Bhi01G001241 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi01G001241
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Unknown protein
Location	chr1 : 34526510 .. 34527594 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTTTCATCATCCTCAGCCTTCAACTTGCTTTTTCTTTTCATTTCTCTTCTCCAAATCCCTTCTGATTCCTTTTAACAAGAAGAGAAAGAAGTACTTTGGTCTTCTTTCTCTCAACCCCATTGTCTTCTCTCTTTTTTAAGTTAAAACCTTTTCTTCTCTCCCAAATCTTTAACATGGGTGGTTGTGCTAGCAAGCCCAAGACCACCACTGAGAAAGAAGTCACCCCCTTGCCCGTCCCCGTCGTTAAAGTGTCGAAGGAGACGACAATGGCGATACCGAGTATCAAGGAGAAGGAAGTCGAGGTCGAAACTGAAGAGAAAAAGAGTGATGATCAAGTTGATGTGAAGAAGGTTGATCAAGGTGAAAAGAAGGTTGAGGAGGAGGATAACCAACCGCTCTCTCTCGGATGTTTGCTCATTCAGGTTCTTTCTTAAAACTTTCTCAGAAAATAGTTAGTGCGTCAAAAAACTTAGCGTTAACCTTTTTTTTTATTATTATTTTTTTTATTTTTAGGACAAACAAGAAGTGGAAATTCCACCAGAGCCCAAAAAAGAGGAGCCCAAAGAGGAAGTCAAGGATGAGGCAGCGAAACCAACAGAAGCAGCTCCAGCAGCGGTGCCGGAACCTCAAAAATCCATTGTCGAGGCAGCGGTGCCGGAGCCCCAGAAAGCCACTGCCGAGGTAGCAGCGCCTGAACCCCAAAAAGCCACCGTCGTCGAGGCAGAGCCTAAGAAAGCCGCCGTCGAGCCAGCTGCGGCTGTACCCGAGAAACCCATCGTCGAGGCGGCGGTAGAACCCAAAAAAGCCACCGAAGAGGAGAAGAAAACCGCCGTGGAGGCACCTAAAACAGTTGAAACCAACGTTGAGGCACCATCACCGGCAGTAGCAGTGGCAACAGAGAAGCAATGATTAATGTTTTTTTTTTGGAAAGAAAGACGTTGCATAAATCTGAGGGAAATTTCTAGACAGAAGATTTGATACAAAATGGAATTCGTTGCATTTGGAACATTTAATTTCTCTTTATCATTCAGAAATTGCTCATAATTTGATTCTTCCCATTGAAAATGTAAACTAGAATTCGAG

mRNA sequence

AATTTTCATCATCCTCAGCCTTCAACTTGCTTTTTCTTTTCATTTCTCTTCTCCAAATCCCTTCTGATTCCTTTTAACAAGAAGAGAAAGAAGTACTTTGGTCTTCTTTCTCTCAACCCCATTGTCTTCTCTCTTTTTTAAGTTAAAACCTTTTCTTCTCTCCCAAATCTTTAACATGGGTGGTTGTGCTAGCAAGCCCAAGACCACCACTGAGAAAGAAGTCACCCCCTTGCCCGTCCCCGTCGTTAAAGTGTCGAAGGAGACGACAATGGCGATACCGAGTATCAAGGAGAAGGAAGTCGAGGTCGAAACTGAAGAGAAAAAGAGTGATGATCAAGTTGATGTGAAGAAGGTTGATCAAGGTGAAAAGAAGGTTGAGGAGGAGGATAACCAACCGCTCTCTCTCGGATGTTTGCTCATTCAGGACAAACAAGAAGTGGAAATTCCACCAGAGCCCAAAAAAGAGGAGCCCAAAGAGGAAGTCAAGGATGAGGCAGCGAAACCAACAGAAGCAGCTCCAGCAGCGGTGCCGGAACCTCAAAAATCCATTGTCGAGGCAGCGGTGCCGGAGCCCCAGAAAGCCACTGCCGAGGTAGCAGCGCCTGAACCCCAAAAAGCCACCGTCGTCGAGGCAGAGCCTAAGAAAGCCGCCGTCGAGCCAGCTGCGGCTGTACCCGAGAAACCCATCGTCGAGGCGGCGGTAGAACCCAAAAAAGCCACCGAAGAGGAGAAGAAAACCGCCGTGGAGGCACCTAAAACAGTTGAAACCAACGTTGAGGCACCATCACCGGCAGTAGCAGTGGCAACAGAGAAGCAATGATTAATGTTTTTTTTTTGGAAAGAAAGACGTTGCATAAATCTGAGGGAAATTTCTAGACAGAAGATTTGATACAAAATGGAATTCGTTGCATTTGGAACATTTAATTTCTCTTTATCATTCAGAAATTGCTCATAATTTGATTCTTCCCATTGAAAATGTAAACTAGAATTCGAG

Coding sequence (CDS)

ATGGGTGGTTGTGCTAGCAAGCCCAAGACCACCACTGAGAAAGAAGTCACCCCCTTGCCCGTCCCCGTCGTTAAAGTGTCGAAGGAGACGACAATGGCGATACCGAGTATCAAGGAGAAGGAAGTCGAGGTCGAAACTGAAGAGAAAAAGAGTGATGATCAAGTTGATGTGAAGAAGGTTGATCAAGGTGAAAAGAAGGTTGAGGAGGAGGATAACCAACCGCTCTCTCTCGGATGTTTGCTCATTCAGGACAAACAAGAAGTGGAAATTCCACCAGAGCCCAAAAAAGAGGAGCCCAAAGAGGAAGTCAAGGATGAGGCAGCGAAACCAACAGAAGCAGCTCCAGCAGCGGTGCCGGAACCTCAAAAATCCATTGTCGAGGCAGCGGTGCCGGAGCCCCAGAAAGCCACTGCCGAGGTAGCAGCGCCTGAACCCCAAAAAGCCACCGTCGTCGAGGCAGAGCCTAAGAAAGCCGCCGTCGAGCCAGCTGCGGCTGTACCCGAGAAACCCATCGTCGAGGCGGCGGTAGAACCCAAAAAAGCCACCGAAGAGGAGAAGAAAACCGCCGTGGAGGCACCTAAAACAGTTGAAACCAACGTTGAGGCACCATCACCGGCAGTAGCAGTGGCAACAGAGAAGCAATGA

Protein sequence

MGGCASKPKTTTEKEVTPLPVPVVKVSKETTMAIPSIKEKEVEVETEEKKSDDQVDVKKVDQGEKKVEEEDNQPLSLGCLLIQDKQEVEIPPEPKKEEPKEEVKDEAAKPTEAAPAAVPEPQKSIVEAAVPEPQKATAEVAAPEPQKATVVEAEPKKAAVEPAAAVPEKPIVEAAVEPKKATEEEKKTAVEAPKTVETNVEAPSPAVAVATEKQ

Homology

[Close]

BLAST of Bhi01G001241 vs. TrEMBL
Match: tr|A0A1S4E0Y5|A0A1S4E0Y5_CUCME (probable serine/threonine-protein kinase kinX OS=Cucumis melo OX=3656 GN=LOC103496142 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 4.6e-05
Identity = 49/88 (55.68%), Postives = 54/88 (61.36%), Query Frame = 0


Query: 59  KVDQGEKKVE---------------EEDNQPLSLGCLLIQDKQEVEIPPEPKKXXXXXXX 118
           KV+ GEK+ +               EED QPLSLGCLLIQDK+EVEIP E KK XXXXXX
Sbjct: 34  KVENGEKESDDXXXXXXXXXXXXXXEEDTQPLSLGCLLIQDKKEVEIPTETKKEXXXXXX 93

Query: 119 XXXXXXXXEAAPAAVP-------EPQKS 125
           XXXX    EAAP A P       EPQK+
Sbjct: 94  XXXXAKPIEAAPEATPIVALTTAEPQKA 121

[Close]

BLAST of Bhi01G001241 vs. NCBI nr
Match: XP_016901902.1 (PREDICTED: probable serine/threonine-protein kinase kinX [Cucumis melo])

HSP 1 Score: 57.4 bits (137), Expect = 7.0e-05
Identity = 49/88 (55.68%), Postives = 54/88 (61.36%), Query Frame = 0


Query: 59  KVDQGEKKVE---------------EEDNQPLSLGCLLIQDKQEVEIPPEPKKXXXXXXX 118
           KV+ GEK+ +               EED QPLSLGCLLIQDK+EVEIP E KK XXXXXX
Sbjct: 34  KVENGEKESDDXXXXXXXXXXXXXXEEDTQPLSLGCLLIQDKKEVEIPTETKKEXXXXXX 93

Query: 119 XXXXXXXXEAAPAAVP-------EPQKS 125
           XXXX    EAAP A P       EPQK+
Sbjct: 94  XXXXAKPIEAAPEATPIVALTTAEPQKA 121

The following BLAST results are available for this feature:

BLAST of Bhi01G001241 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi01G001241 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi01G001241 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4E0Y5\|A0A1S4E0Y5_CUCME	4.6e-05	55.68	probable serine/threonine-protein kinase kinX OS=Cucumis melo OX=3656 GN=LOC1034...	[more]

BLAST of Bhi01G001241 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016901902.1	7.0e-05	55.68	PREDICTED: probable serine/threonine-protein kinase kinX [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051641	cellular localization
biological_process	GO:0008150	biological_process
biological_process	GO:0016310	phosphorylation
cellular_component	GO:0043232	intracellular non-membrane-bounded organelle
cellular_component	GO:0044446	intracellular organelle part
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0016301	kinase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi01M001241	Bhi01M001241	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 176..192
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 176..214

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Bhi01G001241	Csa3G210480	Cucumber (Chinese Long) v2	cuwgoB283
Bhi01G001241	ClCG05G009850	Watermelon (Charleston Gray)	wcgwgoB427
Bhi01G001241	CSPI03G18690	Wild cucumber (PI 183967)	cpiwgoB283
Bhi01G001241	Lsi05G001990	Bottle gourd (USVL1VR-Ls)	lsiwgoB431
Bhi01G001241	CsGy3G018530	Cucumber (Gy14) v2	cgybwgoB271
Bhi01G001241	CsaV3_3G018740	Cucumber (Chinese Long) v3	cucwgoB287
Bhi01G001241	Cla013053	Watermelon (97103) v1	wgowmB202
Bhi01G001241	Cla97C05G092240	Watermelon (97103) v2	wgowmbB179

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi01G001241	Cucurbita maxima (Rimu)	cmawgoB0438
Bhi01G001241	Cucurbita maxima (Rimu)	cmawgoB0852
Bhi01G001241	Cucurbita moschata (Rifu)	cmowgoB0434
Bhi01G001241	Cucurbita moschata (Rifu)	cmowgoB0849
Bhi01G001241	Cucurbita pepo (Zucchini)	cpewgoB0295
Bhi01G001241	Cucurbita pepo (Zucchini)	cpewgoB0516
Bhi01G001241	Cucurbita pepo (Zucchini)	cpewgoB0517
Bhi01G001241	Melon (DHL92) v3.6.1	medwgoB531
Bhi01G001241	Melon (DHL92) v3.5.1	mewgoB530
Bhi01G001241	Silver-seed gourd	carwgoB0458
Bhi01G001241	Silver-seed gourd	carwgoB0459
Bhi01G001241	Silver-seed gourd	carwgoB0771