CsaV3_3G018740 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_3G018740
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr3 : 14449561 .. 14451492 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAGAAAGAAGTACTTTTTGGTCTTCTTTCTCTTATAAACCCATTCTCTTAACCTGCCTATTTAATTAAAACTCTAATTTCTTCCTTAAATTCTTTTAACATGGGTGGTTGTGCTAGCAAGCCAAAGACTAGCATTGAGAAAGAAGTCACCCCTTTGCCTGTTGAAGAGTCAAAGAAGGAGACGACCATCATGGCCGTACTCAAGGAAGCGAAGCACGAAAATGGATCAGAAAAAGAAAGCGATGATCAAGTTAAGGAGAAGAAGATTGATGTGAGAGAAAAGAAGGTTGAGGAGGATATCCAACCCCTCTCTCTTGGATGTTTGCTCATTCAGGTTCCTTTCTTAAAACTTAACTTCCTATTTCATTTCGCTCTTCAAACGAGCTTGTCTATACATAAAATCCATTCTTCTTACCACCTAATCATTTTCTCATTCACTTCTTCTTTTTTAAATGAAAACTTTCATTTTTCTTAATCAGATTATTTACTCTTTTTTTTTTTTTTTCTAAATTTTAGGACAAAAAAGAAGTAGAAATTCCAACTGAAACCAAAAAAGAAGAACCCAAAGAAGTAAAGGTTGAGGCAGCGAAACCAAAAGAAGCAGCACCGAAAGCTGCCATCGTTGCACCGACGACGGCTGAACCCCAAAAACTCACCGCCATTGTAGATGCAGCTGAACCTCAAAAAGCAACCGCCGTTGTGCAAGCAGCCGAACCCCAAAAACCCACCGCCGTTGTAGCAGCAGCTGAACCCCAAAAAGTAACCGCCGTTGTAGCAGCAGCCGAACCACAAAAACCCACCCCCGTTGTAGCAGCAGCCGAACCACAAAAACCCACCCCCGTTGTAGCAGCAGCCGAACCACAAAATGCCACCCCCGCTGTAGCAGCAGCCGGACCACAAAAAGCCACTCCCTTTGTAGCAGCAGCCGAACCACAAAAAGCCACCCCCGTTGTAGCAGCAGCCGAACCACAAAAAGCCACCCCCGTTGTAGCAGCAGCAGCCGAACCACAAAAAGCCACCCCCGTTGTAGCAGCAGCTGAACCACAAAAAGCCACCCCCGTTGTAGCAGCAGCTGAACCACAAAAAGCCACCCCCGTTGTAGCAGCAGCTGAACCACAAAAAGCCACTGCCGTTGTAGCAGCAGCTGAACCCCAAAAAGCCACCGCCGTTGTAGCAGCAGCTGAACCCCAAAAAGCCACCGCCGTTGTAGCAGCAGCTGAACCCCAAAAAGCGACCGCCGTTGTAGCAGCAGCTGAACCCCAAAAAGCGACCGCCGTTGTAACAGCAGCTGAACCCCAAAAAGCGACCGCCGTTGTAGCAGCAGCTGAACCCCAAAAAGCTACCGCCGTTGTAGCAGCAGCTGAACCCCAAAAAGCCACCCCCGTTGTAGCAGCAGCTGAACCACAAAAAGCCACCCCCGTTGTAGAAGCAGCAGAACCCAAAAAAGCCACCGAAGGGGAGAAAACCGGCGTGGAGGTAGAGTCATTGGTGGAGAAGATAGCAAAGATTGAGGCAGCATCTGTGGCGGTGACAACAAAAACGCAATGATTGTTAAATTGAGGGAAACTAGAGAGAGGCAGAAGATTTAAAGTAAAAGAACAAAATGGATTTCGTTGTATTTGGAACAAAATATTTAATTTCTTTACCAATATTCATTAAGAAAATTGCTCATAATTTGGTTCTTCTTTCATTGAAAATGTATAATAGAATTTGAAAAATAATGAAAAAAAAAAAAAATTCTTGTTTGAGTTTGTTCCATTTACCTGACCTTTCATTATCAAATTTCTTTCAAAATTGGTTAATGTTTTGTTGGTCGTTTTATTGGAAGGTTTTGAGTTTGCTAAAAAGAATTGTATTCGAAAAGAGATAGTAATGTGGTTGATTCAATTCCAATTTTTTAATCCTACAACATCATATTCATGTATGTTCCAC

mRNA sequence

ATGGGTGGTTGTGCTAGCAAGCCAAAGACTAGCATTGAGAAAGAAGTCACCCCTTTGCCTGTTGAAGAGTCAAAGAAGGAGACGACCATCATGGCCGTACTCAAGGAAGCGAAGCACGAAAATGGATCAGAAAAAGAAAGCGATGATCAAGTTAAGGAGAAGAAGATTGATGTGAGAGAAAAGAAGGTTGAGGAGGATATCCAACCCCTCTCTCTTGGATGTTTGCTCATTCAGGACAAAAAAGAAGTAGAAATTCCAACTGAAACCAAAAAAGAAGAACCCAAAGAAGTAAAGGTTGAGGCAGCGAAACCAAAAGAAGCAGCACCGAAAGCTGCCATCGTTGCACCGACGACGGCTGAACCCCAAAAACTCACCGCCATTGTAGATGCAGCTGAACCTCAAAAAGCAACCGCCGTTGTGCAAGCAGCCGAACCCCAAAAACCCACCGCCGTTGTAGCAGCAGCTGAACCCCAAAAAGTAACCGCCGTTGTAGCAGCAGCCGAACCACAAAAACCCACCCCCGTTGTAGCAGCAGCCGAACCACAAAAACCCACCCCCGTTGTAGCAGCAGCCGAACCACAAAATGCCACCCCCGCTGTAGCAGCAGCCGGACCACAAAAAGCCACTCCCTTTGTAGCAGCAGCCGAACCACAAAAAGCCACCCCCGTTGTAGCAGCAGCCGAACCACAAAAAGCCACCCCCGTTGTAGCAGCAGCAGCCGAACCACAAAAAGCCACCCCCGTTGTAGCAGCAGCTGAACCACAAAAAGCCACCCCCGTTGTAGCAGCAGCTGAACCACAAAAAGCCACCCCCGTTGTAGCAGCAGCTGAACCACAAAAAGCCACTGCCGTTGTAGCAGCAGCTGAACCCCAAAAAGCCACCGCCGTTGTAGCAGCAGCTGAACCCCAAAAAGCCACCGCCGTTGTAGCAGCAGCTGAACCCCAAAAAGCGACCGCCGTTGTAGCAGCAGCTGAACCCCAAAAAGCGACCGCCGTTGTAACAGCAGCTGAACCCCAAAAAGCGACCGCCGTTGTAGCAGCAGCTGAACCCCAAAAAGCTACCGCCGTTGTAGCAGCAGCTGAACCCCAAAAAGCCACCCCCGTTGTAGCAGCAGCTGAACCACAAAAAGCCACCCCCGTTGTAGAAGCAGCAGAACCCAAAAAAGCCACCGAAGGGGAGAAAACCGGCGTGGAGGTAGAGTCATTGGTGGAGAAGATAGCAAAGATTGAGGCAGCATCTGTGGCGGTGACAACAAAAACGCAATGA

Coding sequence (CDS)

ATGGGTGGTTGTGCTAGCAAGCCAAAGACTAGCATTGAGAAAGAAGTCACCCCTTTGCCTGTTGAAGAGTCAAAGAAGGAGACGACCATCATGGCCGTACTCAAGGAAGCGAAGCACGAAAATGGATCAGAAAAAGAAAGCGATGATCAAGTTAAGGAGAAGAAGATTGATGTGAGAGAAAAGAAGGTTGAGGAGGATATCCAACCCCTCTCTCTTGGATGTTTGCTCATTCAGGACAAAAAAGAAGTAGAAATTCCAACTGAAACCAAAAAAGAAGAACCCAAAGAAGTAAAGGTTGAGGCAGCGAAACCAAAAGAAGCAGCACCGAAAGCTGCCATCGTTGCACCGACGACGGCTGAACCCCAAAAACTCACCGCCATTGTAGATGCAGCTGAACCTCAAAAAGCAACCGCCGTTGTGCAAGCAGCCGAACCCCAAAAACCCACCGCCGTTGTAGCAGCAGCTGAACCCCAAAAAGTAACCGCCGTTGTAGCAGCAGCCGAACCACAAAAACCCACCCCCGTTGTAGCAGCAGCCGAACCACAAAAACCCACCCCCGTTGTAGCAGCAGCCGAACCACAAAATGCCACCCCCGCTGTAGCAGCAGCCGGACCACAAAAAGCCACTCCCTTTGTAGCAGCAGCCGAACCACAAAAAGCCACCCCCGTTGTAGCAGCAGCCGAACCACAAAAAGCCACCCCCGTTGTAGCAGCAGCAGCCGAACCACAAAAAGCCACCCCCGTTGTAGCAGCAGCTGAACCACAAAAAGCCACCCCCGTTGTAGCAGCAGCTGAACCACAAAAAGCCACCCCCGTTGTAGCAGCAGCTGAACCACAAAAAGCCACTGCCGTTGTAGCAGCAGCTGAACCCCAAAAAGCCACCGCCGTTGTAGCAGCAGCTGAACCCCAAAAAGCCACCGCCGTTGTAGCAGCAGCTGAACCCCAAAAAGCGACCGCCGTTGTAGCAGCAGCTGAACCCCAAAAAGCGACCGCCGTTGTAACAGCAGCTGAACCCCAAAAAGCGACCGCCGTTGTAGCAGCAGCTGAACCCCAAAAAGCTACCGCCGTTGTAGCAGCAGCTGAACCCCAAAAAGCCACCCCCGTTGTAGCAGCAGCTGAACCACAAAAAGCCACCCCCGTTGTAGAAGCAGCAGAACCCAAAAAAGCCACCGAAGGGGAGAAAACCGGCGTGGAGGTAGAGTCATTGGTGGAGAAGATAGCAAAGATTGAGGCAGCATCTGTGGCGGTGACAACAAAAACGCAATGA

Protein sequence

MGGCASKPKTSIEKEVTPLPVEESKKETTIMAVLKEAKHENGSEKESDDQVKEKKIDVREKKVEEDIQPLSLGCLLIQDKKEVEIPTETKKEEPKEVKVEAAKPKEAAPKAAIVAPTTAEPQKLTAIVDAAEPQKATAVVQAAEPQKPTAVVAAAEPQKVTAVVAAAEPQKPTPVVAAAEPQKPTPVVAAAEPQNATPAVAAAGPQKATPFVAAAEPQKATPVVAAAEPQKATPVVAAAAEPQKATPVVAAAEPQKATPVVAAAEPQKATPVVAAAEPQKATAVVAAAEPQKATAVVAAAEPQKATAVVAAAEPQKATAVVAAAEPQKATAVVTAAEPQKATAVVAAAEPQKATAVVAAAEPQKATPVVAAAEPQKATPVVEAAEPKKATEGEKTGVEVESLVEKIAKIEAASVAVTTKTQ

Homology

[Close]

BLAST of CsaV3_3G018740 vs. NCBI nr
Match: KGN57553.1 (hypothetical protein Csa_3G210480 [Cucumis sativus])

HSP 1 Score: 151.8 bits (382), Expect = 5.4e-33
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MGGCASKPKTSIEKEVTPLPVEESKKETTIMAVLKEAKHENGSEKESDDQVXXXXXXXXX 60
          MGGCASKPKTSIEKEVTPLPVEESKKETTIMAVLKEAKHENGSEKESDDQVXXXXXXXXX
Sbjct: 1  MGGCASKPKTSIEKEVTPLPVEESKKETTIMAVLKEAKHENGSEKESDDQVXXXXXXXXX 60

Query: 61 XXXEEDIQPLSLGCLLIQDKKEVEIPTETKKEE 94
          XXXEEDIQPLSLGCLLIQDKKEVEIPTETKKEE
Sbjct: 61 XXXEEDIQPLSLGCLLIQDKKEVEIPTETKKEE 93

HSP 2 Score: 55.5 bits (132), Expect = 5.2e-04
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0


Query: 392 GEKTGVEVESLVEKIAKIEAASVAVTTKTQ 422
           GEKTGVEVESLVEKIAKIEAASVAVTTKTQ
Sbjct: 233 GEKTGVEVESLVEKIAKIEAASVAVTTKTQ 262

[Close]

BLAST of CsaV3_3G018740 vs. NCBI nr
Match: XP_011651254.1 (PREDICTED: histone H1-II-like [Cucumis sativus])

HSP 1 Score: 151.8 bits (382), Expect = 5.4e-33
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MGGCASKPKTSIEKEVTPLPVEESKKETTIMAVLKEAKHENGSEKESDDQVXXXXXXXXX 60
          MGGCASKPKTSIEKEVTPLPVEESKKETTIMAVLKEAKHENGSEKESDDQVXXXXXXXXX
Sbjct: 1  MGGCASKPKTSIEKEVTPLPVEESKKETTIMAVLKEAKHENGSEKESDDQVXXXXXXXXX 60

Query: 61 XXXEEDIQPLSLGCLLIQDKKEVEIPTETKKEE 94
          XXXEEDIQPLSLGCLLIQDKKEVEIPTETKKEE
Sbjct: 61 XXXEEDIQPLSLGCLLIQDKKEVEIPTETKKEE 93

[Close]

BLAST of CsaV3_3G018740 vs. NCBI nr
Match: XP_016901902.1 (PREDICTED: probable serine/threonine-protein kinase kinX [Cucumis melo])

HSP 1 Score: 114.4 bits (285), Expect = 9.5e-22
Identity = 80/92 (86.96%), Postives = 80/92 (86.96%), Query Frame = 0


Query: 1  MGGCASKPKTSIEKEVTPLPVEESKKETTIMAVLKEAKHENGSEKESDDQVXXXXXXXXX 60
          MGGCASKPKT IEKEVTPLPVEESKKE     V KEAK ENG EKESDD  XXXXXXXXX
Sbjct: 1  MGGCASKPKTGIEKEVTPLPVEESKKE----VVPKEAKVENG-EKESDDXXXXXXXXXXX 60

Query: 61 XXXEEDIQPLSLGCLLIQDKKEVEIPTETKKE 93
          XXXEED QPLSLGCLLIQDKKEVEIPTETKKE
Sbjct: 61 XXXEEDTQPLSLGCLLIQDKKEVEIPTETKKE 87

[Close]

BLAST of CsaV3_3G018740 vs. TrEMBL
Match: tr|A0A0A0L739|A0A0A0L739_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G210480 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 3.5e-33
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MGGCASKPKTSIEKEVTPLPVEESKKETTIMAVLKEAKHENGSEKESDDQVXXXXXXXXX 60
          MGGCASKPKTSIEKEVTPLPVEESKKETTIMAVLKEAKHENGSEKESDDQVXXXXXXXXX
Sbjct: 1  MGGCASKPKTSIEKEVTPLPVEESKKETTIMAVLKEAKHENGSEKESDDQVXXXXXXXXX 60

Query: 61 XXXEEDIQPLSLGCLLIQDKKEVEIPTETKKEE 94
          XXXEEDIQPLSLGCLLIQDKKEVEIPTETKKEE
Sbjct: 61 XXXEEDIQPLSLGCLLIQDKKEVEIPTETKKEE 93

HSP 2 Score: 55.5 bits (132), Expect = 3.5e-04
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0


Query: 392 GEKTGVEVESLVEKIAKIEAASVAVTTKTQ 422
           GEKTGVEVESLVEKIAKIEAASVAVTTKTQ
Sbjct: 233 GEKTGVEVESLVEKIAKIEAASVAVTTKTQ 262

[Close]

BLAST of CsaV3_3G018740 vs. TrEMBL
Match: tr|A0A1S4E0Y5|A0A1S4E0Y5_CUCME (probable serine/threonine-protein kinase kinX OS=Cucumis melo OX=3656 GN=LOC103496142 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 6.3e-22
Identity = 80/92 (86.96%), Postives = 80/92 (86.96%), Query Frame = 0


Query: 1  MGGCASKPKTSIEKEVTPLPVEESKKETTIMAVLKEAKHENGSEKESDDQVXXXXXXXXX 60
          MGGCASKPKT IEKEVTPLPVEESKKE     V KEAK ENG EKESDD  XXXXXXXXX
Sbjct: 1  MGGCASKPKTGIEKEVTPLPVEESKKE----VVPKEAKVENG-EKESDDXXXXXXXXXXX 60

Query: 61 XXXEEDIQPLSLGCLLIQDKKEVEIPTETKKE 93
          XXXEED QPLSLGCLLIQDKKEVEIPTETKKE
Sbjct: 61 XXXEEDTQPLSLGCLLIQDKKEVEIPTETKKE 87

The following BLAST results are available for this feature:

BLAST of CsaV3_3G018740 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57553.1	5.4e-33	100.00	hypothetical protein Csa_3G210480 [Cucumis sativus]	[more]
XP_011651254.1	5.4e-33	100.00	PREDICTED: histone H1-II-like [Cucumis sativus]	[more]
XP_016901902.1	9.5e-22	86.96	PREDICTED: probable serine/threonine-protein kinase kinX [Cucumis melo]	[more]

BLAST of CsaV3_3G018740 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G018740 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G018740 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L739\|A0A0A0L739_CUCSA	3.5e-33	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G210480 PE=4 SV=1	[more]
tr\|A0A1S4E0Y5\|A0A1S4E0Y5_CUCME	6.3e-22	86.96	probable serine/threonine-protein kinase kinX OS=Cucumis melo OX=3656 GN=LOC1034...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0016310	phosphorylation
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0016301	kinase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G018740.1	CsaV3_3G018740.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 367..397
None	No IPR available	PANTHER	PTHR31002:SF20	CELL WALL PROTEIN DAN4	coord: 118..230
None	No IPR available	PANTHER	PTHR31002	SERIPAUPERIN	coord: 236..391
None	No IPR available	PANTHER	PTHR31002:SF20	CELL WALL PROTEIN DAN4	coord: 236..391
None	No IPR available	PANTHER	PTHR31002	SERIPAUPERIN	coord: 118..230

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_3G018740	CSPI03G18690	Wild cucumber (PI 183967)	cpicucB144
CsaV3_3G018740	CmaCh16G003660	Cucurbita maxima (Rimu)	cmacucB0373
CsaV3_3G018740	CmoCh16G003910	Cucurbita moschata (Rifu)	cmocucB0370
CsaV3_3G018740	CsGy3G018530	Cucumber (Gy14) v2	cgybcucB117
CsaV3_3G018740	Carg11294	Silver-seed gourd	carcucB0687
CsaV3_3G018740	Cla013053	Watermelon (97103) v1	cucwmB252
CsaV3_3G018740	MELO3C019496	Melon (DHL92) v3.5.1	cucmeB247
CsaV3_3G018740	ClCG05G009850	Watermelon (Charleston Gray)	cucwcgB238
CsaV3_3G018740	Lsi05G001990	Bottle gourd (USVL1VR-Ls)	cuclsiB230
CsaV3_3G018740	Cla97C05G092240	Watermelon (97103) v2	cucwmbB217
CsaV3_3G018740	Bhi01G001241	Wax gourd	cucwgoB287

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_3G018740	Silver-seed gourd	carcucB0403
CsaV3_3G018740	Cucurbita maxima (Rimu)	cmacucB0829
CsaV3_3G018740	Cucurbita moschata (Rifu)	cmocucB0814
CsaV3_3G018740	Cucurbita pepo (Zucchini)	cpecucB0247
CsaV3_3G018740	Cucurbita pepo (Zucchini)	cpecucB0484
CsaV3_3G018740	Melon (DHL92) v3.6.1	cucmedB246