CSPI03G15360 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G15360
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	50S ribosomal protein l3
Location	Chr3 : 11466719 .. 11471348 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAACCCCTAAGGTGCATCCTGCTGCCGCTCCATCACACTGCATCAGTTGCATAACACAAGAGAGGAAGACAATGAAATTCCACAGTCTCGGAGATCGAGATCAACCCTAAAATTTGAACCAAACCCTTCTTCTTCCTATCTGATTTTTACCAACTTAGTATCATAATCGTTGTGATCGGTTCTCACCATGTCAGCTTTATCTAGAGGTCTCATTTCTCGTTTTCGTCTTCTCTCGATCAATTCAAGCGCTTCTCATTCAATTACTACTTCTTCTTCTTCTTCTTCTTCAAGGACAAATGCGTCCTGTTACTACTTCTTCCGTGCTTTCAGTACCCAGGATTTGACTCAGGCTAGCGATGGGTCTTTGTCAGCTTCTTCGATTTTTGAAGCTAAACCTGGTACTATGGGAAGTAACTCTACGCGGACGGGTGTTATTGCCGTCAAGTGTGGAATGTCGGCGTTGTGGGATAAATGGGGAGCTAGGATACCCATCACTGTGCTCTGGGTTGATGATAATATTGTGTCTCAGGTCAAGACCATTGAGAAAGAAGGTATCACAGCTCTACAGGTACTGTTCAAATCTCTTATTCTCATTCTCATTCCTACTGTGTTGTGTTTATTATTATTATTTGATGCTTTTGATACTTAGCTGAAATTAAGAGCATGACTGAAACCTAGAAAACCAACTTCGTTGGCCTTGGCATTGCTAGTTTCTATCACAGTCGTAGAACCAAAGAAAGCAGAAATGAAATGAGACTTTGGCTTAATGATGTTACGGACGCTACTTCGGCATAATGGATTTGAGTCCTTGTCTATAGTTAGTTAGGGTCGAGCTCTCTTTTCTTATTGAGCCTTTTTTTTTGCTCTTGTATATTTTTTCATTTCTCTCAACGAAAATGTGTTTGTATTTATATTATTCTACTGTGTAAGAGGGATTTAAAACTGTCGTTCTGGCAATTCCATGGATTTTATTATTGTACTGAACTGAATTGCAAATTGTTGTTTTGGACCTGAATTTCACCATCTCATATCATGTCATCACTTCCATCCATACACTTAGCTAGAAATAAACATTCGTAGCTTTTTTAATTCCATATGTTTGAGGTTTTTTTTTTATTCAGTTCATATGTATTTTGTTGCCTACGACTTGAGTTTATTGACCAAAGGTTCTATGGTATGGTGCTAGTTAGATTGGCTGTGGACAGAAGAAGGAAAAGCATTTGAGTAAACCTGAATTAGGCCATTTTAGGGCTCAAGGTGTTCCATTGAAGAGGAAGCTGAGGGAGTTCCCAGTGTCACAAGATGCACTTCTTCCAGTTGGTACAGAAATTGGCGTTCGCCATTTTGTTCCTGGACAGTATGTCGATGTGACAGGAATAAGTAGAGGGAAAGGTTTTCAGGTGAATCCATTGCACCATTGCACCATTACTCCATTCGTTTTTTAACTGACAACCTTTGTTCCTTTTTCTTTTCATTCAATTCCTTATATTTTCTATTATGGTTAAGTCAGTAACATGTCAAAATTACTTAAACAGTTAAATGTTATTGTGGGAACATTGATTCATATAAATGCAGGTCTCTCTCTGAATTTAGGTCAAAGTACCATTTAAAAGCTGCTTAATCATCAATGACAATTGAATGAGCAGAACTATGAAATTGAACTTCAACAAGTGATAGCTGTAAACTAGCGGCGAGTTATAATAAACTTTGTTGGTTCCCTTTCTCTTTCTTCCTTGGCACTGACGTTTCTAGTCGATCATGCTCATCAACATTATTCTGTATGCACTGATATTTCTTCCAGTGATTCTCAAGAACATGAACTATTGGCCTTTTCATCAAGCATTACTGATGATTCAAAACTTGTTATGTTTAACTACCCAAAACTTTCTTTGATGTCCAACTTACAACTCAAACTTTAACTTATAGAGCAAGTCAAATCCAATTAAAGTATCAAGTTACACCAAATGAACATATAGATGTAAGAGACCTTATCTAGCAAATAAAAAACTATTAATTGACAAAGAATGCTAAAACCACAACAGTAAATATCTTTAGCTCAAATCCCAAGTGAACAACCTCATGGTGTTCCACTCTGCTAATAACTGAACTCCAAAATCTAAAATGAGAGTTTTAGCAGAAACAACTATCGGACAAGTTATGCATGCTTGTTTGTCATTATCAGCTTACAAATTGTATCATTGCAATCCGTACTTTGGGTTGTGAGCATTATAATAGATTTAGTAAGCAGTAAGCAAATATTTACATGAGAGTGACACACAATGACCCAAATATTGATATTTTATCATGATTTAACCTAGTTTTAGTCATGCTTGAACTTGCTCATTGGCTTGCATTCTTAATTACCTGACTTGCTGCATGATCTGCAAGATACAAATTAACCATCAAAGTTACAGGGAGATGTATGTGTGTGTTATCATACGATAACATGACAATTTTTCAATGAGGTCATGTACCTCCTGGAGACAAATAATAAAAAAACGCAATTATATATAACATATATATAAATTGAGGAGCTAACCCCGTTGAAAGATGTATGTAGCTGATCATTTATGTGATCATTGCTTTGTCTTCTTTCATGTTAGTGTGCTTGTTTGGGTAATTTCGAGCTGTATATCTGTGTCCTGAAAATTCTTCACGAGATCCAGAATTATTATAACGAAATTGTTTTCTTTCTTACCTTTTGTAAATGGTATAAAATCTTTTCCATGAAAGTGATGCCTCTCATTGCTAATCCTTTCTCTAATTGTGCTCAGGGAGTGATGAAAAGGCATGGTTTCAAAGGAATGCCAGCATCCCACGGAGCATCATTATCTCATAGGAGCGGAGGTTCTACGGGTCAGAGGGATGCTCCTGGAAAGGTGAGTTTATGTTTCCATGGTGGTATTCATTTTTAAGATTGAGTGATGTTTTGGGTCTTAATAGCTTCCTGAAACTCACATGTTAGTCAAGTAGTTGTAGTTGTACATACTGGTAGCCTACTAGGTTGCCTCTGATTCTCGGAGTTTTGCTGCTTTTCTAATATTCATGCTATGTCTTTTGATTTCTGTCAATTTGCAAGGGTTCCAAATGAATGGCAATTTCATAGAAGAGAAATAAGAATTGGCTGGAAGCATATGGTTACAGAATAAATGACTAACTTGCATGGTGAAAGTCTATTTGCATAATTCTTCCTTGGATGGTTTACGGATTTAGCTCTGCTTGTGGAATGAATTACTGTCGAGCAACATGTGGCAGTTTTCACGGGTTACAATCTTGAAAATAATATTCTTTTTGTTGTTGCCTTGTTTCTGGTGAAGCTTTAATGTTAATGAAGTTTGAAAAAACTTGCACTCTTGAATCCTCTTTCACATACCTACCTTATCTTCTTCAGTTCCGTGATTCAATAGAACATACTTGAGTTTTGTTTGATTTTCTTTGCATATATAACCATGGAAACCTGTGTTGAATTTTAGAAGCTTGTTCCTGTTTCTAGATACAGAGAAAAGAAAATCCAAAAGTGTGGAATAACTATTTATGATCTGTTTAAAGAAAGTTCTAGTCTGTTTTCACTGTATTCCATGTGATTTATGATGGTGAAAAACACCTGGTTATTTTACAGGTTTTCAAAGGCAGAAAGATGGCTGGGCGTATGGGTGGAAAGCAGAGAACTGTTAAAAATGTGTGGATATACAAAATTGACCCTGCAAGGAATTTGATGTGGGTGAAAGGACCAGTAAGTTTCTTCTAAAAACCGAATTTAAACTCTTGATGTGATCCCCTCTAGAGTCTTTGTCATGTACATAAATATCTTACTCTTGGGACATCATGATCTGATGTTTTTGTTGTCCACAACTCCACCTCTATTTAGATCCCCGGTGCCGAAGGAAACTTTGTATTTATAAAAGACGCCGTGTACAAGAAACTCAATAAGTCGGCAATCCTTCCATTTCCTACGTACTTCGCAACTGATGGTGAGGACACAGACAAGTTGGAACCTCTTGTTGCTGATCTTGGAGAAGTAGATCCATTTATGACTGGAGATTGATTAGGAGTTGGCCTTCAGCGCAAGTTGTGCACTTTGCTCTGCTTTTTCCTTTTATTGATGGTGTTTGCAGGTATGCTTATTGACCCCAACCCTTACGGGTAGTCAATTTCATTATAAAACTGCAGTCGGAGGATCTCTACGAGGTGATCGAATCTTCTAATCCGATGGTATTCTTCTACAGTTATATTTTTCTTTTCAAAAATTTTCTCACCATCTCAAACCTGTACCGGAAAAGACCATTTTGAAATAAAAAGAGTAGAGAGAAGAAAAAAAAGCTACGATTATTCAGAATTTTTGGTTGAGTGATCTTATAACCTCTTTTGGGAATTGAAGTTAATGTTTATGTGAACTTACTTAGGAAGATATTGTTCATGGCTGCCAATTGAGTTAGCAATTTCTTACCATTCGAACCAAGTGTCAAACCTCTCTTTTCTTTATATTGTTTGTAATGTATTTCCTTTGCATTTTGAATTTTGGAATTGTCATCCGTTCTATAAACAATGTTTGACTCATGTTGAGACAAAAGTCAACTTGAATCAATGGTTCAAAATGTGTGCAGTTGAACCAAAGTGATACATTTCAGC

mRNA sequence

ATGTCAGCTTTATCTAGAGGTCTCATTTCTCGTTTTCGTCTTCTCTCGATCAATTCAAGCGCTTCTCATTCAATTACTACTTCTTCTTCTTCTTCTTCTTCAAGGACAAATGCGTCCTGTTACTACTTCTTCCGTGCTTTCAGTACCCAGGATTTGACTCAGGCTAGCGATGGGTCTTTGTCAGCTTCTTCGATTTTTGAAGCTAAACCTGGTACTATGGGAAGTAACTCTACGCGGACGGGTGTTATTGCCGTCAAGTGTGGAATGTCGGCGTTGTGGGATAAATGGGGAGCTAGGATACCCATCACTGTGCTCTGGGTTGATGATAATATTGTGTCTCAGGTCAAGACCATTGAGAAAGAAGGTATCACAGCTCTACAGATTGGCTGTGGACAGAAGAAGGAAAAGCATTTGAGTAAACCTGAATTAGGCCATTTTAGGGCTCAAGGTGTTCCATTGAAGAGGAAGCTGAGGGAGTTCCCAGTGTCACAAGATGCACTTCTTCCAGTTGGTACAGAAATTGGCGTTCGCCATTTTGTTCCTGGACAGTATGTCGATGTGACAGGAATAAGTAGAGGGAAAGGTTTTCAGGGAGTGATGAAAAGGCATGGTTTCAAAGGAATGCCAGCATCCCACGGAGCATCATTATCTCATAGGAGCGGAGGTTCTACGGGTCAGAGGGATGCTCCTGGAAAGGTTTTCAAAGGCAGAAAGATGGCTGGGCGTATGGGTGGAAAGCAGAGAACTGTTAAAAATGTGTGGATATACAAAATTGACCCTGCAAGGAATTTGATGTGGGTGAAAGGACCAATCCCCGGTGCCGAAGGAAACTTTGTATTTATAAAAGACGCCGTGTACAAGAAACTCAATAAGTCGGCAATCCTTCCATTTCCTACGTACTTCGCAACTGATGGTGAGGACACAGACAAGTTGGAACCTCTTGTTGCTGATCTTGGAGAAGTAGATCCATTTATGACTGGAGATTGA

Coding sequence (CDS)

ATGTCAGCTTTATCTAGAGGTCTCATTTCTCGTTTTCGTCTTCTCTCGATCAATTCAAGCGCTTCTCATTCAATTACTACTTCTTCTTCTTCTTCTTCTTCAAGGACAAATGCGTCCTGTTACTACTTCTTCCGTGCTTTCAGTACCCAGGATTTGACTCAGGCTAGCGATGGGTCTTTGTCAGCTTCTTCGATTTTTGAAGCTAAACCTGGTACTATGGGAAGTAACTCTACGCGGACGGGTGTTATTGCCGTCAAGTGTGGAATGTCGGCGTTGTGGGATAAATGGGGAGCTAGGATACCCATCACTGTGCTCTGGGTTGATGATAATATTGTGTCTCAGGTCAAGACCATTGAGAAAGAAGGTATCACAGCTCTACAGATTGGCTGTGGACAGAAGAAGGAAAAGCATTTGAGTAAACCTGAATTAGGCCATTTTAGGGCTCAAGGTGTTCCATTGAAGAGGAAGCTGAGGGAGTTCCCAGTGTCACAAGATGCACTTCTTCCAGTTGGTACAGAAATTGGCGTTCGCCATTTTGTTCCTGGACAGTATGTCGATGTGACAGGAATAAGTAGAGGGAAAGGTTTTCAGGGAGTGATGAAAAGGCATGGTTTCAAAGGAATGCCAGCATCCCACGGAGCATCATTATCTCATAGGAGCGGAGGTTCTACGGGTCAGAGGGATGCTCCTGGAAAGGTTTTCAAAGGCAGAAAGATGGCTGGGCGTATGGGTGGAAAGCAGAGAACTGTTAAAAATGTGTGGATATACAAAATTGACCCTGCAAGGAATTTGATGTGGGTGAAAGGACCAATCCCCGGTGCCGAAGGAAACTTTGTATTTATAAAAGACGCCGTGTACAAGAAACTCAATAAGTCGGCAATCCTTCCATTTCCTACGTACTTCGCAACTGATGGTGAGGACACAGACAAGTTGGAACCTCTTGTTGCTGATCTTGGAGAAGTAGATCCATTTATGACTGGAGATTGA

Homology

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BLAST of CSPI03G15360 vs. Swiss-Prot
Match: RK3B_ARATH (50S ribosomal protein L3-2, chloroplastic OS=Arabidopsis thaliana GN=RPL3B PE=2 SV=1)

HSP 1 Score: 455.3 bits (1170), Expect = 5.7e-127
Identity = 238/332 (71.69%), Postives = 266/332 (80.12%), Query Frame = 1


Query: 1   MSALSRGLISRF-RLLSINSSASHSITTSSSSSSSRTNASCYYFFRAFSTQDLTQASDGS 60
           M+A+ RGL+SR  + LSI S        + SSS S  + S ++  R FS+        GS
Sbjct: 1   MAAVPRGLLSRINQFLSIRS-------ITPSSSESLPHCSSFFLIRRFSSDTGLMDGGGS 60

Query: 61  L---SASSIFEAKPGTMGSNSTRTGVIAVKCGMSALWDKWGARIPITVLWVDDNIVSQVK 120
               + + I EAK G M S S RTG+IAVKCGM+ALWDKWG RIPI++LWVDDNIVSQVK
Sbjct: 61  DIIGAQTRIIEAKQGEMSSRSKRTGIIAVKCGMTALWDKWGKRIPISILWVDDNIVSQVK 120

Query: 121 TIEKEGITALQIGCGQKKEKHLSKPELGHFRAQGVPLKRKLREFPVSQDALLPVGTEIGV 180
           T+EKEGI ALQIGCGQKK KHLSK  +GHFRAQGVPLKRKLREFPV++DALLPVGT +GV
Sbjct: 121 TVEKEGIFALQIGCGQKKPKHLSKAVVGHFRAQGVPLKRKLREFPVTEDALLPVGTSLGV 180

Query: 181 RHFVPGQYVDVTGISRGKGFQGVMKRHGFKGMPASHGASLSHRSGGSTGQRDAPGKVFKG 240
           RHFVPGQYVDVTGI+RGKGFQG MKRHGF GMPASHGASLSHRSGGSTGQRDAPGKVFKG
Sbjct: 181 RHFVPGQYVDVTGITRGKGFQGCMKRHGFSGMPASHGASLSHRSGGSTGQRDAPGKVFKG 240

Query: 241 RKMAGRMGGKQRTVKNVWIYKIDPARNLMWVKGPIPGAEGNFVFIKDAVYKKLNKSAILP 300
           RKMAGRMG  QRTVKNVW+YKIDPARNLMWV+G +PGAEGNFVFIKDA  KK + S  LP
Sbjct: 241 RKMAGRMGADQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAWCKKPDISK-LP 300

Query: 301 FPTYFATDGEDTDKLEPLVADLGEVDPFMTGD 329
           FPTY A + ED  +LEPLVADLGEVDPFM  +
Sbjct: 301 FPTYLAPEDEDPSELEPLVADLGEVDPFMLAE 324

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BLAST of CSPI03G15360 vs. Swiss-Prot
Match: RL3_NOVAD (50S ribosomal protein L3 OS=Novosphingobium aromaticivorans (strain DSM 12444 / F199) GN=rplC PE=3 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 1.1e-58
Identity = 111/220 (50.45%), Postives = 159/220 (72.27%), Query Frame = 1


Query: 79  RTGVIAVKCGMSALWDKWGARIPITVLWVDDNIVSQVKTIEKEGITALQIGCGQKKEKHL 138
           RTGVIA K GM+ L+ + G  +P+TVL +++  V  V+T E++G  ALQ+G G+ K+K++
Sbjct: 2   RTGVIAKKVGMTRLFQEDGRHVPVTVLSLENCQVVSVRTAERDGYVALQLGAGEAKQKNV 61

Query: 139 SKPELGHFRAQGVPLKRKLREFPVSQDALLPVGTEIGVRHFVPGQYVDVTGISRGKGFQG 198
           +KP+  HF    VPLK ++ EF V+ DALL VG+ I   HFVPGQYVD+TG ++GKGFQG
Sbjct: 62  AKPQREHFAKAEVPLKMEVAEFRVADDALLDVGSTIAASHFVPGQYVDITGQTQGKGFQG 121

Query: 199 VMKRHGFKGMPASHGASLSHRSGGSTGQRDAPGKVFKGRKMAGRMGGKQRTVKNVWIYKI 258
            MKR GF GM A+HG S+SHR+ GSTG R  PG+VFK +KMAG MG +QRT +N+ + + 
Sbjct: 122 AMKRWGFGGMRATHGVSISHRAHGSTGNRQDPGRVFKNKKMAGHMGDRQRTQQNLEVVRT 181

Query: 259 DPARNLMWVKGPIPGAEGNFVFIKDAVYKKLNKSAILPFP 299
           D  R L++VKG +PG++  ++ ++DAV  K+++ A  P+P
Sbjct: 182 DDERGLIFVKGSVPGSKNAWLLVRDAV--KVSRHAEAPYP 219

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BLAST of CSPI03G15360 vs. Swiss-Prot
Match: RL3_GLUOX (50S ribosomal protein L3 OS=Gluconobacter oxydans (strain 621H) GN=rplC PE=3 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 2.1e-57
Identity = 117/224 (52.23%), Postives = 150/224 (66.96%), Query Frame = 1


Query: 79  RTGVIAVKCGMSALWDKWGARIPITVLWVDDNIVSQVKTIEKEGITALQIGCGQKKEKHL 138
           RTG+IA K GM+ L+ + G  +P+TVL +D+  V   +T E++G TA+Q+G G  K K++
Sbjct: 2   RTGLIAKKLGMTRLFKEDGTHVPVTVLHLDNVEVVDARTNERDGYTAIQLGLGNAKVKNV 61

Query: 139 SKPELGHFRAQGVPLKRKLREFPVSQDALLPVGTEIGVRHFVPGQYVDVTGISRGKGFQG 198
           +K   GHF    V  KR L EF VS+DALL  GT++   HFV GQ VDVTG S+GKGF G
Sbjct: 62  TKANRGHFARTKVEPKRHLAEFRVSEDALLEAGTKLSAAHFVVGQKVDVTGQSKGKGFAG 121

Query: 199 VMKRHGFKGMPASHGASLSHRSGGSTGQRDAPGKVFKGRKMAGRMGGKQRTVKNVWIYKI 258
           VMKRH F G+ ASHG S+SHRS GSTGQR  PGKVFKG+KMAG MG ++ T  N+ I  +
Sbjct: 122 VMKRHNFAGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAGHMGDERVTTLNLEIAAV 181

Query: 259 DPARNLMWVKGPIPGAEGNFVFIKDAVYKKLNKSAILPFPTYFA 303
           D  RNL+ V+G IPGA+   V I+DA+ K  +  A  P  T  A
Sbjct: 182 DEERNLIMVRGAIPGAKNGLVLIRDAIKKARHADAPYPAATVAA 225

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BLAST of CSPI03G15360 vs. Swiss-Prot
Match: RL3_RUEPO (50S ribosomal protein L3 OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) GN=rplC PE=3 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 4.8e-57
Identity = 117/220 (53.18%), Postives = 151/220 (68.64%), Query Frame = 1


Query: 79  RTGVIAVKCGMSALWDKWGARIPITVLWVDDNIVSQVKTIEKEGITALQIGCGQKKEKHL 138
           R+G+IA K GM+ L+ + G +IP+TVL +D+  V   +T EK+G TA+Q+G G  K K +
Sbjct: 2   RSGIIAKKVGMTRLFMEDGKQIPVTVLQLDNLQVVAQRTTEKDGYTAVQLGAGTPKIKRV 61

Query: 139 SKPELGHFRAQGVPLKRKLREFPVSQDALLPVGTEIGVRHFVPGQYVDVTGISRGKGFQG 198
           SK   GHF AQ V  KRKL EF VS+DAL+ VG EI   HF+ GQ VDV+G S GKGF G
Sbjct: 62  SKAMRGHFAAQKVEPKRKLAEFRVSEDALIEVGAEISAEHFLTGQKVDVSGTSIGKGFAG 121

Query: 199 VMKRHGFKGMPASHGASLSHRSGGSTGQRDAPGKVFKGRKMAGRMGGKQRTVKNVWIYKI 258
            MKRH F G+ ASHG S+SHRS GSTGQ   PG+VFKG+KMAG MG  + T +N+ + K 
Sbjct: 122 AMKRHNFGGLRASHGVSISHRSHGSTGQCQDPGRVFKGKKMAGHMGAARVTTQNLEVVKT 181

Query: 259 DPARNLMWVKGPIPGAEGNFVFIKDAVYKKLNKSAILPFP 299
           D  R L+++KG +PG +  +V +KDAV KK  +   LPFP
Sbjct: 182 DAERGLVFIKGAVPGPKSGWVTVKDAVKKKAPEG--LPFP 219

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BLAST of CSPI03G15360 vs. Swiss-Prot
Match: RL3_ZYMMO (50S ribosomal protein L3 OS=Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) GN=rplC PE=3 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 3.1e-56
Identity = 112/239 (46.86%), Postives = 158/239 (66.11%), Query Frame = 1


Query: 79  RTGVIAVKCGMSALWDKWGARIPITVLWVDDNIVSQVKTIEKEGITALQIGCGQKKEKHL 138
           RTGVIA K GM+ L+ + G  +P+TVL ++D  V  VK  +++G  A+Q+G G  K K++
Sbjct: 2   RTGVIAKKVGMTRLFQEDGRHVPVTVLKLEDVQVVAVKNKDQDGYVAVQLGAGSAKAKNV 61

Query: 139 SKPELGHFRAQGVPLKRKLREFPVSQDALLPVGTEIGVRHFVPGQYVDVTGISRGKGFQG 198
           +KP  GHF    V LK KL EFPVS+DA+L VGT I   HF+ GQ VD++G ++GKGF G
Sbjct: 62  TKPVRGHFAKAEVELKAKLVEFPVSEDAVLEVGTSISADHFIAGQLVDISGQTQGKGFAG 121

Query: 199 VMKRHGFKGMPASHGASLSHRSGGSTGQRDAPGKVFKGRKMAGRMGGKQRTVKNVWIYKI 258
            MKR GF G+ A+HG SLSHRS GSTG R  PG+VFK +KMAG MG +QRT +N+ +   
Sbjct: 122 AMKRWGFGGLRATHGVSLSHRSHGSTGNRQDPGRVFKNKKMAGHMGARQRTQQNLEVIST 181

Query: 259 DPARNLMWVKGPIPGAEGNFVFIKDAVYKKLNKSAILPFPTYFATDGEDTDKLEPLVAD 318
           D  R+L++V+G +PG++G ++ I+DAV  K+ +    P+P        +     P+ A+
Sbjct: 182 DAERDLIFVRGSVPGSKGAWLIIRDAV--KVARPTDAPYPAAIKAANGNEAPAAPVAAE 238

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BLAST of CSPI03G15360 vs. TrEMBL
Match: A0A0A0LAV0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171140 PE=3 SV=1)

HSP 1 Score: 649.4 bits (1674), Expect = 2.3e-183
Identity = 328/328 (100.00%), Postives = 328/328 (100.00%), Query Frame = 1


Query: 1   MSALSRGLISRFRLLSINSSASHSITTSSSSSSSRTNASCYYFFRAFSTQDLTQASDGSL 60
           MSALSRGLISRFRLLSINSSASHSITTSSSSSSSRTNASCYYFFRAFSTQDLTQASDGSL
Sbjct: 1   MSALSRGLISRFRLLSINSSASHSITTSSSSSSSRTNASCYYFFRAFSTQDLTQASDGSL 60

Query: 61  SASSIFEAKPGTMGSNSTRTGVIAVKCGMSALWDKWGARIPITVLWVDDNIVSQVKTIEK 120
           SASSIFEAKPGTMGSNSTRTGVIAVKCGMSALWDKWGARIPITVLWVDDNIVSQVKTIEK
Sbjct: 61  SASSIFEAKPGTMGSNSTRTGVIAVKCGMSALWDKWGARIPITVLWVDDNIVSQVKTIEK 120

Query: 121 EGITALQIGCGQKKEKHLSKPELGHFRAQGVPLKRKLREFPVSQDALLPVGTEIGVRHFV 180
           EGITALQIGCGQKKEKHLSKPELGHFRAQGVPLKRKLREFPVSQDALLPVGTEIGVRHFV
Sbjct: 121 EGITALQIGCGQKKEKHLSKPELGHFRAQGVPLKRKLREFPVSQDALLPVGTEIGVRHFV 180

Query: 181 PGQYVDVTGISRGKGFQGVMKRHGFKGMPASHGASLSHRSGGSTGQRDAPGKVFKGRKMA 240
           PGQYVDVTGISRGKGFQGVMKRHGFKGMPASHGASLSHRSGGSTGQRDAPGKVFKGRKMA
Sbjct: 181 PGQYVDVTGISRGKGFQGVMKRHGFKGMPASHGASLSHRSGGSTGQRDAPGKVFKGRKMA 240

Query: 241 GRMGGKQRTVKNVWIYKIDPARNLMWVKGPIPGAEGNFVFIKDAVYKKLNKSAILPFPTY 300
           GRMGGKQRTVKNVWIYKIDPARNLMWVKGPIPGAEGNFVFIKDAVYKKLNKSAILPFPTY
Sbjct: 241 GRMGGKQRTVKNVWIYKIDPARNLMWVKGPIPGAEGNFVFIKDAVYKKLNKSAILPFPTY 300

Query: 301 FATDGEDTDKLEPLVADLGEVDPFMTGD 329
           FATDGEDTDKLEPLVADLGEVDPFMTGD
Sbjct: 301 FATDGEDTDKLEPLVADLGEVDPFMTGD 328

[Close]

BLAST of CSPI03G15360 vs. TrEMBL
Match: E5GC40_CUCME (50S ribosomal protein l3 OS=Cucumis melo subsp. melo PE=3 SV=1)

HSP 1 Score: 621.7 bits (1602), Expect = 5.1e-175
Identity = 312/328 (95.12%), Postives = 319/328 (97.26%), Query Frame = 1


Query: 1   MSALSRGLISRFRLLSINSSASHSITTSSSSSSSRTNASCYYFFRAFSTQDLTQASDGSL 60
           MSALSRGLISR RLLSINS ASHS+T+SS SSSSRTNASCYYFFRAFSTQDLTQASDGSL
Sbjct: 1   MSALSRGLISRLRLLSINSGASHSVTSSSYSSSSRTNASCYYFFRAFSTQDLTQASDGSL 60

Query: 61  SASSIFEAKPGTMGSNSTRTGVIAVKCGMSALWDKWGARIPITVLWVDDNIVSQVKTIEK 120
            ASSI EAKPGTM SNS RTGVIAVKCGMSALWDKWGARIPITVLWVDDNIVSQVKTIEK
Sbjct: 61  PASSIIEAKPGTMSSNSRRTGVIAVKCGMSALWDKWGARIPITVLWVDDNIVSQVKTIEK 120

Query: 121 EGITALQIGCGQKKEKHLSKPELGHFRAQGVPLKRKLREFPVSQDALLPVGTEIGVRHFV 180
           EGITALQIGCGQKKEKHLSKPELGHFRAQGVPLKRKL+EFPVSQDALLPVGTEIG RHFV
Sbjct: 121 EGITALQIGCGQKKEKHLSKPELGHFRAQGVPLKRKLKEFPVSQDALLPVGTEIGARHFV 180

Query: 181 PGQYVDVTGISRGKGFQGVMKRHGFKGMPASHGASLSHRSGGSTGQRDAPGKVFKGRKMA 240
           PGQYVDVTGISRGKGFQGVMKRHGFKGMPASHGASLSHRSGGSTGQRDAPGKVFKGRKMA
Sbjct: 181 PGQYVDVTGISRGKGFQGVMKRHGFKGMPASHGASLSHRSGGSTGQRDAPGKVFKGRKMA 240

Query: 241 GRMGGKQRTVKNVWIYKIDPARNLMWVKGPIPGAEGNFVFIKDAVYKKLNKSAILPFPTY 300
           GRMGGKQRTVKNVWIYKIDPARNL+WVKGPIPGAEG+FVFIKDA+YK+LNKSAILPFPTY
Sbjct: 241 GRMGGKQRTVKNVWIYKIDPARNLIWVKGPIPGAEGSFVFIKDAMYKRLNKSAILPFPTY 300

Query: 301 FATDGEDTDKLEPLVADLGEVDPFMTGD 329
           FATDGEDTDKLEPLVADLGEVDPFM GD
Sbjct: 301 FATDGEDTDKLEPLVADLGEVDPFMIGD 328

[Close]

BLAST of CSPI03G15360 vs. TrEMBL
Match: M5XEE9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008555mg PE=3 SV=1)

HSP 1 Score: 489.6 bits (1259), Expect = 3.0e-135
Identity = 245/328 (74.70%), Postives = 280/328 (85.37%), Query Frame = 1


Query: 1   MSALSRGLISRFRLLSINSSASHSITTSSSSSSSRTNASCYYFFRAFSTQDLTQASDGSL 60
           MSALSRGL+SR RLLS+N + + S   +++++++    + Y+FFR F+++ L  AS+ + 
Sbjct: 1   MSALSRGLLSRLRLLSLNPTTTSSAAAANANATTSFTQTQYHFFRWFNSEALVDASEVAE 60

Query: 61  SASSIFEAKPGTMGSNSTRTGVIAVKCGMSALWDKWGARIPITVLWVDDNIVSQVKTIEK 120
             S + EAKPG M  +S RTG+IAVKCGM+A WDKWGAR+PITVLWVDDNIVSQVKT EK
Sbjct: 61  ERSRVIEAKPGAMSPSSKRTGLIAVKCGMTARWDKWGARVPITVLWVDDNIVSQVKTPEK 120

Query: 121 EGITALQIGCGQKKEKHLSKPELGHFRAQGVPLKRKLREFPVSQDALLPVGTEIGVRHFV 180
           EG  ALQIGCGQKK KHL+K E+GHFRAQGVPLKRKLREFPV++DALLPVG  IGVRHFV
Sbjct: 121 EGFPALQIGCGQKKAKHLTKSEVGHFRAQGVPLKRKLREFPVTKDALLPVGMSIGVRHFV 180

Query: 181 PGQYVDVTGISRGKGFQGVMKRHGFKGMPASHGASLSHRSGGSTGQRDAPGKVFKGRKMA 240
           PGQYVDVTGI+RGKGFQG MKRHGFKGMPASHGASLSHRS GSTGQRDAPGKVFKGRKMA
Sbjct: 181 PGQYVDVTGITRGKGFQGGMKRHGFKGMPASHGASLSHRSIGSTGQRDAPGKVFKGRKMA 240

Query: 241 GRMGGKQRTVKNVWIYKIDPARNLMWVKGPIPGAEGNFVFIKDAVYKKLNKSAILPFPTY 300
           GRMGGKQRTVKNVW+YKIDPARNLMWV+G +PGAEGNFVFI+DA YKK + S +LPFPTY
Sbjct: 241 GRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIRDAFYKKPDIS-LLPFPTY 300

Query: 301 FATDGEDTDKLEPLVADLGEVDPFMTGD 329
           FA + ED  KLE LVADLGEVDPFM  D
Sbjct: 301 FAPEDEDATKLETLVADLGEVDPFMVAD 327

[Close]

BLAST of CSPI03G15360 vs. TrEMBL
Match: A9PFR0_POPTR (50S ribosomal protein L3-2 OS=Populus trichocarpa GN=POPTR_0008s21180g PE=2 SV=1)

HSP 1 Score: 466.8 bits (1200), Expect = 2.1e-128
Identity = 242/330 (73.33%), Postives = 264/330 (80.00%), Query Frame = 1


Query: 1   MSALSRGLISR-FRLLSINSSASHSITTSSSSSSSRTNASCYYFFRAFSTQDLTQASDGS 60
           MSALSRGLISR +R+LS NS    + TT             +Y  R FS   L   S   
Sbjct: 1   MSALSRGLISRLYRILSANSRTPPTATTK------------FYLLRCFSADALIDGSQVE 60

Query: 61  LSASS-IFEAKPGTMGSNSTRTGVIAVKCGMSALWDKWGARIPITVLWVDDNIVSQVKTI 120
               S I EAKPG M  NS RTGV+AVKCGM+ALWDKWGARIPITVLWVDDNIVSQVKT+
Sbjct: 61  YHQQSRIIEAKPGVMTPNSKRTGVVAVKCGMTALWDKWGARIPITVLWVDDNIVSQVKTV 120

Query: 121 EKEGITALQIGCGQKKEKHLSKPELGHFRAQGVPLKRKLREFPVSQDALLPVGTEIGVRH 180
           EKEG  ALQ+GCGQKKEKHL+KPE+GHFRAQGVP+KRKLREFPV++DALLPVGT +GVRH
Sbjct: 121 EKEGFFALQVGCGQKKEKHLTKPEVGHFRAQGVPMKRKLREFPVTEDALLPVGTYVGVRH 180

Query: 181 FVPGQYVDVTGISRGKGFQGVMKRHGFKGMPASHGASLSHRSGGSTGQRDAPGKVFKGRK 240
           FVPGQ+VDV GI+ GKGFQG MKRHGFKG PASHGASLSHRS GSTGQRDAPGKVFKG+K
Sbjct: 181 FVPGQFVDVAGITMGKGFQGGMKRHGFKGGPASHGASLSHRSIGSTGQRDAPGKVFKGKK 240

Query: 241 MAGRMGGKQRTVKNVWIYKIDPARNLMWVKGPIPGAEGNFVFIKDAVYKKLNKSAILPFP 300
           M GRMGG QRTVKNVW+YKIDPARNLMWVKG +PGAEGNFVFIKD+VYKK +   +LPFP
Sbjct: 241 MPGRMGGVQRTVKNVWVYKIDPARNLMWVKGQVPGAEGNFVFIKDSVYKKPD-IQMLPFP 300

Query: 301 TYFATDGEDTDKLEPLVADLGEVDPFMTGD 329
           TYF    ED D  EPLVADLGEVDPFM  D
Sbjct: 301 TYFG--AEDDDNAEPLVADLGEVDPFMVAD 315

[Close]

BLAST of CSPI03G15360 vs. TrEMBL
Match: D7T692_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g00810 PE=3 SV=1)

HSP 1 Score: 465.3 bits (1196), Expect = 6.1e-128
Identity = 237/328 (72.26%), Postives = 259/328 (78.96%), Query Frame = 1


Query: 1   MSALSRGLISRFRLLSINSSASHSITTSSSSSSSRTNASCYYFFRAFSTQDLTQASDGSL 60
           MSA SRGLIS FR LSI    S  + +              Y FR F ++ L        
Sbjct: 1   MSAASRGLISGFRFLSIGPRTSAIVAS--------------YQFRRFGSESLIDEEP--- 60

Query: 61  SASSIFEAKPGTMGSNSTRTGVIAVKCGMSALWDKWGARIPITVLWVDDNIVSQVKTIEK 120
               I   KPG M  NS RTG IAVKCGMSALWDKWGAR+PITVLW+DDNIVSQVKT EK
Sbjct: 61  ---RIIVPKPGVMSPNSKRTGAIAVKCGMSALWDKWGARVPITVLWLDDNIVSQVKTFEK 120

Query: 121 EGITALQIGCGQKKEKHLSKPELGHFRAQGVPLKRKLREFPVSQDALLPVGTEIGVRHFV 180
           EG+ ALQ+GCGQKK KHL+KPE+GHFRAQGVPLKRKLREFPV++DALLPVGT IGVRHFV
Sbjct: 121 EGLNALQVGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFV 180

Query: 181 PGQYVDVTGISRGKGFQGVMKRHGFKGMPASHGASLSHRSGGSTGQRDAPGKVFKGRKMA 240
           PGQYVDVTGI+RGKGFQG MKR GFKGMPASHGASLSHRS GSTGQRDAPGKVFKG+KM 
Sbjct: 181 PGQYVDVTGITRGKGFQGGMKRWGFKGMPASHGASLSHRSIGSTGQRDAPGKVFKGKKMP 240

Query: 241 GRMGGKQRTVKNVWIYKIDPARNLMWVKGPIPGAEGNFVFIKDAVYKKLNKSAILPFPTY 300
           GRMGGKQRTVKNVW+YKIDP RNLMWV+G +PGAEGNFVFIKDAVYKK + S ILPFPTY
Sbjct: 241 GRMGGKQRTVKNVWVYKIDPTRNLMWVRGQVPGAEGNFVFIKDAVYKKPDAS-ILPFPTY 300

Query: 301 FATDGEDTDKLEPLVADLGEVDPFMTGD 329
           F  + ED   LEP+VADLG++DPFM  D
Sbjct: 301 FPAEDEDPTVLEPIVADLGDIDPFMVAD 307

[Close]

BLAST of CSPI03G15360 vs. TAIR10
Match: AT3G17465.1 (AT3G17465.1 ribosomal protein L3 plastid)

HSP 1 Score: 455.3 bits (1170), Expect = 3.2e-128
Identity = 238/332 (71.69%), Postives = 266/332 (80.12%), Query Frame = 1


Query: 1   MSALSRGLISRF-RLLSINSSASHSITTSSSSSSSRTNASCYYFFRAFSTQDLTQASDGS 60
           M+A+ RGL+SR  + LSI S        + SSS S  + S ++  R FS+        GS
Sbjct: 1   MAAVPRGLLSRINQFLSIRS-------ITPSSSESLPHCSSFFLIRRFSSDTGLMDGGGS 60

Query: 61  L---SASSIFEAKPGTMGSNSTRTGVIAVKCGMSALWDKWGARIPITVLWVDDNIVSQVK 120
               + + I EAK G M S S RTG+IAVKCGM+ALWDKWG RIPI++LWVDDNIVSQVK
Sbjct: 61  DIIGAQTRIIEAKQGEMSSRSKRTGIIAVKCGMTALWDKWGKRIPISILWVDDNIVSQVK 120

Query: 121 TIEKEGITALQIGCGQKKEKHLSKPELGHFRAQGVPLKRKLREFPVSQDALLPVGTEIGV 180
           T+EKEGI ALQIGCGQKK KHLSK  +GHFRAQGVPLKRKLREFPV++DALLPVGT +GV
Sbjct: 121 TVEKEGIFALQIGCGQKKPKHLSKAVVGHFRAQGVPLKRKLREFPVTEDALLPVGTSLGV 180

Query: 181 RHFVPGQYVDVTGISRGKGFQGVMKRHGFKGMPASHGASLSHRSGGSTGQRDAPGKVFKG 240
           RHFVPGQYVDVTGI+RGKGFQG MKRHGF GMPASHGASLSHRSGGSTGQRDAPGKVFKG
Sbjct: 181 RHFVPGQYVDVTGITRGKGFQGCMKRHGFSGMPASHGASLSHRSGGSTGQRDAPGKVFKG 240

Query: 241 RKMAGRMGGKQRTVKNVWIYKIDPARNLMWVKGPIPGAEGNFVFIKDAVYKKLNKSAILP 300
           RKMAGRMG  QRTVKNVW+YKIDPARNLMWV+G +PGAEGNFVFIKDA  KK + S  LP
Sbjct: 241 RKMAGRMGADQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAWCKKPDISK-LP 300

Query: 301 FPTYFATDGEDTDKLEPLVADLGEVDPFMTGD 329
           FPTY A + ED  +LEPLVADLGEVDPFM  +
Sbjct: 301 FPTYLAPEDEDPSELEPLVADLGEVDPFMLAE 324

[Close]

BLAST of CSPI03G15360 vs. TAIR10
Match: AT2G43030.1 (AT2G43030.1 Ribosomal protein L3 family protein)

HSP 1 Score: 147.5 bits (371), Expect = 1.4e-35
Identity = 88/230 (38.26%), Postives = 134/230 (58.26%), Query Frame = 1


Query: 61  SASSIFEAKPGTM----GSNSTRTGVIAVKCGMSALWDKWGARIPITVL-WVDDNIVSQV 120
           S+S + ++ P T      S     GV+  K GM + +++ G  +P+TV+ + + NIV+Q+
Sbjct: 33  SSSLLIKSSPKTRFVVSSSMEAGIGVMGSKLGMMSFFEEDGTVVPVTVVGFREGNIVTQI 92

Query: 121 KTIEKEGITALQIGCGQKKEKHLSKPELGHFRAQGVPLKRKLREFPVSQ-DALLPVGTEI 180
           KT+  +G  A+QIG  + ++K L+KPE GH +  G    R L+EF ++  +   P    +
Sbjct: 93  KTLATDGYDAVQIGYRRVRDKKLTKPETGHLQKAGTIPMRHLQEFRLTNIEGFEPNQKLV 152

Query: 181 GVRHFVPGQYVDVTGISRGKGFQGVMKRHGFKGMPASHGASLSHRSGGSTGQRDAPGKVF 240
               F  G  VDV G + GKGFQG +KRH FK    +HG S SHR+ GS G    PG+V+
Sbjct: 153 FDEIFKEGDLVDVAGTTIGKGFQGGIKRHHFKRGQMTHG-SKSHRALGSIGAGTTPGRVY 212

Query: 241 KGRKMAGRMGGKQRTVKNVWIYKIDPARNLMWVKGPIPGAEGNFVFIKDA 285
           KG+KM GRMGG +  ++ + I K+D   N++ +KG +PG  GN + I  A
Sbjct: 213 KGKKMPGRMGGTRTKIRKLKIVKVDKELNVVMIKGALPGKPGNLLRITPA 261

[Close]

BLAST of CSPI03G15360 vs. NCBI nr
Match: gi|449459792|ref|XP_004147630.1| (PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Cucumis sativus])

HSP 1 Score: 649.4 bits (1674), Expect = 3.3e-183
Identity = 328/328 (100.00%), Postives = 328/328 (100.00%), Query Frame = 1


Query: 1   MSALSRGLISRFRLLSINSSASHSITTSSSSSSSRTNASCYYFFRAFSTQDLTQASDGSL 60
           MSALSRGLISRFRLLSINSSASHSITTSSSSSSSRTNASCYYFFRAFSTQDLTQASDGSL
Sbjct: 1   MSALSRGLISRFRLLSINSSASHSITTSSSSSSSRTNASCYYFFRAFSTQDLTQASDGSL 60

Query: 61  SASSIFEAKPGTMGSNSTRTGVIAVKCGMSALWDKWGARIPITVLWVDDNIVSQVKTIEK 120
           SASSIFEAKPGTMGSNSTRTGVIAVKCGMSALWDKWGARIPITVLWVDDNIVSQVKTIEK
Sbjct: 61  SASSIFEAKPGTMGSNSTRTGVIAVKCGMSALWDKWGARIPITVLWVDDNIVSQVKTIEK 120

Query: 121 EGITALQIGCGQKKEKHLSKPELGHFRAQGVPLKRKLREFPVSQDALLPVGTEIGVRHFV 180
           EGITALQIGCGQKKEKHLSKPELGHFRAQGVPLKRKLREFPVSQDALLPVGTEIGVRHFV
Sbjct: 121 EGITALQIGCGQKKEKHLSKPELGHFRAQGVPLKRKLREFPVSQDALLPVGTEIGVRHFV 180

Query: 181 PGQYVDVTGISRGKGFQGVMKRHGFKGMPASHGASLSHRSGGSTGQRDAPGKVFKGRKMA 240
           PGQYVDVTGISRGKGFQGVMKRHGFKGMPASHGASLSHRSGGSTGQRDAPGKVFKGRKMA
Sbjct: 181 PGQYVDVTGISRGKGFQGVMKRHGFKGMPASHGASLSHRSGGSTGQRDAPGKVFKGRKMA 240

Query: 241 GRMGGKQRTVKNVWIYKIDPARNLMWVKGPIPGAEGNFVFIKDAVYKKLNKSAILPFPTY 300
           GRMGGKQRTVKNVWIYKIDPARNLMWVKGPIPGAEGNFVFIKDAVYKKLNKSAILPFPTY
Sbjct: 241 GRMGGKQRTVKNVWIYKIDPARNLMWVKGPIPGAEGNFVFIKDAVYKKLNKSAILPFPTY 300

Query: 301 FATDGEDTDKLEPLVADLGEVDPFMTGD 329
           FATDGEDTDKLEPLVADLGEVDPFMTGD
Sbjct: 301 FATDGEDTDKLEPLVADLGEVDPFMTGD 328

[Close]

BLAST of CSPI03G15360 vs. NCBI nr
Match: gi|659077038|ref|XP_008438999.1| (PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Cucumis melo])

HSP 1 Score: 621.7 bits (1602), Expect = 7.3e-175
Identity = 312/328 (95.12%), Postives = 319/328 (97.26%), Query Frame = 1


Query: 1   MSALSRGLISRFRLLSINSSASHSITTSSSSSSSRTNASCYYFFRAFSTQDLTQASDGSL 60
           MSALSRGLISR RLLSINS ASHS+T+SS SSSSRTNASCYYFFRAFSTQDLTQASDGSL
Sbjct: 1   MSALSRGLISRLRLLSINSGASHSVTSSSYSSSSRTNASCYYFFRAFSTQDLTQASDGSL 60

Query: 61  SASSIFEAKPGTMGSNSTRTGVIAVKCGMSALWDKWGARIPITVLWVDDNIVSQVKTIEK 120
            ASSI EAKPGTM SNS RTGVIAVKCGMSALWDKWGARIPITVLWVDDNIVSQVKTIEK
Sbjct: 61  PASSIIEAKPGTMSSNSRRTGVIAVKCGMSALWDKWGARIPITVLWVDDNIVSQVKTIEK 120

Query: 121 EGITALQIGCGQKKEKHLSKPELGHFRAQGVPLKRKLREFPVSQDALLPVGTEIGVRHFV 180
           EGITALQIGCGQKKEKHLSKPELGHFRAQGVPLKRKL+EFPVSQDALLPVGTEIG RHFV
Sbjct: 121 EGITALQIGCGQKKEKHLSKPELGHFRAQGVPLKRKLKEFPVSQDALLPVGTEIGARHFV 180

Query: 181 PGQYVDVTGISRGKGFQGVMKRHGFKGMPASHGASLSHRSGGSTGQRDAPGKVFKGRKMA 240
           PGQYVDVTGISRGKGFQGVMKRHGFKGMPASHGASLSHRSGGSTGQRDAPGKVFKGRKMA
Sbjct: 181 PGQYVDVTGISRGKGFQGVMKRHGFKGMPASHGASLSHRSGGSTGQRDAPGKVFKGRKMA 240

Query: 241 GRMGGKQRTVKNVWIYKIDPARNLMWVKGPIPGAEGNFVFIKDAVYKKLNKSAILPFPTY 300
           GRMGGKQRTVKNVWIYKIDPARNL+WVKGPIPGAEG+FVFIKDA+YK+LNKSAILPFPTY
Sbjct: 241 GRMGGKQRTVKNVWIYKIDPARNLIWVKGPIPGAEGSFVFIKDAMYKRLNKSAILPFPTY 300

Query: 301 FATDGEDTDKLEPLVADLGEVDPFMTGD 329
           FATDGEDTDKLEPLVADLGEVDPFM GD
Sbjct: 301 FATDGEDTDKLEPLVADLGEVDPFMIGD 328

[Close]

BLAST of CSPI03G15360 vs. NCBI nr
Match: gi|1009163611|ref|XP_015900059.1| (PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 493.4 bits (1269), Expect = 3.0e-136
Identity = 248/328 (75.61%), Postives = 283/328 (86.28%), Query Frame = 1


Query: 1   MSALSRGLISRFRLLSINSSASHSITTSSSSSSSRTNASCYYFFRAFSTQDLTQASDGSL 60
           MSALSRGL+SR RLLS+N  A+ + TT++S SSS    + Y+F R FS++ L  A++ + 
Sbjct: 1   MSALSRGLLSRIRLLSLNPPATCTATTTTSFSSS--TPALYHFSRRFSSESLLDATEIAS 60

Query: 61  SASSIFEAKPGTMGSNSTRTGVIAVKCGMSALWDKWGARIPITVLWVDDNIVSQVKTIEK 120
             + I EA+PG M  NS RTG+IAVKCGMSALWDKWGAR+PITVLWVDDNIVSQVKTI+K
Sbjct: 61  QPTRIIEARPGAMTPNSKRTGLIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIDK 120

Query: 121 EGITALQIGCGQKKEKHLSKPELGHFRAQGVPLKRKLREFPVSQDALLPVGTEIGVRHFV 180
           +  TALQIGCG KK KHL+KPE+GHFRAQ VPLKRKLREFPV+ DALLPVGT +GVRHFV
Sbjct: 121 DCTTALQIGCGHKKAKHLTKPEVGHFRAQDVPLKRKLREFPVTDDALLPVGTSLGVRHFV 180

Query: 181 PGQYVDVTGISRGKGFQGVMKRHGFKGMPASHGASLSHRSGGSTGQRDAPGKVFKGRKMA 240
           PGQ+VDVTGI+RGKGFQGVMKRHGFKG PASHGASLSHRSGGSTGQRDAPGKVFKGRKM 
Sbjct: 181 PGQFVDVTGITRGKGFQGVMKRHGFKGGPASHGASLSHRSGGSTGQRDAPGKVFKGRKMP 240

Query: 241 GRMGGKQRTVKNVWIYKIDPARNLMWVKGPIPGAEGNFVFIKDAVYKKLNKSAILPFPTY 300
           GRMG +QRTVKNVW+YKIDPARNLMWVKG +PGA+GNFVFIKD+VYKK N S +LPFPTY
Sbjct: 241 GRMGAQQRTVKNVWVYKIDPARNLMWVKGQVPGAKGNFVFIKDSVYKKPNIS-MLPFPTY 300

Query: 301 FATDGEDTDKLEPLVADLGEVDPFMTGD 329
           FA + EDT +LEP++ADLGEVDPFM  D
Sbjct: 301 FAAEDEDTAELEPMIADLGEVDPFMAAD 325

[Close]

BLAST of CSPI03G15360 vs. NCBI nr
Match: gi|645233773|ref|XP_008223504.1| (PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Prunus mume])

HSP 1 Score: 489.6 bits (1259), Expect = 4.4e-135
Identity = 245/328 (74.70%), Postives = 282/328 (85.98%), Query Frame = 1


Query: 1   MSALSRGLISRFRLLSINSSASHSITTSSSSSSSRTNASCYYFFRAFSTQDLTQASDGSL 60
           MSALSRGLISR RLLS+N +A+ +   ++++S ++T    Y+FFR FS++ L +A++ + 
Sbjct: 1   MSALSRGLISRLRLLSLNPTAAAAANANATTSFTQTQ---YHFFRWFSSEALVEAAEVAE 60

Query: 61  SASSIFEAKPGTMGSNSTRTGVIAVKCGMSALWDKWGARIPITVLWVDDNIVSQVKTIEK 120
             S + EAKPG M  +S RTG++AVKCGM+A WDKWGAR+PITVLWVDDNIVSQVKT EK
Sbjct: 61  ERSRVIEAKPGAMSPSSKRTGLVAVKCGMTARWDKWGARVPITVLWVDDNIVSQVKTPEK 120

Query: 121 EGITALQIGCGQKKEKHLSKPELGHFRAQGVPLKRKLREFPVSQDALLPVGTEIGVRHFV 180
           EG  ALQIGCGQKK KHL+K E+GHFRAQGVPLKRKL+EFPV++DALLPVG  IGVRHFV
Sbjct: 121 EGFPALQIGCGQKKAKHLTKSEVGHFRAQGVPLKRKLKEFPVTKDALLPVGMSIGVRHFV 180

Query: 181 PGQYVDVTGISRGKGFQGVMKRHGFKGMPASHGASLSHRSGGSTGQRDAPGKVFKGRKMA 240
           PGQYVDVTGI+RGKGFQG MKRHGFKGMP SHGASLSHRS GSTGQRDAPGKVFKG+KMA
Sbjct: 181 PGQYVDVTGITRGKGFQGGMKRHGFKGMPESHGASLSHRSIGSTGQRDAPGKVFKGKKMA 240

Query: 241 GRMGGKQRTVKNVWIYKIDPARNLMWVKGPIPGAEGNFVFIKDAVYKKLNKSAILPFPTY 300
           GRMGGKQRTVKNVW+YKIDPARNLMWV+G +PGAEGNFVFI+DA YKK + S +LPFPTY
Sbjct: 241 GRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIRDAFYKKPDIS-LLPFPTY 300

Query: 301 FATDGEDTDKLEPLVADLGEVDPFMTGD 329
           FA + ED  KLEPLVADLGEVDPFM  D
Sbjct: 301 FAPEDEDATKLEPLVADLGEVDPFMVAD 324

[Close]

BLAST of CSPI03G15360 vs. NCBI nr
Match: gi|596145900|ref|XP_007222647.1| (hypothetical protein PRUPE_ppa008555mg [Prunus persica])

HSP 1 Score: 489.6 bits (1259), Expect = 4.4e-135
Identity = 245/328 (74.70%), Postives = 280/328 (85.37%), Query Frame = 1


Query: 1   MSALSRGLISRFRLLSINSSASHSITTSSSSSSSRTNASCYYFFRAFSTQDLTQASDGSL 60
           MSALSRGL+SR RLLS+N + + S   +++++++    + Y+FFR F+++ L  AS+ + 
Sbjct: 1   MSALSRGLLSRLRLLSLNPTTTSSAAAANANATTSFTQTQYHFFRWFNSEALVDASEVAE 60

Query: 61  SASSIFEAKPGTMGSNSTRTGVIAVKCGMSALWDKWGARIPITVLWVDDNIVSQVKTIEK 120
             S + EAKPG M  +S RTG+IAVKCGM+A WDKWGAR+PITVLWVDDNIVSQVKT EK
Sbjct: 61  ERSRVIEAKPGAMSPSSKRTGLIAVKCGMTARWDKWGARVPITVLWVDDNIVSQVKTPEK 120

Query: 121 EGITALQIGCGQKKEKHLSKPELGHFRAQGVPLKRKLREFPVSQDALLPVGTEIGVRHFV 180
           EG  ALQIGCGQKK KHL+K E+GHFRAQGVPLKRKLREFPV++DALLPVG  IGVRHFV
Sbjct: 121 EGFPALQIGCGQKKAKHLTKSEVGHFRAQGVPLKRKLREFPVTKDALLPVGMSIGVRHFV 180

Query: 181 PGQYVDVTGISRGKGFQGVMKRHGFKGMPASHGASLSHRSGGSTGQRDAPGKVFKGRKMA 240
           PGQYVDVTGI+RGKGFQG MKRHGFKGMPASHGASLSHRS GSTGQRDAPGKVFKGRKMA
Sbjct: 181 PGQYVDVTGITRGKGFQGGMKRHGFKGMPASHGASLSHRSIGSTGQRDAPGKVFKGRKMA 240

Query: 241 GRMGGKQRTVKNVWIYKIDPARNLMWVKGPIPGAEGNFVFIKDAVYKKLNKSAILPFPTY 300
           GRMGGKQRTVKNVW+YKIDPARNLMWV+G +PGAEGNFVFI+DA YKK + S +LPFPTY
Sbjct: 241 GRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIRDAFYKKPDIS-LLPFPTY 300

Query: 301 FATDGEDTDKLEPLVADLGEVDPFMTGD 329
           FA + ED  KLE LVADLGEVDPFM  D
Sbjct: 301 FAPEDEDATKLETLVADLGEVDPFMVAD 327

The following BLAST results are available for this feature:

BLAST of CSPI03G15360 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RK3B_ARATH	5.7e-127	71.69	50S ribosomal protein L3-2, chloroplastic OS=Arabidopsis thaliana GN=RPL3B PE=2 ...	[more]
RL3_NOVAD	1.1e-58	50.45	50S ribosomal protein L3 OS=Novosphingobium aromaticivorans (strain DSM 12444 / ...	[more]
RL3_GLUOX	2.1e-57	52.23	50S ribosomal protein L3 OS=Gluconobacter oxydans (strain 621H) GN=rplC PE=3 SV=...	[more]
RL3_RUEPO	4.8e-57	53.18	50S ribosomal protein L3 OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / ...	[more]
RL3_ZYMMO	3.1e-56	46.86	50S ribosomal protein L3 OS=Zymomonas mobilis subsp. mobilis (strain ATCC 31821 ...	[more]

BLAST of CSPI03G15360 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAV0_CUCSA	2.3e-183	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171140 PE=3 SV=1	[more]
E5GC40_CUCME	5.1e-175	95.12	50S ribosomal protein l3 OS=Cucumis melo subsp. melo PE=3 SV=1	[more]
M5XEE9_PRUPE	3.0e-135	74.70	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008555mg PE=3 SV=1	[more]
A9PFR0_POPTR	2.1e-128	73.33	50S ribosomal protein L3-2 OS=Populus trichocarpa GN=POPTR_0008s21180g PE=2 SV=1	[more]
D7T692_VITVI	6.1e-128	72.26	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g00810 PE=3 SV=...	[more]

BLAST of CSPI03G15360 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G17465.1	3.2e-128	71.69	ribosomal protein L3 plastid	[more]
AT2G43030.1	1.4e-35	38.26	Ribosomal protein L3 family protein	[more]

BLAST of CSPI03G15360 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449459792\|ref\|XP_004147630.1\|	3.3e-183	100.00	PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Cucumis sativus]	[more]
gi\|659077038\|ref\|XP_008438999.1\|	7.3e-175	95.12	PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Cucumis melo]	[more]
gi\|1009163611\|ref\|XP_015900059.1\|	3.0e-136	75.61	PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Ziziphus jujuba]	[more]
gi\|645233773\|ref\|XP_008223504.1\|	4.4e-135	74.70	PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Prunus mume]	[more]
gi\|596145900\|ref\|XP_007222647.1\|	4.4e-135	74.70	hypothetical protein PRUPE_ppa008555mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000597	Ribosomal_L3
IPR009000	Transl_B-barrel_sf
IPR019926	Ribosomal_L3_CS
IPR019927	Ribosomal_L3_bac/org-type

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G15360.1	CSPI03G15360.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000597	Ribosomal protein L3	PFAM	PF00297	Ribosomal_L3	coord: 177..259 score: 6.1
IPR009000	Translation protein, beta-barrel domain	unknown	SSF50447	Translation proteins	coord: 75..305 score: 5.3
IPR019926	Ribosomal protein L3, conserved site	PROSITE	PS00474	RIBOSOMAL_L3	coord: 179..202 scor
IPR019927	Ribosomal protein L3, bacterial/organelle-type	HAMAP	MF_01325_B	Ribosomal_L3_B	coord: 79..285 score: 34
IPR019927	Ribosomal protein L3, bacterial/organelle-type	PANTHER	PTHR11229	50S RIBOSOMAL PROTEIN L3	coord: 65..325 score: 6.3E
IPR019927	Ribosomal protein L3, bacterial/organelle-type	TIGRFAMs	TIGR03625	TIGR03625	coord: 81..282 score: 2.1
None	No IPR available	GENE3D	G3DSA:2.40.30.10		coord: 82..123 score: 4.3E-5coord: 236..289 score: 4.
None	No IPR available	GENE3D	G3DSA:4.10.960.10		coord: 154..235 score: 1.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI03G15360	Cla021829	Watermelon (97103) v1	cpiwmB231
CSPI03G15360	Csa3G171140	Cucumber (Chinese Long) v2	cpicuB120
CSPI03G15360	MELO3C006752	Melon (DHL92) v3.5.1	cpimeB230
CSPI03G15360	ClCG05G006870	Watermelon (Charleston Gray)	cpiwcgB226
CSPI03G15360	MELO3C006752.2	Melon (DHL92) v3.6.1	cpimedB224
CSPI03G15360	CsaV3_3G015540	Cucumber (Chinese Long) v3	cpicucB144
CSPI03G15360	Cla97C05G088510	Watermelon (97103) v2	cpiwmbB209
CSPI03G15360	Bhi01G000820	Wax gourd	cpiwgoB269
CSPI03G15360	Cucsa.252160	Cucumber (Gy14) v1	cgycpiB383
CSPI03G15360	CmoCh06G015820	Cucurbita moschata (Rifu)	cmocpiB814
CSPI03G15360	Cp4.1LG08g05500	Cucurbita pepo (Zucchini)	cpecpiB861
CSPI03G15360	CsGy3G015430	Cucumber (Gy14) v2	cgybcpiB110
CSPI03G15360	Carg25657	Silver-seed gourd	carcpiB0774

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI03G15360	Melon (DHL92) v3.6.1	cpimedB165
CSPI03G15360	Silver-seed gourd	carcpiB0310
CSPI03G15360	Wax gourd	cpiwgoB253
CSPI03G15360	Cucurbita maxima (Rimu)	cmacpiB255
CSPI03G15360	Cucurbita maxima (Rimu)	cmacpiB826
CSPI03G15360	Cucurbita moschata (Rifu)	cmocpiB243
CSPI03G15360	Melon (DHL92) v3.5.1	cpimeB174
CSPI03G15360	Cucurbita pepo (Zucchini)	cpecpiB611
CSPI03G15360	Bottle gourd (USVL1VR-Ls)	cpilsiB208