Carg25657 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg25657
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	50S ribosomal protein l3
Location	Cucurbita_argyrosperma_scaffold_317 : 102890 .. 106585 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGCTTTATCCAGAGGTCTCATTTCTCGTTTTCGTCTTCTGTCGATCAATTCCGCCGCTTCTCCGACAATTACTTCTTCTTCTTCTTCTTCTTCTTCATGGACGCATCCGTCTTGTTATTTCTTCTTCCGTACTTTCAGTACCGAGGGTTCGATTCAGGCTGGCGATGGCTCTTCGCTTACTTCTCCGATTATTGAAGCTAAACCTGGTGTTATGAGCCCTAACTCGAAGCGTACGGGAGTCATTGCTGTCAAGTGTGGAATGTCGGCGCTGTGGGATAAATGGGGAGCTAGGGTACCCATCACTGTGCTCTGGGTTGATGATAATATTGTATCTCAGGTCAAGACTATTGAGAAAGAAGGCATCACAGCTCTCCAGGTACTGTTTAAATATCTTCTTCTCGTTTTCATTTCTGTCAGCGGAGTAGTTTTTGTTTATTATTCTTGTGAGCACTGCTTAGATGAAATTAGGAAGGGGACATTGTTGGCTCTGGTAGTCTTGGTTTCTGAATGGCATGGGATTTTGGCTTAATGATGCCGAGGAGTACATCTTTGGAATACTATTTGCTATGTTACTCTCTCTGTGAGAGGGATTTGAAGCTGTTACTCTGTTACTCCTACCCTTTCAATTCCATGGATTCTGGAACTATACTGAATTGAGCTGCACACTGTTGTTTTGGATCAGCATTTCACCTATGAAAGATATTCAGTTATCATTGAAGAGGGTATTTATGTACGTTCTGTCTTTCATATGGAAATCAGAGGCCAATGGGCCATTCCCTTTACTCGTACCGATCAGAATCTGACCTCACGAGAAATTGAGCAAAAGGCTGCCGAATTGGCCTATTTCTTGCGTGTACCCATTGAAGTTTTTTGAAAATGAAGTTCAGAATGAATGCTTTCTTAGTTCGTAGCAAGAGGTATATAACTGAAATGAAAGAATAATCCTTTTAATAGACAATAGTAATAGTATAACTTAACGGGAGTTTCTTCAGAATGCTCATTTGAGACAAAGCAGACGTATACGGATCAGACAGAAAACTGTCTTGGTCCGAAATTTTGGTGGCTTCCATTGTTACACTTAACTAGACGTGATTATATGACCTTTTTGTTCTTAATAACTGGGTTATCGAGGTTCAAATTCTCGTATCAAACTCATTGCCTACCTCCCTAATATTTGGGAAGCAACAAGAGTTTTGATTATTACTTACACTTACCATTGTTGATTTCACCATTTCTAAGGGGAAAAAAAGTTGTCTTGACCGTTAGACCATATGTATGAGATCTCTTTTTTCAGTTCTTACAAATTTTATGGCATAGGACTTGCATTTATTGACCAAATGTGCTATGCTATGGTGCTAGTTAGATTGGCTGTGGACAGAAGAAGGCGAAGCATTTGACAAAACCCGAGGTAGGTCATTTTAGGGCTCAAGGTGTTCCATTGAAGAGGAAACTGAGGGAGTTTCCAGTGACAGAAGACGCCCTTCTTCCAGTTGGTACGACAATTGGTGTTCGTCATTTTGTCCCTGGACAGTTTATTGATGTGACAGGAATAACAAGAGGGAAAGGTTTCCAGGTGAGTCCATTGCAGCATTCCTTCATTAATTTTTTAGCTCACAGCCTCTACTCCTATTAGGTTTCTTTCATTCCCTTGTATTTGTTAATATGGTTAAGTTAATTACTTCAAAACACATGAATGTTATTGTGGGAACATAAATGGTTAAGTTAATTGCATATTCAAGCAAATATTTTCAATAAACACCGTAACCCAACTCTAATATTTTACCATGATTTACCTAACTCAAACTTGTTTTGTTTGGCTTGAATGCTTAATTATCTAACATTCTGCATGATCTGCGGGGTGAAATTTGAACATCAAAGTCACAGTGCTGTACATGTGTATGTTATCACAAGACAATACGGACAATTTCTCGATGAGATCACGTGCATCCTCAAGATGACAAGAATTAAAACAATCACACAATTCATATATATAAGTATAAACACGAAAAATATTAAGGGCTCTATACAAACCCTAGGAGAAACTTGTATAGCTGATAACTTATGTTGATCTTTGATCTTTGCTTTGTTTCTGTTTTTCATGTTTTTGCTAATCTGGTTGTATGTTTGTGTTCTAGACATAAAAAAGCTGTTTTCTTTCCATGTGTAAATGGTATAATATCTTTTCCATAAAATGATGTCTCTTATGGCTAATCTTTTTTCTTATTGTTCACAGGGAGTGATGAAAAAGCATGGATTTAAAGGAATGCCAGCATCCCACGGAGCATCATTATCCCACAGAAGCCTCGGTTCTACAGGTCAGAGGGATGCTCCTGGAAAGGTGTGTTTATCTTTTCATGGTGACACTCATTTTTAAGATTGAGTGGTTATTTCAGTTCTCAAATGCATTTTAAGGCTACCCAAAACTCACATCTGGTTGAAACTTGAGCATTGAAGATATCCGCGTAGTAGTAGGGTAATATATCGCGCTAGCCTACTTCGACATAGGACTTTGATTCTGTCTCCTTCGTTTCCTGTCAATGTGCAAGGTTCTTTCTCAATGAATGGAGATTTTAGAGAATAGAAACAAGAATTTGATGGGACTAAACAAAAAGGAATAACTTGCACGGTAAAAGGACGTTTTCTGGATTTATCTATGCTTGTGCAATGAATCAATATCGAGTAATTACTATATTGTAATAGAACAAGCTTGAATTGTTTTTTTAATACCAACTTTATCTGCAGTAGAATTACTATGTTGTAATAGAACACGCTTTGGTTTAGTCTGATTTATTTCTTGAATCGTTTTTATGGTCTGTTATGTTGCGAGTTCTACTCCGTTTTCTCTGTATGCCATGTCGTATACGACTGAGAAACGTGTTCTTATTTTCCAGGTTTTTAAAGGTAAGAAGATGGCTGGTCGTATGGGTGGGAAGCAGAGAACTGTGAAAAATGTGTGGGTCTACAAAATTGATCCTGCAAGAAACTTGATGTGGGTTAGAGGACAAGTAAGTTTCTTTCAATATACACATAAATATGACACTCTTGCGACATTGTGATCTGAGATTATTTGCTGCACAAACTTCACCTTCCAGGTCCCGGGCGCCGAAGGAAACTTTGTATTTATAAAAGACGCCTTCTACAAGAAACCCGACAAGTCGATCCTTCCATTCCCTACCTACTTTGCGAACAACGACGAGGACACAGAGACGTTGGAACCTCTCGTTGCTGATCTTGGAGAAGTAGATCCATTCATGGTTGGAGAATGATAGGGAGTTGGGCTTTTCAGTGCAAGTTCTTCGATTTCGCTCTGTTTTTTTTCGATCTTTTCAGCTACTGATGACCCTTTTTCGAGTAGAAACGCAGCTGGAGGTTCTGTATGAGGCAATCCAATCTCCTTATACGATGGGAATTTACCATTTACTTTTCTTTCAACTCAAAACTTGTACCGGAAAATGCCATTTTGAAATAAAGGATAGAGAAAAAGCTATGATTATTGAGGTTTTTTGTTGATGTTTATGTGAACTTGGAGAAAGAGATTGTTTATGGCTGCCGTCGCCTCTCTTCATTTGAACTCATTTTCATCTTCTACTCTCTGAAATTTCAACTATAGATTCTTAAAATTTTGTTGAAATTCCTCAACCCCACCTTAAATTCTGTTAACCAACTTCTGATAACTACCGCACGGTTTGTT

mRNA sequence

ATGTCGGCTTTATCCAGAGGTCTCATTTCTCGTTTTCGTCTTCTGTCGATCAATTCCGCCGCTTCTCCGACAATTACTTCTTCTTCTTCTTCTTCTTCTTCATGGACGCATCCGTCTTGTTATTTCTTCTTCCGTACTTTCAGTACCGAGGGTTCGATTCAGGCTGGCGATGGCTCTTCGCTTACTTCTCCGATTATTGAAGCTAAACCTGGTGTTATGAGCCCTAACTCGAAGCGTACGGGAGTCATTGCTGTCAAGTGTGGAATGTCGGCGCTGTGGGATAAATGGGGAGCTAGGGTACCCATCACTGTGCTCTGGGTTGATGATAATATTGTATCTCAGGTCAAGACTATTGAGAAAGAAGGCATCACAGCTCTCCAGATTGGCTGTGGACAGAAGAAGGCGAAGCATTTGACAAAACCCGAGGTAGGTCATTTTAGGGCTCAAGGTGTTCCATTGAAGAGGAAACTGAGGGAGTTTCCAGTGACAGAAGACGCCCTTCTTCCAGTTGGTACGACAATTGGTGTTCGTCATTTTGTCCCTGGACAGTTTATTGATGTGACAGGAATAACAAGAGGGAAAGGTTTCCAGGGAGTGATGAAAAAGCATGGATTTAAAGGAATGCCAGCATCCCACGGAGCATCATTATCCCACAGAAGCCTCGGTTCTACAGGTCAGAGGGATGCTCCTGGAAAGGTTTTTAAAGGTAAGAAGATGGCTGGTCGTATGGGTGGGAAGCAGAGAACTGTGAAAAATGTGTGGGTCTACAAAATTGATCCTGCAAGAAACTTGATGTGGGTTAGAGGACAAGTCCCGGGCGCCGAAGGAAACTTTGTATTTATAAAAGACGCCTTCTACAAGAAACCCGACAAGTCGATCCTTCCATTCCCTACCTACTTTGCGAACAACGACGAGGACACAGAGACGTTGGAACCTCTCGTTGCTGATCTTGGAGAAGTAGATCCATTCATGGTTGGAGAATGATAGGGAGTTGGGCTTTTCAGTGCAAGTTCTTCGATTTCGCTCTGTTTTTTTTCGATCTTTTCAGCTACTGATGACCCTTTTTCGAGTAGAAACGCAGCTGGAGGTTCTGTATGAGGCAATCCAATCTCCTTATACGATGGGAATTTACCATTTACTTTTCTTTCAACTCAAAACTTGTACCGGAAAATGCCATTTTGAAATAAAGGATAGAGAAAAAGCTATGATTATTGAGGTTTTTTGTTGATGTTTATGTGAACTTGGAGAAAGAGATTGTTTATGGCTGCCGTCGCCTCTCTTCATTTGAACTCATTTTCATCTTCTACTCTCTGAAATTTCAACTATAGATTCTTAAAATTTTGTTGAAATTCCTCAACCCCACCTTAAATTCTGTTAACCAACTTCTGATAACTACCGCACGGTTTGTT

Coding sequence (CDS)

ATGTCGGCTTTATCCAGAGGTCTCATTTCTCGTTTTCGTCTTCTGTCGATCAATTCCGCCGCTTCTCCGACAATTACTTCTTCTTCTTCTTCTTCTTCTTCATGGACGCATCCGTCTTGTTATTTCTTCTTCCGTACTTTCAGTACCGAGGGTTCGATTCAGGCTGGCGATGGCTCTTCGCTTACTTCTCCGATTATTGAAGCTAAACCTGGTGTTATGAGCCCTAACTCGAAGCGTACGGGAGTCATTGCTGTCAAGTGTGGAATGTCGGCGCTGTGGGATAAATGGGGAGCTAGGGTACCCATCACTGTGCTCTGGGTTGATGATAATATTGTATCTCAGGTCAAGACTATTGAGAAAGAAGGCATCACAGCTCTCCAGATTGGCTGTGGACAGAAGAAGGCGAAGCATTTGACAAAACCCGAGGTAGGTCATTTTAGGGCTCAAGGTGTTCCATTGAAGAGGAAACTGAGGGAGTTTCCAGTGACAGAAGACGCCCTTCTTCCAGTTGGTACGACAATTGGTGTTCGTCATTTTGTCCCTGGACAGTTTATTGATGTGACAGGAATAACAAGAGGGAAAGGTTTCCAGGGAGTGATGAAAAAGCATGGATTTAAAGGAATGCCAGCATCCCACGGAGCATCATTATCCCACAGAAGCCTCGGTTCTACAGGTCAGAGGGATGCTCCTGGAAAGGTTTTTAAAGGTAAGAAGATGGCTGGTCGTATGGGTGGGAAGCAGAGAACTGTGAAAAATGTGTGGGTCTACAAAATTGATCCTGCAAGAAACTTGATGTGGGTTAGAGGACAAGTCCCGGGCGCCGAAGGAAACTTTGTATTTATAAAAGACGCCTTCTACAAGAAACCCGACAAGTCGATCCTTCCATTCCCTACCTACTTTGCGAACAACGACGAGGACACAGAGACGTTGGAACCTCTCGTTGCTGATCTTGGAGAAGTAGATCCATTCATGGTTGGAGAATGA

Protein sequence

MSALSRGLISRFRLLSINSAASPTITSSSSSSSSWTHPSCYFFFRTFSTEGSIQAGDGSSLTSPIIEAKPGVMSPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEKEGITALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFVPGQFIDVTGITRGKGFQGVMKKHGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKMAGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAFYKKPDKSILPFPTYFANNDEDTETLEPLVADLGEVDPFMVGE

Homology

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BLAST of Carg25657 vs. NCBI nr
Match: XP_022947107.1 (50S ribosomal protein L3-2, chloroplastic [Cucurbita moschata])

HSP 1 Score: 593.6 bits (1529), Expect = 4.1e-166
Identity = 326/327 (99.69%), Postives = 327/327 (100.00%), Query Frame = 0


Query: 1   MSALSRGLISRFRLLSINSAASPTXXXXXXXXXXXTHPSCYFFFRTFSTEGSIQAGDGSS 60
           MSALSRGLISRFRLLSINSAASPTXXXXXXXXXXXTHPSCYFFFRTFSTEGSIQAGDGSS
Sbjct: 1   MSALSRGLISRFRLLSINSAASPTXXXXXXXXXXXTHPSCYFFFRTFSTEGSIQAGDGSS 60

Query: 61  LTSPIIEAKPGVMSPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEK 120
           L+SPIIEAKPGVMSPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEK
Sbjct: 61  LSSPIIEAKPGVMSPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEK 120

Query: 121 EGITALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFV 180
           EGITALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFV
Sbjct: 121 EGITALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFV 180

Query: 181 PGQFIDVTGITRGKGFQXXXXXXXXXXXXXXXXXXLSHRSLGSTGQRDAPGKVFKGKKMA 240
           PGQFIDVTGITRGKGFQXXXXXXXXXXXXXXXXXXLSHRSLGSTGQRDAPGKVFKGKKMA
Sbjct: 181 PGQFIDVTGITRGKGFQXXXXXXXXXXXXXXXXXXLSHRSLGSTGQRDAPGKVFKGKKMA 240

Query: 241 GRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAFYKKPDKSILPFPTYF 300
           GRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAFYKKPDKSILPFPTYF
Sbjct: 241 GRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAFYKKPDKSILPFPTYF 300

Query: 301 ANNDEDTETLEPLVADLGEVDPFMVGE 328
           ANNDEDTETLEPLVADLGEVDPFMVGE
Sbjct: 301 ANNDEDTETLEPLVADLGEVDPFMVGE 327

[Close]

BLAST of Carg25657 vs. NCBI nr
Match: XP_023540684.1 (50S ribosomal protein L3-2, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 582.8 bits (1501), Expect = 7.3e-163
Identity = 320/327 (97.86%), Postives = 324/327 (99.08%), Query Frame = 0


Query: 1   MSALSRGLISRFRLLSINSAASPTXXXXXXXXXXXTHPSCYFFFRTFSTEGSIQAGDGSS 60
           MSALSRGLISRFRLLSINSAASP  XXXXXXXXX THPSCYFFFRTFSTEGSIQAGDGSS
Sbjct: 1   MSALSRGLISRFRLLSINSAASP-IXXXXXXXXXWTHPSCYFFFRTFSTEGSIQAGDGSS 60

Query: 61  LTSPIIEAKPGVMSPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEK 120
           L+SPIIEAKPGVMSPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEK
Sbjct: 61  LSSPIIEAKPGVMSPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEK 120

Query: 121 EGITALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFV 180
           EGITALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFV
Sbjct: 121 EGITALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFV 180

Query: 181 PGQFIDVTGITRGKGFQXXXXXXXXXXXXXXXXXXLSHRSLGSTGQRDAPGKVFKGKKMA 240
           PGQF+DVTGITRGKGFQXXXXXXXXXXXXXXXXXXLSHRSLGSTGQRDAPGKVFKGKKMA
Sbjct: 181 PGQFVDVTGITRGKGFQXXXXXXXXXXXXXXXXXXLSHRSLGSTGQRDAPGKVFKGKKMA 240

Query: 241 GRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAFYKKPDKSILPFPTYF 300
           GRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAFYKKP+KSILPFPTYF
Sbjct: 241 GRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAFYKKPNKSILPFPTYF 300

Query: 301 ANNDEDTETLEPLVADLGEVDPFMVGE 328
           AN+DEDTETLEPLVADLGEVDPFMVGE
Sbjct: 301 ANDDEDTETLEPLVADLGEVDPFMVGE 326

[Close]

BLAST of Carg25657 vs. NCBI nr
Match: XP_022972230.1 (50S ribosomal protein L3-2, chloroplastic [Cucurbita maxima])

HSP 1 Score: 539.3 bits (1388), Expect = 9.3e-150
Identity = 292/327 (89.30%), Postives = 297/327 (90.83%), Query Frame = 0


Query: 1   MSALSRGLISRFRLLSINSAASPTXXXXXXXXXXXTHPSCYFFFRTFSTEGSIQAGDGSS 60
           MSALSRGLISRFRLLSINS ASPT           THPSCYFFFRTFSTEGSIQAGDGSS
Sbjct: 1   MSALSRGLISRFRLLSINSGASPT-ITSSSSSSSWTHPSCYFFFRTFSTEGSIQAGDGSS 60

Query: 61  LTSPIIEAKPGVMSPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEK 120
           L+SPIIEAK GVMSPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEK
Sbjct: 61  LSSPIIEAKSGVMSPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEK 120

Query: 121 EGITALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFV 180
           EGITALQIGCGQKKAKHLTKPE+GHFRAQGVPLKRKLREFPV+EDALLPVGTTIGVRHFV
Sbjct: 121 EGITALQIGCGQKKAKHLTKPELGHFRAQGVPLKRKLREFPVSEDALLPVGTTIGVRHFV 180

Query: 181 PGQFIDVTGITRGKGFQXXXXXXXXXXXXXXXXXXLSHRSLGSTGQRDAPGKVFKGKKMA 240
           PGQF+DVTGITRGKGFQXXXXXXXXXXXXXXXXXX                 VFKGKKMA
Sbjct: 181 PGQFVDVTGITRGKGFQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVFKGKKMA 240

Query: 241 GRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAFYKKPDKSILPFPTYF 300
           GRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAFYKKPDKSILPFPTYF
Sbjct: 241 GRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAFYKKPDKSILPFPTYF 300

Query: 301 ANNDEDTETLEPLVADLGEVDPFMVGE 328
           AN+DEDTETLEPLVADLGEVDPFMVGE
Sbjct: 301 ANDDEDTETLEPLVADLGEVDPFMVGE 326

[Close]

BLAST of Carg25657 vs. NCBI nr
Match: XP_022138212.1 (50S ribosomal protein L3-2, chloroplastic [Momordica charantia])

HSP 1 Score: 506.1 bits (1302), Expect = 8.7e-140
Identity = 273/327 (83.49%), Postives = 288/327 (88.07%), Query Frame = 0


Query: 1   MSALSRGLISRFRLLSINSAASPTXXXXXXXXXXXTHPSCYFFFRTFSTEGSIQAGDGSS 60
           MSALSRGL+SRFRLLSINS AS T           THPSCY+FFR+FS+E  IQAGD SS
Sbjct: 1   MSALSRGLVSRFRLLSINSGASST----ISPSSSRTHPSCYYFFRSFSSEDLIQAGDVSS 60

Query: 61  LTSPIIEAKPGVMSPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEK 120
            +SPIIEAKPGVM+PNSKRTGVIAVKCGMSALWDKWGAR+PITVLWVDDNIVSQVKTIEK
Sbjct: 61  PSSPIIEAKPGVMAPNSKRTGVIAVKCGMSALWDKWGARIPITVLWVDDNIVSQVKTIEK 120

Query: 121 EGITALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFV 180
           EGITALQIGCGQKKAKHLTKPE+GHFRAQGVPLKRKLREFPV+ DALLPVGTTIGVRHFV
Sbjct: 121 EGITALQIGCGQKKAKHLTKPELGHFRAQGVPLKRKLREFPVSADALLPVGTTIGVRHFV 180

Query: 181 PGQFIDVTGITRGKGFQXXXXXXXXXXXXXXXXXXLSHRSLGSTGQRDAPGKVFKGKKMA 240
           PGQ++DVTGITRGKGFQXXXXXXXXXXXXXXXXXX                 VFKGKKM 
Sbjct: 181 PGQYVDVTGITRGKGFQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVFKGKKMP 240

Query: 241 GRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAFYKKPDKSILPFPTYF 300
           GRMGGKQRTVKNVWVYKIDPARNL+WV+GQVPGAEGNFVFIKDAFYKKPDKSILPFPTYF
Sbjct: 241 GRMGGKQRTVKNVWVYKIDPARNLIWVKGQVPGAEGNFVFIKDAFYKKPDKSILPFPTYF 300

Query: 301 ANNDEDTETLEPLVADLGEVDPFMVGE 328
           A  DED+E LEPLVADLGEVDPFMVG+
Sbjct: 301 ATEDEDSEKLEPLVADLGEVDPFMVGD 323

[Close]

BLAST of Carg25657 vs. NCBI nr
Match: XP_008438999.1 (PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Cucumis melo] >ADN34039.1 50S ribosomal protein l3 [Cucumis melo subsp. melo])

HSP 1 Score: 497.7 bits (1280), Expect = 3.1e-137
Identity = 265/328 (80.79%), Postives = 291/328 (88.72%), Query Frame = 0


Query: 1   MSALSRGLISRFRLLSINSAASPTXXXXXXXXXXXTHPSCYFFFRTFSTEGSIQAGDGSS 60
           MSALSRGLISR RLLSINS AS +           T+ SCY+FFR FST+   QA DGS 
Sbjct: 1   MSALSRGLISRLRLLSINSGASHSVTSSSYSSSSRTNASCYYFFRAFSTQDLTQASDGSL 60

Query: 61  LTSPIIEAKPGVMSPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEK 120
             S IIEAKPG MS NS+RTGVIAVKCGMSALWDKWGAR+PITVLWVDDNIVSQVKTIEK
Sbjct: 61  PASSIIEAKPGTMSSNSRRTGVIAVKCGMSALWDKWGARIPITVLWVDDNIVSQVKTIEK 120

Query: 121 EGITALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFV 180
           EGITALQIGCGQKK KHL+KPE+GHFRAQGVPLKRKL+EFPV++DALLPVGT IG RHFV
Sbjct: 121 EGITALQIGCGQKKEKHLSKPELGHFRAQGVPLKRKLKEFPVSQDALLPVGTEIGARHFV 180

Query: 181 PGQFIDVTGITRGKGFQXXXXXXXXXXXXXXXXXXLSHRSLGSTGQRDAPGKVFKGKKMA 240
           PGQ++DVTGI+RGKGFQXXXXXXXXXXXXXXXXXXLSHRS GSTGQRDAPGKVFKG+KMA
Sbjct: 181 PGQYVDVTGISRGKGFQXXXXXXXXXXXXXXXXXXLSHRSGGSTGQRDAPGKVFKGRKMA 240

Query: 241 GRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAFYKKPDKS-ILPFPTY 300
           GRMGGKQRTVKNVW+YKIDPARNL+WV+G +PGAEG+FVFIKDA YK+ +KS ILPFPTY
Sbjct: 241 GRMGGKQRTVKNVWIYKIDPARNLIWVKGPIPGAEGSFVFIKDAMYKRLNKSAILPFPTY 300

Query: 301 FANNDEDTETLEPLVADLGEVDPFMVGE 328
           FA + EDT+ LEPLVADLGEVDPFM+G+
Sbjct: 301 FATDGEDTDKLEPLVADLGEVDPFMIGD 328

[Close]

BLAST of Carg25657 vs. TAIR10
Match: AT3G17465.1 (ribosomal protein L3 plastid)

HSP 1 Score: 444.9 bits (1143), Expect = 4.3e-125
Identity = 242/331 (73.11%), Postives = 267/331 (80.66%), Query Frame = 0


Query: 1   MSALSRGLISRF-RLLSINSAASPTXXXXXXXXXXXTHPSCYFFFRTFSTEGSIQAGDGS 60
           M+A+ RGL+SR  + LSI S    +            H S +F  R FS++  +  G GS
Sbjct: 1   MAAVPRGLLSRINQFLSIRSITPSS-------SESLPHCSSFFLIRRFSSDTGLMDGGGS 60

Query: 61  SL---TSPIIEAKPGVMSPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVK 120
            +    + IIEAK G MS  SKRTG+IAVKCGM+ALWDKWG R+PI++LWVDDNIVSQVK
Sbjct: 61  DIIGAQTRIIEAKQGEMSSRSKRTGIIAVKCGMTALWDKWGKRIPISILWVDDNIVSQVK 120

Query: 121 TIEKEGITALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGV 180
           T+EKEGI ALQIGCGQKK KHL+K  VGHFRAQGVPLKRKLREFPVTEDALLPVGT++GV
Sbjct: 121 TVEKEGIFALQIGCGQKKPKHLSKAVVGHFRAQGVPLKRKLREFPVTEDALLPVGTSLGV 180

Query: 181 RHFVPGQFIDVTGITRGKGFQXXXXXXXXXXXXXXXXXXLSHRSLGSTGQRDAPGKVFKG 240
           RHFVPGQ++DVTGITRGKGFQ     XXXXXXXXXXXXXLSHRS GSTGQRDAPGKVFKG
Sbjct: 181 RHFVPGQYVDVTGITRGKGFQGCMKRXXXXXXXXXXXXXLSHRSGGSTGQRDAPGKVFKG 240

Query: 241 KKMAGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAFYKKPDKSILPF 300
           +KMAGRMG  QRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDA+ KKPD S LPF
Sbjct: 241 RKMAGRMGADQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAWCKKPDISKLPF 300

Query: 301 PTYFANNDEDTETLEPLVADLGEVDPFMVGE 328
           PTY A  DED   LEPLVADLGEVDPFM+ E
Sbjct: 301 PTYLAPEDEDPSELEPLVADLGEVDPFMLAE 324

[Close]

BLAST of Carg25657 vs. TAIR10
Match: AT2G43030.1 (Ribosomal protein L3 family protein)

HSP 1 Score: 134.8 bits (338), Expect = 9.5e-32
Identity = 77/206 (37.38%), Postives = 114/206 (55.34%), Query Frame = 0


Query: 81  GVIAVKCGMSALWDKWGARVPITVL-WVDDNIVSQVKTIEKEGITALQIGCGQKKAKHLT 140
           GV+  K GM + +++ G  VP+TV+ + + NIV+Q+KT+  +G  A+QIG  + + K LT
Sbjct: 57  GVMGSKLGMMSFFEEDGTVVPVTVVGFREGNIVTQIKTLATDGYDAVQIGYRRVRDKKLT 116

Query: 141 KPEVGHFRAQGVPLKRKLREFPVTE-DALLPVGTTIGVRHFVPGQFIDVTGITRGKGFQX 200
           KPE GH +  G    R L+EF +T  +   P    +    F  G  +DV G T GKGFQ 
Sbjct: 117 KPETGHLQKAGTIPMRHLQEFRLTNIEGFEPNQKLVFDEIFKEGDLVDVAGTTIGKGFQG 176

Query: 201 XXXXXXXXXXXXXXXXXLSHRSLGSTGQRDAPGKVFKGKKMAGRMGGKQRTVKNVWVYKI 260
                             SHR+LGS G    PG+V+KGKKM GRMGG +  ++ + + K+
Sbjct: 177 GIKRHHFKRGQMTHGSK-SHRALGSIGAGTTPGRVYKGKKMPGRMGGTRTKIRKLKIVKV 236

Query: 261 DPARNLMWVRGQVPGAEGNFVFIKDA 285
           D   N++ ++G +PG  GN + I  A
Sbjct: 237 DKELNVVMIKGALPGKPGNLLRITPA 261

[Close]

BLAST of Carg25657 vs. Swiss-Prot
Match: sp|Q9LRN8|RK3B_ARATH (50S ribosomal protein L3-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL3B PE=2 SV=1)

HSP 1 Score: 444.9 bits (1143), Expect = 7.8e-124
Identity = 242/331 (73.11%), Postives = 267/331 (80.66%), Query Frame = 0


Query: 1   MSALSRGLISRF-RLLSINSAASPTXXXXXXXXXXXTHPSCYFFFRTFSTEGSIQAGDGS 60
           M+A+ RGL+SR  + LSI S    +            H S +F  R FS++  +  G GS
Sbjct: 1   MAAVPRGLLSRINQFLSIRSITPSS-------SESLPHCSSFFLIRRFSSDTGLMDGGGS 60

Query: 61  SL---TSPIIEAKPGVMSPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVK 120
            +    + IIEAK G MS  SKRTG+IAVKCGM+ALWDKWG R+PI++LWVDDNIVSQVK
Sbjct: 61  DIIGAQTRIIEAKQGEMSSRSKRTGIIAVKCGMTALWDKWGKRIPISILWVDDNIVSQVK 120

Query: 121 TIEKEGITALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGV 180
           T+EKEGI ALQIGCGQKK KHL+K  VGHFRAQGVPLKRKLREFPVTEDALLPVGT++GV
Sbjct: 121 TVEKEGIFALQIGCGQKKPKHLSKAVVGHFRAQGVPLKRKLREFPVTEDALLPVGTSLGV 180

Query: 181 RHFVPGQFIDVTGITRGKGFQXXXXXXXXXXXXXXXXXXLSHRSLGSTGQRDAPGKVFKG 240
           RHFVPGQ++DVTGITRGKGFQ     XXXXXXXXXXXXXLSHRS GSTGQRDAPGKVFKG
Sbjct: 181 RHFVPGQYVDVTGITRGKGFQGCMKRXXXXXXXXXXXXXLSHRSGGSTGQRDAPGKVFKG 240

Query: 241 KKMAGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAFYKKPDKSILPF 300
           +KMAGRMG  QRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDA+ KKPD S LPF
Sbjct: 241 RKMAGRMGADQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAWCKKPDISKLPF 300

Query: 301 PTYFANNDEDTETLEPLVADLGEVDPFMVGE 328
           PTY A  DED   LEPLVADLGEVDPFM+ E
Sbjct: 301 PTYLAPEDEDPSELEPLVADLGEVDPFMLAE 324

[Close]

BLAST of Carg25657 vs. Swiss-Prot
Match: sp|Q5NQ64|RL3_ZYMMO (50S ribosomal protein L3 OS=Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) OX=264203 GN=rplC PE=3 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 7.4e-50
Identity = 107/228 (46.93%), Postives = 143/228 (62.72%), Query Frame = 0


Query: 79  RTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEKEGITALQIGCGQKKAKHL 138
           RTGVIA K GM+ L+ + G  VP+TVL ++D  V  VK  +++G  A+Q+G G  KAK++
Sbjct: 2   RTGVIAKKVGMTRLFQEDGRHVPVTVLKLEDVQVVAVKNKDQDGYVAVQLGAGSAKAKNV 61

Query: 139 TKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFVPGQFIDVTGITRGKGFQX 198
           TKP  GHF    V LK KL EFPV+EDA+L VGT+I   HF+ GQ +D++G T+GKGF  
Sbjct: 62  TKPVRGHFAKAEVELKAKLVEFPVSEDAVLEVGTSISADHFIAGQLVDISGQTQGKGFAG 121

Query: 199 XXXXXXXXXXXXXXXXXLSHRSLGSTGQRDAPGKVFKGKKMAGRMGGKQRTVKNVWVYKI 258
                            LSHRS GSTG R  PG+VFK KKMAG MG +QRT +N+ V   
Sbjct: 122 AMKRWGFGGLRATHGVSLSHRSHGSTGNRQDPGRVFKNKKMAGHMGARQRTQQNLEVIST 181

Query: 259 DPARNLMWVRGQVPGAEGNFVFIKDAF-YKKPDKSILPFPTYFANNDE 306
           D  R+L++VRG VPG++G ++ I+DA    +P  +  P     AN +E
Sbjct: 182 DAERDLIFVRGSVPGSKGAWLIIRDAVKVARPTDAPYPAAIKAANGNE 229

[Close]

BLAST of Carg25657 vs. Swiss-Prot
Match: sp|Q2G8Y0|RL3_NOVAD (50S ribosomal protein L3 OS=Novosphingobium aromaticivorans (strain ATCC 700278 / DSM 12444 / CIP 105152 / NBRC 16084 / F199) OX=279238 GN=rplC PE=3 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 6.3e-49
Identity = 97/206 (47.09%), Postives = 136/206 (66.02%), Query Frame = 0


Query: 79  RTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEKEGITALQIGCGQKKAKHL 138
           RTGVIA K GM+ L+ + G  VP+TVL +++  V  V+T E++G  ALQ+G G+ K K++
Sbjct: 2   RTGVIAKKVGMTRLFQEDGRHVPVTVLSLENCQVVSVRTAERDGYVALQLGAGEAKQKNV 61

Query: 139 TKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFVPGQFIDVTGITRGKGFQX 198
            KP+  HF    VPLK ++ EF V +DALL VG+TI   HFVPGQ++D+TG T+GKGFQ 
Sbjct: 62  AKPQREHFAKAEVPLKMEVAEFRVADDALLDVGSTIAASHFVPGQYVDITGQTQGKGFQG 121

Query: 199 XXXXXXXXXXXXXXXXXLSHRSLGSTGQRDAPGKVFKGKKMAGRMGGKQRTVKNVWVYKI 258
                            +SHR+ GSTG R  PG+VFK KKMAG MG +QRT +N+ V + 
Sbjct: 122 AMKRWGFGGMRATHGVSISHRAHGSTGNRQDPGRVFKNKKMAGHMGDRQRTQQNLEVVRT 181

Query: 259 DPARNLMWVRGQVPGAEGNFVFIKDA 285
           D  R L++V+G VPG++  ++ ++DA
Sbjct: 182 DDERGLIFVKGSVPGSKNAWLLVRDA 207

[Close]

BLAST of Carg25657 vs. Swiss-Prot
Match: sp|B8IS85|RL3_METNO (50S ribosomal protein L3 OS=Methylobacterium nodulans (strain LMG 21967 / CNCM I-2342 / ORS 2060) OX=460265 GN=rplC PE=3 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 2.0e-47
Identity = 101/218 (46.33%), Postives = 134/218 (61.47%), Query Frame = 0


Query: 79  RTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEKEGITALQIGCGQKKAKHL 138
           R+GVIA K GM+ ++   G  VP+TVL VD   V   +T+EK G  ALQ+G G+ K K++
Sbjct: 2   RSGVIAQKVGMTRVFTDAGEHVPVTVLKVDQCQVVAHRTVEKNGYVALQVGVGKAKVKNV 61

Query: 139 TKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFVPGQFIDVTGITRGKGFQX 198
           +K E G F    V  KRKL EF V+EDAL+PVG  I   HF+PGQF+DVTGIT GKGF  
Sbjct: 62  SKAERGRFAIAKVEPKRKLAEFRVSEDALIPVGAEITADHFIPGQFVDVTGITTGKGFAG 121

Query: 199 XXXXXXXXXXXXXXXXXLSHRSLGSTGQRDAPGKVFKGKKMAGRMGGKQRTVKNVWVYKI 258
                            +SHRS+GSTG R  PGK FK KKM G +G ++ T +N+ V + 
Sbjct: 122 GMKRWNFGGLRASHGVSISHRSIGSTGGRQDPGKTFKNKKMPGHLGVERVTTQNLRVVRT 181

Query: 259 DPARNLMWVRGQVPGAEGNFVFIKDAFYKK-PDKSILP 296
           DP R L+ V G VPG  G ++ ++DA  +K P ++ +P
Sbjct: 182 DPERGLILVEGAVPGVAGGWIHVRDAVKRKLPAEAPMP 219

[Close]

BLAST of Carg25657 vs. Swiss-Prot
Match: sp|B0UHW9|RL3_METS4 (50S ribosomal protein L3 OS=Methylobacterium sp. (strain 4-46) OX=426117 GN=rplC PE=3 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 3.5e-47
Identity = 102/218 (46.79%), Postives = 133/218 (61.01%), Query Frame = 0


Query: 79  RTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEKEGITALQIGCGQKKAKHL 138
           R+GVIA K GM+ ++   G  VP+TVL VD   V   +T+EK G  ALQ+G G+ K K++
Sbjct: 2   RSGVIAQKVGMTRVFTDAGEHVPVTVLKVDQCQVVAHRTVEKNGYVALQVGVGKAKVKNV 61

Query: 139 TKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFVPGQFIDVTGITRGKGFQX 198
           +K E G F    V  KRKL EF VTEDAL+PVG  I   HF+PGQF+DVTG T GKGF  
Sbjct: 62  SKAERGRFAIAKVEPKRKLAEFRVTEDALIPVGAEITADHFIPGQFVDVTGTTTGKGFAG 121

Query: 199 XXXXXXXXXXXXXXXXXLSHRSLGSTGQRDAPGKVFKGKKMAGRMGGKQRTVKNVWVYKI 258
                            +SHRS+GSTG R  PGK FK KKM G +G ++ T +N+ V + 
Sbjct: 122 GMKRWNFGGLRATHGVSISHRSIGSTGGRQDPGKTFKNKKMPGHLGVERVTTQNLRVVRT 181

Query: 259 DPARNLMWVRGQVPGAEGNFVFIKDAFYKK-PDKSILP 296
           DP R L+ V G VPG  G ++ I+DA  +K P ++ +P
Sbjct: 182 DPERGLILVEGAVPGVAGGWIQIRDAVKRKLPAEAPMP 219

[Close]

BLAST of Carg25657 vs. TrEMBL
Match: tr|A0A1S3AYD1|A0A1S3AYD1_CUCME (50S ribosomal protein L3-2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483925 PE=3 SV=1)

HSP 1 Score: 497.7 bits (1280), Expect = 2.0e-137
Identity = 265/328 (80.79%), Postives = 291/328 (88.72%), Query Frame = 0


Query: 1   MSALSRGLISRFRLLSINSAASPTXXXXXXXXXXXTHPSCYFFFRTFSTEGSIQAGDGSS 60
           MSALSRGLISR RLLSINS AS +           T+ SCY+FFR FST+   QA DGS 
Sbjct: 1   MSALSRGLISRLRLLSINSGASHSVTSSSYSSSSRTNASCYYFFRAFSTQDLTQASDGSL 60

Query: 61  LTSPIIEAKPGVMSPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEK 120
             S IIEAKPG MS NS+RTGVIAVKCGMSALWDKWGAR+PITVLWVDDNIVSQVKTIEK
Sbjct: 61  PASSIIEAKPGTMSSNSRRTGVIAVKCGMSALWDKWGARIPITVLWVDDNIVSQVKTIEK 120

Query: 121 EGITALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFV 180
           EGITALQIGCGQKK KHL+KPE+GHFRAQGVPLKRKL+EFPV++DALLPVGT IG RHFV
Sbjct: 121 EGITALQIGCGQKKEKHLSKPELGHFRAQGVPLKRKLKEFPVSQDALLPVGTEIGARHFV 180

Query: 181 PGQFIDVTGITRGKGFQXXXXXXXXXXXXXXXXXXLSHRSLGSTGQRDAPGKVFKGKKMA 240
           PGQ++DVTGI+RGKGFQXXXXXXXXXXXXXXXXXXLSHRS GSTGQRDAPGKVFKG+KMA
Sbjct: 181 PGQYVDVTGISRGKGFQXXXXXXXXXXXXXXXXXXLSHRSGGSTGQRDAPGKVFKGRKMA 240

Query: 241 GRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAFYKKPDKS-ILPFPTY 300
           GRMGGKQRTVKNVW+YKIDPARNL+WV+G +PGAEG+FVFIKDA YK+ +KS ILPFPTY
Sbjct: 241 GRMGGKQRTVKNVWIYKIDPARNLIWVKGPIPGAEGSFVFIKDAMYKRLNKSAILPFPTY 300

Query: 301 FANNDEDTETLEPLVADLGEVDPFMVGE 328
           FA + EDT+ LEPLVADLGEVDPFM+G+
Sbjct: 301 FATDGEDTDKLEPLVADLGEVDPFMIGD 328

[Close]

BLAST of Carg25657 vs. TrEMBL
Match: tr|E5GC40|E5GC40_CUCME (50S ribosomal protein l3 OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 497.7 bits (1280), Expect = 2.0e-137
Identity = 265/328 (80.79%), Postives = 291/328 (88.72%), Query Frame = 0


Query: 1   MSALSRGLISRFRLLSINSAASPTXXXXXXXXXXXTHPSCYFFFRTFSTEGSIQAGDGSS 60
           MSALSRGLISR RLLSINS AS +           T+ SCY+FFR FST+   QA DGS 
Sbjct: 1   MSALSRGLISRLRLLSINSGASHSVTSSSYSSSSRTNASCYYFFRAFSTQDLTQASDGSL 60

Query: 61  LTSPIIEAKPGVMSPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEK 120
             S IIEAKPG MS NS+RTGVIAVKCGMSALWDKWGAR+PITVLWVDDNIVSQVKTIEK
Sbjct: 61  PASSIIEAKPGTMSSNSRRTGVIAVKCGMSALWDKWGARIPITVLWVDDNIVSQVKTIEK 120

Query: 121 EGITALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFV 180
           EGITALQIGCGQKK KHL+KPE+GHFRAQGVPLKRKL+EFPV++DALLPVGT IG RHFV
Sbjct: 121 EGITALQIGCGQKKEKHLSKPELGHFRAQGVPLKRKLKEFPVSQDALLPVGTEIGARHFV 180

Query: 181 PGQFIDVTGITRGKGFQXXXXXXXXXXXXXXXXXXLSHRSLGSTGQRDAPGKVFKGKKMA 240
           PGQ++DVTGI+RGKGFQXXXXXXXXXXXXXXXXXXLSHRS GSTGQRDAPGKVFKG+KMA
Sbjct: 181 PGQYVDVTGISRGKGFQXXXXXXXXXXXXXXXXXXLSHRSGGSTGQRDAPGKVFKGRKMA 240

Query: 241 GRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAFYKKPDKS-ILPFPTY 300
           GRMGGKQRTVKNVW+YKIDPARNL+WV+G +PGAEG+FVFIKDA YK+ +KS ILPFPTY
Sbjct: 241 GRMGGKQRTVKNVWIYKIDPARNLIWVKGPIPGAEGSFVFIKDAMYKRLNKSAILPFPTY 300

Query: 301 FANNDEDTETLEPLVADLGEVDPFMVGE 328
           FA + EDT+ LEPLVADLGEVDPFM+G+
Sbjct: 301 FATDGEDTDKLEPLVADLGEVDPFMIGD 328

[Close]

BLAST of Carg25657 vs. TrEMBL
Match: tr|A0A0A0LAV0|A0A0A0LAV0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171140 PE=3 SV=1)

HSP 1 Score: 479.2 bits (1232), Expect = 7.5e-132
Identity = 272/328 (82.93%), Postives = 290/328 (88.41%), Query Frame = 0


Query: 1   MSALSRGLISRFRLLSINSAASPTXXXXXXXXXXXTHPSCYFFFRTFSTEGSIQAGDGSS 60
           MSALSRGLISRFRLLSINS+    XXXXXXXXXXX         R FST+   QA DGS 
Sbjct: 1   MSALSRGLISRFRLLSINSSXXXXXXXXXXXXXXXXXXXXXXXXRAFSTQDLTQASDGSL 60

Query: 61  LTSPIIEAKPGVMSPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEK 120
             S I EAKPG M  NS RTGVIAVKCGMSALWDKWGAR+PITVLWVDDNIVSQVKTIEK
Sbjct: 61  SASSIFEAKPGTMGSNSTRTGVIAVKCGMSALWDKWGARIPITVLWVDDNIVSQVKTIEK 120

Query: 121 EGITALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFV 180
           EGITALQIGCGQKK KHL+KPE+GHFRAQGVPLKRKLREFPV++DALLPVGT IGVRHFV
Sbjct: 121 EGITALQIGCGQKKEKHLSKPELGHFRAQGVPLKRKLREFPVSQDALLPVGTEIGVRHFV 180

Query: 181 PGQFIDVTGITRGKGFQXXXXXXXXXXXXXXXXXXLSHRSLGSTGQRDAPGKVFKGKKMA 240
           PGQ++DVTGI+RGKGFQXXXXXXXXXXXXXXXXXXLSHRS GSTGQRDAPGKVFKG+KMA
Sbjct: 181 PGQYVDVTGISRGKGFQXXXXXXXXXXXXXXXXXXLSHRSGGSTGQRDAPGKVFKGRKMA 240

Query: 241 GRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAFYKKPDKS-ILPFPTY 300
           GRMGGKQRTVKNVW+YKIDPARNLMWV+G +PGAEGNFVFIKDA YKK +KS ILPFPTY
Sbjct: 241 GRMGGKQRTVKNVWIYKIDPARNLMWVKGPIPGAEGNFVFIKDAVYKKLNKSAILPFPTY 300

Query: 301 FANNDEDTETLEPLVADLGEVDPFMVGE 328
           FA + EDT+ LEPLVADLGEVDPFM G+
Sbjct: 301 FATDGEDTDKLEPLVADLGEVDPFMTGD 328

[Close]

BLAST of Carg25657 vs. TrEMBL
Match: tr|A0A2P6QZP0|A0A2P6QZP0_ROSCH (Putative ribosomal protein L3 OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0427531 PE=3 SV=1)

HSP 1 Score: 478.0 bits (1229), Expect = 1.7e-131
Identity = 244/328 (74.39%), Postives = 265/328 (80.79%), Query Frame = 0


Query: 1   MSALSRGLISRFRLLSINSAASPTXXXXXXXXXXXTHPSCY-FFFRTFSTEGSIQAGDGS 60
           MSALSRGLISR RLLS+N A S +XXX           + Y  FFR FS+E  +   + +
Sbjct: 1   MSALSRGLISRLRLLSLNPATSSSXXXTCTAIPAAHATTSYSHFFRCFSSEALVDGAEIA 60

Query: 61  SLTSPIIEAKPGVMSPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIE 120
              S +IEA+PGVM+P SKRTGVIAVKCGMSA WDKWGARVPITVLWVDDNIVSQVKT E
Sbjct: 61  EDRSRVIEARPGVMTPQSKRTGVIAVKCGMSARWDKWGARVPITVLWVDDNIVSQVKTPE 120

Query: 121 KEGITALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHF 180
           KEGI+ALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVG +IGVRHF
Sbjct: 121 KEGISALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGMSIGVRHF 180

Query: 181 VPGQFIDVTGITRGKGFQXXXXXXXXXXXXXXXXXXLSHRSLGSTGQRDAPGKVFKGKKM 240
           VPGQ++DVTGITRGKGFQ                   SHRS+GSTGQRD  G+VFKG+KM
Sbjct: 181 VPGQYVDVTGITRGKGFQGGMKRYGFRGMPASHGASKSHRSIGSTGQRDDAGRVFKGRKM 240

Query: 241 AGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAFYKKPDKSILPFPTY 300
            GRMGGKQRTVKNVW+YKIDPARNL+WVRGQVPGAEGNFVFIKDAFYKKPD S+LPFPTY
Sbjct: 241 PGRMGGKQRTVKNVWIYKIDPARNLIWVRGQVPGAEGNFVFIKDAFYKKPDVSMLPFPTY 300

Query: 301 FANNDEDTETLEPLVADLGEVDPFMVGE 328
           FA  DED   LEPLVADLGEVDPFM  +
Sbjct: 301 FAPEDEDPSKLEPLVADLGEVDPFMAAD 328

[Close]

BLAST of Carg25657 vs. TrEMBL
Match: tr|A0A1Q3CEI7|A0A1Q3CEI7_CEPFO (Ribosomal_L3 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_21994 PE=3 SV=1)

HSP 1 Score: 474.6 bits (1220), Expect = 1.9e-130
Identity = 258/332 (77.71%), Postives = 278/332 (83.73%), Query Frame = 0


Query: 1   MSALSRGLISRF-RLLSINSAASPTXXXXXXXXXXXTHPSCYFFFRTFSTEGSIQAGDGS 60
           MSALSRGLISR  +LLSIN   SP+             P  +F  R FS +  +   DGS
Sbjct: 1   MSALSRGLISRLHQLLSINPLPSPS-------------PYSFFLLRRFSADTFV---DGS 60

Query: 61  SLTSP----IIEAKPGVMSPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQV 120
            +  P    IIEAK  VM+P SKRTGVIAVKCGMSALWDKWGAR+PITVLWVDDNIVSQV
Sbjct: 61  EIQPPQESRIIEAKASVMTPKSKRTGVIAVKCGMSALWDKWGARIPITVLWVDDNIVSQV 120

Query: 121 KTIEKEGITALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIG 180
           KTIEKEGI ALQ+GCGQKK KHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGT+IG
Sbjct: 121 KTIEKEGIFALQVGCGQKKEKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTSIG 180

Query: 181 VRHFVPGQFIDVTGITRGKGFQXXXXXXXXXXXXXXXXXXLSHRSLGSTGQRDAPGKVFK 240
           VRHFVPGQ++DVTGITRGKGFQ    XXXXXXXXXXXXXXL+HRS+GSTGQRD  GKVFK
Sbjct: 181 VRHFVPGQYVDVTGITRGKGFQGGMKXXXXXXXXXXXXXXLAHRSIGSTGQRDDAGKVFK 240

Query: 241 GKKMAGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAFYKKPDKSILP 300
           GKKM GRMGGKQRTVKNVWVYKIDPARNL+WV+GQVPGAEGNFVFI+DAFYKKPD S+LP
Sbjct: 241 GKKMPGRMGGKQRTVKNVWVYKIDPARNLLWVKGQVPGAEGNFVFIRDAFYKKPDVSLLP 300

Query: 301 FPTYFANNDEDTETLEPLVADLGEVDPFMVGE 328
           FPTY A+ DEDT  LEPLVADLGEVDPFMV +
Sbjct: 301 FPTYLADEDEDTSELEPLVADLGEVDPFMVAD 316

The following BLAST results are available for this feature:

BLAST of Carg25657 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022947107.1	4.1e-166	99.69	50S ribosomal protein L3-2, chloroplastic [Cucurbita moschata]	[more]
XP_023540684.1	7.3e-163	97.86	50S ribosomal protein L3-2, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022972230.1	9.3e-150	89.30	50S ribosomal protein L3-2, chloroplastic [Cucurbita maxima]	[more]
XP_022138212.1	8.7e-140	83.49	50S ribosomal protein L3-2, chloroplastic [Momordica charantia]	[more]
XP_008438999.1	3.1e-137	80.79	PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Cucumis melo] >ADN34039.1 ...	[more]

BLAST of Carg25657 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G17465.1	4.3e-125	73.11	ribosomal protein L3 plastid	[more]
AT2G43030.1	9.5e-32	37.38	Ribosomal protein L3 family protein	[more]

BLAST of Carg25657 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LRN8\|RK3B_ARATH	7.8e-124	73.11	50S ribosomal protein L3-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL...	[more]
sp\|Q5NQ64\|RL3_ZYMMO	7.4e-50	46.93	50S ribosomal protein L3 OS=Zymomonas mobilis subsp. mobilis (strain ATCC 31821 ...	[more]
sp\|Q2G8Y0\|RL3_NOVAD	6.3e-49	47.09	50S ribosomal protein L3 OS=Novosphingobium aromaticivorans (strain ATCC 700278 ...	[more]
sp\|B8IS85\|RL3_METNO	2.0e-47	46.33	50S ribosomal protein L3 OS=Methylobacterium nodulans (strain LMG 21967 / CNCM I...	[more]
sp\|B0UHW9\|RL3_METS4	3.5e-47	46.79	50S ribosomal protein L3 OS=Methylobacterium sp. (strain 4-46) OX=426117 GN=rplC...	[more]

BLAST of Carg25657 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AYD1\|A0A1S3AYD1_CUCME	2.0e-137	80.79	50S ribosomal protein L3-2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC10348392...	[more]
tr\|E5GC40\|E5GC40_CUCME	2.0e-137	80.79	50S ribosomal protein l3 OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1	[more]
tr\|A0A0A0LAV0\|A0A0A0LAV0_CUCSA	7.5e-132	82.93	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171140 PE=3 SV=1	[more]
tr\|A0A2P6QZP0\|A0A2P6QZP0_ROSCH	1.7e-131	74.39	Putative ribosomal protein L3 OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g042753...	[more]
tr\|A0A1Q3CEI7\|A0A1Q3CEI7_CEPFO	1.9e-130	77.71	Ribosomal_L3 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFO...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **INTERPRO**
Term	Definition
IPR009000	Transl_B-barrel_sf
IPR000597	Ribosomal_L3
IPR019927	Ribosomal_L3_bac/org-type

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25657-RA	Carg25657-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019927	Ribosomal protein L3, bacterial/organelle-type	TIGRFAM	TIGR03625	TIGR03625	coord: 81..282 e-value: 1.3E-74 score: 248.4
IPR019927	Ribosomal protein L3, bacterial/organelle-type	PANTHER	PTHR11229	50S RIBOSOMAL PROTEIN L3	coord: 66..307
IPR019927	Ribosomal protein L3, bacterial/organelle-type	HAMAP	MF_01325_B	Ribosomal_L3_B	coord: 79..285 score: 33.628
None	No IPR available	GENE3D	G3DSA:2.40.30.10		coord: 197..288 e-value: 6.0E-22 score: 79.7
None	No IPR available	GENE3D	G3DSA:2.40.50.620		coord: 111..174 e-value: 2.1E-19 score: 71.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 208..241
None	No IPR available	PANTHER	PTHR11229:SF0	39S RIBOSOMAL PROTEIN L3, MITOCHONDRIAL	coord: 66..307
IPR000597	Ribosomal protein L3	PFAM	PF00297	Ribosomal_L3	coord: 176..260 e-value: 4.3E-18 score: 65.3
IPR009000	Translation protein, beta-barrel domain superfamily	SUPERFAMILY	SSF50447	Translation proteins	coord: 73..303

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg25657	Cla021829	Watermelon (97103) v1	carwmB0738
Carg25657	Csa3G171140	Cucumber (Chinese Long) v2	carcuB0757
Carg25657	MELO3C006752	Melon (DHL92) v3.5.1	carmeB0736
Carg25657	ClCG05G006870	Watermelon (Charleston Gray)	carwcgB0718
Carg25657	CSPI03G15360	Wild cucumber (PI 183967)	carcpiB0774
Carg25657	Cucsa.252160	Cucumber (Gy14) v1	carcgyB0833
Carg25657	CmoCh06G015820	Cucurbita moschata (Rifu)	carcmoB1007
Carg25657	Cp4.1LG08g05500	Cucurbita pepo (Zucchini)	carcpeB1043
Carg25657	CsGy3G015430	Cucumber (Gy14) v2	carcgybB0736
Carg25657	MELO3C006752.2	Melon (DHL92) v3.6.1	carmedB0749
Carg25657	CsaV3_3G015540	Cucumber (Chinese Long) v3	carcucB0777
Carg25657	Cla97C05G088510	Watermelon (97103) v2	carwmbB0776
Carg25657	Bhi01G000820	Wax gourd	carwgoB0876

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg25657	Silver-seed gourd	carcarB317
Carg25657	Cucurbita maxima (Rimu)	carcmaB1035
Carg25657	Cucurbita maxima (Rimu)	carcmaB1036
Carg25657	Cucurbita moschata (Rifu)	carcmoB1006
Carg25657	Cucurbita pepo (Zucchini)	carcpeB1042
Carg25657	Bottle gourd (USVL1VR-Ls)	carlsiB678