CsaV3_3G015540 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_3G015540
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	50S ribosomal protein l3
Location	chr3 : 11579753 .. 11584456 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTAATTTTGAATACCATCGATTTTGCTTTCTTAGAACCCTAAACCCCTAAGGTGCATCCTGCTGCCGCTCCATCACACTGCATCAGTTGCATAACACAAGAGAGGAAGACAATGAAATTCCACAGTCTCGGAGATCGAGATCAACCCTAAAATTTGAACCAAACCCTTCTTCTTCCTATCTGATTTTTACCAACTTAGTATCATAATCGTTGTGATCGGTTCTCACCATGTCAGCTTTATCTAGAGGTCTCATTTCTCGTTTTCGTCTTCTCTCGATCAATTCAAGCGCTTCTCATTCAATTACTACTTCTTCTTCTTCTTCTTCTTCAAGGACAAATGCGTCCTGTTACTACTTCTTCCGTGCTTTCAGTACCCAGGATTTGACTCAGGCTAGCGATGGGTCTTTGTCAGCTTCTTCGATTTTTGAAGCTAAACCTGGTACTATGGGAAGTAACTCTACGCGGACGGGTGTTATTGCCGTCAAGTGTGGAATGTCGGCGTTGTGGGATAAATGGGGAGCTAGGATACCCATCACTGTGCTCTGGGTTGATGATAATATTGTGTCTCAGGTCAAGACCATTGAGAAAGAAGGTATCACAGCTCTACAGGTACTGTTCAAATCTCTTATTCTCATTCTCATTCCTACTGTGTTGTGTTTATTATTATTATTTGATGCTTTTGATACTTAGCTGAAATTAAGAGCATGACTGAAACCTAGAAAACCAACTTCGTTGGCCTTGGCATTGCTAGTTTCTATCACAGTCGTAGAACCAAAGAAAGCAGAAATGAAATGAGACTTTGGCTTAATGATGTTACGGACGCTACTTCGGCATAATGGATTTGAGTCCTTGTCTATAGTTAGTTAGGGTCGAGCTCTCTTTTCTTATTGAGCCTTTTTTTTTGCTCTTGTATATTTTTTCATTTCTCTCAACGAAAATGTGTTTGTATTTATATTATTCTACTGTGTAAGAGGGATTTAAAACTGTCGTTCTGGCAATTCCATGGATTTTATTATTGTACTGAACTGAATTGCAAATTGTTGTTTTGGACCTGAATTTCACCATCTCATATCATGTCATCACTTCCATCCATACACTTAGCTAGAAATAAACATTCGTAGCTTTTTTAATTCCATATGTTTGAGGTTTTTTTTTTATTCAGTTCATATGTATTTTGTTGCCTACGACTTGAGTTTATTGACCAAAGGTTCTATGGTATGGTGCTAGTTAGATTGGCTGTGGACAGAAGAAGGAAAAGCATTTGAGTAAACCTGAATTAGGCCATTTTAGGGCTCAAGGTGTTCCATTGAAGAGGAAGCTGAGGGAGTTCCCAGTGTCACAAGATGCACTTCTTCCAGTTGGTACAGAAATTGGCGTTCGCCATTTTGTTCCTGGACAGTATGTCGATGTGACAGGAATAAGTAGAGGGAAAGGTTTTCAGGTGAATCCATTGCACCATTGCACCATTACTCCATTCGTTTTTTAACTGACAACCTTTGTTCCTTTTTCTTTTCATTCAATTCCTTATATTTTCTATTATGGTTAAGTCAGTAACATGTCAAAATTACTTAAACAGTTAAATGTTATTGTGGGAACATTGATTCATATAAATGCAGGTCTCTCTCTGAATTTAGGTCAAAGTACCATTTAAAAGCTGCTTAATCATCAATGACAATTGAATGAGCAGAACTATGAAATTGAACTTCAACAAGTGATAGCTGTAAACTAGCGGCGAGTTATAATAAACTTTGTTGGTTCCCTTTCTCTTTCTTCCTTGGCACTGACGTTTCTAGTCGATCATGCTCATCAACATTATTCTGTATGCACTGATATTTCTTCCAGTGATTCTCAAGAACATGAACTATTGGCCTTTTCATCAAGCATTACTGATGATTCAAAACTTGTTATGTTTAACTACCCAAAACTTTCTTTGATGTCCAACTTACAACTCAAACTTTAACTTATAGAGCAAGTCAAATCCAATTAAAGTATCAAGTTACACCAAATGAACATATAGATGTAAGAGACCTTATCTAGCAAATAAAAAACTATTAATTGACAAAGAATGCTAAAACCACAACAGTAAATATCTTTAGCTCAAATCCCAAGTGAACAACCTCATGGTGTTCCACTCTGCTAATAACTGAACTCCAAAATCTAAAATGAGAGTTTTAGCAGAAACAACTATCGGACAAGTTATGCATGCTTGTTTGTCATTATCAGCTTACAAATTGTATCATTGCAATCCGTACTTTGGGTTGTGAGCATTATAATAGATTTAGTAAGCAGTAAGCAAATATTTACATGAGAGTGACACACAATGACCCAAATATTGATATTTTATCATGATTTAACCTAGTTTTAGTCATGCTTGAACTTGCTCATTGGCTTGCATTCTTAATTACCTGACTTGCTGCATGATCTGCAAGATACAAATTAACCATCAAAGTTACAGGGAGATGTATGTGTGTGTTATCATACGATAACATGACAATTTTTCAATGAGGTCATGTACCTCCTGGAGACAAATAATAAAAAAACGCAATTATATATAACATATATATAAATTGAGGAGCTAACCCCGTTGAAAGATGTATGTAGCTGATCATTTATGTGATCATTGCTTTGTCTTCTTTCATGTTAGTGTGCTTGTTTGGGTAATTTCGAGCTGTATATCTGTGTCCTGAAAATTCTTCACGAGATCCAGAATTATTATAACGAAATTGTTTTCTTTCTTACCTTTTGTAAATGGTATAAAATCTTTTCCATGAAAGTGATGCCTCTCATTGCTAATCCTTTCTCTAATTGTGCTCAGGGAGTGATGAAAAGGCATGGTTTCAAAGGAATGCCAGCATCCCACGGAGCATCATTATCTCATAGGAGCGGAGGTTCTACGGGTCAGAGGGATGCTCCTGGAAAGGTGAGTTTATGTTTCCATGGTGGTATTCATTTTTAAGATTGAGTGATGTTTTGGGTCTTAATAGCTTCCTGAAACTCACATGTTAGTCAAGTAGTTGTAGTTGTACATACTGGTAGCCTACTAGGTTGCCTCTGATTCTCGGAGTTTTGCTGCTTTTCTAATATTCATGCTATGTCTTTTGATTTCTGTCAATTTGCAAGGGTTCCAAATGAATGGCAATTTCATAGAAGAGAAATAAGAATTGGCTGGAAGCATATGGTTACAGAATAAATGACTAACTTGCATGGTGAAAGTCTATTTGCATAATTCTTCCTTGGATGGTTTACGGATTTAGCTCTGCTTGTGGAATGAATTACTGTCGAGCAACATGTGGCAGTTTTCACGGGTTACAATCTTGAAAATAATATTCTTTTTGTTGTTGCCTTGTTTCTGGTGAAGCTTTAATGTTAATGAAGTTTGAAAAAACTTGCACTCTTGAATCCTCTTTCACATACCTACCTTATCTTCTTCAGTTCCGTGATTCAATAGAACATACTTGAGTTTTGTTTGATTTTCTTTGCATATATAACCATGGAAACCTGTGTTGAATTTTAGAAGCTTGTTCCTGTTTCTAGATACAGAGAAAAGAAAATCCAAAAGTGTGGAATAACTATTTATGATCTGTTTAAAGAAAGTTCTAGTCTGTTTTCACTGTATTCCATGTGATTTATGATGGTGAAAAACACCTGGTTATTTTACAGGTTTTCAAAGGCAGAAAGATGGCTGGGCGTATGGGTGGAAAGCAGAGAACTGTTAAAAATGTGTGGATATACAAAATTGACCCTGCAAGGAATTTGATGTGGGTGAAAGGACCAGTAAGTTTCTTCTAAAAACCGAATTTAAACTCTTGATGTGATCCCCTCTAGAGTCTTTGTCATGTACATAAATATCTTACTCTTGGGACATCATGGTCTGATGTTTTTGTTGTGCACAACTCCACCTCTATTTAGATCCCCGGTGCCGAAGGAAACTTTGTATTTATAAAAGACGCCGTGTACAAGAAACTCAATAAGTCGGCAATCCTTCCATTTCCTACGTACTTCGCAACTGATGGTGAGGACACAGACAAGTTGGAACCTCTTGTTGCTGATCTTGGAGAAGTAGATCCATTTATGACTGGAGATTGATTAGGAGTTGGCCTTCAGCGCAAGTTGTGCACTTTGCTCTGCTTTTTCCTTTTATTGATGGTGTTTGCAGGTATGCTTATTGACCCCAACCCTTACGGGTAGTCAATTTCATTATAAAACTGCAGTCGGAGGATCTCTACGAGGTGATCGAATCTTCTAATCCGATGGTATTCTTCTACAGTTATATTTTTCTTTTCAAAAATTTTCTCACCATCTCAAACCTGTACCGGAAAAGACCATTTTGAAATAAAAAGAGTAGAGAGAAGAAAAAAAAGCTACGATTATTCAGAATTTTTGGTTGAGTGATCTTATAACCTCTTTTGGGAATTGAAGTTAATGTTTATGTGAACTTACTTAGGAAGATATTGTTCATGGCTGCCAATTGAGTTAGCAATTTCTTACCATTCGAACCAAGTGTCAAACCTCTCTTTTCTTTATATTGTTTGTAATGTATTTCCTTTGCATTTTGAATTTTGGAATTGTCATCCGTTCTATAAACAATGTTTGACTCATGTTGAGACAAAAGTCAACTTGAATCAATGGTTCAAAATGTGTGCAGTTGAACCAAAGTGATACATTTCAGCAAAGTGAGAAAGACACGATTTCAAATGTGCGCAC

mRNA sequence

ATGTCAGCTTTATCTAGAGGTCTCATTTCTCGTTTTCGTCTTCTCTCGATCAATTCAAGCGCTTCTCATTCAATTACTACTTCTTCTTCTTCTTCTTCTTCAAGGACAAATGCGTCCTGTTACTACTTCTTCCGTGCTTTCAGTACCCAGGATTTGACTCAGGCTAGCGATGGGTCTTTGTCAGCTTCTTCGATTTTTGAAGCTAAACCTGGTACTATGGGAAGTAACTCTACGCGGACGGGTGTTATTGCCGTCAAGTGTGGAATGTCGGCGTTGTGGGATAAATGGGGAGCTAGGATACCCATCACTGTGCTCTGGGTTGATGATAATATTGTGTCTCAGGTCAAGACCATTGAGAAAGAAGGTATCACAGCTCTACAGATTGGCTGTGGACAGAAGAAGGAAAAGCATTTGAGTAAACCTGAATTAGGCCATTTTAGGGCTCAAGGTGTTCCATTGAAGAGGAAGCTGAGGGAGTTCCCAGTGTCACAAGATGCACTTCTTCCAGTTGGTACAGAAATTGGCGTTCGCCATTTTGTTCCTGGACAGTATGTCGATGTGACAGGAATAAGTAGAGGGAAAGGTTTTCAGGGAGTGATGAAAAGGCATGGTTTCAAAGGAATGCCAGCATCCCACGGAGCATCATTATCTCATAGGAGCGGAGGTTCTACGGGTCAGAGGGATGCTCCTGGAAAGGTTTTCAAAGGCAGAAAGATGGCTGGGCGTATGGGTGGAAAGCAGAGAACTGTTAAAAATGTGTGGATATACAAAATTGACCCTGCAAGGAATTTGATGTGGGTGAAAGGACCAATCCCCGGTGCCGAAGGAAACTTTGTATTTATAAAAGACGCCGTGTACAAGAAACTCAATAAGTCGGCAATCCTTCCATTTCCTACGTACTTCGCAACTGATGGTGAGGACACAGACAAGTTGGAACCTCTTGTTGCTGATCTTGGAGAAGTAGATCCATTTATGACTGGAGATTGA

Coding sequence (CDS)

ATGTCAGCTTTATCTAGAGGTCTCATTTCTCGTTTTCGTCTTCTCTCGATCAATTCAAGCGCTTCTCATTCAATTACTACTTCTTCTTCTTCTTCTTCTTCAAGGACAAATGCGTCCTGTTACTACTTCTTCCGTGCTTTCAGTACCCAGGATTTGACTCAGGCTAGCGATGGGTCTTTGTCAGCTTCTTCGATTTTTGAAGCTAAACCTGGTACTATGGGAAGTAACTCTACGCGGACGGGTGTTATTGCCGTCAAGTGTGGAATGTCGGCGTTGTGGGATAAATGGGGAGCTAGGATACCCATCACTGTGCTCTGGGTTGATGATAATATTGTGTCTCAGGTCAAGACCATTGAGAAAGAAGGTATCACAGCTCTACAGATTGGCTGTGGACAGAAGAAGGAAAAGCATTTGAGTAAACCTGAATTAGGCCATTTTAGGGCTCAAGGTGTTCCATTGAAGAGGAAGCTGAGGGAGTTCCCAGTGTCACAAGATGCACTTCTTCCAGTTGGTACAGAAATTGGCGTTCGCCATTTTGTTCCTGGACAGTATGTCGATGTGACAGGAATAAGTAGAGGGAAAGGTTTTCAGGGAGTGATGAAAAGGCATGGTTTCAAAGGAATGCCAGCATCCCACGGAGCATCATTATCTCATAGGAGCGGAGGTTCTACGGGTCAGAGGGATGCTCCTGGAAAGGTTTTCAAAGGCAGAAAGATGGCTGGGCGTATGGGTGGAAAGCAGAGAACTGTTAAAAATGTGTGGATATACAAAATTGACCCTGCAAGGAATTTGATGTGGGTGAAAGGACCAATCCCCGGTGCCGAAGGAAACTTTGTATTTATAAAAGACGCCGTGTACAAGAAACTCAATAAGTCGGCAATCCTTCCATTTCCTACGTACTTCGCAACTGATGGTGAGGACACAGACAAGTTGGAACCTCTTGTTGCTGATCTTGGAGAAGTAGATCCATTTATGACTGGAGATTGA

Protein sequence

MSALSRGLISRFRLLSINSSASHSITTSSSSSSSRTNASCYYFFRAFSTQDLTQASDGSLSASSIFEAKPGTMGSNSTRTGVIAVKCGMSALWDKWGARIPITVLWVDDNIVSQVKTIEKEGITALQIGCGQKKEKHLSKPELGHFRAQGVPLKRKLREFPVSQDALLPVGTEIGVRHFVPGQYVDVTGISRGKGFQGVMKRHGFKGMPASHGASLSHRSGGSTGQRDAPGKVFKGRKMAGRMGGKQRTVKNVWIYKIDPARNLMWVKGPIPGAEGNFVFIKDAVYKKLNKSAILPFPTYFATDGEDTDKLEPLVADLGEVDPFMTGD

Homology

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BLAST of CsaV3_3G015540 vs. NCBI nr
Match: XP_004147630.1 (PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Cucumis sativus] >KGN57206.1 hypothetical protein Csa_3G171140 [Cucumis sativus])

HSP 1 Score: 560.5 bits (1443), Expect = 3.9e-156
Identity = 328/328 (100.00%), Postives = 328/328 (100.00%), Query Frame = 0


Query: 1   MSALSRGLISRFRLLSINSSXXXXXXXXXXXXXXXXXXXXXXXXRAFSTQDLTQASDGSL 60
           MSALSRGLISRFRLLSINSSXXXXXXXXXXXXXXXXXXXXXXXXRAFSTQDLTQASDGSL
Sbjct: 1   MSALSRGLISRFRLLSINSSXXXXXXXXXXXXXXXXXXXXXXXXRAFSTQDLTQASDGSL 60

Query: 61  SASSIFEAKPGTMGSNSTRTGVIAVKCGMSALWDKWGARIPITVLWVDDNIVSQVKTIEK 120
           SASSIFEAKPGTMGSNSTRTGVIAVKCGMSALWDKWGARIPITVLWVDDNIVSQVKTIEK
Sbjct: 61  SASSIFEAKPGTMGSNSTRTGVIAVKCGMSALWDKWGARIPITVLWVDDNIVSQVKTIEK 120

Query: 121 EGITALQIGCGQKKEKHLSKPELGHFRAQGVPLKRKLREFPVSQDALLPVGTEIGVRHFV 180
           EGITALQIGCGQKKEKHLSKPELGHFRAQGVPLKRKLREFPVSQDALLPVGTEIGVRHFV
Sbjct: 121 EGITALQIGCGQKKEKHLSKPELGHFRAQGVPLKRKLREFPVSQDALLPVGTEIGVRHFV 180

Query: 181 PGQYVDVTGISRGKGFQXXXXXXXXXXXXXXXXXXLSHRSGGSTGQRDAPGKVFKGRKMA 240
           PGQYVDVTGISRGKGFQXXXXXXXXXXXXXXXXXXLSHRSGGSTGQRDAPGKVFKGRKMA
Sbjct: 181 PGQYVDVTGISRGKGFQXXXXXXXXXXXXXXXXXXLSHRSGGSTGQRDAPGKVFKGRKMA 240

Query: 241 GRMGGKQRTVKNVWIYKIDPARNLMWVKGPIPGAEGNFVFIKDAVYKKLNKSAILPFPTY 300
           GRMGGKQRTVKNVWIYKIDPARNLMWVKGPIPGAEGNFVFIKDAVYKKLNKSAILPFPTY
Sbjct: 241 GRMGGKQRTVKNVWIYKIDPARNLMWVKGPIPGAEGNFVFIKDAVYKKLNKSAILPFPTY 300

Query: 301 FATDGEDTDKLEPLVADLGEVDPFMTGD 329
           FATDGEDTDKLEPLVADLGEVDPFMTGD
Sbjct: 301 FATDGEDTDKLEPLVADLGEVDPFMTGD 328

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BLAST of CsaV3_3G015540 vs. NCBI nr
Match: XP_008438999.1 (PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Cucumis melo] >ADN34039.1 50S ribosomal protein l3 [Cucumis melo subsp. melo])

HSP 1 Score: 537.0 bits (1382), Expect = 4.6e-149
Identity = 291/328 (88.72%), Postives = 296/328 (90.24%), Query Frame = 0


Query: 1   MSALSRGLISRFRLLSINSSXXXXXXXXXXXXXXXXXXXXXXXXRAFSTQDLTQASDGSL 60
           MSALSRGLISR RLLSINS                         RAFSTQDLTQASDGSL
Sbjct: 1   MSALSRGLISRLRLLSINSGASHSVTSSSYSSSSRTNASCYYFFRAFSTQDLTQASDGSL 60

Query: 61  SASSIFEAKPGTMGSNSTRTGVIAVKCGMSALWDKWGARIPITVLWVDDNIVSQVKTIEK 120
            ASSI EAKPGTM SNS RTGVIAVKCGMSALWDKWGARIPITVLWVDDNIVSQVKTIEK
Sbjct: 61  PASSIIEAKPGTMSSNSRRTGVIAVKCGMSALWDKWGARIPITVLWVDDNIVSQVKTIEK 120

Query: 121 EGITALQIGCGQKKEKHLSKPELGHFRAQGVPLKRKLREFPVSQDALLPVGTEIGVRHFV 180
           EGITALQIGCGQKKEKHLSKPELGHFRAQGVPLKRKL+EFPVSQDALLPVGTEIG RHFV
Sbjct: 121 EGITALQIGCGQKKEKHLSKPELGHFRAQGVPLKRKLKEFPVSQDALLPVGTEIGARHFV 180

Query: 181 PGQYVDVTGISRGKGFQXXXXXXXXXXXXXXXXXXLSHRSGGSTGQRDAPGKVFKGRKMA 240
           PGQYVDVTGISRGKGFQXXXXXXXXXXXXXXXXXXLSHRSGGSTGQRDAPGKVFKGRKMA
Sbjct: 181 PGQYVDVTGISRGKGFQXXXXXXXXXXXXXXXXXXLSHRSGGSTGQRDAPGKVFKGRKMA 240

Query: 241 GRMGGKQRTVKNVWIYKIDPARNLMWVKGPIPGAEGNFVFIKDAVYKKLNKSAILPFPTY 300
           GRMGGKQRTVKNVWIYKIDPARNL+WVKGPIPGAEG+FVFIKDA+YK+LNKSAILPFPTY
Sbjct: 241 GRMGGKQRTVKNVWIYKIDPARNLIWVKGPIPGAEGSFVFIKDAMYKRLNKSAILPFPTY 300

Query: 301 FATDGEDTDKLEPLVADLGEVDPFMTGD 329
           FATDGEDTDKLEPLVADLGEVDPFM GD
Sbjct: 301 FATDGEDTDKLEPLVADLGEVDPFMIGD 328

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BLAST of CsaV3_3G015540 vs. NCBI nr
Match: XP_022947107.1 (50S ribosomal protein L3-2, chloroplastic [Cucurbita moschata])

HSP 1 Score: 479.9 bits (1234), Expect = 6.7e-132
Identity = 272/328 (82.93%), Postives = 291/328 (88.72%), Query Frame = 0


Query: 1   MSALSRGLISRFRLLSINSSXXXXXXXXXXXXXXXXXXXXXXXXRAFSTQDLTQASDGSL 60
           MSALSRGLISRFRLLSINS+    XXXXXXXXXXX         R FST+   QA DGS 
Sbjct: 1   MSALSRGLISRFRLLSINSAASPTXXXXXXXXXXXTHPSCYFFFRTFSTEGSIQAGDGSS 60

Query: 61  SASSIFEAKPGTMGSNSTRTGVIAVKCGMSALWDKWGARIPITVLWVDDNIVSQVKTIEK 120
            +S I EAKPG M  NS RTGVIAVKCGMSALWDKWGAR+PITVLWVDDNIVSQVKTIEK
Sbjct: 61  LSSPIIEAKPGVMSPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEK 120

Query: 121 EGITALQIGCGQKKEKHLSKPELGHFRAQGVPLKRKLREFPVSQDALLPVGTEIGVRHFV 180
           EGITALQIGCGQKK KHL+KPE+GHFRAQGVPLKRKLREFPV++DALLPVGT IGVRHFV
Sbjct: 121 EGITALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFV 180

Query: 181 PGQYVDVTGISRGKGFQXXXXXXXXXXXXXXXXXXLSHRSGGSTGQRDAPGKVFKGRKMA 240
           PGQ++DVTGI+RGKGFQXXXXXXXXXXXXXXXXXXLSHRS GSTGQRDAPGKVFKG+KMA
Sbjct: 181 PGQFIDVTGITRGKGFQXXXXXXXXXXXXXXXXXXLSHRSLGSTGQRDAPGKVFKGKKMA 240

Query: 241 GRMGGKQRTVKNVWIYKIDPARNLMWVKGPIPGAEGNFVFIKDAVYKKLNKSAILPFPTY 300
           GRMGGKQRTVKNVW+YKIDPARNLMWV+G +PGAEGNFVFIKDA YKK +KS ILPFPTY
Sbjct: 241 GRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAFYKKPDKS-ILPFPTY 300

Query: 301 FATDGEDTDKLEPLVADLGEVDPFMTGD 329
           FA + EDT+ LEPLVADLGEVDPFM G+
Sbjct: 301 FANNDEDTETLEPLVADLGEVDPFMVGE 327

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BLAST of CsaV3_3G015540 vs. NCBI nr
Match: XP_023540684.1 (50S ribosomal protein L3-2, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 479.9 bits (1234), Expect = 6.7e-132
Identity = 273/328 (83.23%), Postives = 289/328 (88.11%), Query Frame = 0


Query: 1   MSALSRGLISRFRLLSINSSXXXXXXXXXXXXXXXXXXXXXXXXRAFSTQDLTQASDGSL 60
           MSALSRGLISRFRLLSINS+     XXXXXXXXX          R FST+   QA DGS 
Sbjct: 1   MSALSRGLISRFRLLSINSA-ASPIXXXXXXXXXWTHPSCYFFFRTFSTEGSIQAGDGSS 60

Query: 61  SASSIFEAKPGTMGSNSTRTGVIAVKCGMSALWDKWGARIPITVLWVDDNIVSQVKTIEK 120
            +S I EAKPG M  NS RTGVIAVKCGMSALWDKWGAR+PITVLWVDDNIVSQVKTIEK
Sbjct: 61  LSSPIIEAKPGVMSPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEK 120

Query: 121 EGITALQIGCGQKKEKHLSKPELGHFRAQGVPLKRKLREFPVSQDALLPVGTEIGVRHFV 180
           EGITALQIGCGQKK KHL+KPE+GHFRAQGVPLKRKLREFPV++DALLPVGT IGVRHFV
Sbjct: 121 EGITALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFV 180

Query: 181 PGQYVDVTGISRGKGFQXXXXXXXXXXXXXXXXXXLSHRSGGSTGQRDAPGKVFKGRKMA 240
           PGQ+VDVTGI+RGKGFQXXXXXXXXXXXXXXXXXXLSHRS GSTGQRDAPGKVFKG+KMA
Sbjct: 181 PGQFVDVTGITRGKGFQXXXXXXXXXXXXXXXXXXLSHRSLGSTGQRDAPGKVFKGKKMA 240

Query: 241 GRMGGKQRTVKNVWIYKIDPARNLMWVKGPIPGAEGNFVFIKDAVYKKLNKSAILPFPTY 300
           GRMGGKQRTVKNVW+YKIDPARNLMWV+G +PGAEGNFVFIKDA YKK NKS ILPFPTY
Sbjct: 241 GRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAFYKKPNKS-ILPFPTY 300

Query: 301 FATDGEDTDKLEPLVADLGEVDPFMTGD 329
           FA D EDT+ LEPLVADLGEVDPFM G+
Sbjct: 301 FANDDEDTETLEPLVADLGEVDPFMVGE 326

[Close]

BLAST of CsaV3_3G015540 vs. NCBI nr
Match: XP_022138212.1 (50S ribosomal protein L3-2, chloroplastic [Momordica charantia])

HSP 1 Score: 444.1 bits (1141), Expect = 4.1e-121
Identity = 250/328 (76.22%), Postives = 265/328 (80.79%), Query Frame = 0


Query: 1   MSALSRGLISRFRLLSINSSXXXXXXXXXXXXXXXXXXXXXXXXRAFSTQDLTQASDGSL 60
           MSALSRGL+SRFRLLSINS                         R+FS++DL QA D S 
Sbjct: 1   MSALSRGLVSRFRLLSINSG----ASSTISPSSSRTHPSCYYFFRSFSSEDLIQAGDVSS 60

Query: 61  SASSIFEAKPGTMGSNSTRTGVIAVKCGMSALWDKWGARIPITVLWVDDNIVSQVKTIEK 120
            +S I EAKPG M  NS RTGVIAVKCGMSALWDKWGARIPITVLWVDDNIVSQVKTIEK
Sbjct: 61  PSSPIIEAKPGVMAPNSKRTGVIAVKCGMSALWDKWGARIPITVLWVDDNIVSQVKTIEK 120

Query: 121 EGITALQIGCGQKKEKHLSKPELGHFRAQGVPLKRKLREFPVSQDALLPVGTEIGVRHFV 180
           EGITALQIGCGQKK KHL+KPELGHFRAQGVPLKRKLREFPVS DALLPVGT IGVRHFV
Sbjct: 121 EGITALQIGCGQKKAKHLTKPELGHFRAQGVPLKRKLREFPVSADALLPVGTTIGVRHFV 180

Query: 181 PGQYVDVTGISRGKGFQXXXXXXXXXXXXXXXXXXLSHRSGGSTGQRDAPGKVFKGRKMA 240
           PGQYVDVTGI+RGKGFQXXXXXXXXXXXXXXXXXX                 VFKG+KM 
Sbjct: 181 PGQYVDVTGITRGKGFQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVFKGKKMP 240

Query: 241 GRMGGKQRTVKNVWIYKIDPARNLMWVKGPIPGAEGNFVFIKDAVYKKLNKSAILPFPTY 300
           GRMGGKQRTVKNVW+YKIDPARNL+WVKG +PGAEGNFVFIKDA YKK +KS ILPFPTY
Sbjct: 241 GRMGGKQRTVKNVWVYKIDPARNLIWVKGQVPGAEGNFVFIKDAFYKKPDKS-ILPFPTY 300

Query: 301 FATDGEDTDKLEPLVADLGEVDPFMTGD 329
           FAT+ ED++KLEPLVADLGEVDPFM GD
Sbjct: 301 FATEDEDSEKLEPLVADLGEVDPFMVGD 323

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BLAST of CsaV3_3G015540 vs. TAIR10
Match: AT3G17465.1 (ribosomal protein L3 plastid)

HSP 1 Score: 409.1 bits (1050), Expect = 2.6e-114
Identity = 230/332 (69.28%), Postives = 254/332 (76.51%), Query Frame = 0


Query: 1   MSALSRGLISRF-RLLSINSSXXXXXXXXXXXXXXXXXXXXXXXXRAFSTQDLTQASDGS 60
           M+A+ RGL+SR  + LSI S                         R FS+        GS
Sbjct: 1   MAAVPRGLLSRINQFLSIRS-------ITPSSSESLPHCSSFFLIRRFSSDTGLMDGGGS 60

Query: 61  ---LSASSIFEAKPGTMGSNSTRTGVIAVKCGMSALWDKWGARIPITVLWVDDNIVSQVK 120
               + + I EAK G M S S RTG+IAVKCGM+ALWDKWG RIPI++LWVDDNIVSQVK
Sbjct: 61  DIIGAQTRIIEAKQGEMSSRSKRTGIIAVKCGMTALWDKWGKRIPISILWVDDNIVSQVK 120

Query: 121 TIEKEGITALQIGCGQKKEKHLSKPELGHFRAQGVPLKRKLREFPVSQDALLPVGTEIGV 180
           T+EKEGI ALQIGCGQKK KHLSK  +GHFRAQGVPLKRKLREFPV++DALLPVGT +GV
Sbjct: 121 TVEKEGIFALQIGCGQKKPKHLSKAVVGHFRAQGVPLKRKLREFPVTEDALLPVGTSLGV 180

Query: 181 RHFVPGQYVDVTGISRGKGFQXXXXXXXXXXXXXXXXXXLSHRSGGSTGQRDAPGKVFKG 240
           RHFVPGQYVDVTGI+RGKGFQ     XXXXXXXXXXXXXLSHRSGGSTGQRDAPGKVFKG
Sbjct: 181 RHFVPGQYVDVTGITRGKGFQGCMKRXXXXXXXXXXXXXLSHRSGGSTGQRDAPGKVFKG 240

Query: 241 RKMAGRMGGKQRTVKNVWIYKIDPARNLMWVKGPIPGAEGNFVFIKDAVYKKLNKSAILP 300
           RKMAGRMG  QRTVKNVW+YKIDPARNLMWV+G +PGAEGNFVFIKDA  KK + S  LP
Sbjct: 241 RKMAGRMGADQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAWCKKPDISK-LP 300

Query: 301 FPTYFATDGEDTDKLEPLVADLGEVDPFMTGD 329
           FPTY A + ED  +LEPLVADLGEVDPFM  +
Sbjct: 301 FPTYLAPEDEDPSELEPLVADLGEVDPFMLAE 324

[Close]

BLAST of CsaV3_3G015540 vs. TAIR10
Match: AT2G43030.1 (Ribosomal protein L3 family protein)

HSP 1 Score: 127.1 bits (318), Expect = 2.0e-29
Identity = 79/230 (34.35%), Postives = 123/230 (53.48%), Query Frame = 0


Query: 61  SASSIFEAKPGT----MGSNSTRTGVIAVKCGMSALWDKWGARIPITVL-WVDDNIVSQV 120
           S+S + ++ P T      S     GV+  K GM + +++ G  +P+TV+ + + NIV+Q+
Sbjct: 33  SSSLLIKSSPKTRFVVSSSMEAGIGVMGSKLGMMSFFEEDGTVVPVTVVGFREGNIVTQI 92

Query: 121 KTIEKEGITALQIGCGQKKEKHLSKPELGHFRAQGVPLKRKLREFPVSQ-DALLPVGTEI 180
           KT+  +G  A+QIG  + ++K L+KPE GH +  G    R L+EF ++  +   P    +
Sbjct: 93  KTLATDGYDAVQIGYRRVRDKKLTKPETGHLQKAGTIPMRHLQEFRLTNIEGFEPNQKLV 152

Query: 181 GVRHFVPGQYVDVTGISRGKGFQXXXXXXXXXXXXXXXXXXLSHRSGGSTGQRDAPGKVF 240
               F  G  VDV G + GKGFQ                   SHR+ GS G    PG+V+
Sbjct: 153 FDEIFKEGDLVDVAGTTIGKGFQGGIKRHHFKRGQMTHGSK-SHRALGSIGAGTTPGRVY 212

Query: 241 KGRKMAGRMGGKQRTVKNVWIYKIDPARNLMWVKGPIPGAEGNFVFIKDA 285
           KG+KM GRMGG +  ++ + I K+D   N++ +KG +PG  GN + I  A
Sbjct: 213 KGKKMPGRMGGTRTKIRKLKIVKVDKELNVVMIKGALPGKPGNLLRITPA 261

[Close]

BLAST of CsaV3_3G015540 vs. Swiss-Prot
Match: sp|Q9LRN8|RK3B_ARATH (50S ribosomal protein L3-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL3B PE=2 SV=1)

HSP 1 Score: 409.1 bits (1050), Expect = 4.8e-113
Identity = 230/332 (69.28%), Postives = 254/332 (76.51%), Query Frame = 0


Query: 1   MSALSRGLISRF-RLLSINSSXXXXXXXXXXXXXXXXXXXXXXXXRAFSTQDLTQASDGS 60
           M+A+ RGL+SR  + LSI S                         R FS+        GS
Sbjct: 1   MAAVPRGLLSRINQFLSIRS-------ITPSSSESLPHCSSFFLIRRFSSDTGLMDGGGS 60

Query: 61  ---LSASSIFEAKPGTMGSNSTRTGVIAVKCGMSALWDKWGARIPITVLWVDDNIVSQVK 120
               + + I EAK G M S S RTG+IAVKCGM+ALWDKWG RIPI++LWVDDNIVSQVK
Sbjct: 61  DIIGAQTRIIEAKQGEMSSRSKRTGIIAVKCGMTALWDKWGKRIPISILWVDDNIVSQVK 120

Query: 121 TIEKEGITALQIGCGQKKEKHLSKPELGHFRAQGVPLKRKLREFPVSQDALLPVGTEIGV 180
           T+EKEGI ALQIGCGQKK KHLSK  +GHFRAQGVPLKRKLREFPV++DALLPVGT +GV
Sbjct: 121 TVEKEGIFALQIGCGQKKPKHLSKAVVGHFRAQGVPLKRKLREFPVTEDALLPVGTSLGV 180

Query: 181 RHFVPGQYVDVTGISRGKGFQXXXXXXXXXXXXXXXXXXLSHRSGGSTGQRDAPGKVFKG 240
           RHFVPGQYVDVTGI+RGKGFQ     XXXXXXXXXXXXXLSHRSGGSTGQRDAPGKVFKG
Sbjct: 181 RHFVPGQYVDVTGITRGKGFQGCMKRXXXXXXXXXXXXXLSHRSGGSTGQRDAPGKVFKG 240

Query: 241 RKMAGRMGGKQRTVKNVWIYKIDPARNLMWVKGPIPGAEGNFVFIKDAVYKKLNKSAILP 300
           RKMAGRMG  QRTVKNVW+YKIDPARNLMWV+G +PGAEGNFVFIKDA  KK + S  LP
Sbjct: 241 RKMAGRMGADQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAWCKKPDISK-LP 300

Query: 301 FPTYFATDGEDTDKLEPLVADLGEVDPFMTGD 329
           FPTY A + ED  +LEPLVADLGEVDPFM  +
Sbjct: 301 FPTYLAPEDEDPSELEPLVADLGEVDPFMLAE 324

[Close]

BLAST of CsaV3_3G015540 vs. Swiss-Prot
Match: sp|Q2G8Y0|RL3_NOVAD (50S ribosomal protein L3 OS=Novosphingobium aromaticivorans (strain ATCC 700278 / DSM 12444 / CIP 105152 / NBRC 16084 / F199) OX=279238 GN=rplC PE=3 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 2.6e-50
Identity = 99/220 (45.00%), Postives = 146/220 (66.36%), Query Frame = 0


Query: 79  RTGVIAVKCGMSALWDKWGARIPITVLWVDDNIVSQVKTIEKEGITALQIGCGQKKEKHL 138
           RTGVIA K GM+ L+ + G  +P+TVL +++  V  V+T E++G  ALQ+G G+ K+K++
Sbjct: 2   RTGVIAKKVGMTRLFQEDGRHVPVTVLSLENCQVVSVRTAERDGYVALQLGAGEAKQKNV 61

Query: 139 SKPELGHFRAQGVPLKRKLREFPVSQDALLPVGTEIGVRHFVPGQYVDVTGISRGKGFQX 198
           +KP+  HF    VPLK ++ EF V+ DALL VG+ I   HFVPGQYVD+TG ++GKGFQ 
Sbjct: 62  AKPQREHFAKAEVPLKMEVAEFRVADDALLDVGSTIAASHFVPGQYVDITGQTQGKGFQG 121

Query: 199 XXXXXXXXXXXXXXXXXLSHRSGGSTGQRDAPGKVFKGRKMAGRMGGKQRTVKNVWIYKI 258
                            +SHR+ GSTG R  PG+VFK +KMAG MG +QRT +N+ + + 
Sbjct: 122 AMKRWGFGGMRATHGVSISHRAHGSTGNRQDPGRVFKNKKMAGHMGDRQRTQQNLEVVRT 181

Query: 259 DPARNLMWVKGPIPGAEGNFVFIKDAVYKKLNKSAILPFP 299
           D  R L++VKG +PG++  ++ ++DAV  K+++ A  P+P
Sbjct: 182 DDERGLIFVKGSVPGSKNAWLLVRDAV--KVSRHAEAPYP 219

[Close]

BLAST of CsaV3_3G015540 vs. Swiss-Prot
Match: sp|Q5NQ64|RL3_ZYMMO (50S ribosomal protein L3 OS=Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) OX=264203 GN=rplC PE=3 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 2.4e-48
Identity = 101/239 (42.26%), Postives = 145/239 (60.67%), Query Frame = 0


Query: 79  RTGVIAVKCGMSALWDKWGARIPITVLWVDDNIVSQVKTIEKEGITALQIGCGQKKEKHL 138
           RTGVIA K GM+ L+ + G  +P+TVL ++D  V  VK  +++G  A+Q+G G  K K++
Sbjct: 2   RTGVIAKKVGMTRLFQEDGRHVPVTVLKLEDVQVVAVKNKDQDGYVAVQLGAGSAKAKNV 61

Query: 139 SKPELGHFRAQGVPLKRKLREFPVSQDALLPVGTEIGVRHFVPGQYVDVTGISRGKGFQX 198
           +KP  GHF    V LK KL EFPVS+DA+L VGT I   HF+ GQ VD++G ++GKGF  
Sbjct: 62  TKPVRGHFAKAEVELKAKLVEFPVSEDAVLEVGTSISADHFIAGQLVDISGQTQGKGFAG 121

Query: 199 XXXXXXXXXXXXXXXXXLSHRSGGSTGQRDAPGKVFKGRKMAGRMGGKQRTVKNVWIYKI 258
                            LSHRS GSTG R  PG+VFK +KMAG MG +QRT +N+ +   
Sbjct: 122 AMKRWGFGGLRATHGVSLSHRSHGSTGNRQDPGRVFKNKKMAGHMGARQRTQQNLEVIST 181

Query: 259 DPARNLMWVKGPIPGAEGNFVFIKDAVYKKLNKSAILPFPTYFATDGEDTDKLEPLVAD 318
           D  R+L++V+G +PG++G ++ I+DAV  K+ +    P+P        +     P+ A+
Sbjct: 182 DAERDLIFVRGSVPGSKGAWLIIRDAV--KVARPTDAPYPAAIKAANGNEAPAAPVAAE 238

[Close]

BLAST of CsaV3_3G015540 vs. Swiss-Prot
Match: sp|Q5LLU6|RL3_RUEPO (50S ribosomal protein L3 OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) OX=246200 GN=rplC PE=3 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 3.1e-48
Identity = 105/220 (47.73%), Postives = 138/220 (62.73%), Query Frame = 0


Query: 79  RTGVIAVKCGMSALWDKWGARIPITVLWVDDNIVSQVKTIEKEGITALQIGCGQKKEKHL 138
           R+G+IA K GM+ L+ + G +IP+TVL +D+  V   +T EK+G TA+Q+G G  K K +
Sbjct: 2   RSGIIAKKVGMTRLFMEDGKQIPVTVLQLDNLQVVAQRTTEKDGYTAVQLGAGTPKIKRV 61

Query: 139 SKPELGHFRAQGVPLKRKLREFPVSQDALLPVGTEIGVRHFVPGQYVDVTGISRGKGFQX 198
           SK   GHF AQ V  KRKL EF VS+DAL+ VG EI   HF+ GQ VDV+G S GKGF  
Sbjct: 62  SKAMRGHFAAQKVEPKRKLAEFRVSEDALIEVGAEISAEHFLTGQKVDVSGTSIGKGFAG 121

Query: 199 XXXXXXXXXXXXXXXXXLSHRSGGSTGQRDAPGKVFKGRKMAGRMGGKQRTVKNVWIYKI 258
                            +SHRS GSTGQ   PG+VFKG+KMAG MG  + T +N+ + K 
Sbjct: 122 AMKRHNFGGLRASHGVSISHRSHGSTGQCQDPGRVFKGKKMAGHMGAARVTTQNLEVVKT 181

Query: 259 DPARNLMWVKGPIPGAEGNFVFIKDAVYKKLNKSAILPFP 299
           D  R L+++KG +PG +  +V +KDAV KK  +   LPFP
Sbjct: 182 DAERGLVFIKGAVPGPKSGWVTVKDAVKKKAPEG--LPFP 219

[Close]

BLAST of CsaV3_3G015540 vs. Swiss-Prot
Match: sp|Q2W2J1|RL3_MAGSA (50S ribosomal protein L3 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) OX=342108 GN=rplC PE=3 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 4.1e-48
Identity = 101/220 (45.91%), Postives = 138/220 (62.73%), Query Frame = 0


Query: 79  RTGVIAVKCGMSALWDKWGARIPITVLWVDDNIVSQVKTIEKEGITALQIGCGQKKEKHL 138
           R+G+IA K GM+ ++ + G  +P+TVL VD   V   +++EK+G  A+Q+G G  K K++
Sbjct: 2   RSGLIAQKVGMTRIFTEDGTHVPVTVLKVDTCQVVSTRSVEKDGYVAVQLGAGTAKVKNV 61

Query: 139 SKPELGHFRAQGVPLKRKLREFPVSQDALLPVGTEIGVRHFVPGQYVDVTGISRGKGFQX 198
           SKP   +F    V  K+KL EF V+ + LL VGTE+   HF+PGQYVDVTG + GKGF  
Sbjct: 62  SKPARANFAKAKVEPKKKLVEFRVAPENLLEVGTELSAAHFIPGQYVDVTGTTIGKGFAG 121

Query: 199 XXXXXXXXXXXXXXXXXLSHRSGGSTGQRDAPGKVFKGRKMAGRMGGKQRTVKNVWIYKI 258
                            +SHRS GSTGQR  PGKVFKG+KMAG MG +Q T +N+ +   
Sbjct: 122 GMKRWNFRGLEATHGVSVSHRSHGSTGQRQDPGKVFKGKKMAGHMGDEQVTTQNLTVVST 181

Query: 259 DPARNLMWVKGPIPGAEGNFVFIKDAVYKKLNKSAILPFP 299
           D  R L+ VKG +PG EG++V ++DAV +KL     +PFP
Sbjct: 182 DADRGLILVKGSVPGHEGSWVLVRDAVKRKLPDG--VPFP 219

[Close]

BLAST of CsaV3_3G015540 vs. TrEMBL
Match: tr|A0A0A0LAV0|A0A0A0LAV0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171140 PE=3 SV=1)

HSP 1 Score: 560.5 bits (1443), Expect = 2.6e-156
Identity = 328/328 (100.00%), Postives = 328/328 (100.00%), Query Frame = 0


Query: 1   MSALSRGLISRFRLLSINSSXXXXXXXXXXXXXXXXXXXXXXXXRAFSTQDLTQASDGSL 60
           MSALSRGLISRFRLLSINSSXXXXXXXXXXXXXXXXXXXXXXXXRAFSTQDLTQASDGSL
Sbjct: 1   MSALSRGLISRFRLLSINSSXXXXXXXXXXXXXXXXXXXXXXXXRAFSTQDLTQASDGSL 60

Query: 61  SASSIFEAKPGTMGSNSTRTGVIAVKCGMSALWDKWGARIPITVLWVDDNIVSQVKTIEK 120
           SASSIFEAKPGTMGSNSTRTGVIAVKCGMSALWDKWGARIPITVLWVDDNIVSQVKTIEK
Sbjct: 61  SASSIFEAKPGTMGSNSTRTGVIAVKCGMSALWDKWGARIPITVLWVDDNIVSQVKTIEK 120

Query: 121 EGITALQIGCGQKKEKHLSKPELGHFRAQGVPLKRKLREFPVSQDALLPVGTEIGVRHFV 180
           EGITALQIGCGQKKEKHLSKPELGHFRAQGVPLKRKLREFPVSQDALLPVGTEIGVRHFV
Sbjct: 121 EGITALQIGCGQKKEKHLSKPELGHFRAQGVPLKRKLREFPVSQDALLPVGTEIGVRHFV 180

Query: 181 PGQYVDVTGISRGKGFQXXXXXXXXXXXXXXXXXXLSHRSGGSTGQRDAPGKVFKGRKMA 240
           PGQYVDVTGISRGKGFQXXXXXXXXXXXXXXXXXXLSHRSGGSTGQRDAPGKVFKGRKMA
Sbjct: 181 PGQYVDVTGISRGKGFQXXXXXXXXXXXXXXXXXXLSHRSGGSTGQRDAPGKVFKGRKMA 240

Query: 241 GRMGGKQRTVKNVWIYKIDPARNLMWVKGPIPGAEGNFVFIKDAVYKKLNKSAILPFPTY 300
           GRMGGKQRTVKNVWIYKIDPARNLMWVKGPIPGAEGNFVFIKDAVYKKLNKSAILPFPTY
Sbjct: 241 GRMGGKQRTVKNVWIYKIDPARNLMWVKGPIPGAEGNFVFIKDAVYKKLNKSAILPFPTY 300

Query: 301 FATDGEDTDKLEPLVADLGEVDPFMTGD 329
           FATDGEDTDKLEPLVADLGEVDPFMTGD
Sbjct: 301 FATDGEDTDKLEPLVADLGEVDPFMTGD 328

[Close]

BLAST of CsaV3_3G015540 vs. TrEMBL
Match: tr|A0A1S3AYD1|A0A1S3AYD1_CUCME (50S ribosomal protein L3-2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483925 PE=3 SV=1)

HSP 1 Score: 537.0 bits (1382), Expect = 3.1e-149
Identity = 291/328 (88.72%), Postives = 296/328 (90.24%), Query Frame = 0


Query: 1   MSALSRGLISRFRLLSINSSXXXXXXXXXXXXXXXXXXXXXXXXRAFSTQDLTQASDGSL 60
           MSALSRGLISR RLLSINS                         RAFSTQDLTQASDGSL
Sbjct: 1   MSALSRGLISRLRLLSINSGASHSVTSSSYSSSSRTNASCYYFFRAFSTQDLTQASDGSL 60

Query: 61  SASSIFEAKPGTMGSNSTRTGVIAVKCGMSALWDKWGARIPITVLWVDDNIVSQVKTIEK 120
            ASSI EAKPGTM SNS RTGVIAVKCGMSALWDKWGARIPITVLWVDDNIVSQVKTIEK
Sbjct: 61  PASSIIEAKPGTMSSNSRRTGVIAVKCGMSALWDKWGARIPITVLWVDDNIVSQVKTIEK 120

Query: 121 EGITALQIGCGQKKEKHLSKPELGHFRAQGVPLKRKLREFPVSQDALLPVGTEIGVRHFV 180
           EGITALQIGCGQKKEKHLSKPELGHFRAQGVPLKRKL+EFPVSQDALLPVGTEIG RHFV
Sbjct: 121 EGITALQIGCGQKKEKHLSKPELGHFRAQGVPLKRKLKEFPVSQDALLPVGTEIGARHFV 180

Query: 181 PGQYVDVTGISRGKGFQXXXXXXXXXXXXXXXXXXLSHRSGGSTGQRDAPGKVFKGRKMA 240
           PGQYVDVTGISRGKGFQXXXXXXXXXXXXXXXXXXLSHRSGGSTGQRDAPGKVFKGRKMA
Sbjct: 181 PGQYVDVTGISRGKGFQXXXXXXXXXXXXXXXXXXLSHRSGGSTGQRDAPGKVFKGRKMA 240

Query: 241 GRMGGKQRTVKNVWIYKIDPARNLMWVKGPIPGAEGNFVFIKDAVYKKLNKSAILPFPTY 300
           GRMGGKQRTVKNVWIYKIDPARNL+WVKGPIPGAEG+FVFIKDA+YK+LNKSAILPFPTY
Sbjct: 241 GRMGGKQRTVKNVWIYKIDPARNLIWVKGPIPGAEGSFVFIKDAMYKRLNKSAILPFPTY 300

Query: 301 FATDGEDTDKLEPLVADLGEVDPFMTGD 329
           FATDGEDTDKLEPLVADLGEVDPFM GD
Sbjct: 301 FATDGEDTDKLEPLVADLGEVDPFMIGD 328

[Close]

BLAST of CsaV3_3G015540 vs. TrEMBL
Match: tr|E5GC40|E5GC40_CUCME (50S ribosomal protein l3 OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 537.0 bits (1382), Expect = 3.1e-149
Identity = 291/328 (88.72%), Postives = 296/328 (90.24%), Query Frame = 0


Query: 1   MSALSRGLISRFRLLSINSSXXXXXXXXXXXXXXXXXXXXXXXXRAFSTQDLTQASDGSL 60
           MSALSRGLISR RLLSINS                         RAFSTQDLTQASDGSL
Sbjct: 1   MSALSRGLISRLRLLSINSGASHSVTSSSYSSSSRTNASCYYFFRAFSTQDLTQASDGSL 60

Query: 61  SASSIFEAKPGTMGSNSTRTGVIAVKCGMSALWDKWGARIPITVLWVDDNIVSQVKTIEK 120
            ASSI EAKPGTM SNS RTGVIAVKCGMSALWDKWGARIPITVLWVDDNIVSQVKTIEK
Sbjct: 61  PASSIIEAKPGTMSSNSRRTGVIAVKCGMSALWDKWGARIPITVLWVDDNIVSQVKTIEK 120

Query: 121 EGITALQIGCGQKKEKHLSKPELGHFRAQGVPLKRKLREFPVSQDALLPVGTEIGVRHFV 180
           EGITALQIGCGQKKEKHLSKPELGHFRAQGVPLKRKL+EFPVSQDALLPVGTEIG RHFV
Sbjct: 121 EGITALQIGCGQKKEKHLSKPELGHFRAQGVPLKRKLKEFPVSQDALLPVGTEIGARHFV 180

Query: 181 PGQYVDVTGISRGKGFQXXXXXXXXXXXXXXXXXXLSHRSGGSTGQRDAPGKVFKGRKMA 240
           PGQYVDVTGISRGKGFQXXXXXXXXXXXXXXXXXXLSHRSGGSTGQRDAPGKVFKGRKMA
Sbjct: 181 PGQYVDVTGISRGKGFQXXXXXXXXXXXXXXXXXXLSHRSGGSTGQRDAPGKVFKGRKMA 240

Query: 241 GRMGGKQRTVKNVWIYKIDPARNLMWVKGPIPGAEGNFVFIKDAVYKKLNKSAILPFPTY 300
           GRMGGKQRTVKNVWIYKIDPARNL+WVKGPIPGAEG+FVFIKDA+YK+LNKSAILPFPTY
Sbjct: 241 GRMGGKQRTVKNVWIYKIDPARNLIWVKGPIPGAEGSFVFIKDAMYKRLNKSAILPFPTY 300

Query: 301 FATDGEDTDKLEPLVADLGEVDPFMTGD 329
           FATDGEDTDKLEPLVADLGEVDPFM GD
Sbjct: 301 FATDGEDTDKLEPLVADLGEVDPFMIGD 328

[Close]

BLAST of CsaV3_3G015540 vs. TrEMBL
Match: tr|A0A2P5CCV5|A0A2P5CCV5_PARAD (Ribosomal protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_163830 PE=3 SV=1)

HSP 1 Score: 440.3 bits (1131), Expect = 3.9e-120
Identity = 223/328 (67.99%), Postives = 252/328 (76.83%), Query Frame = 0


Query: 1   MSALSRGLISRFRLLSINSSXXXXXXXXXXXXXXXXXXXXXXXXRAFSTQDLTQASDGSL 60
           MSALSRG +SRFR L+ N +                        R FS++ L  A D   
Sbjct: 1   MSALSRGFVSRFRYLAFNPA-----------------TLSNNSLRRFSSESLVDAHD--- 60

Query: 61  SASSIFEAKPGTMGSNSTRTGVIAVKCGMSALWDKWGARIPITVLWVDDNIVSQVKTIEK 120
            ++ I EAKPG M  +S R G+IAVKCGM+ALWDKWGAR+PI++LWVDDNIVSQVKT EK
Sbjct: 61  -STRIIEAKPGVMTPSSRRPGLIAVKCGMTALWDKWGARVPISILWVDDNIVSQVKTPEK 120

Query: 121 EGITALQIGCGQKKEKHLSKPELGHFRAQGVPLKRKLREFPVSQDALLPVGTEIGVRHFV 180
           EGITALQIGCGQKKEKHL+KPE+GHFRAQGVP++RKLREFPV++DALLPVGT +GVRHFV
Sbjct: 121 EGITALQIGCGQKKEKHLTKPEVGHFRAQGVPMQRKLREFPVTEDALLPVGTSLGVRHFV 180

Query: 181 PGQYVDVTGISRGKGFQXXXXXXXXXXXXXXXXXXLSHRSGGSTGQRDAPGKVFKGRKMA 240
           PGQYVDVTGI+RGKGFQ                  LSHRS GSTGQRDAPGKVFKG+KM 
Sbjct: 181 PGQYVDVTGITRGKGFQGVMKKYGFKGGPASHGASLSHRSPGSTGQRDAPGKVFKGKKMP 240

Query: 241 GRMGGKQRTVKNVWIYKIDPARNLMWVKGPIPGAEGNFVFIKDAVYKKLNKSAILPFPTY 300
           GRMGG+QRTVKNVW+YKIDPARNLMWVKG IPGAEGNFVFIKDAVYKK + S +LPFPTY
Sbjct: 241 GRMGGQQRTVKNVWVYKIDPARNLMWVKGQIPGAEGNFVFIKDAVYKKPDIS-LLPFPTY 300

Query: 301 FATDGEDTDKLEPLVADLGEVDPFMTGD 329
           F  +GED  +L+PLVADLGEVDPFM  D
Sbjct: 301 FPAEGEDPTELKPLVADLGEVDPFMVAD 306

[Close]

BLAST of CsaV3_3G015540 vs. TrEMBL
Match: tr|A0A2P5FPU6|A0A2P5FPU6_9ROSA (Ribosomal protein OS=Trema orientalis OX=63057 GN=TorRG33x02_045510 PE=3 SV=1)

HSP 1 Score: 435.3 bits (1118), Expect = 1.3e-118
Identity = 221/328 (67.38%), Postives = 250/328 (76.22%), Query Frame = 0


Query: 1   MSALSRGLISRFRLLSINSSXXXXXXXXXXXXXXXXXXXXXXXXRAFSTQDLTQASDGSL 60
           MSALSRG +SRFR L+ N +                        R FS++ L     G+ 
Sbjct: 1   MSALSRGFVSRFRYLAFNPA-----------------TPFDNALRRFSSEPLV----GAH 60

Query: 61  SASSIFEAKPGTMGSNSTRTGVIAVKCGMSALWDKWGARIPITVLWVDDNIVSQVKTIEK 120
            ++ + EAKPG M  NS R G+IAVKCGM+ALWDKWGARIPI++LWVDDNIVSQVKT EK
Sbjct: 61  ESTRVIEAKPGVMTPNSRRPGLIAVKCGMTALWDKWGARIPISILWVDDNIVSQVKTPEK 120

Query: 121 EGITALQIGCGQKKEKHLSKPELGHFRAQGVPLKRKLREFPVSQDALLPVGTEIGVRHFV 180
           EGITALQIGCGQKKEKHL+KPE+GHFRAQGVP++RKLREFPV++DALLPVGT +GVRHFV
Sbjct: 121 EGITALQIGCGQKKEKHLTKPEVGHFRAQGVPMQRKLREFPVTEDALLPVGTSLGVRHFV 180

Query: 181 PGQYVDVTGISRGKGFQXXXXXXXXXXXXXXXXXXLSHRSGGSTGQRDAPGKVFKGRKMA 240
           PGQYVDVTGI+RGKGFQ                  LSHRS GSTGQRDAPGKVFKG+KM 
Sbjct: 181 PGQYVDVTGITRGKGFQGVMKKYGFKGGPASHGASLSHRSPGSTGQRDAPGKVFKGKKMP 240

Query: 241 GRMGGKQRTVKNVWIYKIDPARNLMWVKGPIPGAEGNFVFIKDAVYKKLNKSAILPFPTY 300
           GRMGG+QRTVKNVW+YKIDP RNLMWVKG IPGAEGNFVFIKDAVYKK + S +LPFPTY
Sbjct: 241 GRMGGQQRTVKNVWVYKIDPTRNLMWVKGQIPGAEGNFVFIKDAVYKKPDIS-LLPFPTY 300

Query: 301 FATDGEDTDKLEPLVADLGEVDPFMTGD 329
           F  + ED  +L+PLVADLGEVDPFM  D
Sbjct: 301 FPAEDEDPTELKPLVADLGEVDPFMVAD 306

The following BLAST results are available for this feature:

BLAST of CsaV3_3G015540 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004147630.1	3.9e-156	100.00	PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Cucumis sativus] >KGN57206...	[more]
XP_008438999.1	4.6e-149	88.72	PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Cucumis melo] >ADN34039.1 ...	[more]
XP_022947107.1	6.7e-132	82.93	50S ribosomal protein L3-2, chloroplastic [Cucurbita moschata]	[more]
XP_023540684.1	6.7e-132	83.23	50S ribosomal protein L3-2, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022138212.1	4.1e-121	76.22	50S ribosomal protein L3-2, chloroplastic [Momordica charantia]	[more]

BLAST of CsaV3_3G015540 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G17465.1	2.6e-114	69.28	ribosomal protein L3 plastid	[more]
AT2G43030.1	2.0e-29	34.35	Ribosomal protein L3 family protein	[more]

BLAST of CsaV3_3G015540 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LRN8\|RK3B_ARATH	4.8e-113	69.28	50S ribosomal protein L3-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL...	[more]
sp\|Q2G8Y0\|RL3_NOVAD	2.6e-50	45.00	50S ribosomal protein L3 OS=Novosphingobium aromaticivorans (strain ATCC 700278 ...	[more]
sp\|Q5NQ64\|RL3_ZYMMO	2.4e-48	42.26	50S ribosomal protein L3 OS=Zymomonas mobilis subsp. mobilis (strain ATCC 31821 ...	[more]
sp\|Q5LLU6\|RL3_RUEPO	3.1e-48	47.73	50S ribosomal protein L3 OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / ...	[more]
sp\|Q2W2J1\|RL3_MAGSA	4.1e-48	45.91	50S ribosomal protein L3 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700...	[more]

BLAST of CsaV3_3G015540 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LAV0\|A0A0A0LAV0_CUCSA	2.6e-156	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171140 PE=3 SV=1	[more]
tr\|A0A1S3AYD1\|A0A1S3AYD1_CUCME	3.1e-149	88.72	50S ribosomal protein L3-2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC10348392...	[more]
tr\|E5GC40\|E5GC40_CUCME	3.1e-149	88.72	50S ribosomal protein l3 OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1	[more]
tr\|A0A2P5CCV5\|A0A2P5CCV5_PARAD	3.9e-120	67.99	Ribosomal protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_163830 PE=3 SV=...	[more]
tr\|A0A2P5FPU6\|A0A2P5FPU6_9ROSA	1.3e-118	67.38	Ribosomal protein OS=Trema orientalis OX=63057 GN=TorRG33x02_045510 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **INTERPRO**
Term	Definition
IPR009000	Transl_B-barrel_sf
IPR019926	Ribosomal_L3_CS
IPR019927	Ribosomal_L3_bac/org-type
IPR000597	Ribosomal_L3

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G015540.1	CsaV3_3G015540.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000597	Ribosomal protein L3	PFAM	PF00297	Ribosomal_L3	coord: 177..259 e-value: 6.3E-17 score: 61.5
IPR019927	Ribosomal protein L3, bacterial/organelle-type	TIGRFAM	TIGR03625	TIGR03625	coord: 81..282 e-value: 2.1E-76 score: 254.3
IPR019927	Ribosomal protein L3, bacterial/organelle-type	PANTHER	PTHR11229	50S RIBOSOMAL PROTEIN L3	coord: 48..308
IPR019927	Ribosomal protein L3, bacterial/organelle-type	HAMAP	MF_01325_B	Ribosomal_L3_B	coord: 79..285 score: 34.245
None	No IPR available	GENE3D	G3DSA:2.40.30.10		coord: 197..288 e-value: 7.0E-22 score: 79.5
None	No IPR available	GENE3D	G3DSA:2.40.50.620		coord: 111..174 e-value: 8.1E-20 score: 72.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 208..232
None	No IPR available	PANTHER	PTHR11229:SF0	39S RIBOSOMAL PROTEIN L3, MITOCHONDRIAL	coord: 48..308
IPR019926	Ribosomal protein L3, conserved site	PROSITE	PS00474	RIBOSOMAL_L3	coord: 179..202
IPR009000	Translation protein, beta-barrel domain superfamily	SUPERFAMILY	SSF50447	Translation proteins	coord: 75..305

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_3G015540	CSPI03G15360	Wild cucumber (PI 183967)	cpicucB144
CsaV3_3G015540	Cucsa.252160	Cucumber (Gy14) v1	cgycucB387
CsaV3_3G015540	CmoCh06G015820	Cucurbita moschata (Rifu)	cmocucB0953
CsaV3_3G015540	Cp4.1LG08g05500	Cucurbita pepo (Zucchini)	cpecucB1056
CsaV3_3G015540	CsGy3G015430	Cucumber (Gy14) v2	cgybcucB117
CsaV3_3G015540	Carg25657	Silver-seed gourd	carcucB0777
CsaV3_3G015540	Cla021829	Watermelon (97103) v1	cucwmB239
CsaV3_3G015540	MELO3C006752	Melon (DHL92) v3.5.1	cucmeB236
CsaV3_3G015540	ClCG05G006870	Watermelon (Charleston Gray)	cucwcgB225
CsaV3_3G015540	Lsi05G013850	Bottle gourd (USVL1VR-Ls)	cuclsiB245
CsaV3_3G015540	MELO3C006752.2	Melon (DHL92) v3.6.1	cucmedB230
CsaV3_3G015540	Cla97C05G088510	Watermelon (97103) v2	cucwmbB206
CsaV3_3G015540	Bhi01G000820	Wax gourd	cucwgoB272

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_3G015540	Silver-seed gourd	carcucB0079
CsaV3_3G015540	Silver-seed gourd	carcucB0309
CsaV3_3G015540	Cucurbita maxima (Rimu)	cmacucB0291
CsaV3_3G015540	Cucurbita maxima (Rimu)	cmacucB0425
CsaV3_3G015540	Cucurbita maxima (Rimu)	cmacucB0965
CsaV3_3G015540	Cucurbita moschata (Rifu)	cmocucB0283
CsaV3_3G015540	Cucurbita moschata (Rifu)	cmocucB0420
CsaV3_3G015540	Cucurbita pepo (Zucchini)	cpecucB0154
CsaV3_3G015540	Cucurbita pepo (Zucchini)	cpecucB0759
CsaV3_3G015540	Bottle gourd (USVL1VR-Ls)	cuclsiB163
CsaV3_3G015540	Bottle gourd (USVL1VR-Ls)	cuclsiB229
CsaV3_3G015540	Melon (DHL92) v3.5.1	cucmeB176
CsaV3_3G015540	Melon (DHL92) v3.6.1	cucmedB167
CsaV3_3G015540	Watermelon (Charleston Gray)	cucwcgB254
CsaV3_3G015540	Wax gourd	cucwgoB257