE 420

Query: 421 KKSASSRPLNIAAEKDRLRNQMDVALSKNNEAEVERIKAKLRQLDASRRSQMKDAKAIRL 480
           KKSASSRPLNIA EKDRLR +++VA SK+++AEVERIK +L+QL+A R+SQ KD+KA+RL
Sbjct: 421 KKSASSRPLNIALEKDRLRRELEVAQSKHDDAEVERIKTRLQQLEARRQSQGKDSKAVRL 480

Query: 481 SEMNRKNRVENFKNASELRPTK-DLKAGEAGYDPFSRRWTRSRNYYVSNAGQVDGAAEAA 540
           +EMNRKNRVENFKNASEL+P K  LKAGEAGYDPFSRRWTRSRNYYVS  G+  G AEA 
Sbjct: 481 AEMNRKNRVENFKNASELKPVKTGLKAGEAGYDPFSRRWTRSRNYYVSKPGEQKGEAEAI 540

Query: 541 GNSDNITPASETTGT---XXXXXXXXXXXXXXXXXAGAGKLVDTNAPVDGGTESNLLHNF 600
            ++D      E+ GT                    AGAGKL+DT+APVD GTESNL+HNF
Sbjct: 541 VDADGALADIESNGTAVVGAVRAGMAATAAALEAAAGAGKLIDTSAPVDFGTESNLMHNF 600

Query: 601 ELPISLAVLQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYKRRRGL 658
           ELPISLA LQKFGG  GAQ GFLARKQRIEATVG +VPENDGRRHALTLTVSDYKRR GL
Sbjct: 601 ELPISLATLQKFGGPQGAQEGFLARKQRIEATVGCRVPENDGRRHALTLTVSDYKRRMGL 656

The following BLAST results are available for this feature:

BLAST of Carg05778 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023552862.1	0.0e+00	98.93	protein RTF1 homolog [Cucurbita pepo subsp. pepo]	[more]
XP_022929443.1	0.0e+00	99.09	protein RTF1 homolog [Cucurbita moschata] >XP_022929444.1 protein RTF1 homolog [...	[more]
XP_022984183.1	0.0e+00	98.17	protein RTF1 homolog [Cucurbita maxima] >XP_022984184.1 protein RTF1 homolog [Cu...	[more]
XP_004149150.1	1.8e-293	87.42	PREDICTED: RNA polymerase-associated protein RTF1 homolog [Cucumis sativus] >XP_...	[more]
XP_022136687.1	4.3e-279	84.39	protein RTF1 homolog [Momordica charantia]	[more]

BLAST of Carg05778 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G61040.1	2.2e-208	69.04	plus-3 domain-containing protein	[more]

BLAST of Carg05778 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9C950\|VIP5_ARATH	3.9e-207	69.04	Protein RTF1 homolog OS=Arabidopsis thaliana OX=3702 GN=VIP5 PE=1 SV=1	[more]
sp\|A2AQ19\|RTF1_MOUSE	3.8e-21	26.67	RNA polymerase-associated protein RTF1 homolog OS=Mus musculus OX=10090 GN=Rtf1 ...	[more]
sp\|Q92541\|RTF1_HUMAN	6.5e-21	26.67	RNA polymerase-associated protein RTF1 homolog OS=Homo sapiens OX=9606 GN=RTF1 P...	[more]
sp\|Q5RAD5\|RTF1_PONAB	1.0e-18	28.89	RNA polymerase-associated protein RTF1 homolog (Fragment) OS=Pongo abelii OX=960...	[more]
sp\|Q9W261\|RTF1_DROME	4.8e-16	26.64	RNA polymerase-associated protein Rtf1 OS=Drosophila melanogaster OX=7227 GN=Rtf...	[more]

BLAST of Carg05778 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KXW1\|A0A0A0KXW1_CUCSA	1.2e-293	87.42	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G038650 PE=4 SV=1	[more]
tr\|A0A1S3BXS8\|A0A1S3BXS8_CUCME	1.9e-275	83.64	protein RTF1 homolog OS=Cucumis melo OX=3656 GN=LOC103494388 PE=4 SV=1	[more]
tr\|K7L2P2\|K7L2P2_SOYBN	2.4e-230	69.95	Uncharacterized protein OS=Glycine max OX=3847 GN=100818650 PE=4 SV=1	[more]
tr\|V7CPL2\|V7CPL2_PHAVU	1.1e-227	71.47	Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_002G226300g PE=4 ...	[more]
tr\|A0A251PVJ9\|A0A251PVJ9_PRUPE	1.2e-226	69.29	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G050300 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016593	Cdc73/Paf1 complex

Vocabulary: **Biological Process**
Term	Definition
GO:0006368	transcription elongation from RNA polymerase II promoter
GO:0016570	histone modification

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR031102	Rtf1
IPR036128	Plus3-like_sf
IPR004343	Plus-3_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016570	histone modification
biological_process	GO:0006368	transcription elongation from RNA polymerase II promoter
cellular_component	GO:0016593	Cdc73/Paf1 complex
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg05778-RA	Carg05778-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 435..467
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 542..557
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 536..557
None	No IPR available	PANTHER	PTHR13115:SF8	RNA POLYMERASE-ASSOCIATED PROTEIN RTF1 HOMOLOG	coord: 1..656
IPR004343	Plus-3 domain	SMART	SM00719	rtf1	coord: 271..383 e-value: 2.4E-44 score: 163.3
IPR004343	Plus-3 domain	PFAM	PF03126	Plus-3	coord: 276..381 e-value: 6.7E-31 score: 106.9
IPR004343	Plus-3 domain	PROSITE	PS51360	PLUS3	coord: 271..406 score: 36.706
IPR036128	Plus3-like superfamily	GENE3D	G3DSA:2.170.260.30		coord: 272..404 e-value: 1.3E-38 score: 133.7
IPR036128	Plus3-like superfamily	SUPERFAMILY	SSF159042	Plus3-like	coord: 273..404
IPR031102	RNA polymerase-associated protein Rtf1	PANTHER	PTHR13115	UNCHARACTERIZED	coord: 1..656

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg05778	Cla014512	Watermelon (97103) v1	carwmB1018
Carg05778	Csa4G038650	Cucumber (Chinese Long) v2	carcuB1033
Carg05778	MELO3C017564	Melon (DHL92) v3.5.1	carmeB0992
Carg05778	CSPI04G04920	Wild cucumber (PI 183967)	carcpiB1057
Carg05778	Cucsa.201430	Cucumber (Gy14) v1	carcgyB1134
Carg05778	CmaCh04G007870	Cucurbita maxima (Rimu)	carcmaB1414
Carg05778	CmaCh16G006620	Cucurbita maxima (Rimu)	carcmaB1409
Carg05778	CmoCh04G008430	Cucurbita moschata (Rifu)	carcmoB1371
Carg05778	CmoCh16G007190	Cucurbita moschata (Rifu)	carcmoB1366
Carg05778	Lsi07G001960	Bottle gourd (USVL1VR-Ls)	carlsiB935
Carg05778	Cp4.1LG14g01450	Cucurbita pepo (Zucchini)	carcpeB1414
Carg05778	Cp4.1LG01g09470	Cucurbita pepo (Zucchini)	carcpeB1417
Carg05778	MELO3C017564.2	Melon (DHL92) v3.6.1	carmedB1004
Carg05778	CsaV3_4G005020	Cucumber (Chinese Long) v3	carcucB1063
Carg05778	Bhi01G001906	Wax gourd	carwgoB1193

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg05778	Carg14183	Silver-seed gourd	carcarB646

The following block(s) are covering this gene:


Gene	Organism	Block
Carg05778	Cucumber (Gy14) v2	carcgybB1005
Carg05778	Cucurbita maxima (Rimu)	carcmaB1415
Carg05778	Cucurbita pepo (Zucchini)	carcpeB1413
Carg05778	Cucurbita pepo (Zucchini)	carcpeB1419
Carg05778	Watermelon (Charleston Gray)	carwcgB0999
Carg05778	Watermelon (97103) v1	carwmB1022
Carg05778	Watermelon (97103) v2	carwmbB1073
Carg05778	Watermelon (97103) v2	carwmbB1084