Bhi01M001241 (mRNA) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi01M001241
Type	mRNA
Organism	Benincasa hispida (Wax gourd)
Description	Unknown protein
Location	chr1 : 34526510 .. 34527594 (+)
Sequence length	994

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTTTCATCATCCTCAGCCTTCAACTTGCTTTTTCTTTTCATTTCTCTTCTCCAAATCCCTTCTGATTCCTTTTAACAAGAAGAGAAAGAAGTACTTTGGTCTTCTTTCTCTCAACCCCATTGTCTTCTCTCTTTTTTAAGTTAAAACCTTTTCTTCTCTCCCAAATCTTTAACATGGGTGGTTGTGCTAGCAAGCCCAAGACCACCACTGAGAAAGAAGTCACCCCCTTGCCCGTCCCCGTCGTTAAAGTGTCGAAGGAGACGACAATGGCGATACCGAGTATCAAGGAGAAGGAAGTCGAGGTCGAAACTGAAGAGAAAAAGAGTGATGATCAAGTTGATGTGAAGAAGGTTGATCAAGGTGAAAAGAAGGTTGAGGAGGAGGATAACCAACCGCTCTCTCTCGGATGTTTGCTCATTCAGGTTCTTTCTTAAAACTTTCTCAGAAAATAGTTAGTGCGTCAAAAAACTTAGCGTTAACCTTTTTTTTTATTATTATTTTTTTTATTTTTAGGACAAACAAGAAGTGGAAATTCCACCAGAGCCCAAAAAAGAGGAGCCCAAAGAGGAAGTCAAGGATGAGGCAGCGAAACCAACAGAAGCAGCTCCAGCAGCGGTGCCGGAACCTCAAAAATCCATTGTCGAGGCAGCGGTGCCGGAGCCCCAGAAAGCCACTGCCGAGGTAGCAGCGCCTGAACCCCAAAAAGCCACCGTCGTCGAGGCAGAGCCTAAGAAAGCCGCCGTCGAGCCAGCTGCGGCTGTACCCGAGAAACCCATCGTCGAGGCGGCGGTAGAACCCAAAAAAGCCACCGAAGAGGAGAAGAAAACCGCCGTGGAGGCACCTAAAACAGTTGAAACCAACGTTGAGGCACCATCACCGGCAGTAGCAGTGGCAACAGAGAAGCAATGATTAATGTTTTTTTTTTGGAAAGAAAGACGTTGCATAAATCTGAGGGAAATTTCTAGACAGAAGATTTGATACAAAATGGAATTCGTTGCATTTGGAACATTTAATTTCTCTTTATCATTCAGAAATTGCTCATAATTTGATTCTTCCCATTGAAAATGTAAACTAGAATTCGAG

mRNA sequence

AATTTTCATCATCCTCAGCCTTCAACTTGCTTTTTCTTTTCATTTCTCTTCTCCAAATCCCTTCTGATTCCTTTTAACAAGAAGAGAAAGAAGTACTTTGGTCTTCTTTCTCTCAACCCCATTGTCTTCTCTCTTTTTTAAGTTAAAACCTTTTCTTCTCTCCCAAATCTTTAACATGGGTGGTTGTGCTAGCAAGCCCAAGACCACCACTGAGAAAGAAGTCACCCCCTTGCCCGTCCCCGTCGTTAAAGTGTCGAAGGAGACGACAATGGCGATACCGAGTATCAAGGAGAAGGAAGTCGAGGTCGAAACTGAAGAGAAAAAGAGTGATGATCAAGTTGATGTGAAGAAGGTTGATCAAGGTGAAAAGAAGGTTGAGGAGGAGGATAACCAACCGCTCTCTCTCGGATGTTTGCTCATTCAGGACAAACAAGAAGTGGAAATTCCACCAGAGCCCAAAAAAGAGGAGCCCAAAGAGGAAGTCAAGGATGAGGCAGCGAAACCAACAGAAGCAGCTCCAGCAGCGGTGCCGGAACCTCAAAAATCCATTGTCGAGGCAGCGGTGCCGGAGCCCCAGAAAGCCACTGCCGAGGTAGCAGCGCCTGAACCCCAAAAAGCCACCGTCGTCGAGGCAGAGCCTAAGAAAGCCGCCGTCGAGCCAGCTGCGGCTGTACCCGAGAAACCCATCGTCGAGGCGGCGGTAGAACCCAAAAAAGCCACCGAAGAGGAGAAGAAAACCGCCGTGGAGGCACCTAAAACAGTTGAAACCAACGTTGAGGCACCATCACCGGCAGTAGCAGTGGCAACAGAGAAGCAATGATTAATGTTTTTTTTTTGGAAAGAAAGACGTTGCATAAATCTGAGGGAAATTTCTAGACAGAAGATTTGATACAAAATGGAATTCGTTGCATTTGGAACATTTAATTTCTCTTTATCATTCAGAAATTGCTCATAATTTGATTCTTCCCATTGAAAATGTAAACTAGAATTCGAG

Coding sequence (CDS)

ATGGGTGGTTGTGCTAGCAAGCCCAAGACCACCACTGAGAAAGAAGTCACCCCCTTGCCCGTCCCCGTCGTTAAAGTGTCGAAGGAGACGACAATGGCGATACCGAGTATCAAGGAGAAGGAAGTCGAGGTCGAAACTGAAGAGAAAAAGAGTGATGATCAAGTTGATGTGAAGAAGGTTGATCAAGGTGAAAAGAAGGTTGAGGAGGAGGATAACCAACCGCTCTCTCTCGGATGTTTGCTCATTCAGGACAAACAAGAAGTGGAAATTCCACCAGAGCCCAAAAAAGAGGAGCCCAAAGAGGAAGTCAAGGATGAGGCAGCGAAACCAACAGAAGCAGCTCCAGCAGCGGTGCCGGAACCTCAAAAATCCATTGTCGAGGCAGCGGTGCCGGAGCCCCAGAAAGCCACTGCCGAGGTAGCAGCGCCTGAACCCCAAAAAGCCACCGTCGTCGAGGCAGAGCCTAAGAAAGCCGCCGTCGAGCCAGCTGCGGCTGTACCCGAGAAACCCATCGTCGAGGCGGCGGTAGAACCCAAAAAAGCCACCGAAGAGGAGAAGAAAACCGCCGTGGAGGCACCTAAAACAGTTGAAACCAACGTTGAGGCACCATCACCGGCAGTAGCAGTGGCAACAGAGAAGCAATGA

Protein sequence

MGGCASKPKTTTEKEVTPLPVPVVKVSKETTMAIPSIKEKEVEVETEEKKSDDQVDVKKVDQGEKKVEEEDNQPLSLGCLLIQDKQEVEIPPEPKKEEPKEEVKDEAAKPTEAAPAAVPEPQKSIVEAAVPEPQKATAEVAAPEPQKATVVEAEPKKAAVEPAAAVPEKPIVEAAVEPKKATEEEKKTAVEAPKTVETNVEAPSPAVAVATEKQ

Homology

[Close]

BLAST of Bhi01M001241 vs. TrEMBL
Match: tr|A0A1S4E0Y5|A0A1S4E0Y5_CUCME (probable serine/threonine-protein kinase kinX OS=Cucumis melo OX=3656 GN=LOC103496142 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 4.6e-05
Identity = 49/88 (55.68%), Postives = 54/88 (61.36%), Query Frame = 0


Query: 59  KVDQGEKKVE---------------EEDNQPLSLGCLLIQDKQEVEIPPEPKKXXXXXXX 118
           KV+ GEK+ +               EED QPLSLGCLLIQDK+EVEIP E KK XXXXXX
Sbjct: 34  KVENGEKESDDXXXXXXXXXXXXXXEEDTQPLSLGCLLIQDKKEVEIPTETKKEXXXXXX 93

Query: 119 XXXXXXXXEAAPAAVP-------EPQKS 125
           XXXX    EAAP A P       EPQK+
Sbjct: 94  XXXXAKPIEAAPEATPIVALTTAEPQKA 121

[Close]

BLAST of Bhi01M001241 vs. NCBI nr
Match: XP_016901902.1 (PREDICTED: probable serine/threonine-protein kinase kinX [Cucumis melo])

HSP 1 Score: 57.4 bits (137), Expect = 7.0e-05
Identity = 49/88 (55.68%), Postives = 54/88 (61.36%), Query Frame = 0


Query: 59  KVDQGEKKVE---------------EEDNQPLSLGCLLIQDKQEVEIPPEPKKXXXXXXX 118
           KV+ GEK+ +               EED QPLSLGCLLIQDK+EVEIP E KK XXXXXX
Sbjct: 34  KVENGEKESDDXXXXXXXXXXXXXXEEDTQPLSLGCLLIQDKKEVEIPTETKKEXXXXXX 93

Query: 119 XXXXXXXXEAAPAAVP-------EPQKS 125
           XXXX    EAAP A P       EPQK+
Sbjct: 94  XXXXAKPIEAAPEATPIVALTTAEPQKA 121

The following BLAST results are available for this feature:

BLAST of Bhi01M001241 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi01M001241 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi01M001241 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4E0Y5\|A0A1S4E0Y5_CUCME	4.6e-05	55.68	probable serine/threonine-protein kinase kinX OS=Cucumis melo OX=3656 GN=LOC1034...	[more]

BLAST of Bhi01M001241 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016901902.1	7.0e-05	55.68	PREDICTED: probable serine/threonine-protein kinase kinX [Cucumis melo]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Bhi01G001241	Bhi01G001241	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi01M001241.utr5p1	Bhi01M001241.utr5p1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi01M001241.exon1	Bhi01M001241.exon1	exon
Bhi01M001241.exon2	Bhi01M001241.exon2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Bhi01M001241	cds.Bhi01M001241	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi01M001241.utr3p1	Bhi01M001241.utr3p1	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Bhi01M001241	Bhi01M001241-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 176..192
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 176..214