ClCG05G006870 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG05G006870
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	50S ribosomal protein l3
Location	CG_Chr05 : 6981736 .. 6986344 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTAAACCCCTAGTCGCCGACTGCTGCCGCTCCCCTCTCCATTACACTTCATCAGCTGCATAACACATCGAGAAAGATAATGAAATTCCAGAGTCTCCAAGGTCGAAATCGGCCCTAAAATCTGAATCAAATCCCTCGTCTTCCTCGCTGATCTTTCCCCATTTCGTGTCGTAATCGTTGTGATTTGTCCTCACCATGTCAGCTTTATCCAGAGGTCTCATTTCTCGTCTTCGTCTTCTCTCGATCAATTCCGGCACTTCTCATACAAGTATTTCTTCTTCTTCTTCAAGGACAAATGCGTCTTGTTACTATTTCGCCCGTGCTTTCAGTACCCAGGATTTGATCCAGGCCAGCGATGGGTCTTTGTCATCTTCTTCGATTATTGAAGCTAAACCTGGTGTTATGGCCCCTAACTCGAAGCGGACGGGTGTTATTGCCGTCAAGTGTGGAATGTCGGCGCTGTGGGATAAATGGGGAGCTAGGATACCCGTCACTGTGCTCTGGGTTGATGATAATATTGTTTCACAGGTCAAGACCATTGAGAAAGAAGGTATCACAGCTCTCCAGGTACTGTTCAAATCTCTTCTTCTCATTTTTATTCCGTTAGTGGAGTATTTATTATTATTTTTAGTTGTCGTTGCTACTTAGATGAAATTAGGAGCATGACTGAAAACTAGAAAACCGACATTTCTTGCCTTGGCATTGTTAGTTTCTATCTCGCAGCCGTAGAACCAAAGAAAGCAGGAATGAAATGGGATTTTGGCTTAATGATGTTGAGGAGTCTATTTTTGGCCTAATGATATTCTTTTGGACTGGGGTCCTTGTCTGTAGTTAGTGTCGAACTCTCTGTTTTTGTTGGACCTTTTTTTTTTTTTTTGAGCTCTTGTATATTCTTTCACTTGTCTCAATGTAGGTGTGGTTCCTTACTGATATATATTCTCTTACGTGAGAGGGATTTGAAGCTGTTGTTTTGGCTTCCCACACTTTCAATTCCATGGGTTTTGTTATTATACTGAACAGAACTGTTGCACATTGTTGTTTTGGACCAGAATTTCACCAGCTCCTATCATCTCATCACTTCCATCCATACACTTAGCTAGACATAACCATTTGTGGCTTTTTAAATTACAATAACTGTGGTATTGAGGTTGATGGTTGTACTCCTTGCATCATGTTCATGGCCAATCCCACTAATCTTCGGAAGATTTTCACCCACCCAATACTAACTTTGAAAGACAACTAGAGTTTTAGATATTGGTAAAATTTATACCTGGTGTTGATTTCACTCTTTCTAAAGAAAATACCAATTGTCTCCTCCATTAAACCATATGTTTAGGGTTCTTTTTTCTTTTTCAGTTCTTACATATTTTATTTCCTACAACTTGAATTTATTGACCAAAGGTGCTATGGTATGGTGCTAGTTAGATTGGCTGTGGACAGAAGAAGGCGAAGCATTTGACAAAACCTGAGTTAGGCCATTTTAGGGCTCAAGGTGTTCCATTAAAAAGGAAATTGAAGGAGTTCCCGGTGTCAGAAGATGCACTTCTTCCAGTTGGTACAGCAATTGGCGTTCGTCATTTTGTTCCTGGACAGTATGTTGATGTGACAGGAATAACTACAGGGAAAGGTTTTCAGGTGAATCCATTGAACCATTTTTTTTTTTGATAAGAAACAATTTCATTGATGAATGAAATATCCAAAGATTCATTCAATTCCTTATATTTGGCATTATGGTTAAGTCAGTTATGTATCAAAATTACTCAAACAGTAAAATGTTATCGTGGGAACATTGACTCATATAAATGTGTCTCTCTCTGAGTTTAGGTCAAAGTACCAATTAAAAGCTGTTTAATCATCAATGACAACTGAATGAACAGATCTATGAAATTGAACTGCAATAAGTGATAACTGTAAACTGGGCGCGTTTAAAAAACATTGTTGGTTCCTTTTCTCTTTCTTCCTTGGCATTGACATTTCTAGTCAATTATGTTCATCAACAGTATTCTGTATGTACTGATATTTCTTCCAGGGATTCTCAAATATGCTATTTTTAATCGTGGTAGCACTGCATAATGTGATATCAAGGACATGGACTATTGGCCTTTGCATCAACTTCAAGCAATACTGATGATGTCAGCCTTGTTATGTTTAACTACCCACAACTTTCTTTGATGTGCAACTTACAACTCAAACTTTAACTTATAGAGCAAGTCCAATCCAATTAAAGTATCAAGTTACATCAAATGAACATATAGGTGTAAGCGATCATATCTTTTAAAACAAAAACCACCCAAATAACAAAGAATGCGAAAACCACAATAGTAGAGATCTGTAGTTCAAAACTCAAGTGAACAACCTCATGGTATCCTACTAATAACTAAACTCCAAAATCTAAAATGTCCATTGAAGAGTCAAAATGAGAGTTTTAGCAGAAACAATTATTGGACAAGTTATGTATCTTGTTTGTCATTGTCAGATTCCAATTTGTATCATTGCAATCCTTACTTTGGGTTATGGGCATTATAATAGATTTAGTAAGCAGTAAGCAAATATTTACATGATTCTCAAACATAAGCATGCTTAATTACCTGACTTGCTGCATGGTCTGCAAGATACAATTTAACCATCAAAGTTACACCGAGATATACGTGTTTATCATAAGATAACACGAACAATTTCTCGATTAGATTATGTGCATCCTGGAGACAAAAATAATAAAAAAAACACAATTCATATATATAAGCATACAGAAAAAAAAATATATAAGGGAGCTAACCCCTTTGAAAGCTGTGATCTTTGCTTTGTCTTCTTTCATGTTTGTGCTAATTTGGCTAATATCAAGTTGTATATTTGTGTCCTGAAAATTTTTCATGAGATCTTGAATAATCATAACAAAATTGTTTCCTTACCTTGTGTAAATGGTATAAAATATTTTCCATGAAAACAATGTCTCTCATTGCTAATCCTTTTTCTAATTGTGCTCAGGGAGTGATGAAAAGGCATGGTTTTTCAGGAATGCCGGCATCCCACGGAGCATCACTATCCCATAGAAGTGGTGGTTCTACGGGTCAGAGGGATGCTCCTGGAAAGGTGCGTTTATCTTTCCTTGGTGGTATTCATTTTTATGATTGAGTGGTATCTTGGTTCTTCATTGTACTTTAGAGCTGCCTGAAACTCACAATTGAGATAGTAGAGAAGTTGTAGTAGTATATACCGGTAGCCTACTAGGTCGCTTCTGATTCTCAGAGTATTGCAAGGCTCCTGAATGAATGGTAATTTCATAGAAGAGAAATAAGAATTGACTGGGAGCATATAGTTACAAAACAAGTATGAATAACTTGCATGGTGAAAGTTTATTCACATAATTCCACCCTGGACAGTTTACGGATGTCACTCTGCTTGTGGAATGAATTAGTATCGAGTAACATGTGGAAATTTTCATTGGTTACAATCTTGAAAATAATATTCTTTCTGTTGGTCTATTCCTGGTGAAGCTTTAATATTTACGAAGTTTGAATAGCCTTATACTCTTGAACCCTCTTTCAAATACTGACCTGTTATTCTACAGTTCCGTGATTCAATAGAATATACTTGGAGTTCTGTCAGATTTGCTTTGCATAGGGAACCGTGGAAACTTTTATATCGAATCTTAGAAGCTTGTCCCTGTTTCTAAATAACAGAAAAAAGAAAATCCAAAGTGTGGAATAATTTTTTATGATCTGTTAATAGTGAGTTCTAGTCCGTTTTCATTGTATTCCATGTAATTTATGATAGTGAGAAACATGCGGTTATTTTGCAGGTCTTCAAAGGTAGAAAGATGGCTGGGCGCATGGGTGGGAAGCAGAGAACTGTGAAAAATGTGTGGATATACAAAATTGATCCTGCAAGAAACTTGATATGGGTGAGAGGACAAGTAAGTTTCTTCTAAAACCAAATTTCAAACTCTTGATCTGATCCTTATACTTGAGTCCTTGTTATATACATCAATATCATATACTCTTGGGACATCATGGTCTGAGGCTTTTGCTGCCCATAACTCCACCTTTTCTTTAGGTCCCTGGCACCGAAGGAAACTTTGTATTTATAAAGGATGCTGTCTACAAGAAACTCAATAAGTCGGTTCTTCCATTTCCTACGTACTTTGCAGCTGACAACGAGGACACAGAGAAGTTGGAACCTCTTGTTGCTGATCTTGGAGAAGTAGATCCATTTATGGTTGGAGATTGATTAGGAGTTGCCCTTCAAAGCAAGTTGTGGAATATGCTCTGCTTTTTTCTTCTATTGATGGTGTATGCAGGTTTGCTTATTGACAACCCTTATGAGTAGTCAATTTCATTATAGAAATGCAGTCGGAGGATCTGTACAAGGCGATCCAATCTCTGATCCAATCCCCGGTCCAATCTCCTAATGAGATGGGAATCTATTGTTACATTTTTCTTTTTAAAAATTTTCTCACCATCTCAAACCTGTACCGGAAAATACCATTTTGAAATAAAGATTAAGGGAAAAAAAAGCTATGGTGATTGAGAATTTTTTGTTGAGTGATCTTATAATTTCTTTTGGGTTGGACTTAATGTTTATGTGAACTTAGAGGAAGAGATTATTCATGG

mRNA sequence

CTAAACCCCTAGTCGCCGACTGCTGCCGCTCCCCTCTCCATTACACTTCATCAGCTGCATAACACATCGAGAAAGATAATGAAATTCCAGAGTCTCCAAGGTCGAAATCGGCCCTAAAATCTGAATCAAATCCCTCGTCTTCCTCGCTGATCTTTCCCCATTTCGTGTCGTAATCGTTGTGATTTGTCCTCACCATGTCAGCTTTATCCAGAGGTCTCATTTCTCGTCTTCGTCTTCTCTCGATCAATTCCGGCACTTCTCATACAAGTATTTCTTCTTCTTCTTCAAGGACAAATGCGTCTTGTTACTATTTCGCCCGTGCTTTCAGTACCCAGGATTTGATCCAGGCCAGCGATGGGTCTTTGTCATCTTCTTCGATTATTGAAGCTAAACCTGGTGTTATGGCCCCTAACTCGAAGCGGACGGGTGTTATTGCCGTCAAGTGTGGAATGTCGGCGCTGTGGGATAAATGGGGAGCTAGGATACCCGTCACTGTGCTCTGGGTTGATGATAATATTGTTTCACAGGTCAAGACCATTGAGAAAGAAGGTATCACAGCTCTCCAGATTGGCTGTGGACAGAAGAAGGCGAAGCATTTGACAAAACCTGAGTTAGGCCATTTTAGGGCTCAAGGTGTTCCATTAAAAAGGAAATTGAAGGAGTTCCCGGTGTCAGAAGATGCACTTCTTCCAGTTGGTACAGCAATTGGCGTTCGTCATTTTGTTCCTGGACAATTCCAATTTGTATCATTGCAATCCTTACTTTGGGTTATGGGCATTATAATAGATTTAGGAGTGATGAAAAGGCATGGTTTTTCAGGAATGCCGGCATCCCACGGAGCATCACTATCCCATAGAAGTGGTGGTTCTACGGGTCAGAGGGATGCTCCTGGAAAGGTCTTCAAAGGTAGAAAGATGGCTGGGCGCATGGGTGGGAAGCAGAGAACTGTGAAAAATGTGTGGATATACAAAATTGATCCTGCAAGAAACTTGATATGGGTGAGAGGACAAGTCCCTGGCACCGAAGGAAACTTTGTATTTATAAAGGATGCTGTCTACAAGAAACTCAATAAGTCGGTTCTTCCATTTCCTACGTACTTTGCAGCTGACAACGAGGACACAGAGAAGTTGGAACCTCTTGTTGCTGATCTTGGAGAAGTAGATCCATTTATGGTTGGAGATTGATTAGGAGTTGCCCTTCAAAGCAAGTTGTGGAATATGCTCTGCTTTTTTCTTCTATTGATGGTGTATGCAGGTTTGCTTATTGACAACCCTTATGAGTAGTCAATTTCATTATAGAAATGCAGTCGGAGGATCTGTACAAGGCGATCCAATCTCTGATCCAATCCCCGGTCCAATCTCCTAATGAGATGGGAATCTATTGTTACATTTTTCTTTTTAAAAATTTTCTCACCATCTCAAACCTGTACCGGAAAATACCATTTTGAAATAAAGATTAAGGGAAAAAAAAGCTATGGTGATTGAGAATTTTTTGTTGAGTGATCTTATAATTTCTTTTGGGTTGGACTTAATGTTTATGTGAACTTAGAGGAAGAGATTATTCATGG

Coding sequence (CDS)

ATGTCAGCTTTATCCAGAGGTCTCATTTCTCGTCTTCGTCTTCTCTCGATCAATTCCGGCACTTCTCATACAAGTATTTCTTCTTCTTCTTCAAGGACAAATGCGTCTTGTTACTATTTCGCCCGTGCTTTCAGTACCCAGGATTTGATCCAGGCCAGCGATGGGTCTTTGTCATCTTCTTCGATTATTGAAGCTAAACCTGGTGTTATGGCCCCTAACTCGAAGCGGACGGGTGTTATTGCCGTCAAGTGTGGAATGTCGGCGCTGTGGGATAAATGGGGAGCTAGGATACCCGTCACTGTGCTCTGGGTTGATGATAATATTGTTTCACAGGTCAAGACCATTGAGAAAGAAGGTATCACAGCTCTCCAGATTGGCTGTGGACAGAAGAAGGCGAAGCATTTGACAAAACCTGAGTTAGGCCATTTTAGGGCTCAAGGTGTTCCATTAAAAAGGAAATTGAAGGAGTTCCCGGTGTCAGAAGATGCACTTCTTCCAGTTGGTACAGCAATTGGCGTTCGTCATTTTGTTCCTGGACAATTCCAATTTGTATCATTGCAATCCTTACTTTGGGTTATGGGCATTATAATAGATTTAGGAGTGATGAAAAGGCATGGTTTTTCAGGAATGCCGGCATCCCACGGAGCATCACTATCCCATAGAAGTGGTGGTTCTACGGGTCAGAGGGATGCTCCTGGAAAGGTCTTCAAAGGTAGAAAGATGGCTGGGCGCATGGGTGGGAAGCAGAGAACTGTGAAAAATGTGTGGATATACAAAATTGATCCTGCAAGAAACTTGATATGGGTGAGAGGACAAGTCCCTGGCACCGAAGGAAACTTTGTATTTATAAAGGATGCTGTCTACAAGAAACTCAATAAGTCGGTTCTTCCATTTCCTACGTACTTTGCAGCTGACAACGAGGACACAGAGAAGTTGGAACCTCTTGTTGCTGATCTTGGAGAAGTAGATCCATTTATGGTTGGAGATTGA

Protein sequence

MSALSRGLISRLRLLSINSGTSHTSISSSSSRTNASCYYFARAFSTQDLIQASDGSLSSSSIIEAKPGVMAPNSKRTGVIAVKCGMSALWDKWGARIPVTVLWVDDNIVSQVKTIEKEGITALQIGCGQKKAKHLTKPELGHFRAQGVPLKRKLKEFPVSEDALLPVGTAIGVRHFVPGQFQFVSLQSLLWVMGIIIDLGVMKRHGFSGMPASHGASLSHRSGGSTGQRDAPGKVFKGRKMAGRMGGKQRTVKNVWIYKIDPARNLIWVRGQVPGTEGNFVFIKDAVYKKLNKSVLPFPTYFAADNEDTEKLEPLVADLGEVDPFMVGD

Homology

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BLAST of ClCG05G006870 vs. Swiss-Prot
Match: RK3B_ARATH (50S ribosomal protein L3-2, chloroplastic OS=Arabidopsis thaliana GN=RPL3B PE=2 SV=1)

HSP 1 Score: 441.8 bits (1135), Expect = 6.5e-123
Identity = 229/333 (68.77%), Postives = 263/333 (78.98%), Query Frame = 1


Query: 1   MSALSRGLISRL-RLLSINSGTSHTSISSSSSRTNASCYYFARAFSTQDLIQASDGSL-- 60
           M+A+ RGL+SR+ + LSI S T     SSS S  + S ++  R FS+   +    GS   
Sbjct: 1   MAAVPRGLLSRINQFLSIRSITP----SSSESLPHCSSFFLIRRFSSDTGLMDGGGSDII 60

Query: 61  -SSSSIIEAKPGVMAPNSKRTGVIAVKCGMSALWDKWGARIPVTVLWVDDNIVSQVKTIE 120
            + + IIEAK G M+  SKRTG+IAVKCGM+ALWDKWG RIP+++LWVDDNIVSQVKT+E
Sbjct: 61  GAQTRIIEAKQGEMSSRSKRTGIIAVKCGMTALWDKWGKRIPISILWVDDNIVSQVKTVE 120

Query: 121 KEGITALQIGCGQKKAKHLTKPELGHFRAQGVPLKRKLKEFPVSEDALLPVGTAIGVRHF 180
           KEGI ALQIGCGQKK KHL+K  +GHFRAQGVPLKRKL+EFPV+EDALLPVGT++GVRHF
Sbjct: 121 KEGIFALQIGCGQKKPKHLSKAVVGHFRAQGVPLKRKLREFPVTEDALLPVGTSLGVRHF 180

Query: 181 VPGQFQFVSLQSLLWVMGIIIDLGVMKRHGFSGMPASHGASLSHRSGGSTGQRDAPGKVF 240
           VPGQ+  V +  +    G     G MKRHGFSGMPASHGASLSHRSGGSTGQRDAPGKVF
Sbjct: 181 VPGQY--VDVTGITRGKGF---QGCMKRHGFSGMPASHGASLSHRSGGSTGQRDAPGKVF 240

Query: 241 KGRKMAGRMGGKQRTVKNVWIYKIDPARNLIWVRGQVPGTEGNFVFIKDAVYKKLNKSVL 300
           KGRKMAGRMG  QRTVKNVW+YKIDPARNL+WVRGQVPG EGNFVFIKDA  KK + S L
Sbjct: 241 KGRKMAGRMGADQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAWCKKPDISKL 300

Query: 301 PFPTYFAADNEDTEKLEPLVADLGEVDPFMVGD 330
           PFPTY A ++ED  +LEPLVADLGEVDPFM+ +
Sbjct: 301 PFPTYLAPEDEDPSELEPLVADLGEVDPFMLAE 324

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BLAST of ClCG05G006870 vs. Swiss-Prot
Match: RL3_ZYMMO (50S ribosomal protein L3 OS=Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) GN=rplC PE=3 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 1.2e-52
Identity = 117/243 (48.15%), Postives = 153/243 (62.96%), Query Frame = 1


Query: 76  RTGVIAVKCGMSALWDKWGARIPVTVLWVDDNIVSQVKTIEKEGITALQIGCGQKKAKHL 135
           RTGVIA K GM+ L+ + G  +PVTVL ++D  V  VK  +++G  A+Q+G G  KAK++
Sbjct: 2   RTGVIAKKVGMTRLFQEDGRHVPVTVLKLEDVQVVAVKNKDQDGYVAVQLGAGSAKAKNV 61

Query: 136 TKPELGHFRAQGVPLKRKLKEFPVSEDALLPVGTAIGVRHFVPGQFQFVSLQSLLWVMGI 195
           TKP  GHF    V LK KL EFPVSEDA+L VGT+I   HF+ GQ   +S Q+     G 
Sbjct: 62  TKPVRGHFAKAEVELKAKLVEFPVSEDAVLEVGTSISADHFIAGQLVDISGQT--QGKGF 121

Query: 196 IIDLGVMKRHGFSGMPASHGASLSHRSGGSTGQRDAPGKVFKGRKMAGRMGGKQRTVKNV 255
               G MKR GF G+ A+HG SLSHRS GSTG R  PG+VFK +KMAG MG +QRT +N+
Sbjct: 122 ---AGAMKRWGFGGLRATHGVSLSHRSHGSTGNRQDPGRVFKNKKMAGHMGARQRTQQNL 181

Query: 256 WIYKIDPARNLIWVRGQVPGTEGNFVFIKDAVYKKLNKSVLPFPTYFAADNEDTEKLEPL 315
            +   D  R+LI+VRG VPG++G ++ I+DAV K    +  P+P    A N +     P+
Sbjct: 182 EVISTDAERDLIFVRGSVPGSKGAWLIIRDAV-KVARPTDAPYPAAIKAANGNEAPAAPV 238

Query: 316 VAD 319
            A+
Sbjct: 242 AAE 238

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BLAST of ClCG05G006870 vs. Swiss-Prot
Match: RL3_GLUOX (50S ribosomal protein L3 OS=Gluconobacter oxydans (strain 621H) GN=rplC PE=3 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 4.3e-50
Identity = 112/224 (50.00%), Postives = 140/224 (62.50%), Query Frame = 1


Query: 76  RTGVIAVKCGMSALWDKWGARIPVTVLWVDDNIVSQVKTIEKEGITALQIGCGQKKAKHL 135
           RTG+IA K GM+ L+ + G  +PVTVL +D+  V   +T E++G TA+Q+G G  K K++
Sbjct: 2   RTGLIAKKLGMTRLFKEDGTHVPVTVLHLDNVEVVDARTNERDGYTAIQLGLGNAKVKNV 61

Query: 136 TKPELGHFRAQGVPLKRKLKEFPVSEDALLPVGTAIGVRHFVPGQFQFVSLQSLLWVMGI 195
           TK   GHF    V  KR L EF VSEDALL  GT +   HFV GQ   V+ QS       
Sbjct: 62  TKANRGHFARTKVEPKRHLAEFRVSEDALLEAGTKLSAAHFVVGQKVDVTGQSKGKGFA- 121

Query: 196 IIDLGVMKRHGFSGMPASHGASLSHRSGGSTGQRDAPGKVFKGRKMAGRMGGKQRTVKNV 255
               GVMKRH F+G+ ASHG S+SHRS GSTGQR  PGKVFKG+KMAG MG ++ T  N+
Sbjct: 122 ----GVMKRHNFAGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAGHMGDERVTTLNL 181

Query: 256 WIYKIDPARNLIWVRGQVPGTEGNFVFIKDAVYKKLNKSVLPFP 300
            I  +D  RNLI VRG +PG +   V I+DA+ KK   +  P+P
Sbjct: 182 EIAAVDEERNLIMVRGAIPGAKNGLVLIRDAI-KKARHADAPYP 219

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BLAST of ClCG05G006870 vs. Swiss-Prot
Match: RL3_RUEPO (50S ribosomal protein L3 OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) GN=rplC PE=3 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 2.1e-49
Identity = 111/224 (49.55%), Postives = 142/224 (63.39%), Query Frame = 1


Query: 76  RTGVIAVKCGMSALWDKWGARIPVTVLWVDDNIVSQVKTIEKEGITALQIGCGQKKAKHL 135
           R+G+IA K GM+ L+ + G +IPVTVL +D+  V   +T EK+G TA+Q+G G  K K +
Sbjct: 2   RSGIIAKKVGMTRLFMEDGKQIPVTVLQLDNLQVVAQRTTEKDGYTAVQLGAGTPKIKRV 61

Query: 136 TKPELGHFRAQGVPLKRKLKEFPVSEDALLPVGTAIGVRHFVPGQFQFVSLQSLLWVMGI 195
           +K   GHF AQ V  KRKL EF VSEDAL+ VG  I   HF+ GQ   VS  S+      
Sbjct: 62  SKAMRGHFAAQKVEPKRKLAEFRVSEDALIEVGAEISAEHFLTGQKVDVSGTSIGKGFA- 121

Query: 196 IIDLGVMKRHGFSGMPASHGASLSHRSGGSTGQRDAPGKVFKGRKMAGRMGGKQRTVKNV 255
               G MKRH F G+ ASHG S+SHRS GSTGQ   PG+VFKG+KMAG MG  + T +N+
Sbjct: 122 ----GAMKRHNFGGLRASHGVSISHRSHGSTGQCQDPGRVFKGKKMAGHMGAARVTTQNL 181

Query: 256 WIYKIDPARNLIWVRGQVPGTEGNFVFIKDAVYKKLNKSVLPFP 300
            + K D  R L++++G VPG +  +V +KDAV KK  +  LPFP
Sbjct: 182 EVVKTDAERGLVFIKGAVPGPKSGWVTVKDAVKKKAPEG-LPFP 219

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BLAST of ClCG05G006870 vs. Swiss-Prot
Match: RL3_NOVAD (50S ribosomal protein L3 OS=Novosphingobium aromaticivorans (strain DSM 12444 / F199) GN=rplC PE=3 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 1.1e-48
Identity = 107/236 (45.34%), Postives = 150/236 (63.56%), Query Frame = 1


Query: 76  RTGVIAVKCGMSALWDKWGARIPVTVLWVDDNIVSQVKTIEKEGITALQIGCGQKKAKHL 135
           RTGVIA K GM+ L+ + G  +PVTVL +++  V  V+T E++G  ALQ+G G+ K K++
Sbjct: 2   RTGVIAKKVGMTRLFQEDGRHVPVTVLSLENCQVVSVRTAERDGYVALQLGAGEAKQKNV 61

Query: 136 TKPELGHFRAQGVPLKRKLKEFPVSEDALLPVGTAIGVRHFVPGQFQFVSLQSLLWVMGI 195
            KP+  HF    VPLK ++ EF V++DALL VG+ I   HFVPG  Q+V +       G 
Sbjct: 62  AKPQREHFAKAEVPLKMEVAEFRVADDALLDVGSTIAASHFVPG--QYVDITGQTQGKGF 121

Query: 196 IIDLGVMKRHGFSGMPASHGASLSHRSGGSTGQRDAPGKVFKGRKMAGRMGGKQRTVKNV 255
               G MKR GF GM A+HG S+SHR+ GSTG R  PG+VFK +KMAG MG +QRT +N+
Sbjct: 122 ---QGAMKRWGFGGMRATHGVSISHRAHGSTGNRQDPGRVFKNKKMAGHMGDRQRTQQNL 181

Query: 256 WIYKIDPARNLIWVRGQVPGTEGNFVFIKDAVYKKLNKSVLPFPTYF--AADNEDT 310
            + + D  R LI+V+G VPG++  ++ ++DAV K    +  P+P     AA++ D+
Sbjct: 182 EVVRTDDERGLIFVKGSVPGSKNAWLLVRDAV-KVSRHAEAPYPAGLKQAANSNDS 231

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BLAST of ClCG05G006870 vs. TrEMBL
Match: A0A0A0LAV0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171140 PE=3 SV=1)

HSP 1 Score: 555.8 bits (1431), Expect = 3.4e-155
Identity = 283/333 (84.98%), Postives = 296/333 (88.89%), Query Frame = 1


Query: 1   MSALSRGLISRLRLLSINSGTSH---TSISSSSSRTNASCYYFARAFSTQDLIQASDGSL 60
           MSALSRGLISR RLLSINS  SH   TS SSSSSRTNASCYYF RAFSTQDL QASDGSL
Sbjct: 1   MSALSRGLISRFRLLSINSSASHSITTSSSSSSSRTNASCYYFFRAFSTQDLTQASDGSL 60

Query: 61  SSSSIIEAKPGVMAPNSKRTGVIAVKCGMSALWDKWGARIPVTVLWVDDNIVSQVKTIEK 120
           S+SSI EAKPG M  NS RTGVIAVKCGMSALWDKWGARIP+TVLWVDDNIVSQVKTIEK
Sbjct: 61  SASSIFEAKPGTMGSNSTRTGVIAVKCGMSALWDKWGARIPITVLWVDDNIVSQVKTIEK 120

Query: 121 EGITALQIGCGQKKAKHLTKPELGHFRAQGVPLKRKLKEFPVSEDALLPVGTAIGVRHFV 180
           EGITALQIGCGQKK KHL+KPELGHFRAQGVPLKRKL+EFPVS+DALLPVGT IGVRHFV
Sbjct: 121 EGITALQIGCGQKKEKHLSKPELGHFRAQGVPLKRKLREFPVSQDALLPVGTEIGVRHFV 180

Query: 181 PGQFQFVSLQSLLWVMGIIIDLGVMKRHGFSGMPASHGASLSHRSGGSTGQRDAPGKVFK 240
           PG  Q+V +  +    G     GVMKRHGF GMPASHGASLSHRSGGSTGQRDAPGKVFK
Sbjct: 181 PG--QYVDVTGISRGKGF---QGVMKRHGFKGMPASHGASLSHRSGGSTGQRDAPGKVFK 240

Query: 241 GRKMAGRMGGKQRTVKNVWIYKIDPARNLIWVRGQVPGTEGNFVFIKDAVYKKLNKS-VL 300
           GRKMAGRMGGKQRTVKNVWIYKIDPARNL+WV+G +PG EGNFVFIKDAVYKKLNKS +L
Sbjct: 241 GRKMAGRMGGKQRTVKNVWIYKIDPARNLMWVKGPIPGAEGNFVFIKDAVYKKLNKSAIL 300

Query: 301 PFPTYFAADNEDTEKLEPLVADLGEVDPFMVGD 330
           PFPTYFA D EDT+KLEPLVADLGEVDPFM GD
Sbjct: 301 PFPTYFATDGEDTDKLEPLVADLGEVDPFMTGD 328

[Close]

BLAST of ClCG05G006870 vs. TrEMBL
Match: E5GC40_CUCME (50S ribosomal protein l3 OS=Cucumis melo subsp. melo PE=3 SV=1)

HSP 1 Score: 555.1 bits (1429), Expect = 5.9e-155
Identity = 281/333 (84.38%), Postives = 299/333 (89.79%), Query Frame = 1


Query: 1   MSALSRGLISRLRLLSINSGTSHTSIS---SSSSRTNASCYYFARAFSTQDLIQASDGSL 60
           MSALSRGLISRLRLLSINSG SH+  S   SSSSRTNASCYYF RAFSTQDL QASDGSL
Sbjct: 1   MSALSRGLISRLRLLSINSGASHSVTSSSYSSSSRTNASCYYFFRAFSTQDLTQASDGSL 60

Query: 61  SSSSIIEAKPGVMAPNSKRTGVIAVKCGMSALWDKWGARIPVTVLWVDDNIVSQVKTIEK 120
            +SSIIEAKPG M+ NS+RTGVIAVKCGMSALWDKWGARIP+TVLWVDDNIVSQVKTIEK
Sbjct: 61  PASSIIEAKPGTMSSNSRRTGVIAVKCGMSALWDKWGARIPITVLWVDDNIVSQVKTIEK 120

Query: 121 EGITALQIGCGQKKAKHLTKPELGHFRAQGVPLKRKLKEFPVSEDALLPVGTAIGVRHFV 180
           EGITALQIGCGQKK KHL+KPELGHFRAQGVPLKRKLKEFPVS+DALLPVGT IG RHFV
Sbjct: 121 EGITALQIGCGQKKEKHLSKPELGHFRAQGVPLKRKLKEFPVSQDALLPVGTEIGARHFV 180

Query: 181 PGQFQFVSLQSLLWVMGIIIDLGVMKRHGFSGMPASHGASLSHRSGGSTGQRDAPGKVFK 240
           PG  Q+V +  +    G     GVMKRHGF GMPASHGASLSHRSGGSTGQRDAPGKVFK
Sbjct: 181 PG--QYVDVTGISRGKGF---QGVMKRHGFKGMPASHGASLSHRSGGSTGQRDAPGKVFK 240

Query: 241 GRKMAGRMGGKQRTVKNVWIYKIDPARNLIWVRGQVPGTEGNFVFIKDAVYKKLNKS-VL 300
           GRKMAGRMGGKQRTVKNVWIYKIDPARNLIWV+G +PG EG+FVFIKDA+YK+LNKS +L
Sbjct: 241 GRKMAGRMGGKQRTVKNVWIYKIDPARNLIWVKGPIPGAEGSFVFIKDAMYKRLNKSAIL 300

Query: 301 PFPTYFAADNEDTEKLEPLVADLGEVDPFMVGD 330
           PFPTYFA D EDT+KLEPLVADLGEVDPFM+GD
Sbjct: 301 PFPTYFATDGEDTDKLEPLVADLGEVDPFMIGD 328

[Close]

BLAST of ClCG05G006870 vs. TrEMBL
Match: M5XEE9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008555mg PE=3 SV=1)

HSP 1 Score: 477.2 bits (1227), Expect = 1.6e-131
Identity = 239/332 (71.99%), Postives = 280/332 (84.34%), Query Frame = 1


Query: 1   MSALSRGLISRLRLLSINSGTSHTSISSSSSRTNA---SCYYFARAFSTQDLIQASDGSL 60
           MSALSRGL+SRLRLLS+N  T+ ++ +++++ T +   + Y+F R F+++ L+ AS+ + 
Sbjct: 1   MSALSRGLLSRLRLLSLNPTTTSSAAAANANATTSFTQTQYHFFRWFNSEALVDASEVAE 60

Query: 61  SSSSIIEAKPGVMAPNSKRTGVIAVKCGMSALWDKWGARIPVTVLWVDDNIVSQVKTIEK 120
             S +IEAKPG M+P+SKRTG+IAVKCGM+A WDKWGAR+P+TVLWVDDNIVSQVKT EK
Sbjct: 61  ERSRVIEAKPGAMSPSSKRTGLIAVKCGMTARWDKWGARVPITVLWVDDNIVSQVKTPEK 120

Query: 121 EGITALQIGCGQKKAKHLTKPELGHFRAQGVPLKRKLKEFPVSEDALLPVGTAIGVRHFV 180
           EG  ALQIGCGQKKAKHLTK E+GHFRAQGVPLKRKL+EFPV++DALLPVG +IGVRHFV
Sbjct: 121 EGFPALQIGCGQKKAKHLTKSEVGHFRAQGVPLKRKLREFPVTKDALLPVGMSIGVRHFV 180

Query: 181 PGQFQFVSLQSLLWVMGIIIDLGVMKRHGFSGMPASHGASLSHRSGGSTGQRDAPGKVFK 240
           PGQ+  V +  +    G     G MKRHGF GMPASHGASLSHRS GSTGQRDAPGKVFK
Sbjct: 181 PGQY--VDVTGITRGKGF---QGGMKRHGFKGMPASHGASLSHRSIGSTGQRDAPGKVFK 240

Query: 241 GRKMAGRMGGKQRTVKNVWIYKIDPARNLIWVRGQVPGTEGNFVFIKDAVYKKLNKSVLP 300
           GRKMAGRMGGKQRTVKNVW+YKIDPARNL+WVRGQVPG EGNFVFI+DA YKK + S+LP
Sbjct: 241 GRKMAGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIRDAFYKKPDISLLP 300

Query: 301 FPTYFAADNEDTEKLEPLVADLGEVDPFMVGD 330
           FPTYFA ++ED  KLE LVADLGEVDPFMV D
Sbjct: 301 FPTYFAPEDEDATKLETLVADLGEVDPFMVAD 327

[Close]

BLAST of ClCG05G006870 vs. TrEMBL
Match: A9PFR0_POPTR (50S ribosomal protein L3-2 OS=Populus trichocarpa GN=POPTR_0008s21180g PE=2 SV=1)

HSP 1 Score: 460.3 bits (1183), Expect = 2.0e-126
Identity = 239/331 (72.21%), Postives = 263/331 (79.46%), Query Frame = 1


Query: 1   MSALSRGLISRL-RLLSINSGTSHTSISSSSSRTNASCYYFARAFSTQDLIQASDGSLSS 60
           MSALSRGLISRL R+LS NS T  T+ +          +Y  R FS   LI  S      
Sbjct: 1   MSALSRGLISRLYRILSANSRTPPTATTK---------FYLLRCFSADALIDGSQVEYHQ 60

Query: 61  SS-IIEAKPGVMAPNSKRTGVIAVKCGMSALWDKWGARIPVTVLWVDDNIVSQVKTIEKE 120
            S IIEAKPGVM PNSKRTGV+AVKCGM+ALWDKWGARIP+TVLWVDDNIVSQVKT+EKE
Sbjct: 61  QSRIIEAKPGVMTPNSKRTGVVAVKCGMTALWDKWGARIPITVLWVDDNIVSQVKTVEKE 120

Query: 121 GITALQIGCGQKKAKHLTKPELGHFRAQGVPLKRKLKEFPVSEDALLPVGTAIGVRHFVP 180
           G  ALQ+GCGQKK KHLTKPE+GHFRAQGVP+KRKL+EFPV+EDALLPVGT +GVRHFVP
Sbjct: 121 GFFALQVGCGQKKEKHLTKPEVGHFRAQGVPMKRKLREFPVTEDALLPVGTYVGVRHFVP 180

Query: 181 GQFQFVSLQSLLWVMGIIIDLGVMKRHGFSGMPASHGASLSHRSGGSTGQRDAPGKVFKG 240
           G  QFV +  +    G     G MKRHGF G PASHGASLSHRS GSTGQRDAPGKVFKG
Sbjct: 181 G--QFVDVAGITMGKGF---QGGMKRHGFKGGPASHGASLSHRSIGSTGQRDAPGKVFKG 240

Query: 241 RKMAGRMGGKQRTVKNVWIYKIDPARNLIWVRGQVPGTEGNFVFIKDAVYKKLNKSVLPF 300
           +KM GRMGG QRTVKNVW+YKIDPARNL+WV+GQVPG EGNFVFIKD+VYKK +  +LPF
Sbjct: 241 KKMPGRMGGVQRTVKNVWVYKIDPARNLMWVKGQVPGAEGNFVFIKDSVYKKPDIQMLPF 300

Query: 301 PTYFAADNEDTEKLEPLVADLGEVDPFMVGD 330
           PTYF A  ED +  EPLVADLGEVDPFMV D
Sbjct: 301 PTYFGA--EDDDNAEPLVADLGEVDPFMVAD 315

[Close]

BLAST of ClCG05G006870 vs. TrEMBL
Match: A0A067K860_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19089 PE=3 SV=1)

HSP 1 Score: 459.9 bits (1182), Expect = 2.6e-126
Identity = 237/330 (71.82%), Postives = 267/330 (80.91%), Query Frame = 1


Query: 1   MSALSRGLISRLR-LLSINSGTSHTSISSSSSRTNASCYYFARAFSTQDLIQASDGSLSS 60
           MSA SRGL+SR   LLS+++ T+  S +SS        YYF R FST  L+   +     
Sbjct: 1   MSAQSRGLVSRFHHLLSLSTKTTSPSAASS-------LYYFVRRFSTDSLLDGYEIQNRE 60

Query: 61  SSIIEAKPGVMAPNSKRTGVIAVKCGMSALWDKWGARIPVTVLWVDDNIVSQVKTIEKEG 120
           S IIE KPG+M PNSKRTG+IA+KCGMSALWDKWG RIP+TVLWVDDNIV+QVKT+EKEG
Sbjct: 61  SRIIEPKPGIMTPNSKRTGLIALKCGMSALWDKWGERIPITVLWVDDNIVTQVKTVEKEG 120

Query: 121 ITALQIGCGQKKAKHLTKPELGHFRAQGVPLKRKLKEFPVSEDALLPVGTAIGVRHFVPG 180
             ALQIG GQKKAKHLTKPE+GHFRAQ VPLKRKLKEFPV+EDALLPVGT+IGVRHFVPG
Sbjct: 121 HFALQIGYGQKKAKHLTKPEVGHFRAQDVPLKRKLKEFPVTEDALLPVGTSIGVRHFVPG 180

Query: 181 QFQFVSLQSLLWVMGIIIDLGVMKRHGFSGMPASHGASLSHRSGGSTGQRDAPGKVFKGR 240
             QFV +  +    G     GVMKRHGF GMPASHGASLSHRS GSTGQRDAPGKVFKG+
Sbjct: 181 --QFVDVTGITRGKGF---QGVMKRHGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGK 240

Query: 241 KMAGRMGGKQRTVKNVWIYKIDPARNLIWVRGQVPGTEGNFVFIKDAVYKKLNKSVLPFP 300
           KM GRMG +QRTVKNVW+YKIDPARNL+WVRGQVPG EGNFVFIKDAVYKK + S+LPFP
Sbjct: 241 KMPGRMGAEQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAVYKKPDVSMLPFP 300

Query: 301 TYFAADNEDTEKLEPLVADLGEVDPFMVGD 330
           TYFAA++E +   EPLVA+LGE+DPFM  D
Sbjct: 301 TYFAAEDETS---EPLVAELGEIDPFMAAD 315

[Close]

BLAST of ClCG05G006870 vs. TAIR10
Match: AT3G17465.1 (AT3G17465.1 ribosomal protein L3 plastid)

HSP 1 Score: 441.8 bits (1135), Expect = 3.7e-124
Identity = 229/333 (68.77%), Postives = 263/333 (78.98%), Query Frame = 1


Query: 1   MSALSRGLISRL-RLLSINSGTSHTSISSSSSRTNASCYYFARAFSTQDLIQASDGSL-- 60
           M+A+ RGL+SR+ + LSI S T     SSS S  + S ++  R FS+   +    GS   
Sbjct: 1   MAAVPRGLLSRINQFLSIRSITP----SSSESLPHCSSFFLIRRFSSDTGLMDGGGSDII 60

Query: 61  -SSSSIIEAKPGVMAPNSKRTGVIAVKCGMSALWDKWGARIPVTVLWVDDNIVSQVKTIE 120
            + + IIEAK G M+  SKRTG+IAVKCGM+ALWDKWG RIP+++LWVDDNIVSQVKT+E
Sbjct: 61  GAQTRIIEAKQGEMSSRSKRTGIIAVKCGMTALWDKWGKRIPISILWVDDNIVSQVKTVE 120

Query: 121 KEGITALQIGCGQKKAKHLTKPELGHFRAQGVPLKRKLKEFPVSEDALLPVGTAIGVRHF 180
           KEGI ALQIGCGQKK KHL+K  +GHFRAQGVPLKRKL+EFPV+EDALLPVGT++GVRHF
Sbjct: 121 KEGIFALQIGCGQKKPKHLSKAVVGHFRAQGVPLKRKLREFPVTEDALLPVGTSLGVRHF 180

Query: 181 VPGQFQFVSLQSLLWVMGIIIDLGVMKRHGFSGMPASHGASLSHRSGGSTGQRDAPGKVF 240
           VPGQ+  V +  +    G     G MKRHGFSGMPASHGASLSHRSGGSTGQRDAPGKVF
Sbjct: 181 VPGQY--VDVTGITRGKGF---QGCMKRHGFSGMPASHGASLSHRSGGSTGQRDAPGKVF 240

Query: 241 KGRKMAGRMGGKQRTVKNVWIYKIDPARNLIWVRGQVPGTEGNFVFIKDAVYKKLNKSVL 300
           KGRKMAGRMG  QRTVKNVW+YKIDPARNL+WVRGQVPG EGNFVFIKDA  KK + S L
Sbjct: 241 KGRKMAGRMGADQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAWCKKPDISKL 300

Query: 301 PFPTYFAADNEDTEKLEPLVADLGEVDPFMVGD 330
           PFPTY A ++ED  +LEPLVADLGEVDPFM+ +
Sbjct: 301 PFPTYLAPEDEDPSELEPLVADLGEVDPFMLAE 324

[Close]

BLAST of ClCG05G006870 vs. TAIR10
Match: AT2G43030.1 (AT2G43030.1 Ribosomal protein L3 family protein)

HSP 1 Score: 124.0 bits (310), Expect = 1.7e-28
Identity = 84/241 (34.85%), Postives = 126/241 (52.28%), Query Frame = 1


Query: 58  SSSSIIEAKPG----VMAPNSKRTGVIAVKCGMSALWDKWGARIPVTVL-WVDDNIVSQV 117
           SSS +I++ P     V +      GV+  K GM + +++ G  +PVTV+ + + NIV+Q+
Sbjct: 33  SSSLLIKSSPKTRFVVSSSMEAGIGVMGSKLGMMSFFEEDGTVVPVTVVGFREGNIVTQI 92

Query: 118 KTIEKEGITALQIGCGQKKAKHLTKPELGHFRAQGVPLKRKLKEFPVSEDALLPVGTAIG 177
           KT+  +G  A+QIG  + + K LTKPE GH +  G    R L+EF ++            
Sbjct: 93  KTLATDGYDAVQIGYRRVRDKKLTKPETGHLQKAGTIPMRHLQEFRLTN----------- 152

Query: 178 VRHFVPGQF----QFVSLQSLLWVMGIIIDLGV---MKRHGFSGMPASHGASLSHRSGGS 237
           +  F P Q     +      L+ V G  I  G    +KRH F     +HG S SHR+ GS
Sbjct: 153 IEGFEPNQKLVFDEIFKEGDLVDVAGTTIGKGFQGGIKRHHFKRGQMTHG-SKSHRALGS 212

Query: 238 TGQRDAPGKVFKGRKMAGRMGGKQRTVKNVWIYKIDPARNLIWVRGQVPGTEGNFVFIKD 287
            G    PG+V+KG+KM GRMGG +  ++ + I K+D   N++ ++G +PG  GN + I  
Sbjct: 213 IGAGTTPGRVYKGKKMPGRMGGTRTKIRKLKIVKVDKELNVVMIKGALPGKPGNLLRITP 261

[Close]

BLAST of ClCG05G006870 vs. NCBI nr
Match: gi|449459792|ref|XP_004147630.1| (PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Cucumis sativus])

HSP 1 Score: 555.8 bits (1431), Expect = 4.9e-155
Identity = 283/333 (84.98%), Postives = 296/333 (88.89%), Query Frame = 1


Query: 1   MSALSRGLISRLRLLSINSGTSH---TSISSSSSRTNASCYYFARAFSTQDLIQASDGSL 60
           MSALSRGLISR RLLSINS  SH   TS SSSSSRTNASCYYF RAFSTQDL QASDGSL
Sbjct: 1   MSALSRGLISRFRLLSINSSASHSITTSSSSSSSRTNASCYYFFRAFSTQDLTQASDGSL 60

Query: 61  SSSSIIEAKPGVMAPNSKRTGVIAVKCGMSALWDKWGARIPVTVLWVDDNIVSQVKTIEK 120
           S+SSI EAKPG M  NS RTGVIAVKCGMSALWDKWGARIP+TVLWVDDNIVSQVKTIEK
Sbjct: 61  SASSIFEAKPGTMGSNSTRTGVIAVKCGMSALWDKWGARIPITVLWVDDNIVSQVKTIEK 120

Query: 121 EGITALQIGCGQKKAKHLTKPELGHFRAQGVPLKRKLKEFPVSEDALLPVGTAIGVRHFV 180
           EGITALQIGCGQKK KHL+KPELGHFRAQGVPLKRKL+EFPVS+DALLPVGT IGVRHFV
Sbjct: 121 EGITALQIGCGQKKEKHLSKPELGHFRAQGVPLKRKLREFPVSQDALLPVGTEIGVRHFV 180

Query: 181 PGQFQFVSLQSLLWVMGIIIDLGVMKRHGFSGMPASHGASLSHRSGGSTGQRDAPGKVFK 240
           PG  Q+V +  +    G     GVMKRHGF GMPASHGASLSHRSGGSTGQRDAPGKVFK
Sbjct: 181 PG--QYVDVTGISRGKGF---QGVMKRHGFKGMPASHGASLSHRSGGSTGQRDAPGKVFK 240

Query: 241 GRKMAGRMGGKQRTVKNVWIYKIDPARNLIWVRGQVPGTEGNFVFIKDAVYKKLNKS-VL 300
           GRKMAGRMGGKQRTVKNVWIYKIDPARNL+WV+G +PG EGNFVFIKDAVYKKLNKS +L
Sbjct: 241 GRKMAGRMGGKQRTVKNVWIYKIDPARNLMWVKGPIPGAEGNFVFIKDAVYKKLNKSAIL 300

Query: 301 PFPTYFAADNEDTEKLEPLVADLGEVDPFMVGD 330
           PFPTYFA D EDT+KLEPLVADLGEVDPFM GD
Sbjct: 301 PFPTYFATDGEDTDKLEPLVADLGEVDPFMTGD 328

[Close]

BLAST of ClCG05G006870 vs. NCBI nr
Match: gi|659077038|ref|XP_008438999.1| (PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Cucumis melo])

HSP 1 Score: 555.1 bits (1429), Expect = 8.4e-155
Identity = 281/333 (84.38%), Postives = 299/333 (89.79%), Query Frame = 1


Query: 1   MSALSRGLISRLRLLSINSGTSHTSIS---SSSSRTNASCYYFARAFSTQDLIQASDGSL 60
           MSALSRGLISRLRLLSINSG SH+  S   SSSSRTNASCYYF RAFSTQDL QASDGSL
Sbjct: 1   MSALSRGLISRLRLLSINSGASHSVTSSSYSSSSRTNASCYYFFRAFSTQDLTQASDGSL 60

Query: 61  SSSSIIEAKPGVMAPNSKRTGVIAVKCGMSALWDKWGARIPVTVLWVDDNIVSQVKTIEK 120
            +SSIIEAKPG M+ NS+RTGVIAVKCGMSALWDKWGARIP+TVLWVDDNIVSQVKTIEK
Sbjct: 61  PASSIIEAKPGTMSSNSRRTGVIAVKCGMSALWDKWGARIPITVLWVDDNIVSQVKTIEK 120

Query: 121 EGITALQIGCGQKKAKHLTKPELGHFRAQGVPLKRKLKEFPVSEDALLPVGTAIGVRHFV 180
           EGITALQIGCGQKK KHL+KPELGHFRAQGVPLKRKLKEFPVS+DALLPVGT IG RHFV
Sbjct: 121 EGITALQIGCGQKKEKHLSKPELGHFRAQGVPLKRKLKEFPVSQDALLPVGTEIGARHFV 180

Query: 181 PGQFQFVSLQSLLWVMGIIIDLGVMKRHGFSGMPASHGASLSHRSGGSTGQRDAPGKVFK 240
           PG  Q+V +  +    G     GVMKRHGF GMPASHGASLSHRSGGSTGQRDAPGKVFK
Sbjct: 181 PG--QYVDVTGISRGKGF---QGVMKRHGFKGMPASHGASLSHRSGGSTGQRDAPGKVFK 240

Query: 241 GRKMAGRMGGKQRTVKNVWIYKIDPARNLIWVRGQVPGTEGNFVFIKDAVYKKLNKS-VL 300
           GRKMAGRMGGKQRTVKNVWIYKIDPARNLIWV+G +PG EG+FVFIKDA+YK+LNKS +L
Sbjct: 241 GRKMAGRMGGKQRTVKNVWIYKIDPARNLIWVKGPIPGAEGSFVFIKDAMYKRLNKSAIL 300

Query: 301 PFPTYFAADNEDTEKLEPLVADLGEVDPFMVGD 330
           PFPTYFA D EDT+KLEPLVADLGEVDPFM+GD
Sbjct: 301 PFPTYFATDGEDTDKLEPLVADLGEVDPFMIGD 328

[Close]

BLAST of ClCG05G006870 vs. NCBI nr
Match: gi|1009163611|ref|XP_015900059.1| (PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 484.2 bits (1245), Expect = 1.8e-133
Identity = 237/330 (71.82%), Postives = 282/330 (85.45%), Query Frame = 1


Query: 1   MSALSRGLISRLRLLSINSGTSHTSISSSS-SRTNASCYYFARAFSTQDLIQASDGSLSS 60
           MSALSRGL+SR+RLLS+N   + T+ +++S S +  + Y+F+R FS++ L+ A++ +   
Sbjct: 1   MSALSRGLLSRIRLLSLNPPATCTATTTTSFSSSTPALYHFSRRFSSESLLDATEIASQP 60

Query: 61  SSIIEAKPGVMAPNSKRTGVIAVKCGMSALWDKWGARIPVTVLWVDDNIVSQVKTIEKEG 120
           + IIEA+PG M PNSKRTG+IAVKCGMSALWDKWGAR+P+TVLWVDDNIVSQVKTI+K+ 
Sbjct: 61  TRIIEARPGAMTPNSKRTGLIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIDKDC 120

Query: 121 ITALQIGCGQKKAKHLTKPELGHFRAQGVPLKRKLKEFPVSEDALLPVGTAIGVRHFVPG 180
            TALQIGCG KKAKHLTKPE+GHFRAQ VPLKRKL+EFPV++DALLPVGT++GVRHFVPG
Sbjct: 121 TTALQIGCGHKKAKHLTKPEVGHFRAQDVPLKRKLREFPVTDDALLPVGTSLGVRHFVPG 180

Query: 181 QFQFVSLQSLLWVMGIIIDLGVMKRHGFSGMPASHGASLSHRSGGSTGQRDAPGKVFKGR 240
             QFV +  +    G     GVMKRHGF G PASHGASLSHRSGGSTGQRDAPGKVFKGR
Sbjct: 181 --QFVDVTGITRGKGF---QGVMKRHGFKGGPASHGASLSHRSGGSTGQRDAPGKVFKGR 240

Query: 241 KMAGRMGGKQRTVKNVWIYKIDPARNLIWVRGQVPGTEGNFVFIKDAVYKKLNKSVLPFP 300
           KM GRMG +QRTVKNVW+YKIDPARNL+WV+GQVPG +GNFVFIKD+VYKK N S+LPFP
Sbjct: 241 KMPGRMGAQQRTVKNVWVYKIDPARNLMWVKGQVPGAKGNFVFIKDSVYKKPNISMLPFP 300

Query: 301 TYFAADNEDTEKLEPLVADLGEVDPFMVGD 330
           TYFAA++EDT +LEP++ADLGEVDPFM  D
Sbjct: 301 TYFAAEDEDTAELEPMIADLGEVDPFMAAD 325

[Close]

BLAST of ClCG05G006870 vs. NCBI nr
Match: gi|645233773|ref|XP_008223504.1| (PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Prunus mume])

HSP 1 Score: 478.0 bits (1229), Expect = 1.3e-131
Identity = 237/329 (72.04%), Postives = 277/329 (84.19%), Query Frame = 1


Query: 1   MSALSRGLISRLRLLSINSGTSHTSISSSSSRTNASCYYFARAFSTQDLIQASDGSLSSS 60
           MSALSRGLISRLRLLS+N   +  + +++++    + Y+F R FS++ L++A++ +   S
Sbjct: 1   MSALSRGLISRLRLLSLNPTAAAAANANATTSFTQTQYHFFRWFSSEALVEAAEVAEERS 60

Query: 61  SIIEAKPGVMAPNSKRTGVIAVKCGMSALWDKWGARIPVTVLWVDDNIVSQVKTIEKEGI 120
            +IEAKPG M+P+SKRTG++AVKCGM+A WDKWGAR+P+TVLWVDDNIVSQVKT EKEG 
Sbjct: 61  RVIEAKPGAMSPSSKRTGLVAVKCGMTARWDKWGARVPITVLWVDDNIVSQVKTPEKEGF 120

Query: 121 TALQIGCGQKKAKHLTKPELGHFRAQGVPLKRKLKEFPVSEDALLPVGTAIGVRHFVPGQ 180
            ALQIGCGQKKAKHLTK E+GHFRAQGVPLKRKLKEFPV++DALLPVG +IGVRHFVPG 
Sbjct: 121 PALQIGCGQKKAKHLTKSEVGHFRAQGVPLKRKLKEFPVTKDALLPVGMSIGVRHFVPG- 180

Query: 181 FQFVSLQSLLWVMGIIIDLGVMKRHGFSGMPASHGASLSHRSGGSTGQRDAPGKVFKGRK 240
            Q+V +  +    G     G MKRHGF GMP SHGASLSHRS GSTGQRDAPGKVFKG+K
Sbjct: 181 -QYVDVTGITRGKGF---QGGMKRHGFKGMPESHGASLSHRSIGSTGQRDAPGKVFKGKK 240

Query: 241 MAGRMGGKQRTVKNVWIYKIDPARNLIWVRGQVPGTEGNFVFIKDAVYKKLNKSVLPFPT 300
           MAGRMGGKQRTVKNVW+YKIDPARNL+WVRGQVPG EGNFVFI+DA YKK + S+LPFPT
Sbjct: 241 MAGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIRDAFYKKPDISLLPFPT 300

Query: 301 YFAADNEDTEKLEPLVADLGEVDPFMVGD 330
           YFA ++ED  KLEPLVADLGEVDPFMV D
Sbjct: 301 YFAPEDEDATKLEPLVADLGEVDPFMVAD 324

[Close]

BLAST of ClCG05G006870 vs. NCBI nr
Match: gi|596145900|ref|XP_007222647.1| (hypothetical protein PRUPE_ppa008555mg [Prunus persica])

HSP 1 Score: 477.2 bits (1227), Expect = 2.2e-131
Identity = 239/332 (71.99%), Postives = 280/332 (84.34%), Query Frame = 1


Query: 1   MSALSRGLISRLRLLSINSGTSHTSISSSSSRTNA---SCYYFARAFSTQDLIQASDGSL 60
           MSALSRGL+SRLRLLS+N  T+ ++ +++++ T +   + Y+F R F+++ L+ AS+ + 
Sbjct: 1   MSALSRGLLSRLRLLSLNPTTTSSAAAANANATTSFTQTQYHFFRWFNSEALVDASEVAE 60

Query: 61  SSSSIIEAKPGVMAPNSKRTGVIAVKCGMSALWDKWGARIPVTVLWVDDNIVSQVKTIEK 120
             S +IEAKPG M+P+SKRTG+IAVKCGM+A WDKWGAR+P+TVLWVDDNIVSQVKT EK
Sbjct: 61  ERSRVIEAKPGAMSPSSKRTGLIAVKCGMTARWDKWGARVPITVLWVDDNIVSQVKTPEK 120

Query: 121 EGITALQIGCGQKKAKHLTKPELGHFRAQGVPLKRKLKEFPVSEDALLPVGTAIGVRHFV 180
           EG  ALQIGCGQKKAKHLTK E+GHFRAQGVPLKRKL+EFPV++DALLPVG +IGVRHFV
Sbjct: 121 EGFPALQIGCGQKKAKHLTKSEVGHFRAQGVPLKRKLREFPVTKDALLPVGMSIGVRHFV 180

Query: 181 PGQFQFVSLQSLLWVMGIIIDLGVMKRHGFSGMPASHGASLSHRSGGSTGQRDAPGKVFK 240
           PGQ+  V +  +    G     G MKRHGF GMPASHGASLSHRS GSTGQRDAPGKVFK
Sbjct: 181 PGQY--VDVTGITRGKGF---QGGMKRHGFKGMPASHGASLSHRSIGSTGQRDAPGKVFK 240

Query: 241 GRKMAGRMGGKQRTVKNVWIYKIDPARNLIWVRGQVPGTEGNFVFIKDAVYKKLNKSVLP 300
           GRKMAGRMGGKQRTVKNVW+YKIDPARNL+WVRGQVPG EGNFVFI+DA YKK + S+LP
Sbjct: 241 GRKMAGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIRDAFYKKPDISLLP 300

Query: 301 FPTYFAADNEDTEKLEPLVADLGEVDPFMVGD 330
           FPTYFA ++ED  KLE LVADLGEVDPFMV D
Sbjct: 301 FPTYFAPEDEDATKLETLVADLGEVDPFMVAD 327

The following BLAST results are available for this feature:

BLAST of ClCG05G006870 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RK3B_ARATH	6.5e-123	68.77	50S ribosomal protein L3-2, chloroplastic OS=Arabidopsis thaliana GN=RPL3B PE=2 ...	[more]
RL3_ZYMMO	1.2e-52	48.15	50S ribosomal protein L3 OS=Zymomonas mobilis subsp. mobilis (strain ATCC 31821 ...	[more]
RL3_GLUOX	4.3e-50	50.00	50S ribosomal protein L3 OS=Gluconobacter oxydans (strain 621H) GN=rplC PE=3 SV=...	[more]
RL3_RUEPO	2.1e-49	49.55	50S ribosomal protein L3 OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / ...	[more]
RL3_NOVAD	1.1e-48	45.34	50S ribosomal protein L3 OS=Novosphingobium aromaticivorans (strain DSM 12444 / ...	[more]

BLAST of ClCG05G006870 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAV0_CUCSA	3.4e-155	84.98	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171140 PE=3 SV=1	[more]
E5GC40_CUCME	5.9e-155	84.38	50S ribosomal protein l3 OS=Cucumis melo subsp. melo PE=3 SV=1	[more]
M5XEE9_PRUPE	1.6e-131	71.99	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008555mg PE=3 SV=1	[more]
A9PFR0_POPTR	2.0e-126	72.21	50S ribosomal protein L3-2 OS=Populus trichocarpa GN=POPTR_0008s21180g PE=2 SV=1	[more]
A0A067K860_JATCU	2.6e-126	71.82	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19089 PE=3 SV=1	[more]

BLAST of ClCG05G006870 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G17465.1	3.7e-124	68.77	ribosomal protein L3 plastid	[more]
AT2G43030.1	1.7e-28	34.85	Ribosomal protein L3 family protein	[more]

BLAST of ClCG05G006870 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449459792\|ref\|XP_004147630.1\|	4.9e-155	84.98	PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Cucumis sativus]	[more]
gi\|659077038\|ref\|XP_008438999.1\|	8.4e-155	84.38	PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Cucumis melo]	[more]
gi\|1009163611\|ref\|XP_015900059.1\|	1.8e-133	71.82	PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Ziziphus jujuba]	[more]
gi\|645233773\|ref\|XP_008223504.1\|	1.3e-131	72.04	PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Prunus mume]	[more]
gi\|596145900\|ref\|XP_007222647.1\|	2.2e-131	71.99	hypothetical protein PRUPE_ppa008555mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000597	Ribosomal_L3
IPR009000	Transl_B-barrel_sf
IPR019927	Ribosomal_L3_bac/org-type

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
cellular_component	GO:0030529	intracellular ribonucleoprotein complex
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG05G006870.1	ClCG05G006870.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000597	Ribosomal protein L3	PFAM	PF00297	Ribosomal_L3	coord: 200..261 score: 9.
IPR009000	Translation protein, beta-barrel domain	unknown	SSF50447	Translation proteins	coord: 71..301 score: 6.0
IPR019927	Ribosomal protein L3, bacterial/organelle-type	PANTHER	PTHR11229	50S RIBOSOMAL PROTEIN L3	coord: 62..326 score: 1.6E
IPR019927	Ribosomal protein L3, bacterial/organelle-type	TIGRFAMs	TIGR03625	TIGR03625	coord: 78..284 score: 4.1
None	No IPR available	GENE3D	G3DSA:2.40.30.10		coord: 238..291 score: 1.1E-5coord: 78..120 score: 1.
None	No IPR available	GENE3D	G3DSA:4.10.960.10		coord: 200..237 score: 6.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG05G006870	Csa3G171140	Cucumber (Chinese Long) v2	cuwcgB222
ClCG05G006870	MELO3C006752	Melon (DHL92) v3.5.1	mewcgB427
ClCG05G006870	Cla021829	Watermelon (97103) v1	wcgwmB286
ClCG05G006870	Cla97C05G088510	Watermelon (97103) v2	wcgwmbB229
ClCG05G006870	Bhi01G000820	Wax gourd	wcgwgoB426
ClCG05G006870	CSPI03G15360	Wild cucumber (PI 183967)	cpiwcgB226
ClCG05G006870	Cucsa.252160	Cucumber (Gy14) v1	cgywcgB451
ClCG05G006870	CmaCh06G015870	Cucurbita maxima (Rimu)	cmawcgB737
ClCG05G006870	CmoCh06G015820	Cucurbita moschata (Rifu)	cmowcgB743
ClCG05G006870	Cp4.1LG08g05500	Cucurbita pepo (Zucchini)	cpewcgB787
ClCG05G006870	CsGy3G015430	Cucumber (Gy14) v2	cgybwcgB203
ClCG05G006870	MELO3C006752.2	Melon (DHL92) v3.6.1	medwcgB416
ClCG05G006870	Carg25657	Silver-seed gourd	carwcgB0718
ClCG05G006870	CsaV3_3G015540	Cucumber (Chinese Long) v3	cucwcgB225

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG05G006870	Watermelon (Charleston Gray)	wcgwcgB160
ClCG05G006870	Cucurbita maxima (Rimu)	cmawcgB233
ClCG05G006870	Cucurbita moschata (Rifu)	cmowcgB219
ClCG05G006870	Cucurbita moschata (Rifu)	cmowcgB316
ClCG05G006870	Cucurbita pepo (Zucchini)	cpewcgB559
ClCG05G006870	Bottle gourd (USVL1VR-Ls)	lsiwcgB336
ClCG05G006870	Silver-seed gourd	carwcgB0072
ClCG05G006870	Silver-seed gourd	carwcgB0271