Lsi05G001990 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G001990
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	S-antigen protein
Location	chr05 : 2764141 .. 2765549 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCAATTTGCTCTCTTTTCCTTTCTTTCTCTTCTCCAAAACCCTTCTGATTCCATAGAATAAGAAGAGAAAGAAGTACTTTGGTCTTCTTTCTCTCAAACCCATTCTCTCTTTCTTTCAATTCTAACATCTTTTAATTAAAACTCTCTCTCTCTCTCAAATTTTTAACATGGGTGGTTGTGCTAGCAAGCCAAAGACAAACCTTGAAAAGGAAGTCACCCCTTTGCCCATCTCCGTCTTTGAAGAGAAGGAGACGACGATGACGGTCCCGACTATCGAGGAGAAGGAAGTTAAGATTGGAAATGAAAAAAAGAGCGATGATCAAGTTGATGAGAAGAAGGTTTACGATGGAGAAAAGAAGGTTGAGGAGGATAATAGCCAACCGCTCTCTCTTGGATGTTTGCTCATTCAGGTCTAAATTTTAAATTATAGCTTGTCATGGGACTAAAATTAACTATGCATTTAATTCATTTTAAAATAATATATATATATATATTAATGAAACTATTTTTTATTTTTTATTTTAGGACAAAAAAGAGGTAGAAATTCCAACAGAGACCAAAAAAGAAGAGCCCAAAGAACAAGTCAAGGTTGAAGCAGCGAAACCAATAGAAGCAGCGCCAGCAGCTGCCGTTGTTACACCGACCACGGCGGAACCCCAAAAACCCATCGTCGAGGCAGCAGTGGCCGAACCCCAAAAAGCCACCGTCGTCGAGGTAGAGCCCAAGAAAGCCACCGTCGAGGTAGCTGCTGCTGAACCCCAAAAACCCATTGTCCTACCGGTTGCTGAACCCAATAAAGCCACCGTCGAGGCGGCGATAGAGCCCCAAAAAGCCACCGTCGTCGAGGTAGAGCCCAAGAAAGCCACCGTCGAGGTAGCTGCTGCTGAGCCCCAAAAACCCATTGTCCTACCGGTTGCTGAACCCAATAAAGCCACCGTCGAGGCGGCGATAGAGCCCAAACAAGCCACCGTCGAGGCAGCGGTAGAGCCCCAAAAAGCCACCGTCGTCGAGGTAGAGCCCAAGAAAGCCACCGTCGAGGTAGCTGCTGCTGAGCCCCAAAAACCCATTGTCCTACCGGTTGCTGAACCCAATAAAGCCACCGTCGAGGCGGCGATAGAGCCCAAAAAAGCCACCGTCGAGGCAGCGGTAGAGCCCCAAAAAGCCACCGTCGTCGAGGTAGAGCCCAAGAAAGCCACCGTCGAGGTAGCTGCTGCTGAGCCCCAAAAACCCATTGTCCTACCGGTTGCTGAACCCAATAAAGCCACCGTCGAGGCGGCGATAGAGCCCAAACAAGCCACCGTCGAGGCAGCGGGAGAGCCCAAAAAAGCCACCGAAGTGGAGAAAACCGCCATGGAGGCACCGTCATCGGCAGTGGTAGTGGCGGCAGTGACAACAGAGAAGCAATGA

mRNA sequence

CTTCAATTTGCTCTCTTTTCCTTTCTTTCTCTTCTCCAAAACCCTTCTGATTCCATAGAATAAGAAGAGAAAGAAGTACTTTGGTCTTCTTTCTCTCAAACCCATTCTCTCTTTCTTTCAATTCTAACATCTTTTAATTAAAACTCTCTCTCTCTCTCAAATTTTTAACATGGGTGGTTGTGCTAGCAAGCCAAAGACAAACCTTGAAAAGGAAGTCACCCCTTTGCCCATCTCCGTCTTTGAAGAGAAGGAGACGACGATGACGGTCCCGACTATCGAGGAGAAGGAAGTTAAGATTGGAAATGAAAAAAAGAGCGATGATCAAGTTGATGAGAAGAAGGTTTACGATGGAGAAAAGAAGGTTGAGGAGGATAATAGCCAACCGCTCTCTCTTGGATGTTTGCTCATTCAGGACAAAAAAGAGGTAGAAATTCCAACAGAGACCAAAAAAGAAGAGCCCAAAGAACAAGTCAAGGTTGAAGCAGCGAAACCAATAGAAGCAGCGCCAGCAGCTGCCGTTGTTACACCGACCACGGCGGAACCCCAAAAACCCATCGTCGAGGCAGCAGTGGCCGAACCCCAAAAAGCCACCGTCGTCGAGGTAGAGCCCAAGAAAGCCACCGTCGAGGTAGCTGCTGCTGAACCCCAAAAACCCATTGTCCTACCGGTTGCTGAACCCAATAAAGCCACCGTCGAGGCGGCGATAGAGCCCCAAAAAGCCACCGTCGTCGAGGTAGAGCCCAAGAAAGCCACCGTCGAGGTAGCTGCTGCTGAGCCCCAAAAACCCATTGTCCTACCGGTTGCTGAACCCAATAAAGCCACCGTCGAGGCGGCGATAGAGCCCAAACAAGCCACCGTCGAGGCAGCGGTAGAGCCCCAAAAAGCCACCGTCGTCGAGGTAGAGCCCAAGAAAGCCACCGTCGAGGTAGCTGCTGCTGAGCCCCAAAAACCCATTGTCCTACCGGTTGCTGAACCCAATAAAGCCACCGTCGAGGCGGCGATAGAGCCCAAAAAAGCCACCGTCGAGGCAGCGGTAGAGCCCCAAAAAGCCACCGTCGTCGAGGTAGAGCCCAAGAAAGCCACCGTCGAGGTAGCTGCTGCTGAGCCCCAAAAACCCATTGTCCTACCGGTTGCTGAACCCAATAAAGCCACCGTCGAGGCGGCGATAGAGCCCAAACAAGCCACCGTCGAGGCAGCGGGAGAGCCCAAAAAAGCCACCGAAGTGGAGAAAACCGCCATGGAGGCACCGTCATCGGCAGTGGTAGTGGCGGCAGTGACAACAGAGAAGCAATGA

Coding sequence (CDS)

ATGGGTGGTTGTGCTAGCAAGCCAAAGACAAACCTTGAAAAGGAAGTCACCCCTTTGCCCATCTCCGTCTTTGAAGAGAAGGAGACGACGATGACGGTCCCGACTATCGAGGAGAAGGAAGTTAAGATTGGAAATGAAAAAAAGAGCGATGATCAAGTTGATGAGAAGAAGGTTTACGATGGAGAAAAGAAGGTTGAGGAGGATAATAGCCAACCGCTCTCTCTTGGATGTTTGCTCATTCAGGACAAAAAAGAGGTAGAAATTCCAACAGAGACCAAAAAAGAAGAGCCCAAAGAACAAGTCAAGGTTGAAGCAGCGAAACCAATAGAAGCAGCGCCAGCAGCTGCCGTTGTTACACCGACCACGGCGGAACCCCAAAAACCCATCGTCGAGGCAGCAGTGGCCGAACCCCAAAAAGCCACCGTCGTCGAGGTAGAGCCCAAGAAAGCCACCGTCGAGGTAGCTGCTGCTGAACCCCAAAAACCCATTGTCCTACCGGTTGCTGAACCCAATAAAGCCACCGTCGAGGCGGCGATAGAGCCCCAAAAAGCCACCGTCGTCGAGGTAGAGCCCAAGAAAGCCACCGTCGAGGTAGCTGCTGCTGAGCCCCAAAAACCCATTGTCCTACCGGTTGCTGAACCCAATAAAGCCACCGTCGAGGCGGCGATAGAGCCCAAACAAGCCACCGTCGAGGCAGCGGTAGAGCCCCAAAAAGCCACCGTCGTCGAGGTAGAGCCCAAGAAAGCCACCGTCGAGGTAGCTGCTGCTGAGCCCCAAAAACCCATTGTCCTACCGGTTGCTGAACCCAATAAAGCCACCGTCGAGGCGGCGATAGAGCCCAAAAAAGCCACCGTCGAGGCAGCGGTAGAGCCCCAAAAAGCCACCGTCGTCGAGGTAGAGCCCAAGAAAGCCACCGTCGAGGTAGCTGCTGCTGAGCCCCAAAAACCCATTGTCCTACCGGTTGCTGAACCCAATAAAGCCACCGTCGAGGCGGCGATAGAGCCCAAACAAGCCACCGTCGAGGCAGCGGGAGAGCCCAAAAAAGCCACCGAAGTGGAGAAAACCGCCATGGAGGCACCGTCATCGGCAGTGGTAGTGGCGGCAGTGACAACAGAGAAGCAATGA

Protein sequence

MGGCASKPKTNLEKEVTPLPISVFEEKETTMTVPTIEEKEVKIGNEKKSDDQVDEKKVYDGEKKVEEDNSQPLSLGCLLIQDKKEVEIPTETKKEEPKEQVKVEAAKPIEAAPAAAVVTPTTAEPQKPIVEAAVAEPQKATVVEVEPKKATVEVAAAEPQKPIVLPVAEPNKATVEAAIEPQKATVVEVEPKKATVEVAAAEPQKPIVLPVAEPNKATVEAAIEPKQATVEAAVEPQKATVVEVEPKKATVEVAAAEPQKPIVLPVAEPNKATVEAAIEPKKATVEAAVEPQKATVVEVEPKKATVEVAAAEPQKPIVLPVAEPNKATVEAAIEPKQATVEAAGEPKKATEVEKTAMEAPSSAVVVAAVTTEKQ

Homology

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BLAST of Lsi05G001990 vs. Swiss-Prot
Match: ETCC_KLEP3 (Electron transport complex subunit C OS=Klebsiella pneumoniae (strain 342) GN=rnfC PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 5.1e-07
Identity = 99/285 (34.74%), Postives = 135/285 (47.37%), Query Frame = 1


Query: 89  PTETKKEEPKEQVKVEAAKPIEAAPAAAVVTPTT--AEPQKPIVEAAVAEPQKATVVEVE 148
           P  ++    +E  K EA        AA+V TP+T  A+P+K  VEAA+A   +A   + E
Sbjct: 519 PDNSEAIAAREARKAEARARKAQQQAASVETPSTDAADPRKAAVEAAIA---RAKARKAE 578

Query: 149 PKKATVEVAAAEPQKPIVLPVAEPNKATVEAAIEPQKATVVEVEPKKATVEVAAAEPQKP 208
            + A VE   AEP         +P KA VEAAI   KA       +KA  +VA      P
Sbjct: 579 QQAAPVEAPVAEP--------VDPRKAAVEAAIARAKA-------RKAEQQVA------P 638

Query: 209 IVLPVAEPNKATVEAAIEPKQATVEAAVEPQKATVVEVEPKKATVEVAAAEPQKPIVLPV 268
           +  PVAEP        ++P++A VEAA+   KA       +KA  +VA      P+  PV
Sbjct: 639 VEAPVAEP--------VDPRKAAVEAAIARAKA-------RKAEQQVA------PVEAPV 698

Query: 269 AEPNKATVEAAIEPKKATVEAAVEPQKATVVEVEPKKATVEVAAAEPQKPIVLPVAEPNK 328
           AEP        ++P+KA VEAA+   KA   + E + A VE   AEP         +P K
Sbjct: 699 AEP--------VDPRKAAVEAAIARAKAR--KAEQQAAPVEAPVAEP--------VDPRK 737

Query: 329 ATVEAAIEPKQA--TVEAAGEPKKATEVEKTAMEAPSSAVVVAAV 370
           A VEAAI   +A    + A +P  A+     A + P  A V AA+
Sbjct: 759 AAVEAAIARAKARKAEQQAAQPDLAS---AAANDDPRKAAVAAAI 737

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BLAST of Lsi05G001990 vs. TrEMBL
Match: A0A0A0L739_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G210480 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 4.9e-49
Identity = 159/258 (61.63%), Postives = 179/258 (69.38%), Query Frame = 1


Query: 1   MGGCASKPKTNLEKEVTPLPISVFEEKETTMTVPTIEEKEVKIGNEKKSDDQVDEKKVYD 60
           MGGCASKPKT++EKEVTPLP+   E K+ T  +  ++E + + G+EK+SDDQV EKK+  
Sbjct: 1   MGGCASKPKTSIEKEVTPLPVE--ESKKETTIMAVLKEAKHENGSEKESDDQVKEKKIDV 60

Query: 61  GEKKVEEDNSQPLSLGCLLIQDKKEVEIPTETKKEEPKEQVKVEAAKPIEAAPAAAVVTP 120
            EKKVEED  QPLSLGCLLIQDKKEVEIPTETKKEEPKE VKVEAAKP EAAP AA+V P
Sbjct: 61  REKKVEED-IQPLSLGCLLIQDKKEVEIPTETKKEEPKE-VKVEAAKPKEAAPKAAIVAP 120

Query: 121 TTAEPQKPIVEAAVAEPQKATVVEVEPKKATVEVAAAEPQKP-IVLPVAEPNKAT-VEAA 180
           TTAEPQK       AEPQKAT V          V AAEPQKP  V+  AEP KAT V AA
Sbjct: 121 TTAEPQKLTAIVDAAEPQKATAV----------VQAAEPQKPTAVVAAAEPQKATPVVAA 180

Query: 181 IEPQKATVVEVEPKKATVEVAAAEPQKPI-VLPVAEPNKAT-VEAAIEPKQAT-VEAAVE 240
            EPQKAT V+     AT  VAAA PQK    +  AEP KAT V AA EP++AT V  A E
Sbjct: 181 AEPQKATPVQQLNHNATPAVAAAGPQKATPFVAAAEPQKATPVVAAAEPQKATPVVEAAE 240

Query: 241 PQKATVVEVEPKKATVEV 254
           P+KAT    E +K  VEV
Sbjct: 241 PKKAT----EGEKTGVEV 240

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BLAST of Lsi05G001990 vs. TrEMBL
Match: A0A0U3JUF5_9ENTR (Electron transport complex subunit C OS=Cedecea neteri GN=LK04_10110 PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.1e-08
Identity = 107/303 (35.31%), Postives = 140/303 (46.20%), Query Frame = 1


Query: 109 IEAAPAAAVVTPTTAEPQKPIVEAAVAEPQKATVVEVEPKKATVEVAAAEPQKPIVLPVA 168
           +EAA A A     +A  Q     AA  +P+KA   E    +A  + AAA  ++P   P A
Sbjct: 548 VEAAIARAKAKKASAPEQPAEAPAAEGDPRKAAD-EAAIARAKAKKAAAAAEQPADAPAA 607

Query: 169 E--PNKATVEAAI------------EPQKATVVEVEPKKATVEV---------AAAEPQK 228
           +  P KA +EAAI            +P +A   E +P+KA VE          AAA  ++
Sbjct: 608 DIDPRKAAIEAAIARAKAKKAAAAEQPAEAPPAEADPRKAAVEAAIARAKAKKAAAAAEQ 667

Query: 229 PIVLPVA--EPNKATVEAAIEPKQATVEAAVE-PQKATVVEVEPKKATVEV--------- 288
           P+  P A  +P KA VEAAI   +A   AA E P +A   EV+P+KA VE          
Sbjct: 668 PVEAPAADVDPRKAAVEAAIARAKAKKAAAAEQPDEAPAAEVDPRKAAVEAAIARAKAKK 727

Query: 289 AAAEPQKPIVLPVA--EPNKATVEAAIEPKKATVEAAVE-PQKATVVEVEPKKATVEVAA 348
           AAA  ++P   P A  +P KA VEAAI   KA   AA E P      EV+P+KA VE A 
Sbjct: 728 AAAAAEQPADAPAADIDPRKAAVEAAIARAKAKKAAAAEQPADVPAAEVDPRKAAVEAAI 787

Query: 349 AEPQKPIVLPVAEPNKATVEAAIEPKQATVEAAGEPKKATEVEKTAMEAPSSAVVVAAVT 374
           A  +       A   +A V++   P+   VEAA  P  A          P  A + AAV 
Sbjct: 788 ARAK---AKKAAAAQQAEVQSESSPE---VEAAASPDSAD---------PRKAAIAAAVA 834

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BLAST of Lsi05G001990 vs. TrEMBL
Match: W4EPX7_9BACL (DNA translocase FtsK OS=Viridibacillus arenosi FSL R5-213 GN=C176_16682 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 7.2e-08
Identity = 105/267 (39.33%), Postives = 132/267 (49.44%), Query Frame = 1


Query: 96  EPKEQVKVEAAKPIE-AAPAAAVVTPTTAEPQKPIVEAAVAEPQKATVVEVEPKKATVEV 155
           E  +QV VE  + +  AA     +  T  E  + I E  +   Q     EVE  +ATVE 
Sbjct: 260 EATKQVTVEVMESLHTAATEEHAIVETKLEEAQVITETEMNAAQAIPETEVEEVQATVET 319

Query: 156 AAAEPQKPIVLPVAEPNKATVEAAIEPQKATV-VEVEPKKATVEVAAAEPQKPIVLPVAE 215
              E Q  +   V E  +ATVE  +E  +ATV  EVE  +ATVE    E Q  +   V E
Sbjct: 320 KVEEVQATVETKVEEV-QATVETKVEEAQATVETEVEEVQATVETKVEEVQATVETEVEE 379

Query: 216 PNKATVEAAIEPKQATVEAAVEPQKATV-VEVEPKKATVEVAAAEPQKPIVLPVAEPNKA 275
             +ATVE  +E  QATVE  VE  +ATV  +VE  +ATVE    E Q            A
Sbjct: 380 V-QATVETKVEEVQATVETKVEEVQATVETKVEEVQATVETKVEEAQ------------A 439

Query: 276 TVEAAIEPKKATVEAAVEPQKATV-VEVEPKKATVEVAAAEPQKPIVLPVAEPNKATVEA 335
           TVE  +E  +ATVE  VE  +ATV  EVE  +ATVE    E Q  I     E  +ATVE 
Sbjct: 440 TVETEVEEVQATVETKVEEVQATVETEVEEVQATVETKVEEAQ-AIAETEVEEVQATVET 499

Query: 336 AIEPKQATVEAAGEPKKATEVEKTAME 359
            +E  QATVE   E  +A  V +T +E
Sbjct: 500 EVEEVQATVETKVE--EAQTVVETIVE 509

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BLAST of Lsi05G001990 vs. TrEMBL
Match: A0A0U5GLE4_9ENTR (Electron transport complex subunit C OS=Erwinia gerundensis GN=EM595_1719 PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 4.7e-07
Identity = 98/278 (35.25%), Postives = 139/278 (50.00%), Query Frame = 1


Query: 104 EAAKPIEAAP-AAAVVTPTTAEPQKPIVEAAVAEPQ-----KATVVEVEPKKATVEVAAA 163
           +AA+  +A P AA+     +A+P+K  VEAA+A  +     +A   + EP++AT    A 
Sbjct: 278 KAAQDGDAVPDAASADAEQSADPRKAAVEAAIARTKAKKAAQAAASDAEPQQATD--VAE 337

Query: 164 EPQKPIVLPVAEPNKATVEAAIEPQKA------TVVEVEPKKATVEVAAAEPQKPIVLPV 223
            PQ     P  +P KA VEAAI   KA         + EP++AT    A  PQ     PV
Sbjct: 338 NPQADA--PAVDPRKAAVEAAIARAKAKKAAQAAASDAEPRQATD--VAENPQADA--PV 397

Query: 224 AEPNKATVEAAIEPKQATVEAAVEPQKATVVEVEPKKATVEVAAAEPQKPIVLPVAEPNK 283
           A+P KA VEAAI   +A   A     +A   + EP++A   V  A+   P   PVA+P K
Sbjct: 398 ADPRKAAVEAAIARAKAKKAA-----QAAASDAEPQQAADVVNEAQANAPEAAPVADPRK 457

Query: 284 ATVEAAIEPKKATVEAAVEPQKATVVEVEPKKATVEVAAAEPQKPIVLPVAEPNKATVEA 343
           A VE AI   KA   A     +A   + EP++A   V  A+   P   P  +P +A ++A
Sbjct: 458 AAVEVAIARAKAKKAA-----QAAASDAEPQQAADVVNEAQADAPEAAPATDPRRAAIDA 517

Query: 344 AI---EPKQATVEAA--GEPKKATEVEKTAM-EAPSSA 364
           AI   + K+A   AA   EP++A +V   A  +AP +A
Sbjct: 518 AIARAKAKKAAQAAASDAEPQQAADVVNEAQADAPEAA 537

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BLAST of Lsi05G001990 vs. TrEMBL
Match: A0A0A3YVI9_9ENTR (Electron transport complex subunit C OS=Enterobacter cancerogenus GN=NH00_16145 PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 6.1e-07
Identity = 111/321 (34.58%), Postives = 140/321 (43.61%), Query Frame = 1


Query: 83  KKEVEIPTETKKEEPKEQVKVEAAKPIEAAPAAAVVTPTTAEPQKPIVEAAVA------- 142
           K  VE      K +       +A++P +  PAA V      +P+K  VEAA+A       
Sbjct: 545 KAAVEAAIARAKAKKASSAAEQASEPADVTPAAEV------DPRKAAVEAAIARAKAKKA 604

Query: 143 -------EPQKAT-VVEVEPKKATVEVAAAEPQKPIVLPVAEPNKATVEAAIEPQKAT-V 202
                  EP  A  V EV+P+KA VE A A  +       A+   AT E A EP   T  
Sbjct: 605 AAGEQVSEPADAAPVTEVDPRKAAVEAAIARAK-------AKKAAATGEQAPEPADVTPA 664

Query: 203 VEVEPKKATVEVAAAEPQKPIVLPVA-----EPNKATVEAAIEPKQATVEAAVEPQKATV 262
            EV+P+KA VE A A  +       A     EP   +  A ++P++A VEAA+   KA  
Sbjct: 665 AEVDPRKAAVEAAIARAKAKKAAAAAGEQAPEPADVSPAAEVDPRKAAVEAAIARAKA-- 724

Query: 263 VEVEPKKATVEVAAAEPQKPIVLPVA--EPNKATVEAAI---EPKKATV---EAAVEPQK 322
                KKA        P+   V P A  +P KA VEAAI   + KKA V   E A EP  
Sbjct: 725 -----KKAAAAAGEQAPEPADVTPAAEVDPRKAAVEAAIARAKAKKAAVAAGEQASEPAD 784

Query: 323 AT-VVEVEPKKATVEVAAAEPQKPIVLPVAEPNKATVEAAIEPKQATVEAAGEPKKATEV 374
            T   EV+P+KA VE A A  +       AE   A  EAA E   + VEAA  P  A   
Sbjct: 785 VTPAAEVDPRKAAVEAAIARAKAKKAAAAAEQTPAAAEAAPE-SSSEVEAAASPDSAD-- 835

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BLAST of Lsi05G001990 vs. NCBI nr
Match: gi|778680134|ref|XP_011651254.1| (PREDICTED: histone H1-II-like [Cucumis sativus])

HSP 1 Score: 207.2 bits (526), Expect = 4.9e-50
Identity = 157/249 (63.05%), Postives = 177/249 (71.08%), Query Frame = 1


Query: 1   MGGCASKPKTNLEKEVTPLPISVFEEKETTMTVPTIEEKEVKIGNEKKSDDQVDEKKVYD 60
           MGGCASKPKT++EKEVTPLP+   E K+ T  +  ++E + + G+EK+SDDQV EKK+  
Sbjct: 1   MGGCASKPKTSIEKEVTPLPVE--ESKKETTIMAVLKEAKHENGSEKESDDQVKEKKIDV 60

Query: 61  GEKKVEEDNSQPLSLGCLLIQDKKEVEIPTETKKEEPKEQVKVEAAKPIEAAPAAAVVTP 120
            EKKVEED  QPLSLGCLLIQDKKEVEIPTETKKEEPKE VKVEAAKP EAAP AA+V P
Sbjct: 61  REKKVEED-IQPLSLGCLLIQDKKEVEIPTETKKEEPKE-VKVEAAKPKEAAPKAAIVAP 120

Query: 121 TTAEPQKPIVEAAVAEPQKATVV--EVEPKKATVEVAAAEPQKPI-VLPVAEPNKAT-VE 180
           TTAEPQK       AEPQKAT V    EP+K T  VAAAEPQK   V+  AEP KAT V 
Sbjct: 121 TTAEPQKLTAIVDAAEPQKATAVVQAAEPQKPTAVVAAAEPQKATPVVAAAEPQKATPVV 180

Query: 181 AAIEPQKATVV---EVEPKKATVEVAAAEPQKPI-VLPVAEPNKAT--------VEAAIE 234
           AA EPQKAT V     EP+KAT  VAAAEPQK   V+  AEP KAT        VE+ +E
Sbjct: 181 AAAEPQKATPVVAAAAEPQKATPVVAAAEPQKATPVVEAAEPKKATEGEKTGVEVESLVE 240

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BLAST of Lsi05G001990 vs. NCBI nr
Match: gi|700202420|gb|KGN57553.1| (hypothetical protein Csa_3G210480 [Cucumis sativus])

HSP 1 Score: 203.4 bits (516), Expect = 7.1e-49
Identity = 159/258 (61.63%), Postives = 179/258 (69.38%), Query Frame = 1


Query: 1   MGGCASKPKTNLEKEVTPLPISVFEEKETTMTVPTIEEKEVKIGNEKKSDDQVDEKKVYD 60
           MGGCASKPKT++EKEVTPLP+   E K+ T  +  ++E + + G+EK+SDDQV EKK+  
Sbjct: 1   MGGCASKPKTSIEKEVTPLPVE--ESKKETTIMAVLKEAKHENGSEKESDDQVKEKKIDV 60

Query: 61  GEKKVEEDNSQPLSLGCLLIQDKKEVEIPTETKKEEPKEQVKVEAAKPIEAAPAAAVVTP 120
            EKKVEED  QPLSLGCLLIQDKKEVEIPTETKKEEPKE VKVEAAKP EAAP AA+V P
Sbjct: 61  REKKVEED-IQPLSLGCLLIQDKKEVEIPTETKKEEPKE-VKVEAAKPKEAAPKAAIVAP 120

Query: 121 TTAEPQKPIVEAAVAEPQKATVVEVEPKKATVEVAAAEPQKP-IVLPVAEPNKAT-VEAA 180
           TTAEPQK       AEPQKAT V          V AAEPQKP  V+  AEP KAT V AA
Sbjct: 121 TTAEPQKLTAIVDAAEPQKATAV----------VQAAEPQKPTAVVAAAEPQKATPVVAA 180

Query: 181 IEPQKATVVEVEPKKATVEVAAAEPQKPI-VLPVAEPNKAT-VEAAIEPKQAT-VEAAVE 240
            EPQKAT V+     AT  VAAA PQK    +  AEP KAT V AA EP++AT V  A E
Sbjct: 181 AEPQKATPVQQLNHNATPAVAAAGPQKATPFVAAAEPQKATPVVAAAEPQKATPVVEAAE 240

Query: 241 PQKATVVEVEPKKATVEV 254
           P+KAT    E +K  VEV
Sbjct: 241 PKKAT----EGEKTGVEV 240

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BLAST of Lsi05G001990 vs. NCBI nr
Match: gi|659112186|ref|XP_008456106.1| (PREDICTED: probable serine/threonine-protein kinase kinX [Cucumis melo])

HSP 1 Score: 155.6 bits (392), Expect = 1.7e-34
Identity = 110/176 (62.50%), Postives = 124/176 (70.45%), Query Frame = 1


Query: 1   MGGCASKPKTNLEKEVTPLPISVFEEKETTMTVPTIEEKEVKIGN-EKKSDDQVDEKKVY 60
           MGGCASKPKT +EKEVTPLP+    E+     VP    KE K+ N EK+SDDQVDEKKV 
Sbjct: 1   MGGCASKPKTGIEKEVTPLPV----EESKKEVVP----KEAKVENGEKESDDQVDEKKVD 60

Query: 61  DGEKKVEEDNSQPLSLGCLLIQDKKEVEIPTETKKEEPKEQVKVEAAKPIEAAPAAA-VV 120
             EKKVEED +QPLSLGCLLIQDKKEVEIPTETKKEEPKE+VKVEAAKPIEAAP A  +V
Sbjct: 61  VSEKKVEED-TQPLSLGCLLIQDKKEVEIPTETKKEEPKEEVKVEAAKPIEAAPEATPIV 120

Query: 121 TPTTAEPQKPIVEAAVAEPQKATVVEVEPKKATVEVAAAEPQKPIVLPVAEPNKAT 175
             TTAEPQK       AEP+KAT    + +K  VEV ++  +K  V   A P   T
Sbjct: 121 ALTTAEPQKATAVVEAAEPKKAT----DGEKTGVEVQSSAEKKTTVDEAASPAVTT 163

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BLAST of Lsi05G001990 vs. NCBI nr
Match: gi|497854825|ref|WP_010168981.1| (hypothetical protein [Epulopiscium sp. 'N.t. morphotype B'])

HSP 1 Score: 73.9 bits (180), Expect = 6.5e-10
Identity = 83/223 (37.22%), Postives = 110/223 (49.33%), Query Frame = 1


Query: 124 EPQKPIVEAAVAEPQKATVVEVEPKKATVEVAAAEPQKPIVLPVAEPNKATVEAAIEPQK 183
           EP+  IVEA      +      EP    VE A AEP+  IV   AEP    V+A+ EP+ 
Sbjct: 2   EPEAEIVEAFAEPAAEIVEASAEPVAEIVE-AFAEPEVEIVDAFAEPEVEIVDASAEPE- 61

Query: 184 ATVVEVEPKKATVEVAAAEPQKPIVLPVAEPNKATVEAAIEPKQATVEAAVEPQKATVVE 243
           A +VE          A+AEP   IV   AEP    VEA+ EP    V+A  EP+   V  
Sbjct: 62  AEIVE----------ASAEPVAEIVEASAEPAAEIVEASAEPVAEIVDAFAEPEVEIVEA 121

Query: 244 VEPKKATVEVAAAEPQKPIVLPVAEPNKATVEAAIEPKKATVEAAVEPQKATVVEVEPKK 303
               +  +  A+AEP+  IV   AEP    V+A++EP    VEA  EP+   V      +
Sbjct: 122 FAEPEVEIVDASAEPEVEIVDAFAEPVAEIVDASVEPVAEIVEAFAEPEAEIVEAFAEPE 181

Query: 304 ATVEVAAAEPQKPIVLPVAEPNKATVEAAIEPKQATVEAAGEP 347
           A +  A+AEP+  IV   AEP    V+A+ EP+   VEA+ EP
Sbjct: 182 AEIVDASAEPEAEIVDASAEPEAEIVDASAEPEAEVVEASAEP 212

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BLAST of Lsi05G001990 vs. NCBI nr
Match: gi|973251654|ref|WP_059109793.1| (electron transport complex subunit RsxC [Cedecea neteri])

HSP 1 Score: 69.3 bits (168), Expect = 1.6e-08
Identity = 107/303 (35.31%), Postives = 140/303 (46.20%), Query Frame = 1


Query: 109 IEAAPAAAVVTPTTAEPQKPIVEAAVAEPQKATVVEVEPKKATVEVAAAEPQKPIVLPVA 168
           +EAA A A     +A  Q     AA  +P+KA   E    +A  + AAA  ++P   P A
Sbjct: 548 VEAAIARAKAKKASAPEQPAEAPAAEGDPRKAAD-EAAIARAKAKKAAAAAEQPADAPAA 607

Query: 169 E--PNKATVEAAI------------EPQKATVVEVEPKKATVEV---------AAAEPQK 228
           +  P KA +EAAI            +P +A   E +P+KA VE          AAA  ++
Sbjct: 608 DIDPRKAAIEAAIARAKAKKAAAAEQPAEAPPAEADPRKAAVEAAIARAKAKKAAAAAEQ 667

Query: 229 PIVLPVA--EPNKATVEAAIEPKQATVEAAVE-PQKATVVEVEPKKATVEV--------- 288
           P+  P A  +P KA VEAAI   +A   AA E P +A   EV+P+KA VE          
Sbjct: 668 PVEAPAADVDPRKAAVEAAIARAKAKKAAAAEQPDEAPAAEVDPRKAAVEAAIARAKAKK 727

Query: 289 AAAEPQKPIVLPVA--EPNKATVEAAIEPKKATVEAAVE-PQKATVVEVEPKKATVEVAA 348
           AAA  ++P   P A  +P KA VEAAI   KA   AA E P      EV+P+KA VE A 
Sbjct: 728 AAAAAEQPADAPAADIDPRKAAVEAAIARAKAKKAAAAEQPADVPAAEVDPRKAAVEAAI 787

Query: 349 AEPQKPIVLPVAEPNKATVEAAIEPKQATVEAAGEPKKATEVEKTAMEAPSSAVVVAAVT 374
           A  +       A   +A V++   P+   VEAA  P  A          P  A + AAV 
Sbjct: 788 ARAK---AKKAAAAQQAEVQSESSPE---VEAAASPDSAD---------PRKAAIAAAVA 834

The following BLAST results are available for this feature:

BLAST of Lsi05G001990 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ETCC_KLEP3	5.1e-07	34.74	Electron transport complex subunit C OS=Klebsiella pneumoniae (strain 342) GN=rn...	[more]

BLAST of Lsi05G001990 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L739_CUCSA	4.9e-49	61.63	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G210480 PE=4 SV=1	[more]
A0A0U3JUF5_9ENTR	1.1e-08	35.31	Electron transport complex subunit C OS=Cedecea neteri GN=LK04_10110 PE=3 SV=1	[more]
W4EPX7_9BACL	7.2e-08	39.33	DNA translocase FtsK OS=Viridibacillus arenosi FSL R5-213 GN=C176_16682 PE=3 SV=...	[more]
A0A0U5GLE4_9ENTR	4.7e-07	35.25	Electron transport complex subunit C OS=Erwinia gerundensis GN=EM595_1719 PE=3 S...	[more]
A0A0A3YVI9_9ENTR	6.1e-07	34.58	Electron transport complex subunit C OS=Enterobacter cancerogenus GN=NH00_16145 ...	[more]

BLAST of Lsi05G001990 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi05G001990 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778680134\|ref\|XP_011651254.1\|	4.9e-50	63.05	PREDICTED: histone H1-II-like [Cucumis sativus]	[more]
gi\|700202420\|gb\|KGN57553.1\|	7.1e-49	61.63	hypothetical protein Csa_3G210480 [Cucumis sativus]	[more]
gi\|659112186\|ref\|XP_008456106.1\|	1.7e-34	62.50	PREDICTED: probable serine/threonine-protein kinase kinX [Cucumis melo]	[more]
gi\|497854825\|ref\|WP_010168981.1\|	6.5e-10	37.22	hypothetical protein [Epulopiscium sp. 'N.t. morphotype B']	[more]
gi\|973251654\|ref\|WP_059109793.1\|	1.6e-08	35.31	electron transport complex subunit RsxC [Cedecea neteri]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0051641	cellular localization
biological_process	GO:0016310	phosphorylation
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0043232	intracellular non-membrane-bounded organelle
cellular_component	GO:0044446	intracellular organelle part
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0016301	kinase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G001990.1	Lsi05G001990.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi05G001990	Csa3G210480	Cucumber (Chinese Long) v2	culsiB211
Lsi05G001990	CSPI03G18690	Wild cucumber (PI 183967)	cpilsiB209
Lsi05G001990	CmoCh16G003910	Cucurbita moschata (Rifu)	cmolsiB304
Lsi05G001990	Cla013053	Watermelon (97103) v1	lsiwmB361
Lsi05G001990	ClCG05G009850	Watermelon (Charleston Gray)	lsiwcgB332
Lsi05G001990	Cla97C05G092240	Watermelon (97103) v2	lsiwmbB329
Lsi05G001990	Bhi01G001241	Wax gourd	lsiwgoB431
Lsi05G001990	CsGy3G018530	Cucumber (Gy14) v2	cgyblsiB198
Lsi05G001990	Carg11294	Silver-seed gourd	carlsiB595
Lsi05G001990	CsaV3_3G018740	Cucumber (Chinese Long) v3	cuclsiB230

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi05G001990	Cucurbita maxima (Rimu)	cmalsiB316
Lsi05G001990	Cucurbita maxima (Rimu)	cmalsiB690
Lsi05G001990	Cucurbita moschata (Rifu)	cmolsiB683
Lsi05G001990	Cucurbita pepo (Zucchini)	cpelsiB177
Lsi05G001990	Cucurbita pepo (Zucchini)	cpelsiB369
Lsi05G001990	Melon (DHL92) v3.5.1	lsimeB368
Lsi05G001990	Melon (DHL92) v3.6.1	lsimedB384
Lsi05G001990	Silver-seed gourd	carlsiB346