Carg11294 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg11294
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_025 : 77152 .. 78549 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGAACTGCCTCGAACATCTTGAACCCTCTTCCTGTCTCCTCCATTTTTTTACCTTCTTTCTCGACATTCAGTGTTGACATGGGTGGCTGCGCTAGCAAGCCGAAGACCTACGAGAAAGAAGACACCCCCCTGCCCCTCCCTGTTGTCAAGGAGACCATACTGGCGGAGGTGACTATTGAGGAGAAGGAAGTGAAGGTTGAATGTGATCAAGTTTATGAGAAGAACATTCAGGAGGAACCCGTTTCGCTTGGGTCTTTGCTCCTTCAGGTAATTTAATTACTCTTGTGTTTTTTAATTGTAATTTTTTAAATTCTATAATTGGGTTTTTTGTTTTCTTTGTAGAATGAAGCGAAGAATGAGGCAGCTGAGGATAAGGAGGTGGAAGTTCCAATTAAGGCCCAAAATGATGAGCCCAATGAAGAAGGTAAGGTGGAGGCAGTAAATGTGGTGGATGATGCACCGCATGTAGTTGCTGTTGTTGCAATGGCGGCGGCTGAACCCCATAAACCTACCGTTGAGGATGTGGCGGTGTCCGAGAAAGACACTGTCCAGCTGGCTGTACAACCCCAGAAAGCCACTGTCGAGGCAGCGCCGGTAGAGCCCGAAAAGGTCGCCGTCGAGGCAGCGCCGGTAGTGCCCCAAAAGGTCGCCGTCGAGTCAGCGCCGGTAGTGCCCCAAAAGGCCGCCGTCGAGTCAGCGCCGGTGGTGCCCGAAAAGGCCGCCGTCGAGGTAGCGCCGGTGGTGCCCCAAAAGGCCGCCGTCGAGTCAGCGGCGGTTGTGCCCCAAAAGGCCGCCGTCGAGTCAGCGGCGGTTGTGCCCCAGAAGGCCGCCGTCGAGGCAGCGCCGGTAGTGCCCCAGAAGGCCGCCGTCGAGGCCGCGCCGGTAGTGCCCAAGAAGGCCGCCGTCGAGGCCGCGCCGGTAGTGCCCAAGAAGGCCGCCGTCGAGGCCGCGCCGGTAGTGCCCAAGAAGGCCGCCGTCGAGGCCGCGCCGGTAGTGCCCAATAAGGCCGCCGTCGAGGCCGCGCCGGTAGTGCCCCAGAAGGCAGCCGTCGAGGCCGCGCCAGTAGCTCCCCAAAAGGCCGCCGTCGTCGAGGCCGCGCCGGTAGCGCCACAAAAGGCCGCCGTCGAGGCAGCGGCAGTAGCGCCACAAAAGGCCGCCGTCGAGGCAGCGGCAGTAGTGCCACAGAAGGCAGCCGTCGAGGCCGCGCCGGTAGTGGTCGAGGCAGCGGCAGTAGCTCCCCAAAAGGCCGCCGTCGAGGCAGCGGTGGTAGAGCCCCAAAAAGCTATCGTCAAGGTAGCAGCAGAACTCACAAAAGCCCCCGAAGAGGAGAAGAAAACCACCGAAGCGACACCGTCACCGGCGGTGGCAGTGGCGGCGGCGACAAAAGAAAAACAATAG

mRNA sequence

TGAACTGCCTCGAACATCTTGAACCCTCTTCCTGTCTCCTCCATTTTTTTACCTTCTTTCTCGACATTCAGTGTTGACATGGGTGGCTGCGCTAGCAAGCCGAAGACCTACGAGAAAGAAGACACCCCCCTGCCCCTCCCTGTTGTCAAGGAGACCATACTGGCGGAGGTGACTATTGAGGAGAAGGAAGTGAAGGTTGAATGTGATCAAGTTTATGAGAAGAACATTCAGGAGGAACCCGTTTCGCTTGGGTCTTTGCTCCTTCAGAATGAAGCGAAGAATGAGGCAGCTGAGGATAAGGAGGTGGAAGTTCCAATTAAGGCCCAAAATGATGAGCCCAATGAAGAAGGTAAGGTGGAGGCAGTAAATGTGGTGGATGATGCACCGCATGTAGTTGCTGTTGTTGCAATGGCGGCGGCTGAACCCCATAAACCTACCGTTGAGGATGTGGCGGTGTCCGAGAAAGACACTGTCCAGCTGGCTGTACAACCCCAGAAAGCCACTGTCGAGGCAGCGCCGGTAGAGCCCGAAAAGGTCGCCGTCGAGGCAGCGCCGGTAGTGCCCCAAAAGGTCGCCGTCGAGTCAGCGCCGGTAGTGCCCCAAAAGGCCGCCGTCGAGTCAGCGCCGGTGGTGCCCGAAAAGGCCGCCGTCGAGGTAGCGCCGGTGGTGCCCCAAAAGGCCGCCGTCGAGTCAGCGGCGGTTGTGCCCCAAAAGGCCGCCGTCGAGTCAGCGGCGGTTGTGCCCCAGAAGGCCGCCGTCGAGGCAGCGCCGGTAGTGCCCCAGAAGGCCGCCGTCGAGGCCGCGCCGGTAGTGCCCAAGAAGGCCGCCGTCGAGGCCGCGCCGGTAGTGCCCAAGAAGGCCGCCGTCGAGGCCGCGCCGGTAGTGCCCAAGAAGGCCGCCGTCGAGGCCGCGCCGGTAGTGCCCAATAAGGCCGCCGTCGAGGCCGCGCCGGTAGTGCCCCAGAAGGCAGCCGTCGAGGCCGCGCCAGTAGCTCCCCAAAAGGCCGCCGTCGTCGAGGCCGCGCCGGTAGCGCCACAAAAGGCCGCCGTCGAGGCAGCGGCAGTAGCGCCACAAAAGGCCGCCGTCGAGGCAGCGGCAGTAGTGCCACAGAAGGCAGCCGTCGAGGCCGCGCCGGTAGTGGTCGAGGCAGCGGCAGTAGCTCCCCAAAAGGCCGCCGTCGAGGCAGCGGTGGTAGAGCCCCAAAAAGCTATCGTCAAGGTAGCAGCAGAACTCACAAAAGCCCCCGAAGAGGAGAAGAAAACCACCGAAGCGACACCGTCACCGGCGGTGGCAGTGGCGGCGGCGACAAAAGAAAAACAATAG

Coding sequence (CDS)

ATGGGTGGCTGCGCTAGCAAGCCGAAGACCTACGAGAAAGAAGACACCCCCCTGCCCCTCCCTGTTGTCAAGGAGACCATACTGGCGGAGGTGACTATTGAGGAGAAGGAAGTGAAGGTTGAATGTGATCAAGTTTATGAGAAGAACATTCAGGAGGAACCCGTTTCGCTTGGGTCTTTGCTCCTTCAGAATGAAGCGAAGAATGAGGCAGCTGAGGATAAGGAGGTGGAAGTTCCAATTAAGGCCCAAAATGATGAGCCCAATGAAGAAGGTAAGGTGGAGGCAGTAAATGTGGTGGATGATGCACCGCATGTAGTTGCTGTTGTTGCAATGGCGGCGGCTGAACCCCATAAACCTACCGTTGAGGATGTGGCGGTGTCCGAGAAAGACACTGTCCAGCTGGCTGTACAACCCCAGAAAGCCACTGTCGAGGCAGCGCCGGTAGAGCCCGAAAAGGTCGCCGTCGAGGCAGCGCCGGTAGTGCCCCAAAAGGTCGCCGTCGAGTCAGCGCCGGTAGTGCCCCAAAAGGCCGCCGTCGAGTCAGCGCCGGTGGTGCCCGAAAAGGCCGCCGTCGAGGTAGCGCCGGTGGTGCCCCAAAAGGCCGCCGTCGAGTCAGCGGCGGTTGTGCCCCAAAAGGCCGCCGTCGAGTCAGCGGCGGTTGTGCCCCAGAAGGCCGCCGTCGAGGCAGCGCCGGTAGTGCCCCAGAAGGCCGCCGTCGAGGCCGCGCCGGTAGTGCCCAAGAAGGCCGCCGTCGAGGCCGCGCCGGTAGTGCCCAAGAAGGCCGCCGTCGAGGCCGCGCCGGTAGTGCCCAAGAAGGCCGCCGTCGAGGCCGCGCCGGTAGTGCCCAATAAGGCCGCCGTCGAGGCCGCGCCGGTAGTGCCCCAGAAGGCAGCCGTCGAGGCCGCGCCAGTAGCTCCCCAAAAGGCCGCCGTCGTCGAGGCCGCGCCGGTAGCGCCACAAAAGGCCGCCGTCGAGGCAGCGGCAGTAGCGCCACAAAAGGCCGCCGTCGAGGCAGCGGCAGTAGTGCCACAGAAGGCAGCCGTCGAGGCCGCGCCGGTAGTGGTCGAGGCAGCGGCAGTAGCTCCCCAAAAGGCCGCCGTCGAGGCAGCGGTGGTAGAGCCCCAAAAAGCTATCGTCAAGGTAGCAGCAGAACTCACAAAAGCCCCCGAAGAGGAGAAGAAAACCACCGAAGCGACACCGTCACCGGCGGTGGCAGTGGCGGCGGCGACAAAAGAAAAACAATAG

Protein sequence

MGGCASKPKTYEKEDTPLPLPVVKETILAEVTIEEKEVKVECDQVYEKNIQEEPVSLGSLLLQNEAKNEAAEDKEVEVPIKAQNDEPNEEGKVEAVNVVDDAPHVVAVVAMAAAEPHKPTVEDVAVSEKDTVQLAVQPQKATVEAAPVEPEKVAVEAAPVVPQKVAVESAPVVPQKAAVESAPVVPEKAAVEVAPVVPQKAAVESAAVVPQKAAVESAAVVPQKAAVEAAPVVPQKAAVEAAPVVPKKAAVEAAPVVPKKAAVEAAPVVPKKAAVEAAPVVPNKAAVEAAPVVPQKAAVEAAPVAPQKAAVVEAAPVAPQKAAVEAAAVAPQKAAVEAAAVVPQKAAVEAAPVVVEAAAVAPQKAAVEAAVVEPQKAIVKVAAELTKAPEEEKKTTEATPSPAVAVAAATKEKQ

Homology

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BLAST of Carg11294 vs. NCBI nr
Match: XP_022985121.1 (uncharacterized protein KIAA0754 [Cucurbita maxima])

HSP 1 Score: 132.9 bits (333), Expect = 2.5e-27
Identity = 83/136 (61.03%), Postives = 95/136 (69.85%), Query Frame = 0


Query: 1   MGGCASKPKTYEKEDTPLPLPVVKETILAEVTIEEKEVKVECDQVYEKNIQEEPVSLGSL 60
           MGGCASKPKTYEKED PLPLPVVKE ++AE TIEE              I+E P+SLGSL
Sbjct: 1   MGGCASKPKTYEKEDAPLPLPVVKEAVVAERTIEE--------------IREVPISLGSL 60

Query: 61  LLQNEAKNEAAED-KEVEVPIKAQNDEPNEEGKVEAVNVVDDAPHVVAVVAMAAAEPHKP 120
           LLQNEAK EAAED KEV +PIKAQN EP++E KVE +NVVD AP +             P
Sbjct: 61  LLQNEAKEEAAEDQKEVGLPIKAQNQEPSQEAKVEPLNVVDAAPPI-------------P 109

Query: 121 TVEDVAVSEKDTVQLA 136
           TVE+VAVSEK T++ A
Sbjct: 121 TVEEVAVSEKATLESA 109

The following BLAST results are available for this feature:

BLAST of Carg11294 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022985121.1	2.5e-27	61.03	uncharacterized protein KIAA0754 [Cucurbita maxima]	[more]

BLAST of Carg11294 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg11294 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg11294 vs. TrEMBL


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0000226	microtubule cytoskeleton organization
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005874	microtubule
cellular_component	GO:0045298	tubulin complex
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005516	calmodulin binding
molecular_function	GO:0008017	microtubule binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg11294-RA	Carg11294-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 386..414

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg11294	Cla013053	Watermelon (97103) v1	carwmB0655
Carg11294	MELO3C019496	Melon (DHL92) v3.5.1	carmeB0651
Carg11294	ClCG05G009850	Watermelon (Charleston Gray)	carwcgB0636
Carg11294	CmaCh16G003660	Cucurbita maxima (Rimu)	carcmaB0924
Carg11294	CmaCh04G005060	Cucurbita maxima (Rimu)	carcmaB0925
Carg11294	CmoCh16G003910	Cucurbita moschata (Rifu)	carcmoB0898
Carg11294	Lsi05G001990	Bottle gourd (USVL1VR-Ls)	carlsiB595
Carg11294	CsaV3_3G018740	Cucumber (Chinese Long) v3	carcucB0687

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg11294	Carg08175	Silver-seed gourd	carcarB403

The following block(s) are covering this gene:


Gene	Organism	Block
Carg11294	Cucumber (Gy14) v2	carcgybB0650
Carg11294	Cucurbita moschata (Rifu)	carcmoB0899
Carg11294	Cucurbita pepo (Zucchini)	carcpeB0926
Carg11294	Cucurbita pepo (Zucchini)	carcpeB0927
Carg11294	Wild cucumber (PI 183967)	carcpiB0685
Carg11294	Cucumber (Chinese Long) v2	carcuB0675
Carg11294	Melon (DHL92) v3.6.1	carmedB0661
Carg11294	Watermelon (97103) v2	carwmbB0681
Carg11294	Wax gourd	carwgoB0771