CsaV3_1G039370 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G039370
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Histone H2A
Location	chr1 : 24820055 .. 24823041 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCGCGAATGTCAAAATACAAGGCCACGTTGGCGATCCGTGTGATGCAACCCTCAACCAATCACATCTCTCTCTCATCCTATATATACCAAAACCCTCACTCCTCACCTTCCAATCTCATTCTCAAACCTTCATCGCTCTCCAAAAACCCCAACTTAGGGTTCCTGATTTTCATCTTTTTCTCTCAAAGTCCCTCGAATTTTCCCGATTCGACGATGAGTTCCACTGGCGGTTCCACCAAAGGCGGTAGAGGAAAGCCCAAAGCTACCAAATCTGTTTCCCGATCGCACAAAGCCGGACTCCAGTTCCCCGTTGGTAGAATCGCAAGGTTTCTCAAGGCTGGTAAATACGCTGAACGTGTCGGCGCTGGTGCTCCGGTCTACTTATCTGCCGTCCTTGAATATCTCGCTGCTGAGGTAACAATCAATGTCCACACTGGTTTTGATTGAATTCTTTTTTGATCATGTTCGATGGATCTTTATTTTTTGTTTTTGTTGATTTCAATTGGGATTAGGTTTTGGAGCTTGCTGGTAATGCTGCTAGAGACAACAAGAAGAATCGTATTGTGCCGAGACATATTCAGCTTGCTGTGAGAAACGATGAGGAATTGAGTAAGCTTTTGGGATCTGTAACAATTGCTAATGGTGGTGTTTTACCTAATATTCACCAGACTCTTTTGCCTAAAAAGGTTGGTAAAGATAAGGGTGATATTGGTTCTGCATCACAAGAATTCTAGAGGTTTTAGGGTTTTTTTTTGGGTAAGGTTTGTTTCATTACTAGAGATGACAATGTTTTGATATGTGAAAATGGATGTGTGGTTTTGCATCTATGACATTCGCTTCCTCTTTTGTACTTTGTCATCTTGATTTTGTTTAGATGCATATATTTTATATCAATATGGGGTTGTTGGTGGATTTGATTCAAGAATGATGATGACCAACTCCTTTTTACAGTTAGAAGTTCAATGAAATGACTTTCTTGTTGAAAGATTTCAATTTTGATTGAAGTTCCACGAAGTTTGTACTTCGAAAGCTTTGTCTCATCTCTCTGATCTCTGTGTATTGAATTTTGTTTGGCAATTGTTATGATTCTAAATACTGTGAATCATGTCTTAGAATATGAATGGTAAATAATGTGTCAATATTGTTCATTATGAATGATAAGACAAAAGGCAATGAGGAATTTATAAGGAAAATATGTTTAATTTCTTCCTCGAGATTTTCCTATTGCCTAATTTCATGAAGTTAAAGGCTGTGCTTTTGTATGAAAGATCAAAACTAGCTTATATTGTTGCAATAGAGGGAAAAATAATACAAATATAGGTCTACCCTAATCAAAACCCTTTTTTTTTGGGTTTATGTTATATTTGTGTGAAATCAACAAATTGTGTTGATTGGGTTTTTTTCTTTTGCTTTCTTTTGATCTCTACTTTTTTGCTCACTTTTAGTCCTCTCTTCGCCGTCGCATTTTCTCAACCTTGCTCTTACTCTGTCTCCTTGGTTCTCTAGGAAGGAAAATTGAGGCTATAGTGTGTGTGTGTATGATAATAATATTAAATCTCAAAAGAAGCATGTAATAGAGGTAAAAAGGATTCTTCCCAAAAAGAAAAAGAAATGAATGGAAACTTTCAAAATCTATGATTTATTTTGTTAAGCCCAAAGAAGTATTGGGCCACTACCACAAGCATATGAGCCCATGATATAGAATATAAGTCATGTTCAAAGATACCACAAAAATAATGTTGTCAATACATTTATATTATATATATGCAAAGTGTATATATTAAAGTGATTTAGAAGCTGATTCATCGGTTGGGTCTTGACCAAACAAAGCTCTTTGACTGATCCATCGAACAGTTGGCTTGGCTAAATCATACTATCAACATCTTATTAAGAATATAAACGAGGTGAATTTTTAAAATATTTCAACTTATGAGTAAATGACAAAAACCAATAACGATAATTGTAATTGCACCTCAATTTTTAATTTCAAATAAAACTCTTAAACTAATACAATTGTTGCACTTTTTGAAACTATGTAAATCTGAGGTTTCAATTTTAATACTTCATAAGTTGGAGGACTCATTATAATTACTACATTACTTTAAAAGTGATTTTTTCCTTTTGGGTTTAAACTTTACTTTTATTAGATGAGAGGGAGAGAGCCAAAACTTGAGGAGAAAGGAGACAAAGAAGATAGTGAAAGGAGGATGGTGAGGTGTAAACCTTTGGTCCATACATAGCAAAAAAACACAAGGGGTGAGGGGAAAAAAAAGAAAAGAAAAAAGAAGAGTATGATTGATGATATTATTATTAGAATTCAAATTTCTTTTGTTTCTAATTTTATAGAAAAAAATAGAAAATAATATTGATGTAAAGAGAATAAAAGTGATAAAGATCCAAAAACTGTTCCTAGTTGTTGACCTAATTGCCAATGCTGCCAAAGCCATCCCAATGGGAGGGATTCCAATAATTATGGCAGCCCCCCCTCCCTCCCCTCAACACTACCCTTCACCATTCTTCTTATTTTCATCTTTGCCCTTTTGGATTTTTGTTCTAAACATTTCAACTCGAGTTGGGCATCCGAAACTGGATGTCTAGACATAACGCCTAAAACTTGAAATCTTGATATTCTTTGTAATTCAAACGCATCACAGTCTGGTAAAGTGGTGGTGAACTTTACTCAACGCGTAGTGGAAGATGTATTTAAATCTTGTCGCTTGAGTTTGAACACCTAAGATATGCAACCAAAATTCTGCAGAGCAAAAACTTGTCAGGAAAGGTTGAGTTGTGGATCATGCTATGTTTAAGATGTTTAACAGTTATGTTTGGAATGTAAACAGTTCTGATAATCCTACGGTGTCCCATAATAAAACAGAGAATAACTTAATCGGAGCTGCATTGAAACCGATTGGAATTCAAAACACTTTTTGATTTTACTTGGAAACAAACTAGAGAGAAAGAAAATGGAGAGAAGTTTTTGAGAAAT

mRNA sequence

ATGTCAAAATACAAGGCCACGTTGGCGATCCGTGTGATGCAACCCTCAACCAATCACATCTCTCTCTCATCCTATATATACCAAAACCCTCACTCCTCACCTTCCAATCTCATTCTCAAACCTTCATCGCTCTCCAAAAACCCCAACTTAGGGTTCCTGATTTTCATCTTTTTCTCTCAAAGTCCCTCGAATTTTCCCGATTCGACGATGAGTTCCACTGGCGGTTCCACCAAAGGCGGTAGAGGAAAGCCCAAAGCTACCAAATCTGTTTCCCGATCGCACAAAGCCGGACTCCAGTTCCCCGTTGGTAGAATCGCAAGGTTTCTCAAGGCTGGTAAATACGCTGAACGTGTCGGCGCTGGTGCTCCGGTCTACTTATCTGCCGTCCTTGAATATCTCGCTGCTGAGGTTTTGGAGCTTGCTGGTAATGCTGCTAGAGACAACAAGAAGAATCGTATTGTGCCGAGACATATTCAGCTTGCTGTGAGAAACGATGAGGAATTGAGTAAGCTTTTGGGATCTGTAACAATTGCTAATGGTGGTGTTTTACCTAATATTCACCAGACTCTTTTGCCTAAAAAGGTTGGTAAAGATAAGGGTGATATTGGTTCTGCATCACAAGAATTCTAG

Coding sequence (CDS)

ATGTCAAAATACAAGGCCACGTTGGCGATCCGTGTGATGCAACCCTCAACCAATCACATCTCTCTCTCATCCTATATATACCAAAACCCTCACTCCTCACCTTCCAATCTCATTCTCAAACCTTCATCGCTCTCCAAAAACCCCAACTTAGGGTTCCTGATTTTCATCTTTTTCTCTCAAAGTCCCTCGAATTTTCCCGATTCGACGATGAGTTCCACTGGCGGTTCCACCAAAGGCGGTAGAGGAAAGCCCAAAGCTACCAAATCTGTTTCCCGATCGCACAAAGCCGGACTCCAGTTCCCCGTTGGTAGAATCGCAAGGTTTCTCAAGGCTGGTAAATACGCTGAACGTGTCGGCGCTGGTGCTCCGGTCTACTTATCTGCCGTCCTTGAATATCTCGCTGCTGAGGTTTTGGAGCTTGCTGGTAATGCTGCTAGAGACAACAAGAAGAATCGTATTGTGCCGAGACATATTCAGCTTGCTGTGAGAAACGATGAGGAATTGAGTAAGCTTTTGGGATCTGTAACAATTGCTAATGGTGGTGTTTTACCTAATATTCACCAGACTCTTTTGCCTAAAAAGGTTGGTAAAGATAAGGGTGATATTGGTTCTGCATCACAAGAATTCTAG

Protein sequence

MSKYKATLAIRVMQPSTNHISLSSYIYQNPHSSPSNLILKPSSLSKNPNLGFLIFIFFSQSPSNFPDSTMSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKDKGDIGSASQEF

Homology

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BLAST of CsaV3_1G039370 vs. NCBI nr
Match: XP_004135645.1 (PREDICTED: histone H2AX [Cucumis sativus] >XP_008450716.1 PREDICTED: histone H2AX [Cucumis melo] >KGN66125.1 Histone H2A [Cucumis sativus])

HSP 1 Score: 270.4 bits (690), Expect = 5.2e-69
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 70  MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 129
           MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV
Sbjct: 1   MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 130 LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 189
           LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 190 LLPKKVGKDKGDIGSASQEF 210
           LLPKKVGKDKGDIGSASQEF
Sbjct: 121 LLPKKVGKDKGDIGSASQEF 140

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BLAST of CsaV3_1G039370 vs. NCBI nr
Match: XP_022154594.1 (probable histone H2AXb [Momordica charantia])

HSP 1 Score: 268.5 bits (685), Expect = 2.0e-68
Identity = 139/140 (99.29%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 70  MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 129
           MSS GGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV
Sbjct: 1   MSSAGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 130 LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 189
           LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 190 LLPKKVGKDKGDIGSASQEF 210
           LLPKKVGKDKGDIGSASQEF
Sbjct: 121 LLPKKVGKDKGDIGSASQEF 140

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BLAST of CsaV3_1G039370 vs. NCBI nr
Match: XP_006433236.1 (histone H2AX [Citrus clementina] >XP_006471940.1 histone H2AX [Citrus sinensis] >ESR46476.1 hypothetical protein CICLE_v10002804mg [Citrus clementina])

HSP 1 Score: 266.2 bits (679), Expect = 9.7e-68
Identity = 138/140 (98.57%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 70  MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 129
           MSSTGGSTKGGRGKPKA+KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV
Sbjct: 1   MSSTGGSTKGGRGKPKASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 130 LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 189
           LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 190 LLPKKVGKDKGDIGSASQEF 210
           LLPKKVGK KGDIGSASQEF
Sbjct: 121 LLPKKVGKGKGDIGSASQEF 140

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BLAST of CsaV3_1G039370 vs. NCBI nr
Match: GAY58772.1 (hypothetical protein CUMW_189470 [Citrus unshiu])

HSP 1 Score: 265.0 bits (676), Expect = 2.2e-67
Identity = 137/140 (97.86%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 70  MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 129
           MSSTGGSTKGGRGKPKA+KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV
Sbjct: 1   MSSTGGSTKGGRGKPKASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 130 LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 189
           LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 190 LLPKKVGKDKGDIGSASQEF 210
           LLPKK+GK KGDIGSASQEF
Sbjct: 121 LLPKKMGKGKGDIGSASQEF 140

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BLAST of CsaV3_1G039370 vs. NCBI nr
Match: RDX68066.1 (Histone H2AX, partial [Mucuna pruriens])

HSP 1 Score: 264.2 bits (674), Expect = 3.7e-67
Identity = 145/180 (80.56%), Postives = 152/180 (84.44%), Query Frame = 0


Query: 41  PSSLSKNPNLGFLIFIFFS-----------QSPSNFPDSTMSSTGGSTKGGRGKPKATKS 100
           P++ S+N    FLI   F            + P+ F D  MSSTGGSTKGGRGKPKA+KS
Sbjct: 23  PANPSENATACFLISHTFRSLAYRIADSRVRVPNLFADQKMSSTGGSTKGGRGKPKASKS 82

Query: 101 VSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNK 160
           VSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNK
Sbjct: 83  VSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNK 142

Query: 161 KNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKDKGDIGSASQEF 210
           KNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK GK KG+IGSASQEF
Sbjct: 143 KNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKAGKGKGEIGSASQEF 202

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BLAST of CsaV3_1G039370 vs. TAIR10
Match: AT1G54690.1 (gamma histone variant H2AX)

HSP 1 Score: 250.8 bits (639), Expect = 7.7e-67
Identity = 134/142 (94.37%), Postives = 135/142 (95.07%), Query Frame = 0


Query: 70  MSSTGGS--TKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLS 129
           MSS  GS  TKGGRGKPKATKSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLS
Sbjct: 1   MSSGAGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLS 60

Query: 130 AVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIH 189
           AVLEYLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIH
Sbjct: 61  AVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIH 120

Query: 190 QTLLPKKVGKDKGDIGSASQEF 210
           QTLLP KVGK+KGDIGSASQEF
Sbjct: 121 QTLLPSKVGKNKGDIGSASQEF 142

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BLAST of CsaV3_1G039370 vs. TAIR10
Match: AT1G08880.1 (Histone superfamily protein)

HSP 1 Score: 249.6 bits (636), Expect = 1.7e-66
Identity = 132/141 (93.62%), Postives = 135/141 (95.74%), Query Frame = 0


Query: 72  STG---GSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSA 131
           STG   G+TKGGRGKPKATKSVSRS KAGLQFPVGRIARFLK+GKYAERVGAGAPVYLSA
Sbjct: 2   STGAGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSA 61

Query: 132 VLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQ 191
           VLEYLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQ
Sbjct: 62  VLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQ 121

Query: 192 TLLPKKVGKDKGDIGSASQEF 210
           TLLP KVGK+KGDIGSASQEF
Sbjct: 122 TLLPSKVGKNKGDIGSASQEF 142

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BLAST of CsaV3_1G039370 vs. TAIR10
Match: AT4G27230.1 (histone H2A 2)

HSP 1 Score: 198.7 bits (504), Expect = 3.5e-51
Identity = 106/124 (85.48%), Postives = 108/124 (87.10%), Query Frame = 0


Query: 80  GRGKP----KATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 139
           GRGK      A KS SRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVLEYLAA
Sbjct: 3   GRGKQLGSGAAKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAA 62

Query: 140 EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKV 199
           EVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGV+PNIH  LLPKK 
Sbjct: 63  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKA 122

[Close]

BLAST of CsaV3_1G039370 vs. TAIR10
Match: AT5G54640.1 (Histone superfamily protein)

HSP 1 Score: 197.2 bits (500), Expect = 1.0e-50
Identity = 106/125 (84.80%), Postives = 108/125 (86.40%), Query Frame = 0


Query: 75  GSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLA 134
           G T G  G  KAT   SRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVLEYLA
Sbjct: 5   GKTLGSGGAKKAT---SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLA 64

Query: 135 AEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 194
           AEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGV+PNIH  LLPKK
Sbjct: 65  AEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKK 124

Query: 195 VGKDK 200
            G  K
Sbjct: 125 AGASK 126

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BLAST of CsaV3_1G039370 vs. TAIR10
Match: AT1G51060.1 (histone H2A 10)

HSP 1 Score: 194.5 bits (493), Expect = 6.5e-50
Identity = 103/124 (83.06%), Postives = 107/124 (86.29%), Query Frame = 0


Query: 80  GRGKP----KATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 139
           GRGK      A K+ +RS KAGLQFPVGRIARFLK GKYAERVGAGAPVYL+AVLEYLAA
Sbjct: 3   GRGKTLGSGSAKKATTRSSKAGLQFPVGRIARFLKKGKYAERVGAGAPVYLAAVLEYLAA 62

Query: 140 EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKV 199
           EVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGV+PNIH  LLPKK 
Sbjct: 63  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT 122

[Close]

BLAST of CsaV3_1G039370 vs. Swiss-Prot
Match: sp|Q9S9K7|H2AXB_ARATH (Probable histone H2AXb OS=Arabidopsis thaliana OX=3702 GN=At1g54690 PE=1 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 1.4e-65
Identity = 134/142 (94.37%), Postives = 135/142 (95.07%), Query Frame = 0


Query: 70  MSSTGGS--TKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLS 129
           MSS  GS  TKGGRGKPKATKSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLS
Sbjct: 1   MSSGAGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLS 60

Query: 130 AVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIH 189
           AVLEYLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIH
Sbjct: 61  AVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIH 120

Query: 190 QTLLPKKVGKDKGDIGSASQEF 210
           QTLLP KVGK+KGDIGSASQEF
Sbjct: 121 QTLLPSKVGKNKGDIGSASQEF 142

[Close]

BLAST of CsaV3_1G039370 vs. Swiss-Prot
Match: sp|O04848|H2AXA_ARATH (Probable histone H2AXa OS=Arabidopsis thaliana OX=3702 GN=At1g08880 PE=1 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 3.1e-65
Identity = 132/141 (93.62%), Postives = 135/141 (95.74%), Query Frame = 0


Query: 72  STG---GSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSA 131
           STG   G+TKGGRGKPKATKSVSRS KAGLQFPVGRIARFLK+GKYAERVGAGAPVYLSA
Sbjct: 2   STGAGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSA 61

Query: 132 VLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQ 191
           VLEYLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQ
Sbjct: 62  VLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQ 121

Query: 192 TLLPKKVGKDKGDIGSASQEF 210
           TLLP KVGK+KGDIGSASQEF
Sbjct: 122 TLLPSKVGKNKGDIGSASQEF 142

[Close]

BLAST of CsaV3_1G039370 vs. Swiss-Prot
Match: sp|O65759|H2AX_CICAR (Histone H2AX OS=Cicer arietinum OX=3827 GN=HIS2A PE=2 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 4.0e-65
Identity = 132/140 (94.29%), Postives = 135/140 (96.43%), Query Frame = 0


Query: 70  MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 129
           MSST  +TKGGRGKPKA+KSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV
Sbjct: 1   MSST-ATTKGGRGKPKASKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 130 LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 189
           LEYLAAEVLELAGNAARDNK NRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT
Sbjct: 61  LEYLAAEVLELAGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 190 LLPKKVGKDKGDIGSASQEF 210
           LLPKKVGK KG+IGSASQEF
Sbjct: 121 LLPKKVGKGKGEIGSASQEF 139

[Close]

BLAST of CsaV3_1G039370 vs. Swiss-Prot
Match: sp|P35063|H2AX_PICAB (Histone H2AX OS=Picea abies OX=3329 PE=2 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 2.2e-63
Identity = 128/140 (91.43%), Postives = 133/140 (95.00%), Query Frame = 0


Query: 70  MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 129
           MSS+G   KGGRGK K+TKSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AV
Sbjct: 1   MSSSG--AKGGRGKAKSTKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAV 60

Query: 130 LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 189
           LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG+VTIANGGVLPNIHQ 
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGAVTIANGGVLPNIHQV 120

Query: 190 LLPKKVGKDKGDIGSASQEF 210
           LLPKK GKDKG+IGSASQEF
Sbjct: 121 LLPKKSGKDKGEIGSASQEF 138

[Close]

BLAST of CsaV3_1G039370 vs. Swiss-Prot
Match: sp|A2XLI0|H2AXA_ORYSI (Probable histone H2AXa OS=Oryza sativa subsp. indica OX=39946 GN=OsI_012923 PE=3 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 3.1e-57
Identity = 122/140 (87.14%), Postives = 127/140 (90.71%), Query Frame = 0


Query: 70  MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 129
           MSS+ G   GGRGK K TK+VSRS KAGLQFPVGRIAR+LKAGKYAERVGAGAPVYLSAV
Sbjct: 1   MSSSQGG--GGRGKAKTTKAVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAV 60

Query: 130 LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 189
           LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELS+LLG+VTIA GGVLPNI Q 
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGTVTIAAGGVLPNIQQV 120

Query: 190 LLPKKVGKDKGDIGSASQEF 210
           LLPKK G  KGDIGSASQEF
Sbjct: 121 LLPKK-GGGKGDIGSASQEF 137

[Close]

BLAST of CsaV3_1G039370 vs. TrEMBL
Match: tr|A0A1S3BQI1|A0A1S3BQI1_CUCME (Histone H2A OS=Cucumis melo OX=3656 GN=LOC103492212 PE=3 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 3.4e-69
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 70  MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 129
           MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV
Sbjct: 1   MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 130 LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 189
           LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 190 LLPKKVGKDKGDIGSASQEF 210
           LLPKKVGKDKGDIGSASQEF
Sbjct: 121 LLPKKVGKDKGDIGSASQEF 140

[Close]

BLAST of CsaV3_1G039370 vs. TrEMBL
Match: tr|A0A0A0LW51|A0A0A0LW51_CUCSA (Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_1G572950 PE=3 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 3.4e-69
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 70  MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 129
           MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV
Sbjct: 1   MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 130 LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 189
           LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 190 LLPKKVGKDKGDIGSASQEF 210
           LLPKKVGKDKGDIGSASQEF
Sbjct: 121 LLPKKVGKDKGDIGSASQEF 140

[Close]

BLAST of CsaV3_1G039370 vs. TrEMBL
Match: tr|V4TA53|V4TA53_9ROSI (Histone H2A OS=Citrus clementina OX=85681 GN=CICLE_v10002804mg PE=3 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 6.4e-68
Identity = 138/140 (98.57%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 70  MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 129
           MSSTGGSTKGGRGKPKA+KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV
Sbjct: 1   MSSTGGSTKGGRGKPKASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 130 LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 189
           LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 190 LLPKKVGKDKGDIGSASQEF 210
           LLPKKVGK KGDIGSASQEF
Sbjct: 121 LLPKKVGKGKGDIGSASQEF 140

[Close]

BLAST of CsaV3_1G039370 vs. TrEMBL
Match: tr|A0A2H5Q2I1|A0A2H5Q2I1_CITUN (Histone H2A OS=Citrus unshiu OX=55188 GN=CUMW_189470 PE=3 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 1.4e-67
Identity = 137/140 (97.86%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 70  MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 129
           MSSTGGSTKGGRGKPKA+KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV
Sbjct: 1   MSSTGGSTKGGRGKPKASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 130 LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 189
           LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 190 LLPKKVGKDKGDIGSASQEF 210
           LLPKK+GK KGDIGSASQEF
Sbjct: 121 LLPKKMGKGKGDIGSASQEF 140

[Close]

BLAST of CsaV3_1G039370 vs. TrEMBL
Match: tr|A0A0B0NVE5|A0A0B0NVE5_GOSAR (Histone H2A OS=Gossypium arboreum OX=29729 GN=F383_22140 PE=3 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 3.2e-67
Identity = 136/140 (97.14%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 70  MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 129
           MSSTGGSTKGGRGKPKA+KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV
Sbjct: 1   MSSTGGSTKGGRGKPKASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 130 LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 189
           LEYLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT
Sbjct: 61  LEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 190 LLPKKVGKDKGDIGSASQEF 210
           LLPKK+GKDKG+IGSASQEF
Sbjct: 121 LLPKKMGKDKGEIGSASQEF 140

The following BLAST results are available for this feature:

BLAST of CsaV3_1G039370 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004135645.1	5.2e-69	100.00	PREDICTED: histone H2AX [Cucumis sativus] >XP_008450716.1 PREDICTED: histone H2A...	[more]
XP_022154594.1	2.0e-68	99.29	probable histone H2AXb [Momordica charantia]	[more]
XP_006433236.1	9.7e-68	98.57	histone H2AX [Citrus clementina] >XP_006471940.1 histone H2AX [Citrus sinensis] ...	[more]
GAY58772.1	2.2e-67	97.86	hypothetical protein CUMW_189470 [Citrus unshiu]	[more]
RDX68066.1	3.7e-67	80.56	Histone H2AX, partial [Mucuna pruriens]	[more]

BLAST of CsaV3_1G039370 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G54690.1	7.7e-67	94.37	gamma histone variant H2AX	[more]
AT1G08880.1	1.7e-66	93.62	Histone superfamily protein	[more]
AT4G27230.1	3.5e-51	85.48	histone H2A 2	[more]
AT5G54640.1	1.0e-50	84.80	Histone superfamily protein	[more]
AT1G51060.1	6.5e-50	83.06	histone H2A 10	[more]

BLAST of CsaV3_1G039370 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9S9K7\|H2AXB_ARATH	1.4e-65	94.37	Probable histone H2AXb OS=Arabidopsis thaliana OX=3702 GN=At1g54690 PE=1 SV=1	[more]
sp\|O04848\|H2AXA_ARATH	3.1e-65	93.62	Probable histone H2AXa OS=Arabidopsis thaliana OX=3702 GN=At1g08880 PE=1 SV=1	[more]
sp\|O65759\|H2AX_CICAR	4.0e-65	94.29	Histone H2AX OS=Cicer arietinum OX=3827 GN=HIS2A PE=2 SV=1	[more]
sp\|P35063\|H2AX_PICAB	2.2e-63	91.43	Histone H2AX OS=Picea abies OX=3329 PE=2 SV=1	[more]
sp\|A2XLI0\|H2AXA_ORYSI	3.1e-57	87.14	Probable histone H2AXa OS=Oryza sativa subsp. indica OX=39946 GN=OsI_012923 PE=3...	[more]

BLAST of CsaV3_1G039370 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BQI1\|A0A1S3BQI1_CUCME	3.4e-69	100.00	Histone H2A OS=Cucumis melo OX=3656 GN=LOC103492212 PE=3 SV=1	[more]
tr\|A0A0A0LW51\|A0A0A0LW51_CUCSA	3.4e-69	100.00	Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_1G572950 PE=3 SV=1	[more]
tr\|V4TA53\|V4TA53_9ROSI	6.4e-68	98.57	Histone H2A OS=Citrus clementina OX=85681 GN=CICLE_v10002804mg PE=3 SV=1	[more]
tr\|A0A2H5Q2I1\|A0A2H5Q2I1_CITUN	1.4e-67	97.86	Histone H2A OS=Citrus unshiu OX=55188 GN=CUMW_189470 PE=3 SV=1	[more]
tr\|A0A0B0NVE5\|A0A0B0NVE5_GOSAR	3.2e-67	97.14	Histone H2A OS=Gossypium arboreum OX=29729 GN=F383_22140 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046982	protein heterodimerization activity
GO:0003677	DNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0000786	nucleosome
GO:0005634	nucleus

Vocabulary: **INTERPRO**
Term	Definition
IPR032458	Histone_H2A_CS
IPR009072	Histone-fold
IPR032454	Histone_H2A_C
IPR007125	Histone_H2A/H2B/H3
IPR002119	Histone_H2A

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0008283	cell proliferation
biological_process	GO:0001510	RNA methylation
biological_process	GO:0030003	cellular cation homeostasis
biological_process	GO:0070838	divalent metal ion transport
biological_process	GO:0006342	chromatin silencing
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0000790	nuclear chromatin
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G039370.1	CsaV3_1G039370.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002119	Histone H2A	PRINTS	PR00620	HISTONEH2A	coord: 132..145 score: 89.46 coord: 174..192 score: 70.23 coord: 88..110 score: 69.77 coord: 117..132 score: 84.58 coord: 146..160 score: 75.49
IPR002119	Histone H2A	SMART	SM00414	h2a4	coord: 77..197 e-value: 1.0E-76 score: 270.9
IPR002119	Histone H2A	CDD	cd00074	H2A	coord: 82..194 e-value: 1.64307E-69 score: 209.499
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 68..163 e-value: 1.4E-14 score: 54.5
IPR032454	Histone H2A, C-terminal domain	PFAM	PF16211	Histone_H2A_C	coord: 166..199 e-value: 5.7E-18 score: 64.3
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 76..202 e-value: 3.4E-60 score: 203.4
IPR009072	Histone-fold	SUPERFAMILY	SSF47113	Histone-fold	coord: 91..194
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..93
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 73..208
None	No IPR available	PANTHER	PTHR23430:SF207	SUBFAMILY NOT NAMED	coord: 73..208
IPR032458	Histone H2A conserved site	PROSITE	PS00046	HISTONE_H2A	coord: 96..102

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_1G039370	CSPI01G27050	Wild cucumber (PI 183967)	cpicucB000
CsaV3_1G039370	Cucsa.163750	Cucumber (Gy14) v1	cgycucB259
CsaV3_1G039370	CmaCh11G011090	Cucurbita maxima (Rimu)	cmacucB0114
CsaV3_1G039370	CmaCh10G011090	Cucurbita maxima (Rimu)	cmacucB0075
CsaV3_1G039370	CmoCh10G011920	Cucurbita moschata (Rifu)	cmocucB0064
CsaV3_1G039370	CmoCh11G011440	Cucurbita moschata (Rifu)	cmocucB0102
CsaV3_1G039370	Cp4.1LG18g00560	Cucurbita pepo (Zucchini)	cpecucB0438
CsaV3_1G039370	Cp4.1LG04g00730	Cucurbita pepo (Zucchini)	cpecucB0817
CsaV3_1G039370	CsGy1G026230	Cucumber (Gy14) v2	cgybcucB001
CsaV3_1G039370	Carg21137	Silver-seed gourd	carcucB0587
CsaV3_1G039370	Cla011310	Watermelon (97103) v1	cucwmB025
CsaV3_1G039370	MELO3C015363	Melon (DHL92) v3.5.1	cucmeB042
CsaV3_1G039370	ClCG03G016620	Watermelon (Charleston Gray)	cucwcgB050
CsaV3_1G039370	Lsi06G001690	Bottle gourd (USVL1VR-Ls)	cuclsiB068
CsaV3_1G039370	MELO3C015363.2	Melon (DHL92) v3.6.1	cucmedB039
CsaV3_1G039370	Cla97C03G066930	Watermelon (97103) v2	cucwmbB041
CsaV3_1G039370	Bhi02G001773	Wax gourd	cucwgoB113

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None