Carg08175 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg08175
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_050 : 1132206 .. 1133498 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAAGAGAAAGAAGTCCTAATTTGGCCTTCTTTCTCTCCAACATCTTCCTCTCTCTTTTTTTAACATCTTTTTAACTCCCTTATAAACATGGGTGGTTGCACTAGCAAGCCTAAGACCATGGAGAAGGAAGGCGTCCTCGCCCCTACCTCTGTTCCCGTTCTTGTTGTTAAGGAGTCGAAGAAGACGAAGGATGCACGATCGAAGAAGGAGAAGGATGTGAATGTTGAAAGTGAAGAGAAAAAGAGTGATGATGATAATGAAGCTAATGAGAAGAAGGTTGAGGTATACAAGAATTTCAATGTACCCATGATCTTGTTCTGATTTTAATATCAGATTTGAATCGATGACACCAATTTTCAGTCCTATGCTCTATCAATTGAGTTCATTTTTGACACATTTTCCTTATTTCAATAGCAACGGGAGTATCTCGACTATTTTTTGACACATTATTCTTCTTTCATTTCCGTGCTAACTTCCATCTTCATGTCCGTGTCTTTTCTTAGGGTGAAGCAACCAAAGAAGCAATCGAGGACAAAAAGGAGAAGCCTAAAGAAGAAGAGCACAAAGAAGGCGCGAAGGTTCAAGCAGCATCGCCTGTCGCCACCACTGCCGCACCTGCGGTGGTCGAAGACAAAAATGCCGCTGTCGAAGTAGCTGCTGTCGTGCCGAAGGAACTCACCGTCGAAGTAGCGGCTATCGATCATAAGAAACCCACCGTCGAGGCACCGGTGGAGGCGAAGAAGCCCGCCGTCGAGGCACCGGTGGAGGCGAGGAAGCCCGCCGTCGAGGCGCCGGTGGAGGCGAGGAAGCCCGCCGTCGAGGCGCCGGTAGAGGCGAAGAAGCCCGCCGTCGAGGCGCCGGTAGAGGCGAAGAAGCCCGCCGTCGAGGCGCCGGTAGAGGCGAAGAAGCCCGCCGTCGAGGCGCCGGTAGAGGCGAAGAAGCCCGCCGTCGAGGCACCGGTAGAGGCAAAGAAGCCCGCCGTCGAGGCACCGGTAACGGCCGAGAAACCCTCCGTCGAGGCACCAGTAGAGGCGAAGAAACCCTCCGTCGAGGCACCAGTAGAGGCAAAGAAGCCCGCCGTCGAGGCACCGGTAGAGGCAAAGAAGCCCGCCGTCGAGGCACCGGTAGAGGCAAAGAAGCCCGCCGTCGAGGCACCGGTAGAGGCAAAGAAGCCCGCCGTCGAGGCACCAGTAGAGGCAAAGAAGCCCGCCGTCGAGGCACCAGTAGAGGCGGAGAAACCAAGCGTTGAGGCGGCAGCATCAGCAGCAGTGGCAGCGGAACAAAAACATTAG

mRNA sequence

AGAAGAGAAAGAAGTCCTAATTTGGCCTTCTTTCTCTCCAACATCTTCCTCTCTCTTTTTTTAACATCTTTTTAACTCCCTTATAAACATGGGTGGTTGCACTAGCAAGCCTAAGACCATGGAGAAGGAAGGCGTCCTCGCCCCTACCTCTGTTCCCGTTCTTGTTGTTAAGGAGTCGAAGAAGACGAAGGATGCACGATCGAAGAAGGAGAAGGATGTGAATGTTGAAAGTGAAGAGAAAAAGAGTGATGATGATAATGAAGCTAATGAGAAGAAGGTTGAGGGTGAAGCAACCAAAGAAGCAATCGAGGACAAAAAGGAGAAGCCTAAAGAAGAAGAGCACAAAGAAGGCGCGAAGGTTCAAGCAGCATCGCCTGTCGCCACCACTGCCGCACCTGCGGTGGTCGAAGACAAAAATGCCGCTGTCGAAGTAGCTGCTGTCGTGCCGAAGGAACTCACCGTCGAAGTAGCGGCTATCGATCATAAGAAACCCACCGTCGAGGCACCGGTGGAGGCGAAGAAGCCCGCCGTCGAGGCACCGGTGGAGGCGAGGAAGCCCGCCGTCGAGGCGCCGGTGGAGGCGAGGAAGCCCGCCGTCGAGGCGCCGGTAGAGGCGAAGAAGCCCGCCGTCGAGGCGCCGGTAGAGGCGAAGAAGCCCGCCGTCGAGGCGCCGGTAGAGGCGAAGAAGCCCGCCGTCGAGGCGCCGGTAGAGGCGAAGAAGCCCGCCGTCGAGGCACCGGTAGAGGCAAAGAAGCCCGCCGTCGAGGCACCGGTAACGGCCGAGAAACCCTCCGTCGAGGCACCAGTAGAGGCGAAGAAACCCTCCGTCGAGGCACCAGTAGAGGCAAAGAAGCCCGCCGTCGAGGCACCGGTAGAGGCAAAGAAGCCCGCCGTCGAGGCACCGGTAGAGGCAAAGAAGCCCGCCGTCGAGGCACCGGTAGAGGCAAAGAAGCCCGCCGTCGAGGCACCAGTAGAGGCAAAGAAGCCCGCCGTCGAGGCACCAGTAGAGGCGGAGAAACCAAGCGTTGAGGCGGCAGCATCAGCAGCAGTGGCAGCGGAACAAAAACATTAG

Coding sequence (CDS)

ATGGGTGGTTGCACTAGCAAGCCTAAGACCATGGAGAAGGAAGGCGTCCTCGCCCCTACCTCTGTTCCCGTTCTTGTTGTTAAGGAGTCGAAGAAGACGAAGGATGCACGATCGAAGAAGGAGAAGGATGTGAATGTTGAAAGTGAAGAGAAAAAGAGTGATGATGATAATGAAGCTAATGAGAAGAAGGTTGAGGGTGAAGCAACCAAAGAAGCAATCGAGGACAAAAAGGAGAAGCCTAAAGAAGAAGAGCACAAAGAAGGCGCGAAGGTTCAAGCAGCATCGCCTGTCGCCACCACTGCCGCACCTGCGGTGGTCGAAGACAAAAATGCCGCTGTCGAAGTAGCTGCTGTCGTGCCGAAGGAACTCACCGTCGAAGTAGCGGCTATCGATCATAAGAAACCCACCGTCGAGGCACCGGTGGAGGCGAAGAAGCCCGCCGTCGAGGCACCGGTGGAGGCGAGGAAGCCCGCCGTCGAGGCGCCGGTGGAGGCGAGGAAGCCCGCCGTCGAGGCGCCGGTAGAGGCGAAGAAGCCCGCCGTCGAGGCGCCGGTAGAGGCGAAGAAGCCCGCCGTCGAGGCGCCGGTAGAGGCGAAGAAGCCCGCCGTCGAGGCGCCGGTAGAGGCGAAGAAGCCCGCCGTCGAGGCACCGGTAGAGGCAAAGAAGCCCGCCGTCGAGGCACCGGTAACGGCCGAGAAACCCTCCGTCGAGGCACCAGTAGAGGCGAAGAAACCCTCCGTCGAGGCACCAGTAGAGGCAAAGAAGCCCGCCGTCGAGGCACCGGTAGAGGCAAAGAAGCCCGCCGTCGAGGCACCGGTAGAGGCAAAGAAGCCCGCCGTCGAGGCACCGGTAGAGGCAAAGAAGCCCGCCGTCGAGGCACCAGTAGAGGCAAAGAAGCCCGCCGTCGAGGCACCAGTAGAGGCGGAGAAACCAAGCGTTGAGGCGGCAGCATCAGCAGCAGTGGCAGCGGAACAAAAACATTAG

Protein sequence

MGGCTSKPKTMEKEGVLAPTSVPVLVVKESKKTKDARSKKEKDVNVESEEKKSDDDNEANEKKVEGEATKEAIEDKKEKPKEEEHKEGAKVQAASPVATTAAPAVVEDKNAAVEVAAVVPKELTVEVAAIDHKKPTVEAPVEAKKPAVEAPVEARKPAVEAPVEARKPAVEAPVEAKKPAVEAPVEAKKPAVEAPVEAKKPAVEAPVEAKKPAVEAPVEAKKPAVEAPVTAEKPSVEAPVEAKKPSVEAPVEAKKPAVEAPVEAKKPAVEAPVEAKKPAVEAPVEAKKPAVEAPVEAKKPAVEAPVEAEKPSVEAAASAAVAAEQKH

Homology

[Close]

BLAST of Carg08175 vs. NCBI nr
Match: XP_022937272.1 (circumsporozoite protein-like [Cucurbita moschata])

HSP 1 Score: 85.1 bits (209), Expect = 4.8e-13
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 0


Query: 1  MGGCTSKPKTMEKEGVLAPTSVPVLVVKESKKTKDARSKKEKD 44
          MGGCTSKPKTMEKEGVLAPTSVPVLVVKESKKTKDARSKKEKD
Sbjct: 1  MGGCTSKPKTMEKEGVLAPTSVPVLVVKESKKTKDARSKKEKD 43

[Close]

BLAST of Carg08175 vs. NCBI nr
Match: XP_022942985.1 (neurofilament heavy polypeptide isoform X1 [Cucurbita moschata])

HSP 1 Score: 77.4 bits (189), Expect = 1.0e-10
Identity = 84/116 (72.41%), Postives = 86/116 (74.14%), Query Frame = 0


Query: 1   MGGCTSKPKTMEKEGVLAPTSVPVLVVKESKKTKDARSKKEKDXXXXXXXXXXXXXXXXX 60
           MGGCTSKPKTMEKE VLAPTSVP+LVVKESKKTKD     E                   
Sbjct: 1   MGGCTSKPKTMEKEAVLAPTSVPLLVVKESKKTKDDNEANE------------------- 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAASPVATTAAPAVVEDKNAAVEVA 117
            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    PVATTAAPAVVEDKNAAV+VA
Sbjct: 61  -XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVATTAAPAVVEDKNAAVQVA 96

[Close]

BLAST of Carg08175 vs. NCBI nr
Match: XP_022981590.1 (fibrous sheath CABYR-binding protein-like [Cucurbita maxima])

HSP 1 Score: 74.7 bits (182), Expect = 6.5e-10
Identity = 73/117 (62.39%), Postives = 80/117 (68.38%), Query Frame = 0


Query: 1   MGGCTSKPKTME-KEGVLAPTSVPVLVVKESKKTKDARSKKEKDXXXXXXXXXXXXXXXX 60
           MGGCTSKPKTM+ KEGVL PTS PVLVV+E+ + K+A SKKEKD                
Sbjct: 1   MGGCTSKPKTMDKKEGVLVPTSAPVLVVEETAR-KEATSKKEKD-------VKVENRQRK 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAASPVATTAAPAVVEDKNAAVEVA 117
                         XXXXXXXXXXXXXXXXXX AASPVATTAAPA++EDKNAAVEVA
Sbjct: 61  FDDDEANEKVEGKAXXXXXXXXXXXXXXXXXXXAASPVATTAAPALLEDKNAAVEVA 109

[Close]

BLAST of Carg08175 vs. NCBI nr
Match: XP_022942986.1 (fibrous sheath CABYR-binding protein isoform X2 [Cucurbita moschata])

HSP 1 Score: 74.3 bits (181), Expect = 8.4e-10
Identity = 83/116 (71.55%), Postives = 85/116 (73.28%), Query Frame = 0


Query: 1   MGGCTSKPKTMEKEGVLAPTSVPVLVVKESKKTKDARSKKEKDXXXXXXXXXXXXXXXXX 60
           MGGCTSKPKTMEKE VLAPTSVP+LVVKESKKTKD     E                   
Sbjct: 1   MGGCTSKPKTMEKEAVLAPTSVPLLVVKESKKTKDDNEANE------------------- 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAASPVATTAAPAVVEDKNAAVEVA 117
            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     VATTAAPAVVEDKNAAV+VA
Sbjct: 61  -XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVATTAAPAVVEDKNAAVQVA 96

The following BLAST results are available for this feature:

BLAST of Carg08175 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022937272.1	4.8e-13	100.00	circumsporozoite protein-like [Cucurbita moschata]	[more]
XP_022942985.1	1.0e-10	72.41	neurofilament heavy polypeptide isoform X1 [Cucurbita moschata]	[more]
XP_022981590.1	6.5e-10	62.39	fibrous sheath CABYR-binding protein-like [Cucurbita maxima]	[more]
XP_022942986.1	8.4e-10	71.55	fibrous sheath CABYR-binding protein isoform X2 [Cucurbita moschata]	[more]

BLAST of Carg08175 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg08175 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg08175 vs. TrEMBL


Match Name	E-value	Identity	Description

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0000226	microtubule cytoskeleton organization

Vocabulary: **Cellular Component**
Term	Definition
GO:0005874	microtubule

Vocabulary: **Molecular Function**
Term	Definition
GO:0008017	microtubule binding
GO:0005516	calmodulin binding

Vocabulary: **INTERPRO**
Term	Definition
IPR007882	MAP6

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000226	microtubule cytoskeleton organization
cellular_component	GO:0005874	microtubule
cellular_component	GO:0045298	tubulin complex
molecular_function	GO:0005516	calmodulin binding
molecular_function	GO:0008017	microtubule binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg08175-RA	Carg08175-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 139..327
None	No IPR available	PANTHER	PTHR14759:SF7	SUBFAMILY NOT NAMED	coord: 203..313
IPR007882	Microtubule-associated protein 6	PANTHER	PTHR14759	STOP PROTEIN	coord: 203..313

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg08175	CmaCh04G005060	Cucurbita maxima (Rimu)	carcmaB0529
Carg08175	CmoCh04G005440	Cucurbita moschata (Rifu)	carcmoB0514

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg08175	Carg11294	Silver-seed gourd	carcarB403

The following block(s) are covering this gene:


Gene	Organism	Block
Carg08175	Cucumber (Gy14) v2	carcgybB0380
Carg08175	Cucurbita maxima (Rimu)	carcmaB0526
Carg08175	Cucurbita moschata (Rifu)	carcmoB0509
Carg08175	Cucurbita pepo (Zucchini)	carcpeB0523
Carg08175	Cucurbita pepo (Zucchini)	carcpeB0527
Carg08175	Wild cucumber (PI 183967)	carcpiB0405
Carg08175	Cucumber (Chinese Long) v2	carcuB0400
Carg08175	Cucumber (Chinese Long) v3	carcucB0403
Carg08175	Bottle gourd (USVL1VR-Ls)	carlsiB346
Carg08175	Melon (DHL92) v3.5.1	carmeB0379
Carg08175	Melon (DHL92) v3.5.1	carmeB0380
Carg08175	Melon (DHL92) v3.6.1	carmedB0384
Carg08175	Watermelon (Charleston Gray)	carwcgB0369
Carg08175	Watermelon (Charleston Gray)	carwcgB0370
Carg08175	Watermelon (97103) v1	carwmB0370
Carg08175	Watermelon (97103) v1	carwmB0371
Carg08175	Watermelon (97103) v2	carwmbB0395
Carg08175	Watermelon (97103) v2	carwmbB0396
Carg08175	Wax gourd	carwgoB0458
Carg08175	Wax gourd	carwgoB0459