Cp4.1LG08g05500 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG08g05500
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	50S ribosomal protein l3
Location	Cp4.1LG08 : 862572 .. 866322 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAGAACCCTAAACCCCGAGTGGTCACCTTGCTTGCTGCCGCTCTCCCTCCATTACACTGCGTACAGAGAGAGAGAGAATGAAATTCCAGTGTCTCCGAGATCGGAATCTACTCTGAAACTGAGCTAAAGCTTCCCATTTTCTCTCTTGCATCTCCCCATCCAAGCAATCGTTGCGAGTGTTCTTCACCATGTCGGCTTTATCCAGAGGTCTCATTTCTCGTTTTCGTCTTCTGTCGATCAATTCCGCCGCTTCTCCGATAATTACTTCTTCTTCTTCTTCTTCTTCATGGACGCATCCGTCTTGTTATTTCTTCTTCCGTACTTTCAGTACCGAGGGTTCGATTCAGGCCGGTGATGGCTCTTCGCTTTCTTCTCCGATTATTGAAGCTAAACCTGGTGTTATGAGCCCTAACTCGAAGCGTACGGGAGTCATTGCTGTCAAGTGTGGAATGTCGGCGCTGTGGGATAAATGGGGAGCTAGGGTACCCATCACTGTGCTCTGGGTTGATGATAATATTGTATCTCAGGTCAAGACTATTGAGAAAGAAGGCATCACAGCTCTCCAGGTACTGTTTAAATATCTTCTTCTCGTTTTCATTTCTGTCAGCGGAGTAGTTTTTGTTTATTATTCTTGTGAGCACTGCTTAGATGAAATTAGGAAGGGGACATTGTTGGCTCTGGTAGTCTTGGTTTCTGAATGGCATGGGATTTTGGCTTAATGATGCCGAGGAGTACATCTTTGGAATACTATTTGCTATGTTACTCTCTCTGTGAGAGGGATTTGAAGCTGTTACTCTGTTACTCCTACCCTTTCAATTCCATGGATTCTGGAACTATACTGAATTGAGCTGCACACTGTTGTTTTGGATCAGCATTTCACCTATGAAAGATATTCAGTTATCAGAATAGAAGTTGAAGAGGGTATTTATGTACGTTCTGTCTTTCATATGGAAATCAGAGGCCAATGGGCCATTCCCTTTACTCGTACCGATCAGAATCTGACCTCACGAGAAATTGAGCAAAAGGCTGCCGAATTGGCCTATTTCTTGCGTGTACCCATTGAAGTTTTTTGAAAATGAAGTTCAGAAGTAGGAAGAGGTATATAACTGAAATGAAAGAATAATCCTTTTAATAGACAATAGTAATAGTATAACTTAACGGGAGTTTCTTCAGAATGCTCATTTGAGACAAAGCAGACGTATACGGATCAGACAGAAAACTGTCTTGGTCCGAAATTTTGTGGCTTCCATTGTTACACTTAACTAGACGTGATTATATGACCTTTTTGTTCTTAATAACTGGGTTATCGAGGTTCAAATTCTCGTATCAAACTCATTGCCTACCTCCCTAATATTTGGGAAGCAACAAGAGTTTTGATTATTACTTACACTTACCATTGTTGATTTCACCATTTCTAAGGGGAAAAAAAGTTGTCTTGACCGTTAGACCATATGTATGAGATCTCTTTTTTCAGTTCTTACAAATTTTATGGTATAGGACTTGCATTTATTGACCAAGTGTGCTATGCTATGGTGCTAGTTAGATTGGCTGTGGACAGAAGAAGGCGAAGCATTTGACAAAACCCGAGGTAGGTCATTTTAGGGCTCAAGGTGTTCCATTGAAGAGGAAACTGAGGGAGTTTCCAGTGACAGAAGACGCCCTTCTTCCAGTTGGTACGACAATTGGTGTTCGTCATTTTGTCCCTGGACAGTTTGTTGATGTGACAGGAATAACAAGAGGGAAAGGTTTCCAGGTGAGTCCATTGCAGCATTCCTTCATTAAGTTTTTAGCTCACAGCCTCTACTCCTATTAGGTTTCTTTCATTCCCTTGTATTTGTTAATATGGTTAAGTTAATTACATATTCAAAACACATGAATGTTATTGTGGGAACATAAATGGTTAAGTTAATTGCATATTCAGGCAAATATTTTCAATAAACACCGTAACCCAACTCTAATATTTTACCATGATTTACCTAACTCGAACTTGTTTTGTTTGGCTTGAATGCTTAATTATCTAACATTCTGCATGATCTGCGGGGTGAAATTTGAACATCAAAGTCACAGTGCTGTACATGTGTATGTTATCACAAGATAATACGGACAATTTCTCGATGAGATCACGTGCATCCTCAAGATGACAAGAATTAAAACAATCACACAATTCATATATATAAGTATAAACACGAAAAATATTAAGGGCTCTATACAAACCCTAGGAGAAACTTGTGTAGCTGATAACTTATGTTGATCTTTGATCTTTGCTTTGTTTCTGTTTTTCATGTTTTTGCTAATCTGGTTGTATGTTTGTGTTCTAGACATAAAAAAGCTGTTTTCTTTCCATGTGTAAATGGTATAATATCTTTTCCATAAAATGATGTCTCTTATGGCTAATCTTTTTTCTTATTGTTCACAGGGAGTGATGAAAAAGCATGGATTTAAAGGAATGCCAGCATCCCACGGAGCATCATTATCCCACAGAAGCCTCGGTTCTACAGGTCAGAGGGATGCTCCTGGAAAGGTGTGTTTATCTTTTCATGGTGACACTCATTTTTAAGATTGAGTGGTTATTTCAGTTCTCAAATGCATTTTAAGGCTACCCAAAACTCACATCTGGTTGAAACTCGAGCATTGAAGATATCCGCGTAGTAGTAGGGTAATATATCGCGCTAGCCTACTTCGACATAGGACTTTGATTCTGTCTCCTTCGTTTCCTGTCAATGTGCAAGGTTCTTTCTCAATGAATGGAGATTTTAGAGAATAGAAACAAGAATTTGATGGGACTAAACAAAAAGGAATAACTTGCACGGTAAAAGGACGTTTTCTGGATTTATCTATGCTTGTGCAATGAATCAATATCGAGTAATTACTATATTGTAATAGAACAAGCTTGAATTGTTTTTTTAATACCAACTTTATCTGCAGTAGAATTACTATGTTGTAATAGAACACGCTTTGGTTTAGTCTGATTTATTTCTTGAATCGTTTTTATGGTCTGTTATGTTGTGAGTTCTACTCCGTTTTCTCTGTATGCCATGTCGTATACGACTGAGAAACGTGTTCTTATTTTCCAGGTTTTTAAAGGTAAGAAGATGGCTGGTCGTATGGGTGGGAAGCAGAGAACTGTGAAAAATGTGTGGGTCTACAAAATTGATCCTGCAAGAAACTTGATGTGGGTTAGAGGACAAGTAAGTTTCTTTCAATATACACATAAATATGACACTCTTGCGACATTGTGATCTGAGATTATTTGCTGCACAAAACTTCACCTTCCAGGTCCCGGGCGCCGAAGGAAACTTTGTATTTATAAAAGACGCCTTCTACAAGAAACCCAACAAGTCGATCCTTCCATTCCCTACCTACTTTGCGAACGACGACGAGGACACAGAGACGTTGGAACCTCTCGTTGCTGATCTTGGAGAAGTAGATCCATTCATGGTTGGAGAATGATAGGGAGTTGGGCTTTTCAGTGCAAGTTCTTCGATTTCGCTCTGTTTTTTTCGATCTTTTCAGCTACTGATGACCCTTTTTCGAGTAGAAACGCAGCTGGAGGTTCTGTATGAGGCAATCCAATCTCCTTATACGATGGGAATTTACCATTTACTTTTCTTTCAACTCAAAACTTGTACCGGAAAATGCCATTTTGAAATAAAGGATAGAGAAAAAGCTATGATTATTGAGGTTTTTTGTTGATGTTTATGTGAACTTGGAGAAAGAGATTGTTTATGGCTGCCGTCGCCTCTCTTCATTT

mRNA sequence

TAGAACCCTAAACCCCGAGTGGTCACCTTGCTTGCTGCCGCTCTCCCTCCATTACACTGCGTACAGAGAGAGAGAGAATGAAATTCCAGTGTCTCCGAGATCGGAATCTACTCTGAAACTGAGCTAAAGCTTCCCATTTTCTCTCTTGCATCTCCCCATCCAAGCAATCGTTGCGAGTGTTCTTCACCATGTCGGCTTTATCCAGAGGTCTCATTTCTCGTTTTCGTCTTCTGTCGATCAATTCCGCCGCTTCTCCGATAATTACTTCTTCTTCTTCTTCTTCTTCATGGACGCATCCGTCTTGTTATTTCTTCTTCCGTACTTTCAGTACCGAGGGTTCGATTCAGGCCGGTGATGGCTCTTCGCTTTCTTCTCCGATTATTGAAGCTAAACCTGGTGTTATGAGCCCTAACTCGAAGCGTACGGGAGTCATTGCTGTCAAGTGTGGAATGTCGGCGCTGTGGGATAAATGGGGAGCTAGGGTACCCATCACTGTGCTCTGGGTTGATGATAATATTGTATCTCAGGTCAAGACTATTGAGAAAGAAGGCATCACAGCTCTCCAGATTGGCTGTGGACAGAAGAAGGCGAAGCATTTGACAAAACCCGAGGTAGGTCATTTTAGGGCTCAAGGTGTTCCATTGAAGAGGAAACTGAGGGAGTTTCCAGTGACAGAAGACGCCCTTCTTCCAGTTGGTACGACAATTGGTGTTCGTCATTTTGTCCCTGGACAGTTTGTTGATGTGACAGGAATAACAAGAGGGAAAGGTTTCCAGGGAGTGATGAAAAAGCATGGATTTAAAGGAATGCCAGCATCCCACGGAGCATCATTATCCCACAGAAGCCTCGGTTCTACAGGTCAGAGGGATGCTCCTGGAAAGGTTTTTAAAGGTAAGAAGATGGCTGGTCGTATGGGTGGGAAGCAGAGAACTGTGAAAAATGTGTGGGTCTACAAAATTGATCCTGCAAGAAACTTGATGTGGGTTAGAGGACAAGTCCCGGGCGCCGAAGGAAACTTTGTATTTATAAAAGACGCCTTCTACAAGAAACCCAACAAGTCGATCCTTCCATTCCCTACCTACTTTGCGAACGACGACGAGGACACAGAGACGTTGGAACCTCTCGTTGCTGATCTTGGAGAAGTAGATCCATTCATGGTTGGAGAATGATAGGGAGTTGGGCTTTTCAGTGCAAGTTCTTCGATTTCGCTCTGTTTTTTTCGATCTTTTCAGCTACTGATGACCCTTTTTCGAGTAGAAACGCAGCTGGAGGTTCTGTATGAGGCAATCCAATCTCCTTATACGATGGGAATTTACCATTTACTTTTCTTTCAACTCAAAACTTGTACCGGAAAATGCCATTTTGAAATAAAGGATAGAGAAAAAGCTATGATTATTGAGGTTTTTTGTTGATGTTTATGTGAACTTGGAGAAAGAGATTGTTTATGGCTGCCGTCGCCTCTCTTCATTT

Coding sequence (CDS)

ATGTCGGCTTTATCCAGAGGTCTCATTTCTCGTTTTCGTCTTCTGTCGATCAATTCCGCCGCTTCTCCGATAATTACTTCTTCTTCTTCTTCTTCTTCATGGACGCATCCGTCTTGTTATTTCTTCTTCCGTACTTTCAGTACCGAGGGTTCGATTCAGGCCGGTGATGGCTCTTCGCTTTCTTCTCCGATTATTGAAGCTAAACCTGGTGTTATGAGCCCTAACTCGAAGCGTACGGGAGTCATTGCTGTCAAGTGTGGAATGTCGGCGCTGTGGGATAAATGGGGAGCTAGGGTACCCATCACTGTGCTCTGGGTTGATGATAATATTGTATCTCAGGTCAAGACTATTGAGAAAGAAGGCATCACAGCTCTCCAGATTGGCTGTGGACAGAAGAAGGCGAAGCATTTGACAAAACCCGAGGTAGGTCATTTTAGGGCTCAAGGTGTTCCATTGAAGAGGAAACTGAGGGAGTTTCCAGTGACAGAAGACGCCCTTCTTCCAGTTGGTACGACAATTGGTGTTCGTCATTTTGTCCCTGGACAGTTTGTTGATGTGACAGGAATAACAAGAGGGAAAGGTTTCCAGGGAGTGATGAAAAAGCATGGATTTAAAGGAATGCCAGCATCCCACGGAGCATCATTATCCCACAGAAGCCTCGGTTCTACAGGTCAGAGGGATGCTCCTGGAAAGGTTTTTAAAGGTAAGAAGATGGCTGGTCGTATGGGTGGGAAGCAGAGAACTGTGAAAAATGTGTGGGTCTACAAAATTGATCCTGCAAGAAACTTGATGTGGGTTAGAGGACAAGTCCCGGGCGCCGAAGGAAACTTTGTATTTATAAAAGACGCCTTCTACAAGAAACCCAACAAGTCGATCCTTCCATTCCCTACCTACTTTGCGAACGACGACGAGGACACAGAGACGTTGGAACCTCTCGTTGCTGATCTTGGAGAAGTAGATCCATTCATGGTTGGAGAATGA

Protein sequence

MSALSRGLISRFRLLSINSAASPIITSSSSSSSWTHPSCYFFFRTFSTEGSIQAGDGSSLSSPIIEAKPGVMSPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEKEGITALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFVPGQFVDVTGITRGKGFQGVMKKHGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKMAGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAFYKKPNKSILPFPTYFANDDEDTETLEPLVADLGEVDPFMVGE

Homology

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BLAST of Cp4.1LG08g05500 vs. Swiss-Prot
Match: RK3B_ARATH (50S ribosomal protein L3-2, chloroplastic OS=Arabidopsis thaliana GN=RPL3B PE=2 SV=1)

HSP 1 Score: 485.0 bits (1247), Expect = 6.6e-136
Identity = 248/330 (75.15%), Postives = 275/330 (83.33%), Query Frame = 1


Query: 1   MSALSRGLISRF-RLLSINSAASPIITSSSSSSSWTHPSCYFFFRTFSTEGSIQAGDGSS 60
           M+A+ RGL+SR  + LSI S       + SSS S  H S +F  R FS++  +  G GS 
Sbjct: 1   MAAVPRGLLSRINQFLSIRSI------TPSSSESLPHCSSFFLIRRFSSDTGLMDGGGSD 60

Query: 61  L---SSPIIEAKPGVMSPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKT 120
           +    + IIEAK G MS  SKRTG+IAVKCGM+ALWDKWG R+PI++LWVDDNIVSQVKT
Sbjct: 61  IIGAQTRIIEAKQGEMSSRSKRTGIIAVKCGMTALWDKWGKRIPISILWVDDNIVSQVKT 120

Query: 121 IEKEGITALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVR 180
           +EKEGI ALQIGCGQKK KHL+K  VGHFRAQGVPLKRKLREFPVTEDALLPVGT++GVR
Sbjct: 121 VEKEGIFALQIGCGQKKPKHLSKAVVGHFRAQGVPLKRKLREFPVTEDALLPVGTSLGVR 180

Query: 181 HFVPGQFVDVTGITRGKGFQGVMKKHGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGK 240
           HFVPGQ+VDVTGITRGKGFQG MK+HGF GMPASHGASLSHRS GSTGQRDAPGKVFKG+
Sbjct: 181 HFVPGQYVDVTGITRGKGFQGCMKRHGFSGMPASHGASLSHRSGGSTGQRDAPGKVFKGR 240

Query: 241 KMAGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAFYKKPNKSILPFP 300
           KMAGRMG  QRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDA+ KKP+ S LPFP
Sbjct: 241 KMAGRMGADQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAWCKKPDISKLPFP 300

Query: 301 TYFANDDEDTETLEPLVADLGEVDPFMVGE 327
           TY A +DED   LEPLVADLGEVDPFM+ E
Sbjct: 301 TYLAPEDEDPSELEPLVADLGEVDPFMLAE 324

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BLAST of Cp4.1LG08g05500 vs. Swiss-Prot
Match: RL3_ZYMMO (50S ribosomal protein L3 OS=Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) GN=rplC PE=3 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 1.2e-57
Identity = 118/228 (51.75%), Postives = 156/228 (68.42%), Query Frame = 1


Query: 78  RTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEKEGITALQIGCGQKKAKHL 137
           RTGVIA K GM+ L+ + G  VP+TVL ++D  V  VK  +++G  A+Q+G G  KAK++
Sbjct: 2   RTGVIAKKVGMTRLFQEDGRHVPVTVLKLEDVQVVAVKNKDQDGYVAVQLGAGSAKAKNV 61

Query: 138 TKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFVPGQFVDVTGITRGKGFQG 197
           TKP  GHF    V LK KL EFPV+EDA+L VGT+I   HF+ GQ VD++G T+GKGF G
Sbjct: 62  TKPVRGHFAKAEVELKAKLVEFPVSEDAVLEVGTSISADHFIAGQLVDISGQTQGKGFAG 121

Query: 198 VMKKHGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKMAGRMGGKQRTVKNVWVYKI 257
            MK+ GF G+ A+HG SLSHRS GSTG R  PG+VFK KKMAG MG +QRT +N+ V   
Sbjct: 122 AMKRWGFGGLRATHGVSLSHRSHGSTGNRQDPGRVFKNKKMAGHMGARQRTQQNLEVIST 181

Query: 258 DPARNLMWVRGQVPGAEGNFVFIKDAF-YKKPNKSILPFPTYFANDDE 305
           D  R+L++VRG VPG++G ++ I+DA    +P  +  P     AN +E
Sbjct: 182 DAERDLIFVRGSVPGSKGAWLIIRDAVKVARPTDAPYPAAIKAANGNE 229

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BLAST of Cp4.1LG08g05500 vs. Swiss-Prot
Match: RL3_NOVAD (50S ribosomal protein L3 OS=Novosphingobium aromaticivorans (strain DSM 12444 / F199) GN=rplC PE=3 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 2.1e-57
Identity = 112/219 (51.14%), Postives = 154/219 (70.32%), Query Frame = 1


Query: 78  RTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEKEGITALQIGCGQKKAKHL 137
           RTGVIA K GM+ L+ + G  VP+TVL +++  V  V+T E++G  ALQ+G G+ K K++
Sbjct: 2   RTGVIAKKVGMTRLFQEDGRHVPVTVLSLENCQVVSVRTAERDGYVALQLGAGEAKQKNV 61

Query: 138 TKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFVPGQFVDVTGITRGKGFQG 197
            KP+  HF    VPLK ++ EF V +DALL VG+TI   HFVPGQ+VD+TG T+GKGFQG
Sbjct: 62  AKPQREHFAKAEVPLKMEVAEFRVADDALLDVGSTIAASHFVPGQYVDITGQTQGKGFQG 121

Query: 198 VMKKHGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKMAGRMGGKQRTVKNVWVYKI 257
            MK+ GF GM A+HG S+SHR+ GSTG R  PG+VFK KKMAG MG +QRT +N+ V + 
Sbjct: 122 AMKRWGFGGMRATHGVSISHRAHGSTGNRQDPGRVFKNKKMAGHMGDRQRTQQNLEVVRT 181

Query: 258 DPARNLMWVRGQVPGAEGNFVFIKDAFYKKPNKSILPFP 297
           D  R L++V+G VPG++  ++ ++DA  K    +  P+P
Sbjct: 182 DDERGLIFVKGSVPGSKNAWLLVRDA-VKVSRHAEAPYP 219

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BLAST of Cp4.1LG08g05500 vs. Swiss-Prot
Match: RL3_GLUOX (50S ribosomal protein L3 OS=Gluconobacter oxydans (strain 621H) GN=rplC PE=3 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 3.6e-57
Identity = 116/219 (52.97%), Postives = 148/219 (67.58%), Query Frame = 1


Query: 78  RTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEKEGITALQIGCGQKKAKHL 137
           RTG+IA K GM+ L+ + G  VP+TVL +D+  V   +T E++G TA+Q+G G  K K++
Sbjct: 2   RTGLIAKKLGMTRLFKEDGTHVPVTVLHLDNVEVVDARTNERDGYTAIQLGLGNAKVKNV 61

Query: 138 TKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFVPGQFVDVTGITRGKGFQG 197
           TK   GHF    V  KR L EF V+EDALL  GT +   HFV GQ VDVTG ++GKGF G
Sbjct: 62  TKANRGHFARTKVEPKRHLAEFRVSEDALLEAGTKLSAAHFVVGQKVDVTGQSKGKGFAG 121

Query: 198 VMKKHGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKMAGRMGGKQRTVKNVWVYKI 257
           VMK+H F G+ ASHG S+SHRS GSTGQR  PGKVFKGKKMAG MG ++ T  N+ +  +
Sbjct: 122 VMKRHNFAGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAGHMGDERVTTLNLEIAAV 181

Query: 258 DPARNLMWVRGQVPGAEGNFVFIKDAFYKKPNKSILPFP 297
           D  RNL+ VRG +PGA+   V I+DA  KK   +  P+P
Sbjct: 182 DEERNLIMVRGAIPGAKNGLVLIRDAI-KKARHADAPYP 219

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BLAST of Cp4.1LG08g05500 vs. Swiss-Prot
Match: RL3_RUEPO (50S ribosomal protein L3 OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) GN=rplC PE=3 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 7.5e-55
Identity = 113/219 (51.60%), Postives = 149/219 (68.04%), Query Frame = 1


Query: 78  RTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEKEGITALQIGCGQKKAKHL 137
           R+G+IA K GM+ L+ + G ++P+TVL +D+  V   +T EK+G TA+Q+G G  K K +
Sbjct: 2   RSGIIAKKVGMTRLFMEDGKQIPVTVLQLDNLQVVAQRTTEKDGYTAVQLGAGTPKIKRV 61

Query: 138 TKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFVPGQFVDVTGITRGKGFQG 197
           +K   GHF AQ V  KRKL EF V+EDAL+ VG  I   HF+ GQ VDV+G + GKGF G
Sbjct: 62  SKAMRGHFAAQKVEPKRKLAEFRVSEDALIEVGAEISAEHFLTGQKVDVSGTSIGKGFAG 121

Query: 198 VMKKHGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKMAGRMGGKQRTVKNVWVYKI 257
            MK+H F G+ ASHG S+SHRS GSTGQ   PG+VFKGKKMAG MG  + T +N+ V K 
Sbjct: 122 AMKRHNFGGLRASHGVSISHRSHGSTGQCQDPGRVFKGKKMAGHMGAARVTTQNLEVVKT 181

Query: 258 DPARNLMWVRGQVPGAEGNFVFIKDAFYKKPNKSILPFP 297
           D  R L++++G VPG +  +V +KDA  KK  +  LPFP
Sbjct: 182 DAERGLVFIKGAVPGPKSGWVTVKDAVKKKAPEG-LPFP 219

[Close]

BLAST of Cp4.1LG08g05500 vs. TrEMBL
Match: A0A0A0LAV0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171140 PE=3 SV=1)

HSP 1 Score: 555.4 bits (1430), Expect = 4.5e-155
Identity = 280/328 (85.37%), Postives = 299/328 (91.16%), Query Frame = 1


Query: 1   MSALSRGLISRFRLLSINSAAS-PIITSSSSSSSWTHPSCYFFFRTFSTEGSIQAGDGSS 60
           MSALSRGLISRFRLLSINS+AS  I TSSSSSSS T+ SCY+FFR FST+   QA DGS 
Sbjct: 1   MSALSRGLISRFRLLSINSSASHSITTSSSSSSSRTNASCYYFFRAFSTQDLTQASDGSL 60

Query: 61  LSSPIIEAKPGVMSPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEK 120
            +S I EAKPG M  NS RTGVIAVKCGMSALWDKWGAR+PITVLWVDDNIVSQVKTIEK
Sbjct: 61  SASSIFEAKPGTMGSNSTRTGVIAVKCGMSALWDKWGARIPITVLWVDDNIVSQVKTIEK 120

Query: 121 EGITALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFV 180
           EGITALQIGCGQKK KHL+KPE+GHFRAQGVPLKRKLREFPV++DALLPVGT IGVRHFV
Sbjct: 121 EGITALQIGCGQKKEKHLSKPELGHFRAQGVPLKRKLREFPVSQDALLPVGTEIGVRHFV 180

Query: 181 PGQFVDVTGITRGKGFQGVMKKHGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKMA 240
           PGQ+VDVTGI+RGKGFQGVMK+HGFKGMPASHGASLSHRS GSTGQRDAPGKVFKG+KMA
Sbjct: 181 PGQYVDVTGISRGKGFQGVMKRHGFKGMPASHGASLSHRSGGSTGQRDAPGKVFKGRKMA 240

Query: 241 GRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAFYKKPNKS-ILPFPTY 300
           GRMGGKQRTVKNVW+YKIDPARNLMWV+G +PGAEGNFVFIKDA YKK NKS ILPFPTY
Sbjct: 241 GRMGGKQRTVKNVWIYKIDPARNLMWVKGPIPGAEGNFVFIKDAVYKKLNKSAILPFPTY 300

Query: 301 FANDDEDTETLEPLVADLGEVDPFMVGE 327
           FA D EDT+ LEPLVADLGEVDPFM G+
Sbjct: 301 FATDGEDTDKLEPLVADLGEVDPFMTGD 328

[Close]

BLAST of Cp4.1LG08g05500 vs. TrEMBL
Match: E5GC40_CUCME (50S ribosomal protein l3 OS=Cucumis melo subsp. melo PE=3 SV=1)

HSP 1 Score: 549.7 bits (1415), Expect = 2.4e-153
Identity = 275/328 (83.84%), Postives = 300/328 (91.46%), Query Frame = 1


Query: 1   MSALSRGLISRFRLLSINSAASPIITSSS-SSSSWTHPSCYFFFRTFSTEGSIQAGDGSS 60
           MSALSRGLISR RLLSINS AS  +TSSS SSSS T+ SCY+FFR FST+   QA DGS 
Sbjct: 1   MSALSRGLISRLRLLSINSGASHSVTSSSYSSSSRTNASCYYFFRAFSTQDLTQASDGSL 60

Query: 61  LSSPIIEAKPGVMSPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEK 120
            +S IIEAKPG MS NS+RTGVIAVKCGMSALWDKWGAR+PITVLWVDDNIVSQVKTIEK
Sbjct: 61  PASSIIEAKPGTMSSNSRRTGVIAVKCGMSALWDKWGARIPITVLWVDDNIVSQVKTIEK 120

Query: 121 EGITALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFV 180
           EGITALQIGCGQKK KHL+KPE+GHFRAQGVPLKRKL+EFPV++DALLPVGT IG RHFV
Sbjct: 121 EGITALQIGCGQKKEKHLSKPELGHFRAQGVPLKRKLKEFPVSQDALLPVGTEIGARHFV 180

Query: 181 PGQFVDVTGITRGKGFQGVMKKHGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKMA 240
           PGQ+VDVTGI+RGKGFQGVMK+HGFKGMPASHGASLSHRS GSTGQRDAPGKVFKG+KMA
Sbjct: 181 PGQYVDVTGISRGKGFQGVMKRHGFKGMPASHGASLSHRSGGSTGQRDAPGKVFKGRKMA 240

Query: 241 GRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAFYKKPNKS-ILPFPTY 300
           GRMGGKQRTVKNVW+YKIDPARNL+WV+G +PGAEG+FVFIKDA YK+ NKS ILPFPTY
Sbjct: 241 GRMGGKQRTVKNVWIYKIDPARNLIWVKGPIPGAEGSFVFIKDAMYKRLNKSAILPFPTY 300

Query: 301 FANDDEDTETLEPLVADLGEVDPFMVGE 327
           FA D EDT+ LEPLVADLGEVDPFM+G+
Sbjct: 301 FATDGEDTDKLEPLVADLGEVDPFMIGD 328

[Close]

BLAST of Cp4.1LG08g05500 vs. TrEMBL
Match: M5XEE9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008555mg PE=3 SV=1)

HSP 1 Score: 518.5 bits (1334), Expect = 6.0e-144
Identity = 259/328 (78.96%), Postives = 290/328 (88.41%), Query Frame = 1


Query: 1   MSALSRGLISRFRLLSIN--SAASPIITSSSSSSSWTHPSCYFFFRTFSTEGSIQAGDGS 60
           MSALSRGL+SR RLLS+N  + +S    ++++++S+T    Y FFR F++E  + A + +
Sbjct: 1   MSALSRGLLSRLRLLSLNPTTTSSAAAANANATTSFTQTQ-YHFFRWFNSEALVDASEVA 60

Query: 61  SLSSPIIEAKPGVMSPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIE 120
              S +IEAKPG MSP+SKRTG+IAVKCGM+A WDKWGARVPITVLWVDDNIVSQVKT E
Sbjct: 61  EERSRVIEAKPGAMSPSSKRTGLIAVKCGMTARWDKWGARVPITVLWVDDNIVSQVKTPE 120

Query: 121 KEGITALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHF 180
           KEG  ALQIGCGQKKAKHLTK EVGHFRAQGVPLKRKLREFPVT+DALLPVG +IGVRHF
Sbjct: 121 KEGFPALQIGCGQKKAKHLTKSEVGHFRAQGVPLKRKLREFPVTKDALLPVGMSIGVRHF 180

Query: 181 VPGQFVDVTGITRGKGFQGVMKKHGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKM 240
           VPGQ+VDVTGITRGKGFQG MK+HGFKGMPASHGASLSHRS+GSTGQRDAPGKVFKG+KM
Sbjct: 181 VPGQYVDVTGITRGKGFQGGMKRHGFKGMPASHGASLSHRSIGSTGQRDAPGKVFKGRKM 240

Query: 241 AGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAFYKKPNKSILPFPTY 300
           AGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFI+DAFYKKP+ S+LPFPTY
Sbjct: 241 AGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIRDAFYKKPDISLLPFPTY 300

Query: 301 FANDDEDTETLEPLVADLGEVDPFMVGE 327
           FA +DED   LE LVADLGEVDPFMV +
Sbjct: 301 FAPEDEDATKLETLVADLGEVDPFMVAD 327

[Close]

BLAST of Cp4.1LG08g05500 vs. TrEMBL
Match: D7T692_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g00810 PE=3 SV=1)

HSP 1 Score: 505.8 bits (1301), Expect = 4.1e-140
Identity = 256/326 (78.53%), Postives = 271/326 (83.13%), Query Frame = 1


Query: 1   MSALSRGLISRFRLLSINSAASPIITSSSSSSSWTHPSCYFFFRTFSTEGSIQAGDGSSL 60
           MSA SRGLIS FR LSI    S I+ S             + FR F +E  I        
Sbjct: 1   MSAASRGLISGFRFLSIGPRTSAIVAS-------------YQFRRFGSESLIDE------ 60

Query: 61  SSPIIEAKPGVMSPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEKE 120
              II  KPGVMSPNSKRTG IAVKCGMSALWDKWGARVPITVLW+DDNIVSQVKT EKE
Sbjct: 61  EPRIIVPKPGVMSPNSKRTGAIAVKCGMSALWDKWGARVPITVLWLDDNIVSQVKTFEKE 120

Query: 121 GITALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFVP 180
           G+ ALQ+GCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFVP
Sbjct: 121 GLNALQVGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFVP 180

Query: 181 GQFVDVTGITRGKGFQGVMKKHGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKMAG 240
           GQ+VDVTGITRGKGFQG MK+ GFKGMPASHGASLSHRS+GSTGQRDAPGKVFKGKKM G
Sbjct: 181 GQYVDVTGITRGKGFQGGMKRWGFKGMPASHGASLSHRSIGSTGQRDAPGKVFKGKKMPG 240

Query: 241 RMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAFYKKPNKSILPFPTYFA 300
           RMGGKQRTVKNVWVYKIDP RNLMWVRGQVPGAEGNFVFIKDA YKKP+ SILPFPTYF 
Sbjct: 241 RMGGKQRTVKNVWVYKIDPTRNLMWVRGQVPGAEGNFVFIKDAVYKKPDASILPFPTYFP 300

Query: 301 NDDEDTETLEPLVADLGEVDPFMVGE 327
            +DED   LEP+VADLG++DPFMV +
Sbjct: 301 AEDEDPTVLEPIVADLGDIDPFMVAD 307

[Close]

BLAST of Cp4.1LG08g05500 vs. TrEMBL
Match: A0A067K860_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19089 PE=3 SV=1)

HSP 1 Score: 497.7 bits (1280), Expect = 1.1e-137
Identity = 254/327 (77.68%), Postives = 283/327 (86.54%), Query Frame = 1


Query: 1   MSALSRGLISRFR-LLSINSAASPIITSSSSSSSWTHPSCYFFFRTFSTEGSIQAGDGSS 60
           MSA SRGL+SRF  LLS+++      T+S S++S    S Y+F R FST+  +   +  +
Sbjct: 1   MSAQSRGLVSRFHHLLSLSTK-----TTSPSAAS----SLYYFVRRFSTDSLLDGYEIQN 60

Query: 61  LSSPIIEAKPGVMSPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEK 120
             S IIE KPG+M+PNSKRTG+IA+KCGMSALWDKWG R+PITVLWVDDNIV+QVKT+EK
Sbjct: 61  RESRIIEPKPGIMTPNSKRTGLIALKCGMSALWDKWGERIPITVLWVDDNIVTQVKTVEK 120

Query: 121 EGITALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFV 180
           EG  ALQIG GQKKAKHLTKPEVGHFRAQ VPLKRKL+EFPVTEDALLPVGT+IGVRHFV
Sbjct: 121 EGHFALQIGYGQKKAKHLTKPEVGHFRAQDVPLKRKLKEFPVTEDALLPVGTSIGVRHFV 180

Query: 181 PGQFVDVTGITRGKGFQGVMKKHGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKMA 240
           PGQFVDVTGITRGKGFQGVMK+HGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKM 
Sbjct: 181 PGQFVDVTGITRGKGFQGVMKRHGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKMP 240

Query: 241 GRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAFYKKPNKSILPFPTYF 300
           GRMG +QRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDA YKKP+ S+LPFPTYF
Sbjct: 241 GRMGAEQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAVYKKPDVSMLPFPTYF 300

Query: 301 ANDDEDTETLEPLVADLGEVDPFMVGE 327
           A +D   ET EPLVA+LGE+DPFM  +
Sbjct: 301 AAED---ETSEPLVAELGEIDPFMAAD 315

[Close]

BLAST of Cp4.1LG08g05500 vs. TAIR10
Match: AT3G17465.1 (AT3G17465.1 ribosomal protein L3 plastid)

HSP 1 Score: 485.0 bits (1247), Expect = 3.7e-137
Identity = 248/330 (75.15%), Postives = 275/330 (83.33%), Query Frame = 1


Query: 1   MSALSRGLISRF-RLLSINSAASPIITSSSSSSSWTHPSCYFFFRTFSTEGSIQAGDGSS 60
           M+A+ RGL+SR  + LSI S       + SSS S  H S +F  R FS++  +  G GS 
Sbjct: 1   MAAVPRGLLSRINQFLSIRSI------TPSSSESLPHCSSFFLIRRFSSDTGLMDGGGSD 60

Query: 61  L---SSPIIEAKPGVMSPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKT 120
           +    + IIEAK G MS  SKRTG+IAVKCGM+ALWDKWG R+PI++LWVDDNIVSQVKT
Sbjct: 61  IIGAQTRIIEAKQGEMSSRSKRTGIIAVKCGMTALWDKWGKRIPISILWVDDNIVSQVKT 120

Query: 121 IEKEGITALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVR 180
           +EKEGI ALQIGCGQKK KHL+K  VGHFRAQGVPLKRKLREFPVTEDALLPVGT++GVR
Sbjct: 121 VEKEGIFALQIGCGQKKPKHLSKAVVGHFRAQGVPLKRKLREFPVTEDALLPVGTSLGVR 180

Query: 181 HFVPGQFVDVTGITRGKGFQGVMKKHGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGK 240
           HFVPGQ+VDVTGITRGKGFQG MK+HGF GMPASHGASLSHRS GSTGQRDAPGKVFKG+
Sbjct: 181 HFVPGQYVDVTGITRGKGFQGCMKRHGFSGMPASHGASLSHRSGGSTGQRDAPGKVFKGR 240

Query: 241 KMAGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAFYKKPNKSILPFP 300
           KMAGRMG  QRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDA+ KKP+ S LPFP
Sbjct: 241 KMAGRMGADQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAWCKKPDISKLPFP 300

Query: 301 TYFANDDEDTETLEPLVADLGEVDPFMVGE 327
           TY A +DED   LEPLVADLGEVDPFM+ E
Sbjct: 301 TYLAPEDEDPSELEPLVADLGEVDPFMLAE 324

[Close]

BLAST of Cp4.1LG08g05500 vs. TAIR10
Match: AT2G43030.1 (AT2G43030.1 Ribosomal protein L3 family protein)

HSP 1 Score: 155.2 bits (391), Expect = 6.8e-38
Identity = 92/229 (40.17%), Postives = 134/229 (58.52%), Query Frame = 1


Query: 61  SSPIIEAKPG----VMSPNSKRTGVIAVKCGMSALWDKWGARVPITVL-WVDDNIVSQVK 120
           SS +I++ P     V S      GV+  K GM + +++ G  VP+TV+ + + NIV+Q+K
Sbjct: 34  SSLLIKSSPKTRFVVSSSMEAGIGVMGSKLGMMSFFEEDGTVVPVTVVGFREGNIVTQIK 93

Query: 121 TIEKEGITALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTE-DALLPVGTTIG 180
           T+  +G  A+QIG  + + K LTKPE GH +  G    R L+EF +T  +   P    + 
Sbjct: 94  TLATDGYDAVQIGYRRVRDKKLTKPETGHLQKAGTIPMRHLQEFRLTNIEGFEPNQKLVF 153

Query: 181 VRHFVPGQFVDVTGITRGKGFQGVMKKHGFKGMPASHGASLSHRSLGSTGQRDAPGKVFK 240
              F  G  VDV G T GKGFQG +K+H FK    +HG S SHR+LGS G    PG+V+K
Sbjct: 154 DEIFKEGDLVDVAGTTIGKGFQGGIKRHHFKRGQMTHG-SKSHRALGSIGAGTTPGRVYK 213

Query: 241 GKKMAGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDA 284
           GKKM GRMGG +  ++ + + K+D   N++ ++G +PG  GN + I  A
Sbjct: 214 GKKMPGRMGGTRTKIRKLKIVKVDKELNVVMIKGALPGKPGNLLRITPA 261

[Close]

BLAST of Cp4.1LG08g05500 vs. NCBI nr
Match: gi|449459792|ref|XP_004147630.1| (PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Cucumis sativus])

HSP 1 Score: 555.4 bits (1430), Expect = 6.4e-155
Identity = 280/328 (85.37%), Postives = 299/328 (91.16%), Query Frame = 1


Query: 1   MSALSRGLISRFRLLSINSAAS-PIITSSSSSSSWTHPSCYFFFRTFSTEGSIQAGDGSS 60
           MSALSRGLISRFRLLSINS+AS  I TSSSSSSS T+ SCY+FFR FST+   QA DGS 
Sbjct: 1   MSALSRGLISRFRLLSINSSASHSITTSSSSSSSRTNASCYYFFRAFSTQDLTQASDGSL 60

Query: 61  LSSPIIEAKPGVMSPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEK 120
            +S I EAKPG M  NS RTGVIAVKCGMSALWDKWGAR+PITVLWVDDNIVSQVKTIEK
Sbjct: 61  SASSIFEAKPGTMGSNSTRTGVIAVKCGMSALWDKWGARIPITVLWVDDNIVSQVKTIEK 120

Query: 121 EGITALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFV 180
           EGITALQIGCGQKK KHL+KPE+GHFRAQGVPLKRKLREFPV++DALLPVGT IGVRHFV
Sbjct: 121 EGITALQIGCGQKKEKHLSKPELGHFRAQGVPLKRKLREFPVSQDALLPVGTEIGVRHFV 180

Query: 181 PGQFVDVTGITRGKGFQGVMKKHGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKMA 240
           PGQ+VDVTGI+RGKGFQGVMK+HGFKGMPASHGASLSHRS GSTGQRDAPGKVFKG+KMA
Sbjct: 181 PGQYVDVTGISRGKGFQGVMKRHGFKGMPASHGASLSHRSGGSTGQRDAPGKVFKGRKMA 240

Query: 241 GRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAFYKKPNKS-ILPFPTY 300
           GRMGGKQRTVKNVW+YKIDPARNLMWV+G +PGAEGNFVFIKDA YKK NKS ILPFPTY
Sbjct: 241 GRMGGKQRTVKNVWIYKIDPARNLMWVKGPIPGAEGNFVFIKDAVYKKLNKSAILPFPTY 300

Query: 301 FANDDEDTETLEPLVADLGEVDPFMVGE 327
           FA D EDT+ LEPLVADLGEVDPFM G+
Sbjct: 301 FATDGEDTDKLEPLVADLGEVDPFMTGD 328

[Close]

BLAST of Cp4.1LG08g05500 vs. NCBI nr
Match: gi|659077038|ref|XP_008438999.1| (PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Cucumis melo])

HSP 1 Score: 549.7 bits (1415), Expect = 3.5e-153
Identity = 275/328 (83.84%), Postives = 300/328 (91.46%), Query Frame = 1


Query: 1   MSALSRGLISRFRLLSINSAASPIITSSS-SSSSWTHPSCYFFFRTFSTEGSIQAGDGSS 60
           MSALSRGLISR RLLSINS AS  +TSSS SSSS T+ SCY+FFR FST+   QA DGS 
Sbjct: 1   MSALSRGLISRLRLLSINSGASHSVTSSSYSSSSRTNASCYYFFRAFSTQDLTQASDGSL 60

Query: 61  LSSPIIEAKPGVMSPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEK 120
            +S IIEAKPG MS NS+RTGVIAVKCGMSALWDKWGAR+PITVLWVDDNIVSQVKTIEK
Sbjct: 61  PASSIIEAKPGTMSSNSRRTGVIAVKCGMSALWDKWGARIPITVLWVDDNIVSQVKTIEK 120

Query: 121 EGITALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFV 180
           EGITALQIGCGQKK KHL+KPE+GHFRAQGVPLKRKL+EFPV++DALLPVGT IG RHFV
Sbjct: 121 EGITALQIGCGQKKEKHLSKPELGHFRAQGVPLKRKLKEFPVSQDALLPVGTEIGARHFV 180

Query: 181 PGQFVDVTGITRGKGFQGVMKKHGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKMA 240
           PGQ+VDVTGI+RGKGFQGVMK+HGFKGMPASHGASLSHRS GSTGQRDAPGKVFKG+KMA
Sbjct: 181 PGQYVDVTGISRGKGFQGVMKRHGFKGMPASHGASLSHRSGGSTGQRDAPGKVFKGRKMA 240

Query: 241 GRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAFYKKPNKS-ILPFPTY 300
           GRMGGKQRTVKNVW+YKIDPARNL+WV+G +PGAEG+FVFIKDA YK+ NKS ILPFPTY
Sbjct: 241 GRMGGKQRTVKNVWIYKIDPARNLIWVKGPIPGAEGSFVFIKDAMYKRLNKSAILPFPTY 300

Query: 301 FANDDEDTETLEPLVADLGEVDPFMVGE 327
           FA D EDT+ LEPLVADLGEVDPFM+G+
Sbjct: 301 FATDGEDTDKLEPLVADLGEVDPFMIGD 328

[Close]

BLAST of Cp4.1LG08g05500 vs. NCBI nr
Match: gi|645233773|ref|XP_008223504.1| (PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Prunus mume])

HSP 1 Score: 521.9 bits (1343), Expect = 7.8e-145
Identity = 260/326 (79.75%), Postives = 290/326 (88.96%), Query Frame = 1


Query: 1   MSALSRGLISRFRLLSINSAASPIITSSSSSSSWTHPSCYFFFRTFSTEGSIQAGDGSSL 60
           MSALSRGLISR RLLS+N  A+    ++++++S+T    Y FFR FS+E  ++A + +  
Sbjct: 1   MSALSRGLISRLRLLSLNPTAAAA-ANANATTSFTQTQ-YHFFRWFSSEALVEAAEVAEE 60

Query: 61  SSPIIEAKPGVMSPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEKE 120
            S +IEAKPG MSP+SKRTG++AVKCGM+A WDKWGARVPITVLWVDDNIVSQVKT EKE
Sbjct: 61  RSRVIEAKPGAMSPSSKRTGLVAVKCGMTARWDKWGARVPITVLWVDDNIVSQVKTPEKE 120

Query: 121 GITALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFVP 180
           G  ALQIGCGQKKAKHLTK EVGHFRAQGVPLKRKL+EFPVT+DALLPVG +IGVRHFVP
Sbjct: 121 GFPALQIGCGQKKAKHLTKSEVGHFRAQGVPLKRKLKEFPVTKDALLPVGMSIGVRHFVP 180

Query: 181 GQFVDVTGITRGKGFQGVMKKHGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKMAG 240
           GQ+VDVTGITRGKGFQG MK+HGFKGMP SHGASLSHRS+GSTGQRDAPGKVFKGKKMAG
Sbjct: 181 GQYVDVTGITRGKGFQGGMKRHGFKGMPESHGASLSHRSIGSTGQRDAPGKVFKGKKMAG 240

Query: 241 RMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAFYKKPNKSILPFPTYFA 300
           RMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFI+DAFYKKP+ S+LPFPTYFA
Sbjct: 241 RMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIRDAFYKKPDISLLPFPTYFA 300

Query: 301 NDDEDTETLEPLVADLGEVDPFMVGE 327
            +DED   LEPLVADLGEVDPFMV +
Sbjct: 301 PEDEDATKLEPLVADLGEVDPFMVAD 324

[Close]

BLAST of Cp4.1LG08g05500 vs. NCBI nr
Match: gi|657996245|ref|XP_008390486.1| (PREDICTED: 50S ribosomal protein L3-2, chloroplastic-like [Malus domestica])

HSP 1 Score: 520.0 bits (1338), Expect = 3.0e-144
Identity = 258/328 (78.66%), Postives = 289/328 (88.11%), Query Frame = 1


Query: 1   MSALSRGLISRFRLLSIN--SAASPIITSSSSSSSWTHPSCYFFFRTFSTEGSIQAGDGS 60
           MSALSRGLISR RLLS+N  S++SP   ++++++S+T   C+FF R FS+E ++ A +  
Sbjct: 1   MSALSRGLISRLRLLSLNPSSSSSPPTAAANATTSFTQTQCHFF-RWFSSEATVDATEAV 60

Query: 61  SLSSPIIEAKPGVMSPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIE 120
           +   P+IEAKPG MSP SKRTG+IAVKCGM+ALWDKWGARVPITVLWVDDNIVSQVKT E
Sbjct: 61  ADRRPVIEAKPGPMSPGSKRTGLIAVKCGMTALWDKWGARVPITVLWVDDNIVSQVKTPE 120

Query: 121 KEGITALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHF 180
           KEG  ALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKL EFPV+ DALLP+G  IGVRHF
Sbjct: 121 KEGFPALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKLHEFPVSNDALLPIGMEIGVRHF 180

Query: 181 VPGQFVDVTGITRGKGFQGVMKKHGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKM 240
           VPGQ+VDVTGITRGKGFQG MK+HGF GMPASHGASLSHRS+GSTGQRD  GKVFKG+KM
Sbjct: 181 VPGQYVDVTGITRGKGFQGGMKRHGFSGMPASHGASLSHRSIGSTGQRDDAGKVFKGRKM 240

Query: 241 AGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAFYKKPNKSILPFPTY 300
            GRMGGKQRTVKNVWVYKIDPARNLMWV+GQVPGAEGNFVFI+DAFYKKP+ S LPFPTY
Sbjct: 241 PGRMGGKQRTVKNVWVYKIDPARNLMWVKGQVPGAEGNFVFIRDAFYKKPDVSSLPFPTY 300

Query: 301 FANDDEDTETLEPLVADLGEVDPFMVGE 327
           FA++DED   LEPLVADLGEVDPFMV +
Sbjct: 301 FASEDEDPSKLEPLVADLGEVDPFMVAD 327

[Close]

BLAST of Cp4.1LG08g05500 vs. NCBI nr
Match: gi|596145900|ref|XP_007222647.1| (hypothetical protein PRUPE_ppa008555mg [Prunus persica])

HSP 1 Score: 518.5 bits (1334), Expect = 8.7e-144
Identity = 259/328 (78.96%), Postives = 290/328 (88.41%), Query Frame = 1


Query: 1   MSALSRGLISRFRLLSIN--SAASPIITSSSSSSSWTHPSCYFFFRTFSTEGSIQAGDGS 60
           MSALSRGL+SR RLLS+N  + +S    ++++++S+T    Y FFR F++E  + A + +
Sbjct: 1   MSALSRGLLSRLRLLSLNPTTTSSAAAANANATTSFTQTQ-YHFFRWFNSEALVDASEVA 60

Query: 61  SLSSPIIEAKPGVMSPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIE 120
              S +IEAKPG MSP+SKRTG+IAVKCGM+A WDKWGARVPITVLWVDDNIVSQVKT E
Sbjct: 61  EERSRVIEAKPGAMSPSSKRTGLIAVKCGMTARWDKWGARVPITVLWVDDNIVSQVKTPE 120

Query: 121 KEGITALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHF 180
           KEG  ALQIGCGQKKAKHLTK EVGHFRAQGVPLKRKLREFPVT+DALLPVG +IGVRHF
Sbjct: 121 KEGFPALQIGCGQKKAKHLTKSEVGHFRAQGVPLKRKLREFPVTKDALLPVGMSIGVRHF 180

Query: 181 VPGQFVDVTGITRGKGFQGVMKKHGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKM 240
           VPGQ+VDVTGITRGKGFQG MK+HGFKGMPASHGASLSHRS+GSTGQRDAPGKVFKG+KM
Sbjct: 181 VPGQYVDVTGITRGKGFQGGMKRHGFKGMPASHGASLSHRSIGSTGQRDAPGKVFKGRKM 240

Query: 241 AGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAFYKKPNKSILPFPTY 300
           AGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFI+DAFYKKP+ S+LPFPTY
Sbjct: 241 AGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIRDAFYKKPDISLLPFPTY 300

Query: 301 FANDDEDTETLEPLVADLGEVDPFMVGE 327
           FA +DED   LE LVADLGEVDPFMV +
Sbjct: 301 FAPEDEDATKLETLVADLGEVDPFMVAD 327

The following BLAST results are available for this feature:

BLAST of Cp4.1LG08g05500 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RK3B_ARATH	6.6e-136	75.15	50S ribosomal protein L3-2, chloroplastic OS=Arabidopsis thaliana GN=RPL3B PE=2 ...	[more]
RL3_ZYMMO	1.2e-57	51.75	50S ribosomal protein L3 OS=Zymomonas mobilis subsp. mobilis (strain ATCC 31821 ...	[more]
RL3_NOVAD	2.1e-57	51.14	50S ribosomal protein L3 OS=Novosphingobium aromaticivorans (strain DSM 12444 / ...	[more]
RL3_GLUOX	3.6e-57	52.97	50S ribosomal protein L3 OS=Gluconobacter oxydans (strain 621H) GN=rplC PE=3 SV=...	[more]
RL3_RUEPO	7.5e-55	51.60	50S ribosomal protein L3 OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / ...	[more]

BLAST of Cp4.1LG08g05500 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAV0_CUCSA	4.5e-155	85.37	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171140 PE=3 SV=1	[more]
E5GC40_CUCME	2.4e-153	83.84	50S ribosomal protein l3 OS=Cucumis melo subsp. melo PE=3 SV=1	[more]
M5XEE9_PRUPE	6.0e-144	78.96	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008555mg PE=3 SV=1	[more]
D7T692_VITVI	4.1e-140	78.53	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g00810 PE=3 SV=...	[more]
A0A067K860_JATCU	1.1e-137	77.68	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19089 PE=3 SV=1	[more]

BLAST of Cp4.1LG08g05500 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G17465.1	3.7e-137	75.15	ribosomal protein L3 plastid	[more]
AT2G43030.1	6.8e-38	40.17	Ribosomal protein L3 family protein	[more]

BLAST of Cp4.1LG08g05500 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449459792\|ref\|XP_004147630.1\|	6.4e-155	85.37	PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Cucumis sativus]	[more]
gi\|659077038\|ref\|XP_008438999.1\|	3.5e-153	83.84	PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Cucumis melo]	[more]
gi\|645233773\|ref\|XP_008223504.1\|	7.8e-145	79.75	PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Prunus mume]	[more]
gi\|657996245\|ref\|XP_008390486.1\|	3.0e-144	78.66	PREDICTED: 50S ribosomal protein L3-2, chloroplastic-like [Malus domestica]	[more]
gi\|596145900\|ref\|XP_007222647.1\|	8.7e-144	78.96	hypothetical protein PRUPE_ppa008555mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR019927	Ribosomal_L3_bac/org-type
IPR009000	Transl_B-barrel_sf
IPR000597	Ribosomal_L3

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG08g05500.1	Cp4.1LG08g05500.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000597	Ribosomal protein L3	PFAM	PF00297	Ribosomal_L3	coord: 176..259 score: 5.6
IPR009000	Translation protein, beta-barrel domain	unknown	SSF50447	Translation proteins	coord: 72..301 score: 5.12
IPR019927	Ribosomal protein L3, bacterial/organelle-type	HAMAP	MF_01325_B	Ribosomal_L3_B	coord: 78..284 score: 33
IPR019927	Ribosomal protein L3, bacterial/organelle-type	PANTHER	PTHR11229	50S RIBOSOMAL PROTEIN L3	coord: 64..323 score: 1.2E
IPR019927	Ribosomal protein L3, bacterial/organelle-type	TIGRFAMs	TIGR03625	TIGR03625	coord: 80..281 score: 7.0
None	No IPR available	GENE3D	G3DSA:2.40.30.10		coord: 235..286 score: 6.0E-5coord: 80..122 score: 6.
None	No IPR available	GENE3D	G3DSA:4.10.960.10		coord: 153..234 score: 1.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG08g05500	Cucsa.252160	Cucumber (Gy14) v1	cgycpeB0687
Cp4.1LG08g05500	CmaCh06G015870	Cucurbita maxima (Rimu)	cmacpeB853
Cp4.1LG08g05500	CmoCh06G015820	Cucurbita moschata (Rifu)	cmocpeB796
Cp4.1LG08g05500	Cla021829	Watermelon (97103) v1	cpewmB845
Cp4.1LG08g05500	Csa3G171140	Cucumber (Chinese Long) v2	cpecuB859
Cp4.1LG08g05500	MELO3C006752	Melon (DHL92) v3.5.1	cpemeB813
Cp4.1LG08g05500	ClCG05G006870	Watermelon (Charleston Gray)	cpewcgB787
Cp4.1LG08g05500	CSPI03G15360	Wild cucumber (PI 183967)	cpecpiB861
Cp4.1LG08g05500	MELO3C006752.2	Melon (DHL92) v3.6.1	cpemedB951
Cp4.1LG08g05500	CsaV3_3G015540	Cucumber (Chinese Long) v3	cpecucB1056
Cp4.1LG08g05500	Bhi01G000820	Wax gourd	cpewgoB1110
Cp4.1LG08g05500	CsGy3G015430	Cucumber (Gy14) v2	cgybcpeB454
Cp4.1LG08g05500	Carg25657	Silver-seed gourd	carcpeB1043

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG08g05500	Silver-seed gourd	carcpeB0109
Cp4.1LG08g05500	Silver-seed gourd	carcpeB0396
Cp4.1LG08g05500	Wax gourd	cpewgoB1102
Cp4.1LG08g05500	Cucurbita pepo (Zucchini)	cpecpeB194
Cp4.1LG08g05500	Cucurbita pepo (Zucchini)	cpecpeB482
Cp4.1LG08g05500	Cucurbita maxima (Rimu)	cmacpeB292
Cp4.1LG08g05500	Cucurbita maxima (Rimu)	cmacpeB412
Cp4.1LG08g05500	Cucurbita moschata (Rifu)	cmocpeB254
Cp4.1LG08g05500	Cucurbita moschata (Rifu)	cmocpeB373
Cp4.1LG08g05500	Bottle gourd (USVL1VR-Ls)	cpelsiB697
Cp4.1LG08g05500	Bottle gourd (USVL1VR-Ls)	cpelsiB715
Cp4.1LG08g05500	Watermelon (Charleston Gray)	cpewcgB788
Cp4.1LG08g05500	Watermelon (97103) v1	cpewmB853
Cp4.1LG08g05500	Melon (DHL92) v3.5.1	cpemeB793