CsaV3_3G018740.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G018740.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 14449561 .. 14451492 (-)
Sequence length1266
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGAGAAAGAAGTACTTTTTGGTCTTCTTTCTCTTATAAACCCATTCTCTTAACCTGCCTATTTAATTAAAACTCTAATTTCTTCCTTAAATTCTTTTAACATGGGTGGTTGTGCTAGCAAGCCAAAGACTAGCATTGAGAAAGAAGTCACCCCTTTGCCTGTTGAAGAGTCAAAGAAGGAGACGACCATCATGGCCGTACTCAAGGAAGCGAAGCACGAAAATGGATCAGAAAAAGAAAGCGATGATCAAGTTAAGGAGAAGAAGATTGATGTGAGAGAAAAGAAGGTTGAGGAGGATATCCAACCCCTCTCTCTTGGATGTTTGCTCATTCAGGTTCCTTTCTTAAAACTTAACTTCCTATTTCATTTCGCTCTTCAAACGAGCTTGTCTATACATAAAATCCATTCTTCTTACCACCTAATCATTTTCTCATTCACTTCTTCTTTTTTAAATGAAAACTTTCATTTTTCTTAATCAGATTATTTACTCTTTTTTTTTTTTTTTCTAAATTTTAGGACAAAAAAGAAGTAGAAATTCCAACTGAAACCAAAAAAGAAGAACCCAAAGAAGTAAAGGTTGAGGCAGCGAAACCAAAAGAAGCAGCACCGAAAGCTGCCATCGTTGCACCGACGACGGCTGAACCCCAAAAACTCACCGCCATTGTAGATGCAGCTGAACCTCAAAAAGCAACCGCCGTTGTGCAAGCAGCCGAACCCCAAAAACCCACCGCCGTTGTAGCAGCAGCTGAACCCCAAAAAGTAACCGCCGTTGTAGCAGCAGCCGAACCACAAAAACCCACCCCCGTTGTAGCAGCAGCCGAACCACAAAAACCCACCCCCGTTGTAGCAGCAGCCGAACCACAAAATGCCACCCCCGCTGTAGCAGCAGCCGGACCACAAAAAGCCACTCCCTTTGTAGCAGCAGCCGAACCACAAAAAGCCACCCCCGTTGTAGCAGCAGCCGAACCACAAAAAGCCACCCCCGTTGTAGCAGCAGCAGCCGAACCACAAAAAGCCACCCCCGTTGTAGCAGCAGCTGAACCACAAAAAGCCACCCCCGTTGTAGCAGCAGCTGAACCACAAAAAGCCACCCCCGTTGTAGCAGCAGCTGAACCACAAAAAGCCACTGCCGTTGTAGCAGCAGCTGAACCCCAAAAAGCCACCGCCGTTGTAGCAGCAGCTGAACCCCAAAAAGCCACCGCCGTTGTAGCAGCAGCTGAACCCCAAAAAGCGACCGCCGTTGTAGCAGCAGCTGAACCCCAAAAAGCGACCGCCGTTGTAACAGCAGCTGAACCCCAAAAAGCGACCGCCGTTGTAGCAGCAGCTGAACCCCAAAAAGCTACCGCCGTTGTAGCAGCAGCTGAACCCCAAAAAGCCACCCCCGTTGTAGCAGCAGCTGAACCACAAAAAGCCACCCCCGTTGTAGAAGCAGCAGAACCCAAAAAAGCCACCGAAGGGGAGAAAACCGGCGTGGAGGTAGAGTCATTGGTGGAGAAGATAGCAAAGATTGAGGCAGCATCTGTGGCGGTGACAACAAAAACGCAATGATTGTTAAATTGAGGGAAACTAGAGAGAGGCAGAAGATTTAAAGTAAAAGAACAAAATGGATTTCGTTGTATTTGGAACAAAATATTTAATTTCTTTACCAATATTCATTAAGAAAATTGCTCATAATTTGGTTCTTCTTTCATTGAAAATGTATAATAGAATTTGAAAAATAATGAAAAAAAAAAAAAATTCTTGTTTGAGTTTGTTCCATTTACCTGACCTTTCATTATCAAATTTCTTTCAAAATTGGTTAATGTTTTGTTGGTCGTTTTATTGGAAGGTTTTGAGTTTGCTAAAAAGAATTGTATTCGAAAAGAGATAGTAATGTGGTTGATTCAATTCCAATTTTTTAATCCTACAACATCATATTCATGTATGTTCCAC

mRNA sequence

ATGGGTGGTTGTGCTAGCAAGCCAAAGACTAGCATTGAGAAAGAAGTCACCCCTTTGCCTGTTGAAGAGTCAAAGAAGGAGACGACCATCATGGCCGTACTCAAGGAAGCGAAGCACGAAAATGGATCAGAAAAAGAAAGCGATGATCAAGTTAAGGAGAAGAAGATTGATGTGAGAGAAAAGAAGGTTGAGGAGGATATCCAACCCCTCTCTCTTGGATGTTTGCTCATTCAGGACAAAAAAGAAGTAGAAATTCCAACTGAAACCAAAAAAGAAGAACCCAAAGAAGTAAAGGTTGAGGCAGCGAAACCAAAAGAAGCAGCACCGAAAGCTGCCATCGTTGCACCGACGACGGCTGAACCCCAAAAACTCACCGCCATTGTAGATGCAGCTGAACCTCAAAAAGCAACCGCCGTTGTGCAAGCAGCCGAACCCCAAAAACCCACCGCCGTTGTAGCAGCAGCTGAACCCCAAAAAGTAACCGCCGTTGTAGCAGCAGCCGAACCACAAAAACCCACCCCCGTTGTAGCAGCAGCCGAACCACAAAAACCCACCCCCGTTGTAGCAGCAGCCGAACCACAAAATGCCACCCCCGCTGTAGCAGCAGCCGGACCACAAAAAGCCACTCCCTTTGTAGCAGCAGCCGAACCACAAAAAGCCACCCCCGTTGTAGCAGCAGCCGAACCACAAAAAGCCACCCCCGTTGTAGCAGCAGCAGCCGAACCACAAAAAGCCACCCCCGTTGTAGCAGCAGCTGAACCACAAAAAGCCACCCCCGTTGTAGCAGCAGCTGAACCACAAAAAGCCACCCCCGTTGTAGCAGCAGCTGAACCACAAAAAGCCACTGCCGTTGTAGCAGCAGCTGAACCCCAAAAAGCCACCGCCGTTGTAGCAGCAGCTGAACCCCAAAAAGCCACCGCCGTTGTAGCAGCAGCTGAACCCCAAAAAGCGACCGCCGTTGTAGCAGCAGCTGAACCCCAAAAAGCGACCGCCGTTGTAACAGCAGCTGAACCCCAAAAAGCGACCGCCGTTGTAGCAGCAGCTGAACCCCAAAAAGCTACCGCCGTTGTAGCAGCAGCTGAACCCCAAAAAGCCACCCCCGTTGTAGCAGCAGCTGAACCACAAAAAGCCACCCCCGTTGTAGAAGCAGCAGAACCCAAAAAAGCCACCGAAGGGGAGAAAACCGGCGTGGAGGTAGAGTCATTGGTGGAGAAGATAGCAAAGATTGAGGCAGCATCTGTGGCGGTGACAACAAAAACGCAATGA

Coding sequence (CDS)

ATGGGTGGTTGTGCTAGCAAGCCAAAGACTAGCATTGAGAAAGAAGTCACCCCTTTGCCTGTTGAAGAGTCAAAGAAGGAGACGACCATCATGGCCGTACTCAAGGAAGCGAAGCACGAAAATGGATCAGAAAAAGAAAGCGATGATCAAGTTAAGGAGAAGAAGATTGATGTGAGAGAAAAGAAGGTTGAGGAGGATATCCAACCCCTCTCTCTTGGATGTTTGCTCATTCAGGACAAAAAAGAAGTAGAAATTCCAACTGAAACCAAAAAAGAAGAACCCAAAGAAGTAAAGGTTGAGGCAGCGAAACCAAAAGAAGCAGCACCGAAAGCTGCCATCGTTGCACCGACGACGGCTGAACCCCAAAAACTCACCGCCATTGTAGATGCAGCTGAACCTCAAAAAGCAACCGCCGTTGTGCAAGCAGCCGAACCCCAAAAACCCACCGCCGTTGTAGCAGCAGCTGAACCCCAAAAAGTAACCGCCGTTGTAGCAGCAGCCGAACCACAAAAACCCACCCCCGTTGTAGCAGCAGCCGAACCACAAAAACCCACCCCCGTTGTAGCAGCAGCCGAACCACAAAATGCCACCCCCGCTGTAGCAGCAGCCGGACCACAAAAAGCCACTCCCTTTGTAGCAGCAGCCGAACCACAAAAAGCCACCCCCGTTGTAGCAGCAGCCGAACCACAAAAAGCCACCCCCGTTGTAGCAGCAGCAGCCGAACCACAAAAAGCCACCCCCGTTGTAGCAGCAGCTGAACCACAAAAAGCCACCCCCGTTGTAGCAGCAGCTGAACCACAAAAAGCCACCCCCGTTGTAGCAGCAGCTGAACCACAAAAAGCCACTGCCGTTGTAGCAGCAGCTGAACCCCAAAAAGCCACCGCCGTTGTAGCAGCAGCTGAACCCCAAAAAGCCACCGCCGTTGTAGCAGCAGCTGAACCCCAAAAAGCGACCGCCGTTGTAGCAGCAGCTGAACCCCAAAAAGCGACCGCCGTTGTAACAGCAGCTGAACCCCAAAAAGCGACCGCCGTTGTAGCAGCAGCTGAACCCCAAAAAGCTACCGCCGTTGTAGCAGCAGCTGAACCCCAAAAAGCCACCCCCGTTGTAGCAGCAGCTGAACCACAAAAAGCCACCCCCGTTGTAGAAGCAGCAGAACCCAAAAAAGCCACCGAAGGGGAGAAAACCGGCGTGGAGGTAGAGTCATTGGTGGAGAAGATAGCAAAGATTGAGGCAGCATCTGTGGCGGTGACAACAAAAACGCAATGA

Protein sequence

MGGCASKPKTSIEKEVTPLPVEESKKETTIMAVLKEAKHENGSEKESDDQVKEKKIDVREKKVEEDIQPLSLGCLLIQDKKEVEIPTETKKEEPKEVKVEAAKPKEAAPKAAIVAPTTAEPQKLTAIVDAAEPQKATAVVQAAEPQKPTAVVAAAEPQKVTAVVAAAEPQKPTPVVAAAEPQKPTPVVAAAEPQNATPAVAAAGPQKATPFVAAAEPQKATPVVAAAEPQKATPVVAAAAEPQKATPVVAAAEPQKATPVVAAAEPQKATPVVAAAEPQKATAVVAAAEPQKATAVVAAAEPQKATAVVAAAEPQKATAVVAAAEPQKATAVVTAAEPQKATAVVAAAEPQKATAVVAAAEPQKATPVVAAAEPQKATPVVEAAEPKKATEGEKTGVEVESLVEKIAKIEAASVAVTTKTQ
Homology
[Close]
BLAST of CsaV3_3G018740.1 vs. NCBI nr
Match: KGN57553.1 (hypothetical protein Csa_3G210480 [Cucumis sativus])

HSP 1 Score: 151.8 bits (382), Expect = 5.4e-33
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0 

Query: 1  MGGCASKPKTSIEKEVTPLPVEESKKETTIMAVLKEAKHENGSEKESDDQVXXXXXXXXX 60
          MGGCASKPKTSIEKEVTPLPVEESKKETTIMAVLKEAKHENGSEKESDDQVXXXXXXXXX
Sbjct: 1  MGGCASKPKTSIEKEVTPLPVEESKKETTIMAVLKEAKHENGSEKESDDQVXXXXXXXXX 60

Query: 61 XXXEEDIQPLSLGCLLIQDKKEVEIPTETKKEE 94
          XXXEEDIQPLSLGCLLIQDKKEVEIPTETKKEE
Sbjct: 61 XXXEEDIQPLSLGCLLIQDKKEVEIPTETKKEE 93


HSP 2 Score: 55.5 bits (132), Expect = 5.2e-04
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 392 GEKTGVEVESLVEKIAKIEAASVAVTTKTQ 422
           GEKTGVEVESLVEKIAKIEAASVAVTTKTQ
Sbjct: 233 GEKTGVEVESLVEKIAKIEAASVAVTTKTQ 262

[Close]
BLAST of CsaV3_3G018740.1 vs. NCBI nr
Match: XP_011651254.1 (PREDICTED: histone H1-II-like [Cucumis sativus])

HSP 1 Score: 151.8 bits (382), Expect = 5.4e-33
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0 

Query: 1  MGGCASKPKTSIEKEVTPLPVEESKKETTIMAVLKEAKHENGSEKESDDQVXXXXXXXXX 60
          MGGCASKPKTSIEKEVTPLPVEESKKETTIMAVLKEAKHENGSEKESDDQVXXXXXXXXX
Sbjct: 1  MGGCASKPKTSIEKEVTPLPVEESKKETTIMAVLKEAKHENGSEKESDDQVXXXXXXXXX 60

Query: 61 XXXEEDIQPLSLGCLLIQDKKEVEIPTETKKEE 94
          XXXEEDIQPLSLGCLLIQDKKEVEIPTETKKEE
Sbjct: 61 XXXEEDIQPLSLGCLLIQDKKEVEIPTETKKEE 93

[Close]
BLAST of CsaV3_3G018740.1 vs. NCBI nr
Match: XP_016901902.1 (PREDICTED: probable serine/threonine-protein kinase kinX [Cucumis melo])

HSP 1 Score: 114.4 bits (285), Expect = 9.5e-22
Identity = 80/92 (86.96%), Postives = 80/92 (86.96%), Query Frame = 0 

Query: 1  MGGCASKPKTSIEKEVTPLPVEESKKETTIMAVLKEAKHENGSEKESDDQVXXXXXXXXX 60
          MGGCASKPKT IEKEVTPLPVEESKKE     V KEAK ENG EKESDD  XXXXXXXXX
Sbjct: 1  MGGCASKPKTGIEKEVTPLPVEESKKE----VVPKEAKVENG-EKESDDXXXXXXXXXXX 60

Query: 61 XXXEEDIQPLSLGCLLIQDKKEVEIPTETKKE 93
          XXXEED QPLSLGCLLIQDKKEVEIPTETKKE
Sbjct: 61 XXXEEDTQPLSLGCLLIQDKKEVEIPTETKKE 87

[Close]
BLAST of CsaV3_3G018740.1 vs. TrEMBL
Match: tr|A0A0A0L739|A0A0A0L739_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G210480 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 3.5e-33
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0 

Query: 1  MGGCASKPKTSIEKEVTPLPVEESKKETTIMAVLKEAKHENGSEKESDDQVXXXXXXXXX 60
          MGGCASKPKTSIEKEVTPLPVEESKKETTIMAVLKEAKHENGSEKESDDQVXXXXXXXXX
Sbjct: 1  MGGCASKPKTSIEKEVTPLPVEESKKETTIMAVLKEAKHENGSEKESDDQVXXXXXXXXX 60

Query: 61 XXXEEDIQPLSLGCLLIQDKKEVEIPTETKKEE 94
          XXXEEDIQPLSLGCLLIQDKKEVEIPTETKKEE
Sbjct: 61 XXXEEDIQPLSLGCLLIQDKKEVEIPTETKKEE 93


HSP 2 Score: 55.5 bits (132), Expect = 3.5e-04
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 392 GEKTGVEVESLVEKIAKIEAASVAVTTKTQ 422
           GEKTGVEVESLVEKIAKIEAASVAVTTKTQ
Sbjct: 233 GEKTGVEVESLVEKIAKIEAASVAVTTKTQ 262

[Close]
BLAST of CsaV3_3G018740.1 vs. TrEMBL
Match: tr|A0A1S4E0Y5|A0A1S4E0Y5_CUCME (probable serine/threonine-protein kinase kinX OS=Cucumis melo OX=3656 GN=LOC103496142 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 6.3e-22
Identity = 80/92 (86.96%), Postives = 80/92 (86.96%), Query Frame = 0 

Query: 1  MGGCASKPKTSIEKEVTPLPVEESKKETTIMAVLKEAKHENGSEKESDDQVXXXXXXXXX 60
          MGGCASKPKT IEKEVTPLPVEESKKE     V KEAK ENG EKESDD  XXXXXXXXX
Sbjct: 1  MGGCASKPKTGIEKEVTPLPVEESKKE----VVPKEAKVENG-EKESDDXXXXXXXXXXX 60

Query: 61 XXXEEDIQPLSLGCLLIQDKKEVEIPTETKKE 93
          XXXEED QPLSLGCLLIQDKKEVEIPTETKKE
Sbjct: 61 XXXEEDTQPLSLGCLLIQDKKEVEIPTETKKE 87

The following BLAST results are available for this feature:
BLAST of CsaV3_3G018740.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57553.15.4e-33100.00hypothetical protein Csa_3G210480 [Cucumis sativus][more]
XP_011651254.15.4e-33100.00PREDICTED: histone H1-II-like [Cucumis sativus][more]
XP_016901902.19.5e-2286.96PREDICTED: probable serine/threonine-protein kinase kinX [Cucumis melo][more]
BLAST of CsaV3_3G018740.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G018740.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G018740.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L739|A0A0A0L739_CUCSA3.5e-33100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G210480 PE=4 SV=1[more]
tr|A0A1S4E0Y5|A0A1S4E0Y5_CUCME6.3e-2286.96probable serine/threonine-protein kinase kinX OS=Cucumis melo OX=3656 GN=LOC1034... [more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_3G018740CsaV3_3G018740gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_3G018740.1.cds2CsaV3_3G018740.1.cds2CDS
CsaV3_3G018740.1.cds1CsaV3_3G018740.1.cds1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_3G018740.1.exon2CsaV3_3G018740.1.exon2exon
CsaV3_3G018740.1.exon1CsaV3_3G018740.1.exon1exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_3G018740.1CsaV3_3G018740.1-proteinpolypeptide


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 367..397
NoneNo IPR availablePANTHERPTHR31002:SF20CELL WALL PROTEIN DAN4coord: 118..230
NoneNo IPR availablePANTHERPTHR31002SERIPAUPERINcoord: 236..391
NoneNo IPR availablePANTHERPTHR31002:SF20CELL WALL PROTEIN DAN4coord: 236..391
NoneNo IPR availablePANTHERPTHR31002SERIPAUPERINcoord: 118..230