CmoCh10G011920 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh10G011920
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Histone H2A
Location	Cmo_Chr10 : 10908595 .. 10909465 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTCCACCAAGGGCGGTAGAGGAAAGCCGCAAGCCACCAAATCCGTTACACGATCGCATAAAGCCGGCCTCCAGTTCCCCGTCGGTAGAATCGCAAGGTTTCTCAAGGCCGGAAAGTACGCCGAGCGTGTCGGCGCTGGCGCTCCAGTATATTTGTCGGCCGTTCTCGAGTATCTTGCCGCCGAGGTAACAAGATCCGTTGTCTTTGTTCCTTTTTTCAGCGATTTTGATGCGGTTCTGTTCTTATCTCTGTTTCTGATAATTTTAAATCGGAATTAGGTTTTGGAGCTTGCTGGAAATGCTGCTAGAGACAACAAGAAGAATCGTATTGTGCCGAGGCACATCCAACTTGCTGTGAGGAACGATGAGGAGTTGAGTAAGCTTTTAGGATCTGTAACCATTGCTAATGGAGGTGTTTTGCCCAATATTCACCAAACTCTTTTGCCTAAAAAGGTCGGCAAAGACAAGGGTGATATCGGTTCTGCATCACAGGAATTTTAGGGCTTATAGGATTTTCAGTGCTGGCTTGTATTGCATTTGTTGTGTTCTCTGAGTTGTATCATCTTGATTTTGTTCAGATGCATACGTTTTTACATCTATGCAAGGCTGTTTGTTGTTGGAACAACTTTGCAACAAAATTTTGGTCTACATTTACACAAATTTGCAGTTAGAAAGCTGGTGCATCTATTTGATCTCTGCATTTTGAGTTTGGCTTCACAACCATATGAATTATTTGTCCAGTTTATGTTGGAATCGTGAATTTTGATTTTGTTTCTTTGATTAATTTAGTTTGTTTTCTAGTTTTAATTGTGGAGATTTGAAGTTCAAGGTTACATATATTTTTTTTTATATTGAGTTGGAATCATTT

mRNA sequence

ATGAGTTCCACCAAGGGCGGTAGAGGAAAGCCGCAAGCCACCAAATCCGTTACACGATCGCATAAAGCCGGCCTCCAGTTCCCCGTCGGTAGAATCGCAAGGTTTCTCAAGGCCGGAAAGTACGCCGAGCGTGTCGGCGCTGGCGCTCCAGTATATTTGTCGGCCGTTCTCGAGTATCTTGCCGCCGAGGTAACAAGATCCGTTGTCTTTGTTCCTTTTTTCAGCGATTTTGATGCGGTTTTGGAGCTTGCTGGAAATGCTGCTAGAGACAACAAGAAGAATCGTATTGTGCCGAGGCACATCCAACTTGCTGTGAGGAACGATGAGGAGTTGAGTAAGCTTTTAGGATCTGTAACCATTGCTAATGGAGGTGTTTTGCCCAATATTCACCAAACTCTTTTGCCTAAAAAGGTCGGCAAAGACAAGGGTGATATCGGTTCTGCATCACAGGAATTTTAGGGCTTATAGGATTTTCAGTGCTGGCTTGTATTGCATTTGTTGTGTTCTCTGAGTTGTATCATCTTGATTTTGTTCAGATGCATACGTTTTTACATCTATGCAAGGCTGTTTGTTGTTGGAACAACTTTGCAACAAAATTTTGGTCTACATTTACACAAATTTGCAGTTAGAAAGCTGGTGCATCTATTTGATCTCTGCATTTTGAGTTTGGCTTCACAACCATATGAATTATTTGTCCAGTTTATGTTGGAATCGTGAATTTTGATTTTGTTTCTTTGATTAATTTAGTTTGTTTTCTAGTTTTAATTGTGGAGATTTGAAGTTCAAGGTTACATATATTTTTTTTTATATTGAGTTGGAATCATTT

Coding sequence (CDS)

ATGAGTTCCACCAAGGGCGGTAGAGGAAAGCCGCAAGCCACCAAATCCGTTACACGATCGCATAAAGCCGGCCTCCAGTTCCCCGTCGGTAGAATCGCAAGGTTTCTCAAGGCCGGAAAGTACGCCGAGCGTGTCGGCGCTGGCGCTCCAGTATATTTGTCGGCCGTTCTCGAGTATCTTGCCGCCGAGGTAACAAGATCCGTTGTCTTTGTTCCTTTTTTCAGCGATTTTGATGCGGTTTTGGAGCTTGCTGGAAATGCTGCTAGAGACAACAAGAAGAATCGTATTGTGCCGAGGCACATCCAACTTGCTGTGAGGAACGATGAGGAGTTGAGTAAGCTTTTAGGATCTGTAACCATTGCTAATGGAGGTGTTTTGCCCAATATTCACCAAACTCTTTTGCCTAAAAAGGTCGGCAAAGACAAGGGTGATATCGGTTCTGCATCACAGGAATTTTAG

Homology

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BLAST of CmoCh10G011920 vs. Swiss-Prot
Match: H2AXB_ARATH (Probable histone H2AXb OS=Arabidopsis thaliana GN=At1g54690 PE=1 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 2.5e-61
Identity = 127/150 (84.67%), Postives = 131/150 (87.33%), Query Frame = 1


Query: 3   STKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 62
           +TKGGRGKP+ATKSV+RS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA
Sbjct: 9   TTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 68

Query: 63  EVTRSVVFVPFFSDFDAVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIAN 122
           EV                LELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLGSVTIAN
Sbjct: 69  EV----------------LELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIAN 128

Query: 123 GGVLPNIHQTLLPKKVGKDKGDIGSASQEF 153
           GGVLPNIHQTLLP KVGK+KGDIGSASQEF
Sbjct: 129 GGVLPNIHQTLLPSKVGKNKGDIGSASQEF 142

[Close]

BLAST of CmoCh10G011920 vs. Swiss-Prot
Match: H2AXA_ARATH (Probable histone H2AXa OS=Arabidopsis thaliana GN=At1g08880 PE=1 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 5.6e-61
Identity = 126/150 (84.00%), Postives = 131/150 (87.33%), Query Frame = 1


Query: 3   STKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 62
           +TKGGRGKP+ATKSV+RS KAGLQFPVGRIARFLK+GKYAERVGAGAPVYLSAVLEYLAA
Sbjct: 9   TTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSAVLEYLAA 68

Query: 63  EVTRSVVFVPFFSDFDAVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIAN 122
           EV                LELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLGSVTIAN
Sbjct: 69  EV----------------LELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIAN 128

Query: 123 GGVLPNIHQTLLPKKVGKDKGDIGSASQEF 153
           GGVLPNIHQTLLP KVGK+KGDIGSASQEF
Sbjct: 129 GGVLPNIHQTLLPSKVGKNKGDIGSASQEF 142

[Close]

BLAST of CmoCh10G011920 vs. Swiss-Prot
Match: H2AX_CICAR (Histone H2AX OS=Cicer arietinum GN=HIS2A PE=2 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 7.3e-61
Identity = 126/151 (83.44%), Postives = 132/151 (87.42%), Query Frame = 1


Query: 2   SSTKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLA 61
           ++TKGGRGKP+A+KSV+RS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLA
Sbjct: 5   ATTKGGRGKPKASKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLA 64

Query: 62  AEVTRSVVFVPFFSDFDAVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIA 121
           AEV                LELAGNAARDNK NRIVPRHIQLAVRNDEELSKLLGSVTIA
Sbjct: 65  AEV----------------LELAGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIA 124

Query: 122 NGGVLPNIHQTLLPKKVGKDKGDIGSASQEF 153
           NGGVLPNIHQTLLPKKVGK KG+IGSASQEF
Sbjct: 125 NGGVLPNIHQTLLPKKVGKGKGEIGSASQEF 139

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BLAST of CmoCh10G011920 vs. Swiss-Prot
Match: H2AX_PICAB (Histone H2AX OS=Picea abies PE=2 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 3.1e-59
Identity = 123/151 (81.46%), Postives = 129/151 (85.43%), Query Frame = 1


Query: 2   SSTKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLA 61
           S  KGGRGK ++TKSV+RS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVLEYLA
Sbjct: 4   SGAKGGRGKAKSTKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLA 63

Query: 62  AEVTRSVVFVPFFSDFDAVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIA 121
           AEV                LELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG+VTIA
Sbjct: 64  AEV----------------LELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGAVTIA 123

Query: 122 NGGVLPNIHQTLLPKKVGKDKGDIGSASQEF 153
           NGGVLPNIHQ LLPKK GKDKG+IGSASQEF
Sbjct: 124 NGGVLPNIHQVLLPKKSGKDKGEIGSASQEF 138

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BLAST of CmoCh10G011920 vs. Swiss-Prot
Match: H2AXB_ORYSJ (Probable histone H2AXb OS=Oryza sativa subsp. japonica GN=Os12g0530000 PE=2 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 1.1e-56
Identity = 119/147 (80.95%), Postives = 125/147 (85.03%), Query Frame = 1


Query: 6   GGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVT 65
           GGRGK + +KSV+RS KAGLQFPVGRIAR+LKAGKYAERVGAGAPVYLSAVLEYLAAEV 
Sbjct: 8   GGRGKSKGSKSVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEV- 67

Query: 66  RSVVFVPFFSDFDAVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGV 125
                          LELAGNAARDNKKNRIVPRHIQLAVRNDEELS+LLG+VTIA GGV
Sbjct: 68  ---------------LELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGV 127

Query: 126 LPNIHQTLLPKKVGKDKGDIGSASQEF 153
           LPNIHQTLLPKK GKDK DIGSASQEF
Sbjct: 128 LPNIHQTLLPKKGGKDKADIGSASQEF 138

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BLAST of CmoCh10G011920 vs. TrEMBL
Match: A0A0A0LW51_CUCSA (Histone H2A OS=Cucumis sativus GN=Csa_1G572950 PE=3 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 1.6e-62
Identity = 132/150 (88.00%), Postives = 134/150 (89.33%), Query Frame = 1


Query: 3   STKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 62
           STKGGRGKP+ATKSV+RSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA
Sbjct: 7   STKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 66

Query: 63  EVTRSVVFVPFFSDFDAVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIAN 122
           EV                LELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIAN
Sbjct: 67  EV----------------LELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIAN 126

Query: 123 GGVLPNIHQTLLPKKVGKDKGDIGSASQEF 153
           GGVLPNIHQTLLPKKVGKDKGDIGSASQEF
Sbjct: 127 GGVLPNIHQTLLPKKVGKDKGDIGSASQEF 140

[Close]

BLAST of CmoCh10G011920 vs. TrEMBL
Match: B9MZP0_POPTR (Histone H2A OS=Populus trichocarpa GN=POPTR_0005s04260g PE=3 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 3.0e-61
Identity = 130/151 (86.09%), Postives = 134/151 (88.74%), Query Frame = 1


Query: 2   SSTKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLA 61
           +STKGGRGKP+A+KSV+RSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLA
Sbjct: 8   ASTKGGRGKPKASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLA 67

Query: 62  AEVTRSVVFVPFFSDFDAVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIA 121
           AEV                LELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIA
Sbjct: 68  AEV----------------LELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIA 127

Query: 122 NGGVLPNIHQTLLPKKVGKDKGDIGSASQEF 153
           NGGVLPNIHQTLLPKKVGK KGDIGSASQEF
Sbjct: 128 NGGVLPNIHQTLLPKKVGKGKGDIGSASQEF 142

[Close]

BLAST of CmoCh10G011920 vs. TrEMBL
Match: M5W1R5_PRUPE (Histone H2A OS=Prunus persica GN=PRUPE_ppa013072mg PE=3 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 3.0e-61
Identity = 130/150 (86.67%), Postives = 133/150 (88.67%), Query Frame = 1


Query: 3   STKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 62
           STKGGRGKP+A+KSV+RSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA
Sbjct: 8   STKGGRGKPKASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 67

Query: 63  EVTRSVVFVPFFSDFDAVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIAN 122
           EV                LELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIAN
Sbjct: 68  EV----------------LELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIAN 127

Query: 123 GGVLPNIHQTLLPKKVGKDKGDIGSASQEF 153
           GGVLPNIHQTLLPKKVGK KGDIGSASQEF
Sbjct: 128 GGVLPNIHQTLLPKKVGKGKGDIGSASQEF 141

[Close]

BLAST of CmoCh10G011920 vs. TrEMBL
Match: V4TA53_9ROSI (Histone H2A OS=Citrus clementina GN=CICLE_v10002804mg PE=3 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 3.0e-61
Identity = 130/150 (86.67%), Postives = 133/150 (88.67%), Query Frame = 1


Query: 3   STKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 62
           STKGGRGKP+A+KSV+RSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA
Sbjct: 7   STKGGRGKPKASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 66

Query: 63  EVTRSVVFVPFFSDFDAVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIAN 122
           EV                LELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIAN
Sbjct: 67  EV----------------LELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIAN 126

Query: 123 GGVLPNIHQTLLPKKVGKDKGDIGSASQEF 153
           GGVLPNIHQTLLPKKVGK KGDIGSASQEF
Sbjct: 127 GGVLPNIHQTLLPKKVGKGKGDIGSASQEF 140

[Close]

BLAST of CmoCh10G011920 vs. TrEMBL
Match: A0A0B0NVE5_GOSAR (Histone H2A OS=Gossypium arboreum GN=F383_22140 PE=3 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 1.5e-60
Identity = 128/150 (85.33%), Postives = 133/150 (88.67%), Query Frame = 1


Query: 3   STKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 62
           STKGGRGKP+A+KSV+RSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA
Sbjct: 7   STKGGRGKPKASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 66

Query: 63  EVTRSVVFVPFFSDFDAVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIAN 122
           EV                LELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLGSVTIAN
Sbjct: 67  EV----------------LELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIAN 126

Query: 123 GGVLPNIHQTLLPKKVGKDKGDIGSASQEF 153
           GGVLPNIHQTLLPKK+GKDKG+IGSASQEF
Sbjct: 127 GGVLPNIHQTLLPKKMGKDKGEIGSASQEF 140

[Close]

BLAST of CmoCh10G011920 vs. TAIR10
Match: AT1G54690.1 (AT1G54690.1 gamma histone variant H2AX)

HSP 1 Score: 236.1 bits (601), Expect = 1.4e-62
Identity = 127/150 (84.67%), Postives = 131/150 (87.33%), Query Frame = 1


Query: 3   STKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 62
           +TKGGRGKP+ATKSV+RS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA
Sbjct: 9   TTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 68

Query: 63  EVTRSVVFVPFFSDFDAVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIAN 122
           EV                LELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLGSVTIAN
Sbjct: 69  EV----------------LELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIAN 128

Query: 123 GGVLPNIHQTLLPKKVGKDKGDIGSASQEF 153
           GGVLPNIHQTLLP KVGK+KGDIGSASQEF
Sbjct: 129 GGVLPNIHQTLLPSKVGKNKGDIGSASQEF 142

[Close]

BLAST of CmoCh10G011920 vs. TAIR10
Match: AT1G08880.1 (AT1G08880.1 Histone superfamily protein)

HSP 1 Score: 235.0 bits (598), Expect = 3.1e-62
Identity = 126/150 (84.00%), Postives = 131/150 (87.33%), Query Frame = 1


Query: 3   STKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 62
           +TKGGRGKP+ATKSV+RS KAGLQFPVGRIARFLK+GKYAERVGAGAPVYLSAVLEYLAA
Sbjct: 9   TTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSAVLEYLAA 68

Query: 63  EVTRSVVFVPFFSDFDAVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIAN 122
           EV                LELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLGSVTIAN
Sbjct: 69  EV----------------LELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIAN 128

Query: 123 GGVLPNIHQTLLPKKVGKDKGDIGSASQEF 153
           GGVLPNIHQTLLP KVGK+KGDIGSASQEF
Sbjct: 129 GGVLPNIHQTLLPSKVGKNKGDIGSASQEF 142

[Close]

BLAST of CmoCh10G011920 vs. TAIR10
Match: AT4G27230.1 (AT4G27230.1 histone H2A 2)

HSP 1 Score: 188.0 bits (476), Expect = 4.4e-48
Identity = 105/140 (75.00%), Postives = 108/140 (77.14%), Query Frame = 1


Query: 7   GRGKP----QATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 66
           GRGK      A KS +RS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVLEYLAA
Sbjct: 3   GRGKQLGSGAAKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAA 62

Query: 67  EVTRSVVFVPFFSDFDAVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIAN 126
           E                VLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIAN
Sbjct: 63  E----------------VLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIAN 122

Query: 127 GGVLPNIHQTLLPKKVGKDK 143
           GGV+PNIH  LLPKK G  K
Sbjct: 123 GGVMPNIHNLLLPKKAGSSK 126

[Close]

BLAST of CmoCh10G011920 vs. TAIR10
Match: AT1G51060.1 (AT1G51060.1 histone H2A 10)

HSP 1 Score: 186.4 bits (472), Expect = 1.3e-47
Identity = 104/140 (74.29%), Postives = 107/140 (76.43%), Query Frame = 1


Query: 7   GRGKP----QATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 66
           GRGK      A K+ TRS KAGLQFPVGRIARFLK GKYAERVGAGAPVYL+AVLEYLAA
Sbjct: 3   GRGKTLGSGSAKKATTRSSKAGLQFPVGRIARFLKKGKYAERVGAGAPVYLAAVLEYLAA 62

Query: 67  EVTRSVVFVPFFSDFDAVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIAN 126
           E                VLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIAN
Sbjct: 63  E----------------VLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIAN 122

Query: 127 GGVLPNIHQTLLPKKVGKDK 143
           GGV+PNIH  LLPKK G  K
Sbjct: 123 GGVMPNIHNLLLPKKTGASK 126

[Close]

BLAST of CmoCh10G011920 vs. TAIR10
Match: AT5G54640.1 (AT5G54640.1 Histone superfamily protein)

HSP 1 Score: 186.0 bits (471), Expect = 1.7e-47
Identity = 104/140 (74.29%), Postives = 108/140 (77.14%), Query Frame = 1


Query: 7   GRGKPQ----ATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 66
           GRGK      A K+ +RS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVLEYLAA
Sbjct: 3   GRGKTLGSGGAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAA 62

Query: 67  EVTRSVVFVPFFSDFDAVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIAN 126
           E                VLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIAN
Sbjct: 63  E----------------VLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIAN 122

Query: 127 GGVLPNIHQTLLPKKVGKDK 143
           GGV+PNIH  LLPKK G  K
Sbjct: 123 GGVMPNIHNLLLPKKAGASK 126

[Close]

BLAST of CmoCh10G011920 vs. NCBI nr
Match: gi|449435726|ref|XP_004135645.1| (PREDICTED: histone H2AX [Cucumis sativus])

HSP 1 Score: 246.9 bits (629), Expect = 2.3e-62
Identity = 132/150 (88.00%), Postives = 134/150 (89.33%), Query Frame = 1


Query: 3   STKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 62
           STKGGRGKP+ATKSV+RSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA
Sbjct: 7   STKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 66

Query: 63  EVTRSVVFVPFFSDFDAVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIAN 122
           EV                LELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIAN
Sbjct: 67  EV----------------LELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIAN 126

Query: 123 GGVLPNIHQTLLPKKVGKDKGDIGSASQEF 153
           GGVLPNIHQTLLPKKVGKDKGDIGSASQEF
Sbjct: 127 GGVLPNIHQTLLPKKVGKDKGDIGSASQEF 140

[Close]

BLAST of CmoCh10G011920 vs. NCBI nr
Match: gi|566169383|ref|XP_006382663.1| (histone H2A family protein [Populus trichocarpa])

HSP 1 Score: 242.7 bits (618), Expect = 4.3e-61
Identity = 130/151 (86.09%), Postives = 134/151 (88.74%), Query Frame = 1


Query: 2   SSTKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLA 61
           +STKGGRGKP+A+KSV+RSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLA
Sbjct: 8   ASTKGGRGKPKASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLA 67

Query: 62  AEVTRSVVFVPFFSDFDAVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIA 121
           AEV                LELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIA
Sbjct: 68  AEV----------------LELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIA 127

Query: 122 NGGVLPNIHQTLLPKKVGKDKGDIGSASQEF 153
           NGGVLPNIHQTLLPKKVGK KGDIGSASQEF
Sbjct: 128 NGGVLPNIHQTLLPKKVGKGKGDIGSASQEF 142

[Close]

BLAST of CmoCh10G011920 vs. NCBI nr
Match: gi|567881355|ref|XP_006433236.1| (hypothetical protein CICLE_v10002804mg [Citrus clementina])

HSP 1 Score: 242.7 bits (618), Expect = 4.3e-61
Identity = 130/150 (86.67%), Postives = 133/150 (88.67%), Query Frame = 1


Query: 3   STKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 62
           STKGGRGKP+A+KSV+RSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA
Sbjct: 7   STKGGRGKPKASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 66

Query: 63  EVTRSVVFVPFFSDFDAVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIAN 122
           EV                LELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIAN
Sbjct: 67  EV----------------LELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIAN 126

Query: 123 GGVLPNIHQTLLPKKVGKDKGDIGSASQEF 153
           GGVLPNIHQTLLPKKVGK KGDIGSASQEF
Sbjct: 127 GGVLPNIHQTLLPKKVGKGKGDIGSASQEF 140

[Close]

BLAST of CmoCh10G011920 vs. NCBI nr
Match: gi|595830649|ref|XP_007206117.1| (hypothetical protein PRUPE_ppa013072mg [Prunus persica])

HSP 1 Score: 242.7 bits (618), Expect = 4.3e-61
Identity = 130/150 (86.67%), Postives = 133/150 (88.67%), Query Frame = 1


Query: 3   STKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 62
           STKGGRGKP+A+KSV+RSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA
Sbjct: 8   STKGGRGKPKASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 67

Query: 63  EVTRSVVFVPFFSDFDAVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIAN 122
           EV                LELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIAN
Sbjct: 68  EV----------------LELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIAN 127

Query: 123 GGVLPNIHQTLLPKKVGKDKGDIGSASQEF 153
           GGVLPNIHQTLLPKKVGK KGDIGSASQEF
Sbjct: 128 GGVLPNIHQTLLPKKVGKGKGDIGSASQEF 141

[Close]

BLAST of CmoCh10G011920 vs. NCBI nr
Match: gi|743910741|ref|XP_011048890.1| (PREDICTED: histone H2AX [Populus euphratica])

HSP 1 Score: 242.3 bits (617), Expect = 5.6e-61
Identity = 129/151 (85.43%), Postives = 134/151 (88.74%), Query Frame = 1


Query: 2   SSTKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLA 61
           +STKGGRGKP+A+KSV+RSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLA
Sbjct: 8   ASTKGGRGKPKASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLA 67

Query: 62  AEVTRSVVFVPFFSDFDAVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIA 121
           AEV                LELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIA
Sbjct: 68  AEV----------------LELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIA 127

Query: 122 NGGVLPNIHQTLLPKKVGKDKGDIGSASQEF 153
           NGGVLPNIHQTLLPKK+GK KGDIGSASQEF
Sbjct: 128 NGGVLPNIHQTLLPKKIGKGKGDIGSASQEF 142

The following BLAST results are available for this feature:

BLAST of CmoCh10G011920 vs. Swiss-Prot


Match Name	E-value	Identity	Description
H2AXB_ARATH	2.5e-61	84.67	Probable histone H2AXb OS=Arabidopsis thaliana GN=At1g54690 PE=1 SV=1	[more]
H2AXA_ARATH	5.6e-61	84.00	Probable histone H2AXa OS=Arabidopsis thaliana GN=At1g08880 PE=1 SV=1	[more]
H2AX_CICAR	7.3e-61	83.44	Histone H2AX OS=Cicer arietinum GN=HIS2A PE=2 SV=1	[more]
H2AX_PICAB	3.1e-59	81.46	Histone H2AX OS=Picea abies PE=2 SV=1	[more]
H2AXB_ORYSJ	1.1e-56	80.95	Probable histone H2AXb OS=Oryza sativa subsp. japonica GN=Os12g0530000 PE=2 SV=1	[more]

BLAST of CmoCh10G011920 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LW51_CUCSA	1.6e-62	88.00	Histone H2A OS=Cucumis sativus GN=Csa_1G572950 PE=3 SV=1	[more]
B9MZP0_POPTR	3.0e-61	86.09	Histone H2A OS=Populus trichocarpa GN=POPTR_0005s04260g PE=3 SV=1	[more]
M5W1R5_PRUPE	3.0e-61	86.67	Histone H2A OS=Prunus persica GN=PRUPE_ppa013072mg PE=3 SV=1	[more]
V4TA53_9ROSI	3.0e-61	86.67	Histone H2A OS=Citrus clementina GN=CICLE_v10002804mg PE=3 SV=1	[more]
A0A0B0NVE5_GOSAR	1.5e-60	85.33	Histone H2A OS=Gossypium arboreum GN=F383_22140 PE=3 SV=1	[more]

BLAST of CmoCh10G011920 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G54690.1	1.4e-62	84.67	gamma histone variant H2AX	[more]
AT1G08880.1	3.1e-62	84.00	Histone superfamily protein	[more]
AT4G27230.1	4.4e-48	75.00	histone H2A 2	[more]
AT1G51060.1	1.3e-47	74.29	histone H2A 10	[more]
AT5G54640.1	1.7e-47	74.29	Histone superfamily protein	[more]

BLAST of CmoCh10G011920 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449435726\|ref\|XP_004135645.1\|	2.3e-62	88.00	PREDICTED: histone H2AX [Cucumis sativus]	[more]
gi\|566169383\|ref\|XP_006382663.1\|	4.3e-61	86.09	histone H2A family protein [Populus trichocarpa]	[more]
gi\|567881355\|ref\|XP_006433236.1\|	4.3e-61	86.67	hypothetical protein CICLE_v10002804mg [Citrus clementina]	[more]
gi\|595830649\|ref\|XP_007206117.1\|	4.3e-61	86.67	hypothetical protein PRUPE_ppa013072mg [Prunus persica]	[more]
gi\|743910741\|ref\|XP_011048890.1\|	5.6e-61	85.43	PREDICTED: histone H2AX [Populus euphratica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002119	Histone_H2A
IPR009072	Histone-fold

Vocabulary: **Cellular Component**
Term	Definition
GO:0000786	nucleosome
GO:0005634	nucleus

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0046982	protein heterodimerization activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0008283	cell proliferation
biological_process	GO:0001510	RNA methylation
biological_process	GO:0030003	cellular cation homeostasis
biological_process	GO:0070838	divalent metal ion transport
biological_process	GO:0006342	chromatin silencing
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0000790	nuclear chromatin
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh10G011920.1	CmoCh10G011920.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002119	Histone H2A	PRINTS	PR00620	HISTONEH2A	coord: 44..59 score: 2.3E-21coord: 59..72 score: 2.3E-21coord: 15..37 score: 2.3
IPR002119	Histone H2A	SMART	SM00414	h2a4	coord: 4..140 score: 4.2
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 8..138 score: 6.4
IPR009072	Histone-fold	unknown	SSF47113	Histone-fold	coord: 18..137 score: 2.49
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 2..64 score: 2.5E-111coord: 81..152 score: 2.5E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh10G011920	CmaCh10G011090	Cucurbita maxima (Rimu)	cmacmoB067
CmoCh10G011920	CmaCh11G011090	Cucurbita maxima (Rimu)	cmacmoB101
CmoCh10G011920	Cla011310	Watermelon (97103) v1	cmowmB041
CmoCh10G011920	Csa1G572950	Cucumber (Chinese Long) v2	cmocuB058
CmoCh10G011920	MELO3C015363	Melon (DHL92) v3.5.1	cmomeB063
CmoCh10G011920	ClCG03G016620	Watermelon (Charleston Gray)	cmowcgB048
CmoCh10G011920	CSPI01G27050	Wild cucumber (PI 183967)	cmocpiB059
CmoCh10G011920	Lsi06G001690	Bottle gourd (USVL1VR-Ls)	cmolsiB066
CmoCh10G011920	Cp4.1LG18g00560	Cucurbita pepo (Zucchini)	cmocpeB056
CmoCh10G011920	Cp4.1LG04g00730	Cucurbita pepo (Zucchini)	cmocpeB065
CmoCh10G011920	MELO3C015363.2	Melon (DHL92) v3.6.1	cmomedB066
CmoCh10G011920	CsaV3_1G039370	Cucumber (Chinese Long) v3	cmocucB0064
CmoCh10G011920	Cla97C03G066930	Watermelon (97103) v2	cmowmbB049
CmoCh10G011920	Bhi02G001773	Wax gourd	cmowgoB0073
CmoCh10G011920	CsGy1G026230	Cucumber (Gy14) v2	cgybcmoB022

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh10G011920	CmoCh11G011440	Cucurbita moschata (Rifu)	cmocmoB040

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh10G011920	Wax gourd	cmowgoB0084