CmoCh06G015820 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh06G015820
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	50S ribosomal protein l3
Location	Cmo_Chr06 : 11110765 .. 11114618 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCGAGTGGTCACCTTGCTTGCTGCCGCTCTCCCTCCATTACACTGCGTACAGAGAGAGAGAGAATGAAATTCCAGTGTCTCCGAGATCGGAATCTACTCTGAAACTGAGCCAAAGCTTTCCATTTTCTCTCTTGCATCTCCCCGTCTAAGCAATCTTTGCGAGTGTTCTTCACCATGTCGGCTTTATCCAGAGGTCTCATTTCTCGTTTTCGTCTTCTGTCGATCAATTCCGCCGCTTCACCGACAATTACTTCTTCTTCTTCTTCTTCTTCTTCATGGACGCATCCGTCTTGTTATTTCTTCTTCCGTACTTTCAGTACCGAGGGTTCGATTCAGGCTGGCGATGGCTCTTCGCTTTCTTCTCCGATTATTGAAGCTAAACCTGGTGTTATGAGCCCTAACTCGAAGCGTACGGGAGTCATTGCTGTCAAGTGTGGAATGTCGGCGCTGTGGGATAAATGGGGAGCTAGGGTACCCATCACTGTGCTCTGGGTTGATGATAATATTGTATCTCAGGTCAAGACTATTGAGAAAGAAGGCATCACAGCTCTCCAGGTACTGTTTAAATATCTTCTTCTCGTTTTCATTTCTGTCAGCGGAGTAGTTTTTGTTTATTATTCTTGTGAGCACTGCTTAGATGAAATTAGGAAGGGGACATTGTTGGCTCTGGTAGTCTTGGTTTCTGAATGGCATGGGATTTTGGCTTAATGATGCCGAGGAGTACATCTTTGGAATACTATTTGCTATGTTACTCTCTCTGTGAGAGGGATTTGAAGCTGTTACTCTGTTACTCCTACCCTTTCAATTCCATGGATTCTGGAACTATACTGAATTGAGCTGCACACTGTTGTTTTGGATCAGCATTTCACCTATGAAAGATATTCAGTTATCAGAATAGAAGTTGAACAGGGTATTTATGTACGTTCTGTCTTTCATATGGAAATCAGAGGCCAATGGGCCATTCCCTTTACTCGTACCGATCAGAATCTGACCTCACAAGAAATTGAGCAAAAGACTGCCGAATTGGCCTATTTCTTGCGTGTACCCATTGAAGTTTTTTGAAAAATGAAGTTCAGAATGAATGCTTTCTTAGTTCGTAGCAAGAGGTATATAACTGAAATGAAAGAATAATCCTTTTAATAGACAATAGTAATAGTATAACTTAACGGGAGTTTCTTCAGAATGCTCATTTGAGACAAAGCAGACGAATACGGATTAGACAGAAAACTGTCTTGGTCCGAAATTTTGTGGCTTCCATTGTTACACTTAACTAGATGTGATTATATGACCTTTTTGTTCTTAATAACTGGGTTATCGAGGTTCAAATTCTCGTATCAAACTCATTGCCTACCTCCCTAATATTTGGGAAGCAACAAGAGTTTTGATTATTACTTACACTTACCATTGTTGATTTCACCATTTCTAAGGGGAAAAAAAGTTGTCTTGACCGTTAGACCATATGTATGAGATCTCTTTTTTCAGTTCTTACAAATTTTATGGCATAGGACTTGCATTTATTGACCAAATGTGCTATGCTATGGTGCTAGTTAGATTGGCTGTGGACAGAAGAAGGCGAAGCATTTGACAAAACCCGAGGTAGGTCATTTTAGGGCTCAAGGTGTTCCATTGAAGAGGAAACTGAGGGAGTTTCCAGTGACAGAAGACGCCCTTCTTCCAGTTGGTACGACAATTGGTGTTCGTCATTTTGTCCCTGGACAGTTTATTGATGTGACAGGAATAACAAGAGGGAAAGGTTTCCAGGTGAGTCCATTGCAGCATTCCTTCATTAATTTTTTAGCTCACAGCCTCTACTCCTATTAGGTTTCTTTCATTCCCTTGTATTTGTTAATATGGTTAAGTTAATTACATATTCAAAACACATGAATGTTATTGTGGGAACATAAATGGTTAAGTTAATTGCATATTCAAGCAAATATTTTCAATAAACACCGTAACCCAACTCTAATATTTTACCATGATTTACCTAACTCGAACTTGTTTTGTTTGGCTTGAATGCTTAATTATCTAACATTCTGCATGATCTGCGGGGTGAAATTTGAACATCAAAGTCACAGTGCTGTACATGTGTATGTTATCACAAGACAATACGGACAATTTCTCGATGAGATCACGTGCATCCTCAAGATGACAAGAATTAAAACAATCACACAATTCATATATATAAGTATAAACACGAAAAATATTAAGGGCTCTATACAAACCCTAGGAGAAACTTGTGTAGCTGATAACTTATGTTGATCTTTGATCTTTGCTTTGTTTCTGTTTTTCATGTTTTTGCTAATCTGGTTGTATGTTTGTGTTCTAGACATAAAAAAGCTGTTTTCTTTCCATGTGTAAATGGTATAATATCTTTTCCATAAAATGATGTCTCTTATGGCTAATCTTTTTTCTTATTGTTCACAGGGAGTGATGAAAAAGCATGGATTTAAAGGAATGCCAGCATCCCACGGAGCATCATTATCCCACAGAAGCCTCGGTTCTACAGGTCAGAGGGATGCTCCTGGGAAGGTGTGTTTATCTTTTCATGGTGACACTCATTTTTAAGATTGAGTGGTTATTTCAGTTCTCAAATGCATTTTAAGGCTACCCAAAACTCACATCTGGTTGAAACTCGAGCATTGAAGATATCCGCGTAGTAGTAGGGTAATATATCGTGCTAGCCTACTTCGACATAGGACTTTGATTCTGTCTCCTTCGTTTCCTGTCAATGTGCAAGGTTCTTTCTCAATGAATGGAGATTTTAGAGAATAGAAACAAGAATTTGATGGGACTAAACAAAAAGGAATAACTTGCACGGTAAAAGGACGTTTTCTGGATTTATCTATGCTTGTGCAATGAATCAATATCGAGTAATTACTATATTGTAATAGAACAAGCTTGAATTGTTTTTTTAATACCAACTTTATCTGCAGTAGAATTACTATGTTGTAATAGAACACGCTTTGGTTTAGTCTGATTTATTTCTTGAATCGTTTTTATGGTCTGTTATGTTGCGAGTTCTACTCCGTTTTCTCTGTATGCCATGTCGTATACGACTGAGAAACGTGTTCTTATTTTCCAGGTTTTTAAAGGTAAGAAGATGGCTGGTCGTATGGGTGGGAAGCAGAGAACTGTGAAAAATGTGTGGGTCTACAAAATTGATCCTGCAAGAAACTTGATGTGGGTTAGAGGACAAGTAAGTTTCTTTCAATTTACACATAAATATGACACTCTTGCGACATTGTGATCTGAGATTATTTGCTGCACAAACTTCACCTTTCAGGTCCCGGGCGCCGAAGGAAACTTTGTATTTATAAAAGACGCCTTCTACAAGAAACCCGACAAGTCGATCCTTCCATTCCCTACCTACTTTGCGAACAACGACGAGGACACAGAGACGTTGGAACCTCTCGTTGCTGATCTTGGAGAAGTAGATCCATTCATGGTTGGAGAATGATAGGGAGTTGGGCTTTTCAGTGCAAGTTCTTCGATTTCGCTCTGTTTTTTTCGATCTTTTCAGCTACTGATGACCCTTTTTCGAGTAGAAACGCAGCTGGAGGTTCTGTATGAGGCAATCCAATCTCCTTATACGATGGGAATTTACCATTTACTTTTCTTTCAACTCAAAACTTGTACCGGAAAATGCCATTTTGAAATAAAGGATAGAGAAAAAAGCTATGATTATTGAGGTTTTTTGTTGATGTTTATGTGAACTTGGAGAAAGAGATTGTTTATGGCTGCCCTAGCCTCTCTTCATTTGAACTCATTTTCATCTTCTACTCTCTGAAATTTCAACTCTAGATTCTTAAAATTTTGTTGAAATTCCTCAACCCCACCTTAAATTCTGTTAACC

mRNA sequence

CCCGAGTGGTCACCTTGCTTGCTGCCGCTCTCCCTCCATTACACTGCGTACAGAGAGAGAGAGAATGAAATTCCAGTGTCTCCGAGATCGGAATCTACTCTGAAACTGAGCCAAAGCTTTCCATTTTCTCTCTTGCATCTCCCCGTCTAAGCAATCTTTGCGAGTGTTCTTCACCATGTCGGCTTTATCCAGAGGTCTCATTTCTCGTTTTCGTCTTCTGTCGATCAATTCCGCCGCTTCACCGACAATTACTTCTTCTTCTTCTTCTTCTTCTTCATGGACGCATCCGTCTTGTTATTTCTTCTTCCGTACTTTCAGTACCGAGGGTTCGATTCAGGCTGGCGATGGCTCTTCGCTTTCTTCTCCGATTATTGAAGCTAAACCTGGTGTTATGAGCCCTAACTCGAAGCGTACGGGAGTCATTGCTGTCAAGTGTGGAATGTCGGCGCTGTGGGATAAATGGGGAGCTAGGGTACCCATCACTGTGCTCTGGGTTGATGATAATATTGTATCTCAGGTCAAGACTATTGAGAAAGAAGGCATCACAGCTCTCCAGATTGGCTGTGGACAGAAGAAGGCGAAGCATTTGACAAAACCCGAGGTAGGTCATTTTAGGGCTCAAGGTGTTCCATTGAAGAGGAAACTGAGGGAGTTTCCAGTGACAGAAGACGCCCTTCTTCCAGTTGGTACGACAATTGGTGTTCGTCATTTTGTCCCTGGACAGTTTATTGATGTGACAGGAATAACAAGAGGGAAAGGTTTCCAGGGAGTGATGAAAAAGCATGGATTTAAAGGAATGCCAGCATCCCACGGAGCATCATTATCCCACAGAAGCCTCGGTTCTACAGGTCAGAGGGATGCTCCTGGGAAGGTTTTTAAAGGTAAGAAGATGGCTGGTCGTATGGGTGGGAAGCAGAGAACTGTGAAAAATGTGTGGGTCTACAAAATTGATCCTGCAAGAAACTTGATGTGGGTTAGAGGACAAGTCCCGGGCGCCGAAGGAAACTTTGTATTTATAAAAGACGCCTTCTACAAGAAACCCGACAAGTCGATCCTTCCATTCCCTACCTACTTTGCGAACAACGACGAGGACACAGAGACGTTGGAACCTCTCGTTGCTGATCTTGGAGAAGTAGATCCATTCATGGTTGGAGAATGATAGGGAGTTGGGCTTTTCAGTGCAAGTTCTTCGATTTCGCTCTGTTTTTTTCGATCTTTTCAGCTACTGATGACCCTTTTTCGAGTAGAAACGCAGCTGGAGGTTCTGTATGAGGCAATCCAATCTCCTTATACGATGGGAATTTACCATTTACTTTTCTTTCAACTCAAAACTTGTACCGGAAAATGCCATTTTGAAATAAAGGATAGAGAAAAAAGCTATGATTATTGAGGTTTTTTGTTGATGTTTATGTGAACTTGGAGAAAGAGATTGTTTATGGCTGCCCTAGCCTCTCTTCATTTGAACTCATTTTCATCTTCTACTCTCTGAAATTTCAACTCTAGATTCTTAAAATTTTGTTGAAATTCCTCAACCCCACCTTAAATTCTGTTAACC

Coding sequence (CDS)

ATGTCGGCTTTATCCAGAGGTCTCATTTCTCGTTTTCGTCTTCTGTCGATCAATTCCGCCGCTTCACCGACAATTACTTCTTCTTCTTCTTCTTCTTCTTCATGGACGCATCCGTCTTGTTATTTCTTCTTCCGTACTTTCAGTACCGAGGGTTCGATTCAGGCTGGCGATGGCTCTTCGCTTTCTTCTCCGATTATTGAAGCTAAACCTGGTGTTATGAGCCCTAACTCGAAGCGTACGGGAGTCATTGCTGTCAAGTGTGGAATGTCGGCGCTGTGGGATAAATGGGGAGCTAGGGTACCCATCACTGTGCTCTGGGTTGATGATAATATTGTATCTCAGGTCAAGACTATTGAGAAAGAAGGCATCACAGCTCTCCAGATTGGCTGTGGACAGAAGAAGGCGAAGCATTTGACAAAACCCGAGGTAGGTCATTTTAGGGCTCAAGGTGTTCCATTGAAGAGGAAACTGAGGGAGTTTCCAGTGACAGAAGACGCCCTTCTTCCAGTTGGTACGACAATTGGTGTTCGTCATTTTGTCCCTGGACAGTTTATTGATGTGACAGGAATAACAAGAGGGAAAGGTTTCCAGGGAGTGATGAAAAAGCATGGATTTAAAGGAATGCCAGCATCCCACGGAGCATCATTATCCCACAGAAGCCTCGGTTCTACAGGTCAGAGGGATGCTCCTGGGAAGGTTTTTAAAGGTAAGAAGATGGCTGGTCGTATGGGTGGGAAGCAGAGAACTGTGAAAAATGTGTGGGTCTACAAAATTGATCCTGCAAGAAACTTGATGTGGGTTAGAGGACAAGTCCCGGGCGCCGAAGGAAACTTTGTATTTATAAAAGACGCCTTCTACAAGAAACCCGACAAGTCGATCCTTCCATTCCCTACCTACTTTGCGAACAACGACGAGGACACAGAGACGTTGGAACCTCTCGTTGCTGATCTTGGAGAAGTAGATCCATTCATGGTTGGAGAATGA

Homology

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BLAST of CmoCh06G015820 vs. Swiss-Prot
Match: RK3B_ARATH (50S ribosomal protein L3-2, chloroplastic OS=Arabidopsis thaliana GN=RPL3B PE=2 SV=1)

HSP 1 Score: 485.3 bits (1248), Expect = 5.1e-136
Identity = 248/331 (74.92%), Postives = 274/331 (82.78%), Query Frame = 1


Query: 1   MSALSRGLISRF-RLLSINSAASPTITSSSSSSSSWTHPSCYFFFRTFSTEGSIQAGDGS 60
           M+A+ RGL+SR  + LSI S        + SSS S  H S +F  R FS++  +  G GS
Sbjct: 1   MAAVPRGLLSRINQFLSIRSI-------TPSSSESLPHCSSFFLIRRFSSDTGLMDGGGS 60

Query: 61  SL---SSPIIEAKPGVMSPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVK 120
            +    + IIEAK G MS  SKRTG+IAVKCGM+ALWDKWG R+PI++LWVDDNIVSQVK
Sbjct: 61  DIIGAQTRIIEAKQGEMSSRSKRTGIIAVKCGMTALWDKWGKRIPISILWVDDNIVSQVK 120

Query: 121 TIEKEGITALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGV 180
           T+EKEGI ALQIGCGQKK KHL+K  VGHFRAQGVPLKRKLREFPVTEDALLPVGT++GV
Sbjct: 121 TVEKEGIFALQIGCGQKKPKHLSKAVVGHFRAQGVPLKRKLREFPVTEDALLPVGTSLGV 180

Query: 181 RHFVPGQFIDVTGITRGKGFQGVMKKHGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKG 240
           RHFVPGQ++DVTGITRGKGFQG MK+HGF GMPASHGASLSHRS GSTGQRDAPGKVFKG
Sbjct: 181 RHFVPGQYVDVTGITRGKGFQGCMKRHGFSGMPASHGASLSHRSGGSTGQRDAPGKVFKG 240

Query: 241 KKMAGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAFYKKPDKSILPF 300
           +KMAGRMG  QRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDA+ KKPD S LPF
Sbjct: 241 RKMAGRMGADQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAWCKKPDISKLPF 300

Query: 301 PTYFANNDEDTETLEPLVADLGEVDPFMVGE 328
           PTY A  DED   LEPLVADLGEVDPFM+ E
Sbjct: 301 PTYLAPEDEDPSELEPLVADLGEVDPFMLAE 324

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BLAST of CmoCh06G015820 vs. Swiss-Prot
Match: RL3_ZYMMO (50S ribosomal protein L3 OS=Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) GN=rplC PE=3 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 1.2e-57
Identity = 117/228 (51.32%), Postives = 156/228 (68.42%), Query Frame = 1


Query: 79  RTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEKEGITALQIGCGQKKAKHL 138
           RTGVIA K GM+ L+ + G  VP+TVL ++D  V  VK  +++G  A+Q+G G  KAK++
Sbjct: 2   RTGVIAKKVGMTRLFQEDGRHVPVTVLKLEDVQVVAVKNKDQDGYVAVQLGAGSAKAKNV 61

Query: 139 TKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFVPGQFIDVTGITRGKGFQG 198
           TKP  GHF    V LK KL EFPV+EDA+L VGT+I   HF+ GQ +D++G T+GKGF G
Sbjct: 62  TKPVRGHFAKAEVELKAKLVEFPVSEDAVLEVGTSISADHFIAGQLVDISGQTQGKGFAG 121

Query: 199 VMKKHGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKMAGRMGGKQRTVKNVWVYKI 258
            MK+ GF G+ A+HG SLSHRS GSTG R  PG+VFK KKMAG MG +QRT +N+ V   
Sbjct: 122 AMKRWGFGGLRATHGVSLSHRSHGSTGNRQDPGRVFKNKKMAGHMGARQRTQQNLEVIST 181

Query: 259 DPARNLMWVRGQVPGAEGNFVFIKDAF-YKKPDKSILPFPTYFANNDE 306
           D  R+L++VRG VPG++G ++ I+DA    +P  +  P     AN +E
Sbjct: 182 DAERDLIFVRGSVPGSKGAWLIIRDAVKVARPTDAPYPAAIKAANGNE 229

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BLAST of CmoCh06G015820 vs. Swiss-Prot
Match: RL3_NOVAD (50S ribosomal protein L3 OS=Novosphingobium aromaticivorans (strain DSM 12444 / F199) GN=rplC PE=3 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 4.7e-57
Identity = 108/206 (52.43%), Postives = 149/206 (72.33%), Query Frame = 1


Query: 79  RTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEKEGITALQIGCGQKKAKHL 138
           RTGVIA K GM+ L+ + G  VP+TVL +++  V  V+T E++G  ALQ+G G+ K K++
Sbjct: 2   RTGVIAKKVGMTRLFQEDGRHVPVTVLSLENCQVVSVRTAERDGYVALQLGAGEAKQKNV 61

Query: 139 TKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFVPGQFIDVTGITRGKGFQG 198
            KP+  HF    VPLK ++ EF V +DALL VG+TI   HFVPGQ++D+TG T+GKGFQG
Sbjct: 62  AKPQREHFAKAEVPLKMEVAEFRVADDALLDVGSTIAASHFVPGQYVDITGQTQGKGFQG 121

Query: 199 VMKKHGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKMAGRMGGKQRTVKNVWVYKI 258
            MK+ GF GM A+HG S+SHR+ GSTG R  PG+VFK KKMAG MG +QRT +N+ V + 
Sbjct: 122 AMKRWGFGGMRATHGVSISHRAHGSTGNRQDPGRVFKNKKMAGHMGDRQRTQQNLEVVRT 181

Query: 259 DPARNLMWVRGQVPGAEGNFVFIKDA 285
           D  R L++V+G VPG++  ++ ++DA
Sbjct: 182 DDERGLIFVKGSVPGSKNAWLLVRDA 207

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BLAST of CmoCh06G015820 vs. Swiss-Prot
Match: RL3_GLUOX (50S ribosomal protein L3 OS=Gluconobacter oxydans (strain 621H) GN=rplC PE=3 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 8.1e-57
Identity = 115/219 (52.51%), Postives = 148/219 (67.58%), Query Frame = 1


Query: 79  RTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEKEGITALQIGCGQKKAKHL 138
           RTG+IA K GM+ L+ + G  VP+TVL +D+  V   +T E++G TA+Q+G G  K K++
Sbjct: 2   RTGLIAKKLGMTRLFKEDGTHVPVTVLHLDNVEVVDARTNERDGYTAIQLGLGNAKVKNV 61

Query: 139 TKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFVPGQFIDVTGITRGKGFQG 198
           TK   GHF    V  KR L EF V+EDALL  GT +   HFV GQ +DVTG ++GKGF G
Sbjct: 62  TKANRGHFARTKVEPKRHLAEFRVSEDALLEAGTKLSAAHFVVGQKVDVTGQSKGKGFAG 121

Query: 199 VMKKHGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKMAGRMGGKQRTVKNVWVYKI 258
           VMK+H F G+ ASHG S+SHRS GSTGQR  PGKVFKGKKMAG MG ++ T  N+ +  +
Sbjct: 122 VMKRHNFAGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAGHMGDERVTTLNLEIAAV 181

Query: 259 DPARNLMWVRGQVPGAEGNFVFIKDAFYKKPDKSILPFP 298
           D  RNL+ VRG +PGA+   V I+DA  KK   +  P+P
Sbjct: 182 DEERNLIMVRGAIPGAKNGLVLIRDAI-KKARHADAPYP 219

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BLAST of CmoCh06G015820 vs. Swiss-Prot
Match: RL3_RUEPO (50S ribosomal protein L3 OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) GN=rplC PE=3 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 5.8e-55
Identity = 112/219 (51.14%), Postives = 149/219 (68.04%), Query Frame = 1


Query: 79  RTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEKEGITALQIGCGQKKAKHL 138
           R+G+IA K GM+ L+ + G ++P+TVL +D+  V   +T EK+G TA+Q+G G  K K +
Sbjct: 2   RSGIIAKKVGMTRLFMEDGKQIPVTVLQLDNLQVVAQRTTEKDGYTAVQLGAGTPKIKRV 61

Query: 139 TKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFVPGQFIDVTGITRGKGFQG 198
           +K   GHF AQ V  KRKL EF V+EDAL+ VG  I   HF+ GQ +DV+G + GKGF G
Sbjct: 62  SKAMRGHFAAQKVEPKRKLAEFRVSEDALIEVGAEISAEHFLTGQKVDVSGTSIGKGFAG 121

Query: 199 VMKKHGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKMAGRMGGKQRTVKNVWVYKI 258
            MK+H F G+ ASHG S+SHRS GSTGQ   PG+VFKGKKMAG MG  + T +N+ V K 
Sbjct: 122 AMKRHNFGGLRASHGVSISHRSHGSTGQCQDPGRVFKGKKMAGHMGAARVTTQNLEVVKT 181

Query: 259 DPARNLMWVRGQVPGAEGNFVFIKDAFYKKPDKSILPFP 298
           D  R L++++G VPG +  +V +KDA  KK  +  LPFP
Sbjct: 182 DAERGLVFIKGAVPGPKSGWVTVKDAVKKKAPEG-LPFP 219

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BLAST of CmoCh06G015820 vs. TrEMBL
Match: A0A0A0LAV0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171140 PE=3 SV=1)

HSP 1 Score: 555.8 bits (1431), Expect = 3.4e-155
Identity = 277/328 (84.45%), Postives = 301/328 (91.77%), Query Frame = 1


Query: 1   MSALSRGLISRFRLLSINSAASPTITSSSSSSSSWTHPSCYFFFRTFSTEGSIQAGDGSS 60
           MSALSRGLISRFRLLSINS+AS +IT+SSSSSSS T+ SCY+FFR FST+   QA DGS 
Sbjct: 1   MSALSRGLISRFRLLSINSSASHSITTSSSSSSSRTNASCYYFFRAFSTQDLTQASDGSL 60

Query: 61  LSSPIIEAKPGVMSPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEK 120
            +S I EAKPG M  NS RTGVIAVKCGMSALWDKWGAR+PITVLWVDDNIVSQVKTIEK
Sbjct: 61  SASSIFEAKPGTMGSNSTRTGVIAVKCGMSALWDKWGARIPITVLWVDDNIVSQVKTIEK 120

Query: 121 EGITALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFV 180
           EGITALQIGCGQKK KHL+KPE+GHFRAQGVPLKRKLREFPV++DALLPVGT IGVRHFV
Sbjct: 121 EGITALQIGCGQKKEKHLSKPELGHFRAQGVPLKRKLREFPVSQDALLPVGTEIGVRHFV 180

Query: 181 PGQFIDVTGITRGKGFQGVMKKHGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKMA 240
           PGQ++DVTGI+RGKGFQGVMK+HGFKGMPASHGASLSHRS GSTGQRDAPGKVFKG+KMA
Sbjct: 181 PGQYVDVTGISRGKGFQGVMKRHGFKGMPASHGASLSHRSGGSTGQRDAPGKVFKGRKMA 240

Query: 241 GRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAFYKKPDKS-ILPFPTY 300
           GRMGGKQRTVKNVW+YKIDPARNLMWV+G +PGAEGNFVFIKDA YKK +KS ILPFPTY
Sbjct: 241 GRMGGKQRTVKNVWIYKIDPARNLMWVKGPIPGAEGNFVFIKDAVYKKLNKSAILPFPTY 300

Query: 301 FANNDEDTETLEPLVADLGEVDPFMVGE 328
           FA + EDT+ LEPLVADLGEVDPFM G+
Sbjct: 301 FATDGEDTDKLEPLVADLGEVDPFMTGD 328

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BLAST of CmoCh06G015820 vs. TrEMBL
Match: E5GC40_CUCME (50S ribosomal protein l3 OS=Cucumis melo subsp. melo PE=3 SV=1)

HSP 1 Score: 549.7 bits (1415), Expect = 2.5e-153
Identity = 272/328 (82.93%), Postives = 301/328 (91.77%), Query Frame = 1


Query: 1   MSALSRGLISRFRLLSINSAASPTITSSSSSSSSWTHPSCYFFFRTFSTEGSIQAGDGSS 60
           MSALSRGLISR RLLSINS AS ++TSSS SSSS T+ SCY+FFR FST+   QA DGS 
Sbjct: 1   MSALSRGLISRLRLLSINSGASHSVTSSSYSSSSRTNASCYYFFRAFSTQDLTQASDGSL 60

Query: 61  LSSPIIEAKPGVMSPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEK 120
            +S IIEAKPG MS NS+RTGVIAVKCGMSALWDKWGAR+PITVLWVDDNIVSQVKTIEK
Sbjct: 61  PASSIIEAKPGTMSSNSRRTGVIAVKCGMSALWDKWGARIPITVLWVDDNIVSQVKTIEK 120

Query: 121 EGITALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFV 180
           EGITALQIGCGQKK KHL+KPE+GHFRAQGVPLKRKL+EFPV++DALLPVGT IG RHFV
Sbjct: 121 EGITALQIGCGQKKEKHLSKPELGHFRAQGVPLKRKLKEFPVSQDALLPVGTEIGARHFV 180

Query: 181 PGQFIDVTGITRGKGFQGVMKKHGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKMA 240
           PGQ++DVTGI+RGKGFQGVMK+HGFKGMPASHGASLSHRS GSTGQRDAPGKVFKG+KMA
Sbjct: 181 PGQYVDVTGISRGKGFQGVMKRHGFKGMPASHGASLSHRSGGSTGQRDAPGKVFKGRKMA 240

Query: 241 GRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAFYKKPDKS-ILPFPTY 300
           GRMGGKQRTVKNVW+YKIDPARNL+WV+G +PGAEG+FVFIKDA YK+ +KS ILPFPTY
Sbjct: 241 GRMGGKQRTVKNVWIYKIDPARNLIWVKGPIPGAEGSFVFIKDAMYKRLNKSAILPFPTY 300

Query: 301 FANNDEDTETLEPLVADLGEVDPFMVGE 328
           FA + EDT+ LEPLVADLGEVDPFM+G+
Sbjct: 301 FATDGEDTDKLEPLVADLGEVDPFMIGD 328

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BLAST of CmoCh06G015820 vs. TrEMBL
Match: M5XEE9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008555mg PE=3 SV=1)

HSP 1 Score: 519.6 bits (1337), Expect = 2.7e-144
Identity = 256/327 (78.29%), Postives = 288/327 (88.07%), Query Frame = 1


Query: 1   MSALSRGLISRFRLLSINSAASPTITSSSSSSSSWTHPSCYFFFRTFSTEGSIQAGDGSS 60
           MSALSRGL+SR RLLS+N   + +  ++++++++    + Y FFR F++E  + A + + 
Sbjct: 1   MSALSRGLLSRLRLLSLNPTTTSSAAAANANATTSFTQTQYHFFRWFNSEALVDASEVAE 60

Query: 61  LSSPIIEAKPGVMSPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEK 120
             S +IEAKPG MSP+SKRTG+IAVKCGM+A WDKWGARVPITVLWVDDNIVSQVKT EK
Sbjct: 61  ERSRVIEAKPGAMSPSSKRTGLIAVKCGMTARWDKWGARVPITVLWVDDNIVSQVKTPEK 120

Query: 121 EGITALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFV 180
           EG  ALQIGCGQKKAKHLTK EVGHFRAQGVPLKRKLREFPVT+DALLPVG +IGVRHFV
Sbjct: 121 EGFPALQIGCGQKKAKHLTKSEVGHFRAQGVPLKRKLREFPVTKDALLPVGMSIGVRHFV 180

Query: 181 PGQFIDVTGITRGKGFQGVMKKHGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKMA 240
           PGQ++DVTGITRGKGFQG MK+HGFKGMPASHGASLSHRS+GSTGQRDAPGKVFKG+KMA
Sbjct: 181 PGQYVDVTGITRGKGFQGGMKRHGFKGMPASHGASLSHRSIGSTGQRDAPGKVFKGRKMA 240

Query: 241 GRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAFYKKPDKSILPFPTYF 300
           GRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFI+DAFYKKPD S+LPFPTYF
Sbjct: 241 GRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIRDAFYKKPDISLLPFPTYF 300

Query: 301 ANNDEDTETLEPLVADLGEVDPFMVGE 328
           A  DED   LE LVADLGEVDPFMV +
Sbjct: 301 APEDEDATKLETLVADLGEVDPFMVAD 327

[Close]

BLAST of CmoCh06G015820 vs. TrEMBL
Match: D7T692_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g00810 PE=3 SV=1)

HSP 1 Score: 504.2 bits (1297), Expect = 1.2e-139
Identity = 255/327 (77.98%), Postives = 269/327 (82.26%), Query Frame = 1


Query: 1   MSALSRGLISRFRLLSINSAASPTITSSSSSSSSWTHPSCYFFFRTFSTEGSIQAGDGSS 60
           MSA SRGLIS FR LSI    S  + S              + FR F +E  I       
Sbjct: 1   MSAASRGLISGFRFLSIGPRTSAIVAS--------------YQFRRFGSESLIDE----- 60

Query: 61  LSSPIIEAKPGVMSPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEK 120
               II  KPGVMSPNSKRTG IAVKCGMSALWDKWGARVPITVLW+DDNIVSQVKT EK
Sbjct: 61  -EPRIIVPKPGVMSPNSKRTGAIAVKCGMSALWDKWGARVPITVLWLDDNIVSQVKTFEK 120

Query: 121 EGITALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFV 180
           EG+ ALQ+GCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFV
Sbjct: 121 EGLNALQVGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFV 180

Query: 181 PGQFIDVTGITRGKGFQGVMKKHGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKMA 240
           PGQ++DVTGITRGKGFQG MK+ GFKGMPASHGASLSHRS+GSTGQRDAPGKVFKGKKM 
Sbjct: 181 PGQYVDVTGITRGKGFQGGMKRWGFKGMPASHGASLSHRSIGSTGQRDAPGKVFKGKKMP 240

Query: 241 GRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAFYKKPDKSILPFPTYF 300
           GRMGGKQRTVKNVWVYKIDP RNLMWVRGQVPGAEGNFVFIKDA YKKPD SILPFPTYF
Sbjct: 241 GRMGGKQRTVKNVWVYKIDPTRNLMWVRGQVPGAEGNFVFIKDAVYKKPDASILPFPTYF 300

Query: 301 ANNDEDTETLEPLVADLGEVDPFMVGE 328
              DED   LEP+VADLG++DPFMV +
Sbjct: 301 PAEDEDPTVLEPIVADLGDIDPFMVAD 307

[Close]

BLAST of CmoCh06G015820 vs. TrEMBL
Match: A0A067K860_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19089 PE=3 SV=1)

HSP 1 Score: 499.2 bits (1284), Expect = 3.8e-138
Identity = 255/328 (77.74%), Postives = 282/328 (85.98%), Query Frame = 1


Query: 1   MSALSRGLISRFR-LLSINSAASPTITSSSSSSSSWTHPSCYFFFRTFSTEGSIQAGDGS 60
           MSA SRGL+SRF  LLS++     T T+S S++SS      Y+F R FST+  +   +  
Sbjct: 1   MSAQSRGLVSRFHHLLSLS-----TKTTSPSAASS-----LYYFVRRFSTDSLLDGYEIQ 60

Query: 61  SLSSPIIEAKPGVMSPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIE 120
           +  S IIE KPG+M+PNSKRTG+IA+KCGMSALWDKWG R+PITVLWVDDNIV+QVKT+E
Sbjct: 61  NRESRIIEPKPGIMTPNSKRTGLIALKCGMSALWDKWGERIPITVLWVDDNIVTQVKTVE 120

Query: 121 KEGITALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHF 180
           KEG  ALQIG GQKKAKHLTKPEVGHFRAQ VPLKRKL+EFPVTEDALLPVGT+IGVRHF
Sbjct: 121 KEGHFALQIGYGQKKAKHLTKPEVGHFRAQDVPLKRKLKEFPVTEDALLPVGTSIGVRHF 180

Query: 181 VPGQFIDVTGITRGKGFQGVMKKHGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKM 240
           VPGQF+DVTGITRGKGFQGVMK+HGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKM
Sbjct: 181 VPGQFVDVTGITRGKGFQGVMKRHGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKM 240

Query: 241 AGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAFYKKPDKSILPFPTY 300
            GRMG +QRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDA YKKPD S+LPFPTY
Sbjct: 241 PGRMGAEQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAVYKKPDVSMLPFPTY 300

Query: 301 FANNDEDTETLEPLVADLGEVDPFMVGE 328
           FA  D   ET EPLVA+LGE+DPFM  +
Sbjct: 301 FAAED---ETSEPLVAELGEIDPFMAAD 315

[Close]

BLAST of CmoCh06G015820 vs. TAIR10
Match: AT3G17465.1 (AT3G17465.1 ribosomal protein L3 plastid)

HSP 1 Score: 485.3 bits (1248), Expect = 2.9e-137
Identity = 248/331 (74.92%), Postives = 274/331 (82.78%), Query Frame = 1


Query: 1   MSALSRGLISRF-RLLSINSAASPTITSSSSSSSSWTHPSCYFFFRTFSTEGSIQAGDGS 60
           M+A+ RGL+SR  + LSI S        + SSS S  H S +F  R FS++  +  G GS
Sbjct: 1   MAAVPRGLLSRINQFLSIRSI-------TPSSSESLPHCSSFFLIRRFSSDTGLMDGGGS 60

Query: 61  SL---SSPIIEAKPGVMSPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVK 120
            +    + IIEAK G MS  SKRTG+IAVKCGM+ALWDKWG R+PI++LWVDDNIVSQVK
Sbjct: 61  DIIGAQTRIIEAKQGEMSSRSKRTGIIAVKCGMTALWDKWGKRIPISILWVDDNIVSQVK 120

Query: 121 TIEKEGITALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGV 180
           T+EKEGI ALQIGCGQKK KHL+K  VGHFRAQGVPLKRKLREFPVTEDALLPVGT++GV
Sbjct: 121 TVEKEGIFALQIGCGQKKPKHLSKAVVGHFRAQGVPLKRKLREFPVTEDALLPVGTSLGV 180

Query: 181 RHFVPGQFIDVTGITRGKGFQGVMKKHGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKG 240
           RHFVPGQ++DVTGITRGKGFQG MK+HGF GMPASHGASLSHRS GSTGQRDAPGKVFKG
Sbjct: 181 RHFVPGQYVDVTGITRGKGFQGCMKRHGFSGMPASHGASLSHRSGGSTGQRDAPGKVFKG 240

Query: 241 KKMAGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAFYKKPDKSILPF 300
           +KMAGRMG  QRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDA+ KKPD S LPF
Sbjct: 241 RKMAGRMGADQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAWCKKPDISKLPF 300

Query: 301 PTYFANNDEDTETLEPLVADLGEVDPFMVGE 328
           PTY A  DED   LEPLVADLGEVDPFM+ E
Sbjct: 301 PTYLAPEDEDPSELEPLVADLGEVDPFMLAE 324

[Close]

BLAST of CmoCh06G015820 vs. TAIR10
Match: AT2G43030.1 (AT2G43030.1 Ribosomal protein L3 family protein)

HSP 1 Score: 155.2 bits (391), Expect = 6.8e-38
Identity = 91/229 (39.74%), Postives = 134/229 (58.52%), Query Frame = 1


Query: 62  SSPIIEAKPG----VMSPNSKRTGVIAVKCGMSALWDKWGARVPITVL-WVDDNIVSQVK 121
           SS +I++ P     V S      GV+  K GM + +++ G  VP+TV+ + + NIV+Q+K
Sbjct: 34  SSLLIKSSPKTRFVVSSSMEAGIGVMGSKLGMMSFFEEDGTVVPVTVVGFREGNIVTQIK 93

Query: 122 TIEKEGITALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTE-DALLPVGTTIG 181
           T+  +G  A+QIG  + + K LTKPE GH +  G    R L+EF +T  +   P    + 
Sbjct: 94  TLATDGYDAVQIGYRRVRDKKLTKPETGHLQKAGTIPMRHLQEFRLTNIEGFEPNQKLVF 153

Query: 182 VRHFVPGQFIDVTGITRGKGFQGVMKKHGFKGMPASHGASLSHRSLGSTGQRDAPGKVFK 241
              F  G  +DV G T GKGFQG +K+H FK    +HG S SHR+LGS G    PG+V+K
Sbjct: 154 DEIFKEGDLVDVAGTTIGKGFQGGIKRHHFKRGQMTHG-SKSHRALGSIGAGTTPGRVYK 213

Query: 242 GKKMAGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDA 285
           GKKM GRMGG +  ++ + + K+D   N++ ++G +PG  GN + I  A
Sbjct: 214 GKKMPGRMGGTRTKIRKLKIVKVDKELNVVMIKGALPGKPGNLLRITPA 261

[Close]

BLAST of CmoCh06G015820 vs. NCBI nr
Match: gi|449459792|ref|XP_004147630.1| (PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Cucumis sativus])

HSP 1 Score: 555.8 bits (1431), Expect = 4.9e-155
Identity = 277/328 (84.45%), Postives = 301/328 (91.77%), Query Frame = 1


Query: 1   MSALSRGLISRFRLLSINSAASPTITSSSSSSSSWTHPSCYFFFRTFSTEGSIQAGDGSS 60
           MSALSRGLISRFRLLSINS+AS +IT+SSSSSSS T+ SCY+FFR FST+   QA DGS 
Sbjct: 1   MSALSRGLISRFRLLSINSSASHSITTSSSSSSSRTNASCYYFFRAFSTQDLTQASDGSL 60

Query: 61  LSSPIIEAKPGVMSPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEK 120
            +S I EAKPG M  NS RTGVIAVKCGMSALWDKWGAR+PITVLWVDDNIVSQVKTIEK
Sbjct: 61  SASSIFEAKPGTMGSNSTRTGVIAVKCGMSALWDKWGARIPITVLWVDDNIVSQVKTIEK 120

Query: 121 EGITALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFV 180
           EGITALQIGCGQKK KHL+KPE+GHFRAQGVPLKRKLREFPV++DALLPVGT IGVRHFV
Sbjct: 121 EGITALQIGCGQKKEKHLSKPELGHFRAQGVPLKRKLREFPVSQDALLPVGTEIGVRHFV 180

Query: 181 PGQFIDVTGITRGKGFQGVMKKHGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKMA 240
           PGQ++DVTGI+RGKGFQGVMK+HGFKGMPASHGASLSHRS GSTGQRDAPGKVFKG+KMA
Sbjct: 181 PGQYVDVTGISRGKGFQGVMKRHGFKGMPASHGASLSHRSGGSTGQRDAPGKVFKGRKMA 240

Query: 241 GRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAFYKKPDKS-ILPFPTY 300
           GRMGGKQRTVKNVW+YKIDPARNLMWV+G +PGAEGNFVFIKDA YKK +KS ILPFPTY
Sbjct: 241 GRMGGKQRTVKNVWIYKIDPARNLMWVKGPIPGAEGNFVFIKDAVYKKLNKSAILPFPTY 300

Query: 301 FANNDEDTETLEPLVADLGEVDPFMVGE 328
           FA + EDT+ LEPLVADLGEVDPFM G+
Sbjct: 301 FATDGEDTDKLEPLVADLGEVDPFMTGD 328

[Close]

BLAST of CmoCh06G015820 vs. NCBI nr
Match: gi|659077038|ref|XP_008438999.1| (PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Cucumis melo])

HSP 1 Score: 549.7 bits (1415), Expect = 3.5e-153
Identity = 272/328 (82.93%), Postives = 301/328 (91.77%), Query Frame = 1


Query: 1   MSALSRGLISRFRLLSINSAASPTITSSSSSSSSWTHPSCYFFFRTFSTEGSIQAGDGSS 60
           MSALSRGLISR RLLSINS AS ++TSSS SSSS T+ SCY+FFR FST+   QA DGS 
Sbjct: 1   MSALSRGLISRLRLLSINSGASHSVTSSSYSSSSRTNASCYYFFRAFSTQDLTQASDGSL 60

Query: 61  LSSPIIEAKPGVMSPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEK 120
            +S IIEAKPG MS NS+RTGVIAVKCGMSALWDKWGAR+PITVLWVDDNIVSQVKTIEK
Sbjct: 61  PASSIIEAKPGTMSSNSRRTGVIAVKCGMSALWDKWGARIPITVLWVDDNIVSQVKTIEK 120

Query: 121 EGITALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFV 180
           EGITALQIGCGQKK KHL+KPE+GHFRAQGVPLKRKL+EFPV++DALLPVGT IG RHFV
Sbjct: 121 EGITALQIGCGQKKEKHLSKPELGHFRAQGVPLKRKLKEFPVSQDALLPVGTEIGARHFV 180

Query: 181 PGQFIDVTGITRGKGFQGVMKKHGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKMA 240
           PGQ++DVTGI+RGKGFQGVMK+HGFKGMPASHGASLSHRS GSTGQRDAPGKVFKG+KMA
Sbjct: 181 PGQYVDVTGISRGKGFQGVMKRHGFKGMPASHGASLSHRSGGSTGQRDAPGKVFKGRKMA 240

Query: 241 GRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAFYKKPDKS-ILPFPTY 300
           GRMGGKQRTVKNVW+YKIDPARNL+WV+G +PGAEG+FVFIKDA YK+ +KS ILPFPTY
Sbjct: 241 GRMGGKQRTVKNVWIYKIDPARNLIWVKGPIPGAEGSFVFIKDAMYKRLNKSAILPFPTY 300

Query: 301 FANNDEDTETLEPLVADLGEVDPFMVGE 328
           FA + EDT+ LEPLVADLGEVDPFM+G+
Sbjct: 301 FATDGEDTDKLEPLVADLGEVDPFMIGD 328

[Close]

BLAST of CmoCh06G015820 vs. NCBI nr
Match: gi|645233773|ref|XP_008223504.1| (PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Prunus mume])

HSP 1 Score: 524.6 bits (1350), Expect = 1.2e-145
Identity = 260/327 (79.51%), Postives = 288/327 (88.07%), Query Frame = 1


Query: 1   MSALSRGLISRFRLLSINSAASPTITSSSSSSSSWTHPSCYFFFRTFSTEGSIQAGDGSS 60
           MSALSRGLISR RLLS+N  A+    +++++S + T    Y FFR FS+E  ++A + + 
Sbjct: 1   MSALSRGLISRLRLLSLNPTAAAAANANATTSFTQTQ---YHFFRWFSSEALVEAAEVAE 60

Query: 61  LSSPIIEAKPGVMSPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEK 120
             S +IEAKPG MSP+SKRTG++AVKCGM+A WDKWGARVPITVLWVDDNIVSQVKT EK
Sbjct: 61  ERSRVIEAKPGAMSPSSKRTGLVAVKCGMTARWDKWGARVPITVLWVDDNIVSQVKTPEK 120

Query: 121 EGITALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFV 180
           EG  ALQIGCGQKKAKHLTK EVGHFRAQGVPLKRKL+EFPVT+DALLPVG +IGVRHFV
Sbjct: 121 EGFPALQIGCGQKKAKHLTKSEVGHFRAQGVPLKRKLKEFPVTKDALLPVGMSIGVRHFV 180

Query: 181 PGQFIDVTGITRGKGFQGVMKKHGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKMA 240
           PGQ++DVTGITRGKGFQG MK+HGFKGMP SHGASLSHRS+GSTGQRDAPGKVFKGKKMA
Sbjct: 181 PGQYVDVTGITRGKGFQGGMKRHGFKGMPESHGASLSHRSIGSTGQRDAPGKVFKGKKMA 240

Query: 241 GRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAFYKKPDKSILPFPTYF 300
           GRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFI+DAFYKKPD S+LPFPTYF
Sbjct: 241 GRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIRDAFYKKPDISLLPFPTYF 300

Query: 301 ANNDEDTETLEPLVADLGEVDPFMVGE 328
           A  DED   LEPLVADLGEVDPFMV +
Sbjct: 301 APEDEDATKLEPLVADLGEVDPFMVAD 324

[Close]

BLAST of CmoCh06G015820 vs. NCBI nr
Match: gi|596145900|ref|XP_007222647.1| (hypothetical protein PRUPE_ppa008555mg [Prunus persica])

HSP 1 Score: 519.6 bits (1337), Expect = 3.9e-144
Identity = 256/327 (78.29%), Postives = 288/327 (88.07%), Query Frame = 1


Query: 1   MSALSRGLISRFRLLSINSAASPTITSSSSSSSSWTHPSCYFFFRTFSTEGSIQAGDGSS 60
           MSALSRGL+SR RLLS+N   + +  ++++++++    + Y FFR F++E  + A + + 
Sbjct: 1   MSALSRGLLSRLRLLSLNPTTTSSAAAANANATTSFTQTQYHFFRWFNSEALVDASEVAE 60

Query: 61  LSSPIIEAKPGVMSPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEK 120
             S +IEAKPG MSP+SKRTG+IAVKCGM+A WDKWGARVPITVLWVDDNIVSQVKT EK
Sbjct: 61  ERSRVIEAKPGAMSPSSKRTGLIAVKCGMTARWDKWGARVPITVLWVDDNIVSQVKTPEK 120

Query: 121 EGITALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFV 180
           EG  ALQIGCGQKKAKHLTK EVGHFRAQGVPLKRKLREFPVT+DALLPVG +IGVRHFV
Sbjct: 121 EGFPALQIGCGQKKAKHLTKSEVGHFRAQGVPLKRKLREFPVTKDALLPVGMSIGVRHFV 180

Query: 181 PGQFIDVTGITRGKGFQGVMKKHGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKMA 240
           PGQ++DVTGITRGKGFQG MK+HGFKGMPASHGASLSHRS+GSTGQRDAPGKVFKG+KMA
Sbjct: 181 PGQYVDVTGITRGKGFQGGMKRHGFKGMPASHGASLSHRSIGSTGQRDAPGKVFKGRKMA 240

Query: 241 GRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAFYKKPDKSILPFPTYF 300
           GRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFI+DAFYKKPD S+LPFPTYF
Sbjct: 241 GRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIRDAFYKKPDISLLPFPTYF 300

Query: 301 ANNDEDTETLEPLVADLGEVDPFMVGE 328
           A  DED   LE LVADLGEVDPFMV +
Sbjct: 301 APEDEDATKLETLVADLGEVDPFMVAD 327

[Close]

BLAST of CmoCh06G015820 vs. NCBI nr
Match: gi|657996245|ref|XP_008390486.1| (PREDICTED: 50S ribosomal protein L3-2, chloroplastic-like [Malus domestica])

HSP 1 Score: 519.2 bits (1336), Expect = 5.1e-144
Identity = 258/328 (78.66%), Postives = 289/328 (88.11%), Query Frame = 1


Query: 1   MSALSRGLISRFRLLSIN-SAASPTITSSSSSSSSWTHPSCYFFFRTFSTEGSIQAGDGS 60
           MSALSRGLISR RLLS+N S++S   T+++++++S+T   C+ FFR FS+E ++ A +  
Sbjct: 1   MSALSRGLISRLRLLSLNPSSSSSPPTAAANATTSFTQTQCH-FFRWFSSEATVDATEAV 60

Query: 61  SLSSPIIEAKPGVMSPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIE 120
           +   P+IEAKPG MSP SKRTG+IAVKCGM+ALWDKWGARVPITVLWVDDNIVSQVKT E
Sbjct: 61  ADRRPVIEAKPGPMSPGSKRTGLIAVKCGMTALWDKWGARVPITVLWVDDNIVSQVKTPE 120

Query: 121 KEGITALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHF 180
           KEG  ALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKL EFPV+ DALLP+G  IGVRHF
Sbjct: 121 KEGFPALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKLHEFPVSNDALLPIGMEIGVRHF 180

Query: 181 VPGQFIDVTGITRGKGFQGVMKKHGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKM 240
           VPGQ++DVTGITRGKGFQG MK+HGF GMPASHGASLSHRS+GSTGQRD  GKVFKG+KM
Sbjct: 181 VPGQYVDVTGITRGKGFQGGMKRHGFSGMPASHGASLSHRSIGSTGQRDDAGKVFKGRKM 240

Query: 241 AGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAFYKKPDKSILPFPTY 300
            GRMGGKQRTVKNVWVYKIDPARNLMWV+GQVPGAEGNFVFI+DAFYKKPD S LPFPTY
Sbjct: 241 PGRMGGKQRTVKNVWVYKIDPARNLMWVKGQVPGAEGNFVFIRDAFYKKPDVSSLPFPTY 300

Query: 301 FANNDEDTETLEPLVADLGEVDPFMVGE 328
           FA+ DED   LEPLVADLGEVDPFMV +
Sbjct: 301 FASEDEDPSKLEPLVADLGEVDPFMVAD 327

The following BLAST results are available for this feature:

BLAST of CmoCh06G015820 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RK3B_ARATH	5.1e-136	74.92	50S ribosomal protein L3-2, chloroplastic OS=Arabidopsis thaliana GN=RPL3B PE=2 ...	[more]
RL3_ZYMMO	1.2e-57	51.32	50S ribosomal protein L3 OS=Zymomonas mobilis subsp. mobilis (strain ATCC 31821 ...	[more]
RL3_NOVAD	4.7e-57	52.43	50S ribosomal protein L3 OS=Novosphingobium aromaticivorans (strain DSM 12444 / ...	[more]
RL3_GLUOX	8.1e-57	52.51	50S ribosomal protein L3 OS=Gluconobacter oxydans (strain 621H) GN=rplC PE=3 SV=...	[more]
RL3_RUEPO	5.8e-55	51.14	50S ribosomal protein L3 OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / ...	[more]

BLAST of CmoCh06G015820 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAV0_CUCSA	3.4e-155	84.45	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171140 PE=3 SV=1	[more]
E5GC40_CUCME	2.5e-153	82.93	50S ribosomal protein l3 OS=Cucumis melo subsp. melo PE=3 SV=1	[more]
M5XEE9_PRUPE	2.7e-144	78.29	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008555mg PE=3 SV=1	[more]
D7T692_VITVI	1.2e-139	77.98	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g00810 PE=3 SV=...	[more]
A0A067K860_JATCU	3.8e-138	77.74	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19089 PE=3 SV=1	[more]

BLAST of CmoCh06G015820 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G17465.1	2.9e-137	74.92	ribosomal protein L3 plastid	[more]
AT2G43030.1	6.8e-38	39.74	Ribosomal protein L3 family protein	[more]

BLAST of CmoCh06G015820 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449459792\|ref\|XP_004147630.1\|	4.9e-155	84.45	PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Cucumis sativus]	[more]
gi\|659077038\|ref\|XP_008438999.1\|	3.5e-153	82.93	PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Cucumis melo]	[more]
gi\|645233773\|ref\|XP_008223504.1\|	1.2e-145	79.51	PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Prunus mume]	[more]
gi\|596145900\|ref\|XP_007222647.1\|	3.9e-144	78.29	hypothetical protein PRUPE_ppa008555mg [Prunus persica]	[more]
gi\|657996245\|ref\|XP_008390486.1\|	5.1e-144	78.66	PREDICTED: 50S ribosomal protein L3-2, chloroplastic-like [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000597	Ribosomal_L3
IPR009000	Transl_B-barrel_sf
IPR019927	Ribosomal_L3_bac/org-type

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G015820.1	CmoCh06G015820.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000597	Ribosomal protein L3	PFAM	PF00297	Ribosomal_L3	coord: 176..260 score: 4.2
IPR009000	Translation protein, beta-barrel domain	unknown	SSF50447	Translation proteins	coord: 73..303 score: 1.06
IPR019927	Ribosomal protein L3, bacterial/organelle-type	HAMAP	MF_01325_B	Ribosomal_L3_B	coord: 79..285 score: 33
IPR019927	Ribosomal protein L3, bacterial/organelle-type	PANTHER	PTHR11229	50S RIBOSOMAL PROTEIN L3	coord: 65..324 score: 7.1E
IPR019927	Ribosomal protein L3, bacterial/organelle-type	TIGRFAMs	TIGR03625	TIGR03625	coord: 81..282 score: 1.3
None	No IPR available	GENE3D	G3DSA:2.40.30.10		coord: 236..286 score: 6.7E-5coord: 81..123 score: 6.
None	No IPR available	GENE3D	G3DSA:4.10.960.10		coord: 154..235 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh06G015820	Cucsa.252160	Cucumber (Gy14) v1	cgycmoB0718
CmoCh06G015820	Cla021829	Watermelon (97103) v1	cmowmB793
CmoCh06G015820	Csa3G171140	Cucumber (Chinese Long) v2	cmocuB806
CmoCh06G015820	MELO3C006752	Melon (DHL92) v3.5.1	cmomeB755
CmoCh06G015820	ClCG05G006870	Watermelon (Charleston Gray)	cmowcgB743
CmoCh06G015820	CSPI03G15360	Wild cucumber (PI 183967)	cmocpiB814
CmoCh06G015820	Cp4.1LG08g05500	Cucurbita pepo (Zucchini)	cmocpeB796
CmoCh06G015820	MELO3C006752.2	Melon (DHL92) v3.6.1	cmomedB857
CmoCh06G015820	CsaV3_3G015540	Cucumber (Chinese Long) v3	cmocucB0953
CmoCh06G015820	Cla97C05G088510	Watermelon (97103) v2	cmowmbB833
CmoCh06G015820	Bhi01G000820	Wax gourd	cmowgoB1005
CmoCh06G015820	CsGy3G015430	Cucumber (Gy14) v2	cgybcmoB401
CmoCh06G015820	Carg25657	Silver-seed gourd	carcmoB1007

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh06G015820	Cucurbita moschata (Rifu)	cmocmoB224
CmoCh06G015820	Cucurbita maxima (Rimu)	cmacmoB271
CmoCh06G015820	Cucurbita maxima (Rimu)	cmacmoB363
CmoCh06G015820	Cucurbita maxima (Rimu)	cmacmoB829
CmoCh06G015820	Watermelon (Charleston Gray)	cmowcgB747
CmoCh06G015820	Cucurbita pepo (Zucchini)	cmocpeB787
CmoCh06G015820	Bottle gourd (USVL1VR-Ls)	cmolsiB759
CmoCh06G015820	Silver-seed gourd	carcmoB0103
CmoCh06G015820	Silver-seed gourd	carcmoB0390