Cp4.1LG04g00730 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG04g00730
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Histone H2A
Location	Cp4.1LG04 : 1219757 .. 1221020 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCCGCGAATCTAAAGCATCACCACGCTGGCAATCCGCGTGGTCGCTCTCTCAACCAATCACATCTCTCTCTTCGTTCCTATATATACCAAAATCATCACTCTTGCTTTCACCTTCAAGAAGCCGATACTCTTAGAAGCCACAGTTTAGGGTTTTTCGATTTTTCATCTCTGTCAAATTTCATCAGTTTCTTCCGATTCAACAATGAGTTCCACTAAGGGAGGCAGAGGAAAGCCCAAAGCCACCAAATCGGTCACACGATCGCACAAAGCCGGCCTCCAGTTCCCCGTCGGTCGAATCGCGAGGTTTCTAAAGGCTGGGAAGTACGCCGAGCGAGTCGGAGCTGGAGCCCCGGTGTATTTGTCTGCCGTTCTTGAGTATCTTGCCGCTGAGGTGACTGGATCCTCTGTTCTTTTGCTTTTTTAATTTGTAGTGGTTTTGATATAATGCTGTCTTTGATATAGAGTGTGTTCGTTTGGACTAGTTTTTCAAGTGCTTTAGTAAGGCAAAAATTGGTTTTCTTCTTTAAAATTAGTGTAACCAAGTAATAATCATTTTAGGAACAATCATTTTGGCTTAGAATCTAAAACGATTGATTAAAACAGCACTTCAAGAATCATCTTGTGGTGATTTAACACTTGTAGTTGTAGTATAATGAAGAAAATGTATCTGAGCACAGATTTTAATGGATCGAACTTGGAATTTTGTTTTTGATCTTGTATTTGTCGATTGGAATTAGGTATTGGAGCTTGCTGGGAACGCAGCAAGAGATAACAAGAAGAATCGTATTGTGCCAAGGCATATTCAGCTTGCCGTAAGGAACGATGAGGAGTTGAGCAAGCTTTTGGGGTGCGTAACCATTGCAAATGGAGGAGTTTTGCCCAACATTCACCAAACCCTTTTGCCTAAAAAGGTTGGTAAAGACAAGGGTGATATTGGGTCTGCATCACAAGAGTTCTAGGGTTTTAGGTTGTAATTTGGGGATGATTTTGGTTCTTTACCAGAGATGACAGAAGTGTGATGTTGAAATGAATGGGGTTTGGATCTGTTCCATTTGCTGGGTCATCTTGCTTAGTTTTGCTTAGATGCATATGGTTGGTCTGGATCCATGTAATGTTGTTATCAAGAATGATGATGATGATGGTGATACTCCCTTCTAGATTTAGAAGTATGAAATGTGTAATTTCTTGTTCAAAGCACTCAATTTTGTGTTCTTGATTATTTCTGCTTAATGGTTGCTTCGATCTGAAATGATTTTAGATAGA

mRNA sequence

TCCCGCGAATCTAAAGCATCACCACGCTGGCAATCCGCGTGGTCGCTCTCTCAACCAATCACATCTCTCTCTTCGTTCCTATATATACCAAAATCATCACTCTTGCTTTCACCTTCAAGAAGCCGATACTCTTAGAAGCCACAGTTTAGGGTTTTTCGATTTTTCATCTCTGTCAAATTTCATCAGTTTCTTCCGATTCAACAATGAGTTCCACTAAGGGAGGCAGAGGAAAGCCCAAAGCCACCAAATCGGTCACACGATCGCACAAAGCCGGCCTCCAGTTCCCCGTCGGTCGAATCGCGAGGTTTCTAAAGGCTGGGAAGTACGCCGAGCGAGTCGGAGCTGGAGCCCCGGTGTATTTGTCTGCCGTTCTTGAGTATCTTGCCGCTGAGGTATTGGAGCTTGCTGGGAACGCAGCAAGAGATAACAAGAAGAATCGTATTGTGCCAAGGCATATTCAGCTTGCCGTAAGGAACGATGAGGAGTTGAGCAAGCTTTTGGGGTGCGTAACCATTGCAAATGGAGGAGTTTTGCCCAACATTCACCAAACCCTTTTGCCTAAAAAGGTTGGTAAAGACAAGGGTGATATTGGGTCTGCATCACAAGAGTTCTAGGGTTTTAGGTTGTAATTTGGGGATGATTTTGGTTCTTTACCAGAGATGACAGAAGTGTGATGTTGAAATGAATGGGGTTTGGATCTGTTCCATTTGCTGGGTCATCTTGCTTAGTTTTGCTTAGATGCATATGGTTGGTCTGGATCCATGTAATGTTGTTATCAAGAATGATGATGATGATGGTGATACTCCCTTCTAGATTTAGAAGTATGAAATGTGTAATTTCTTGTTCAAAGCACTCAATTTTGTGTTCTTGATTATTTCTGCTTAATGGTTGCTTCGATCTGAAATGATTTTAGATAGA

Coding sequence (CDS)

ATGAGTTCCACTAAGGGAGGCAGAGGAAAGCCCAAAGCCACCAAATCGGTCACACGATCGCACAAAGCCGGCCTCCAGTTCCCCGTCGGTCGAATCGCGAGGTTTCTAAAGGCTGGGAAGTACGCCGAGCGAGTCGGAGCTGGAGCCCCGGTGTATTTGTCTGCCGTTCTTGAGTATCTTGCCGCTGAGGTATTGGAGCTTGCTGGGAACGCAGCAAGAGATAACAAGAAGAATCGTATTGTGCCAAGGCATATTCAGCTTGCCGTAAGGAACGATGAGGAGTTGAGCAAGCTTTTGGGGTGCGTAACCATTGCAAATGGAGGAGTTTTGCCCAACATTCACCAAACCCTTTTGCCTAAAAAGGTTGGTAAAGACAAGGGTGATATTGGGTCTGCATCACAAGAGTTCTAG

Protein sequence

MSSTKGGRGKPKATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGCVTIANGGVLPNIHQTLLPKKVGKDKGDIGSASQEF

Homology

[Close]

BLAST of Cp4.1LG04g00730 vs. Swiss-Prot
Match: H2AXB_ARATH (Probable histone H2AXb OS=Arabidopsis thaliana GN=At1g54690 PE=1 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 2.2e-64
Identity = 127/134 (94.78%), Postives = 130/134 (97.01%), Query Frame = 1


Query: 3   STKGGRGKPKATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 62
           +TKGGRGKPKATKSV+RS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA
Sbjct: 9   TTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 68

Query: 63  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGCVTIANGGVLPNIHQTLLPKKV 122
           EVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQTLLP KV
Sbjct: 69  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKV 128

Query: 123 GKDKGDIGSASQEF 137
           GK+KGDIGSASQEF
Sbjct: 129 GKNKGDIGSASQEF 142

[Close]

BLAST of Cp4.1LG04g00730 vs. Swiss-Prot
Match: H2AXA_ARATH (Probable histone H2AXa OS=Arabidopsis thaliana GN=At1g08880 PE=1 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 4.8e-64
Identity = 126/134 (94.03%), Postives = 130/134 (97.01%), Query Frame = 1


Query: 3   STKGGRGKPKATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 62
           +TKGGRGKPKATKSV+RS KAGLQFPVGRIARFLK+GKYAERVGAGAPVYLSAVLEYLAA
Sbjct: 9   TTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSAVLEYLAA 68

Query: 63  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGCVTIANGGVLPNIHQTLLPKKV 122
           EVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQTLLP KV
Sbjct: 69  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKV 128

Query: 123 GKDKGDIGSASQEF 137
           GK+KGDIGSASQEF
Sbjct: 129 GKNKGDIGSASQEF 142

[Close]

BLAST of Cp4.1LG04g00730 vs. Swiss-Prot
Match: H2AX_CICAR (Histone H2AX OS=Cicer arietinum GN=HIS2A PE=2 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 6.3e-64
Identity = 126/135 (93.33%), Postives = 131/135 (97.04%), Query Frame = 1


Query: 2   SSTKGGRGKPKATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLA 61
           ++TKGGRGKPKA+KSV+RS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLA
Sbjct: 5   ATTKGGRGKPKASKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLA 64

Query: 62  AEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGCVTIANGGVLPNIHQTLLPKK 121
           AEVLELAGNAARDNK NRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQTLLPKK
Sbjct: 65  AEVLELAGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 124

Query: 122 VGKDKGDIGSASQEF 137
           VGK KG+IGSASQEF
Sbjct: 125 VGKGKGEIGSASQEF 139

[Close]

BLAST of Cp4.1LG04g00730 vs. Swiss-Prot
Match: H2AX_PICAB (Histone H2AX OS=Picea abies PE=2 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 9.1e-63
Identity = 124/135 (91.85%), Postives = 128/135 (94.81%), Query Frame = 1


Query: 2   SSTKGGRGKPKATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLA 61
           S  KGGRGK K+TKSV+RS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVLEYLA
Sbjct: 4   SGAKGGRGKAKSTKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLA 63

Query: 62  AEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGCVTIANGGVLPNIHQTLLPKK 121
           AEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQ LLPKK
Sbjct: 64  AEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGAVTIANGGVLPNIHQVLLPKK 123

Query: 122 VGKDKGDIGSASQEF 137
            GKDKG+IGSASQEF
Sbjct: 124 SGKDKGEIGSASQEF 138

[Close]

BLAST of Cp4.1LG04g00730 vs. Swiss-Prot
Match: H2AXB_ORYSJ (Probable histone H2AXb OS=Oryza sativa subsp. japonica GN=Os12g0530000 PE=2 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 2.5e-60
Identity = 120/131 (91.60%), Postives = 124/131 (94.66%), Query Frame = 1


Query: 6   GGRGKPKATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVL 65
           GGRGK K +KSV+RS KAGLQFPVGRIAR+LKAGKYAERVGAGAPVYLSAVLEYLAAEVL
Sbjct: 8   GGRGKSKGSKSVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVL 67

Query: 66  ELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGCVTIANGGVLPNIHQTLLPKKVGKD 125
           ELAGNAARDNKKNRIVPRHIQLAVRNDEELS+LLG VTIA GGVLPNIHQTLLPKK GKD
Sbjct: 68  ELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGGKD 127

Query: 126 KGDIGSASQEF 137
           K DIGSASQEF
Sbjct: 128 KADIGSASQEF 138

[Close]

BLAST of Cp4.1LG04g00730 vs. TrEMBL
Match: A0A0A0LW51_CUCSA (Histone H2A OS=Cucumis sativus GN=Csa_1G572950 PE=3 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 1.4e-65
Identity = 132/134 (98.51%), Postives = 133/134 (99.25%), Query Frame = 1


Query: 3   STKGGRGKPKATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 62
           STKGGRGKPKATKSV+RSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA
Sbjct: 7   STKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 66

Query: 63  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGCVTIANGGVLPNIHQTLLPKKV 122
           EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQTLLPKKV
Sbjct: 67  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKV 126

Query: 123 GKDKGDIGSASQEF 137
           GKDKGDIGSASQEF
Sbjct: 127 GKDKGDIGSASQEF 140

[Close]

BLAST of Cp4.1LG04g00730 vs. TrEMBL
Match: B9MZP0_POPTR (Histone H2A OS=Populus trichocarpa GN=POPTR_0005s04260g PE=3 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 2.6e-64
Identity = 130/135 (96.30%), Postives = 133/135 (98.52%), Query Frame = 1


Query: 2   SSTKGGRGKPKATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLA 61
           +STKGGRGKPKA+KSV+RSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLA
Sbjct: 8   ASTKGGRGKPKASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLA 67

Query: 62  AEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGCVTIANGGVLPNIHQTLLPKK 121
           AEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQTLLPKK
Sbjct: 68  AEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 127

Query: 122 VGKDKGDIGSASQEF 137
           VGK KGDIGSASQEF
Sbjct: 128 VGKGKGDIGSASQEF 142

[Close]

BLAST of Cp4.1LG04g00730 vs. TrEMBL
Match: V4TA53_9ROSI (Histone H2A OS=Citrus clementina GN=CICLE_v10002804mg PE=3 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 2.6e-64
Identity = 130/134 (97.01%), Postives = 132/134 (98.51%), Query Frame = 1


Query: 3   STKGGRGKPKATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 62
           STKGGRGKPKA+KSV+RSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA
Sbjct: 7   STKGGRGKPKASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 66

Query: 63  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGCVTIANGGVLPNIHQTLLPKKV 122
           EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQTLLPKKV
Sbjct: 67  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKV 126

Query: 123 GKDKGDIGSASQEF 137
           GK KGDIGSASQEF
Sbjct: 127 GKGKGDIGSASQEF 140

[Close]

BLAST of Cp4.1LG04g00730 vs. TrEMBL
Match: M5W1R5_PRUPE (Histone H2A OS=Prunus persica GN=PRUPE_ppa013072mg PE=3 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 2.6e-64
Identity = 130/134 (97.01%), Postives = 132/134 (98.51%), Query Frame = 1


Query: 3   STKGGRGKPKATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 62
           STKGGRGKPKA+KSV+RSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA
Sbjct: 8   STKGGRGKPKASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 67

Query: 63  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGCVTIANGGVLPNIHQTLLPKKV 122
           EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQTLLPKKV
Sbjct: 68  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKV 127

Query: 123 GKDKGDIGSASQEF 137
           GK KGDIGSASQEF
Sbjct: 128 GKGKGDIGSASQEF 141

[Close]

BLAST of Cp4.1LG04g00730 vs. TrEMBL
Match: A0A0B0NVE5_GOSAR (Histone H2A OS=Gossypium arboreum GN=F383_22140 PE=3 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 1.3e-63
Identity = 128/134 (95.52%), Postives = 132/134 (98.51%), Query Frame = 1


Query: 3   STKGGRGKPKATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 62
           STKGGRGKPKA+KSV+RSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA
Sbjct: 7   STKGGRGKPKASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 66

Query: 63  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGCVTIANGGVLPNIHQTLLPKKV 122
           EVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQTLLPKK+
Sbjct: 67  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKM 126

Query: 123 GKDKGDIGSASQEF 137
           GKDKG+IGSASQEF
Sbjct: 127 GKDKGEIGSASQEF 140

[Close]

BLAST of Cp4.1LG04g00730 vs. TAIR10
Match: AT1G54690.1 (AT1G54690.1 gamma histone variant H2AX)

HSP 1 Score: 246.1 bits (627), Expect = 1.2e-65
Identity = 127/134 (94.78%), Postives = 130/134 (97.01%), Query Frame = 1


Query: 3   STKGGRGKPKATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 62
           +TKGGRGKPKATKSV+RS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA
Sbjct: 9   TTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 68

Query: 63  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGCVTIANGGVLPNIHQTLLPKKV 122
           EVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQTLLP KV
Sbjct: 69  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKV 128

Query: 123 GKDKGDIGSASQEF 137
           GK+KGDIGSASQEF
Sbjct: 129 GKNKGDIGSASQEF 142

[Close]

BLAST of Cp4.1LG04g00730 vs. TAIR10
Match: AT1G08880.1 (AT1G08880.1 Histone superfamily protein)

HSP 1 Score: 245.0 bits (624), Expect = 2.7e-65
Identity = 126/134 (94.03%), Postives = 130/134 (97.01%), Query Frame = 1


Query: 3   STKGGRGKPKATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 62
           +TKGGRGKPKATKSV+RS KAGLQFPVGRIARFLK+GKYAERVGAGAPVYLSAVLEYLAA
Sbjct: 9   TTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSAVLEYLAA 68

Query: 63  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGCVTIANGGVLPNIHQTLLPKKV 122
           EVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQTLLP KV
Sbjct: 69  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKV 128

Query: 123 GKDKGDIGSASQEF 137
           GK+KGDIGSASQEF
Sbjct: 129 GKNKGDIGSASQEF 142

[Close]

BLAST of Cp4.1LG04g00730 vs. TAIR10
Match: AT4G27230.1 (AT4G27230.1 histone H2A 2)

HSP 1 Score: 196.8 bits (499), Expect = 8.5e-51
Identity = 105/124 (84.68%), Postives = 108/124 (87.10%), Query Frame = 1


Query: 7   GRGKP----KATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 66
           GRGK      A KS +RS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVLEYLAA
Sbjct: 3   GRGKQLGSGAAKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAA 62

Query: 67  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGCVTIANGGVLPNIHQTLLPKKV 126
           EVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGV+PNIH  LLPKK 
Sbjct: 63  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKA 122

[Close]

BLAST of Cp4.1LG04g00730 vs. TAIR10
Match: AT1G51060.1 (AT1G51060.1 histone H2A 10)

HSP 1 Score: 195.3 bits (495), Expect = 2.5e-50
Identity = 104/124 (83.87%), Postives = 107/124 (86.29%), Query Frame = 1


Query: 7   GRGKP----KATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 66
           GRGK      A K+ TRS KAGLQFPVGRIARFLK GKYAERVGAGAPVYL+AVLEYLAA
Sbjct: 3   GRGKTLGSGSAKKATTRSSKAGLQFPVGRIARFLKKGKYAERVGAGAPVYLAAVLEYLAA 62

Query: 67  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGCVTIANGGVLPNIHQTLLPKKV 126
           EVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGV+PNIH  LLPKK 
Sbjct: 63  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT 122

[Close]

BLAST of Cp4.1LG04g00730 vs. TAIR10
Match: AT5G54640.1 (AT5G54640.1 Histone superfamily protein)

HSP 1 Score: 194.9 bits (494), Expect = 3.2e-50
Identity = 104/124 (83.87%), Postives = 108/124 (87.10%), Query Frame = 1


Query: 7   GRGKPK----ATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 66
           GRGK      A K+ +RS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVLEYLAA
Sbjct: 3   GRGKTLGSGGAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAA 62

Query: 67  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGCVTIANGGVLPNIHQTLLPKKV 126
           EVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGV+PNIH  LLPKK 
Sbjct: 63  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKA 122

[Close]

BLAST of Cp4.1LG04g00730 vs. NCBI nr
Match: gi|449435726|ref|XP_004135645.1| (PREDICTED: histone H2AX [Cucumis sativus])

HSP 1 Score: 256.9 bits (655), Expect = 2.0e-65
Identity = 132/134 (98.51%), Postives = 133/134 (99.25%), Query Frame = 1


Query: 3   STKGGRGKPKATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 62
           STKGGRGKPKATKSV+RSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA
Sbjct: 7   STKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 66

Query: 63  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGCVTIANGGVLPNIHQTLLPKKV 122
           EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQTLLPKKV
Sbjct: 67  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKV 126

Query: 123 GKDKGDIGSASQEF 137
           GKDKGDIGSASQEF
Sbjct: 127 GKDKGDIGSASQEF 140

[Close]

BLAST of Cp4.1LG04g00730 vs. NCBI nr
Match: gi|566169383|ref|XP_006382663.1| (histone H2A family protein [Populus trichocarpa])

HSP 1 Score: 252.7 bits (644), Expect = 3.7e-64
Identity = 130/135 (96.30%), Postives = 133/135 (98.52%), Query Frame = 1


Query: 2   SSTKGGRGKPKATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLA 61
           +STKGGRGKPKA+KSV+RSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLA
Sbjct: 8   ASTKGGRGKPKASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLA 67

Query: 62  AEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGCVTIANGGVLPNIHQTLLPKK 121
           AEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQTLLPKK
Sbjct: 68  AEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 127

Query: 122 VGKDKGDIGSASQEF 137
           VGK KGDIGSASQEF
Sbjct: 128 VGKGKGDIGSASQEF 142

[Close]

BLAST of Cp4.1LG04g00730 vs. NCBI nr
Match: gi|567881355|ref|XP_006433236.1| (hypothetical protein CICLE_v10002804mg [Citrus clementina])

HSP 1 Score: 252.7 bits (644), Expect = 3.7e-64
Identity = 130/134 (97.01%), Postives = 132/134 (98.51%), Query Frame = 1


Query: 3   STKGGRGKPKATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 62
           STKGGRGKPKA+KSV+RSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA
Sbjct: 7   STKGGRGKPKASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 66

Query: 63  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGCVTIANGGVLPNIHQTLLPKKV 122
           EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQTLLPKKV
Sbjct: 67  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKV 126

Query: 123 GKDKGDIGSASQEF 137
           GK KGDIGSASQEF
Sbjct: 127 GKGKGDIGSASQEF 140

[Close]

BLAST of Cp4.1LG04g00730 vs. NCBI nr
Match: gi|595830649|ref|XP_007206117.1| (hypothetical protein PRUPE_ppa013072mg [Prunus persica])

HSP 1 Score: 252.7 bits (644), Expect = 3.7e-64
Identity = 130/134 (97.01%), Postives = 132/134 (98.51%), Query Frame = 1


Query: 3   STKGGRGKPKATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 62
           STKGGRGKPKA+KSV+RSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA
Sbjct: 8   STKGGRGKPKASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 67

Query: 63  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGCVTIANGGVLPNIHQTLLPKKV 122
           EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQTLLPKKV
Sbjct: 68  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKV 127

Query: 123 GKDKGDIGSASQEF 137
           GK KGDIGSASQEF
Sbjct: 128 GKGKGDIGSASQEF 141

[Close]

BLAST of Cp4.1LG04g00730 vs. NCBI nr
Match: gi|743910741|ref|XP_011048890.1| (PREDICTED: histone H2AX [Populus euphratica])

HSP 1 Score: 252.3 bits (643), Expect = 4.8e-64
Identity = 129/135 (95.56%), Postives = 133/135 (98.52%), Query Frame = 1


Query: 2   SSTKGGRGKPKATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLA 61
           +STKGGRGKPKA+KSV+RSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLA
Sbjct: 8   ASTKGGRGKPKASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLA 67

Query: 62  AEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGCVTIANGGVLPNIHQTLLPKK 121
           AEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQTLLPKK
Sbjct: 68  AEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 127

Query: 122 VGKDKGDIGSASQEF 137
           +GK KGDIGSASQEF
Sbjct: 128 IGKGKGDIGSASQEF 142

The following BLAST results are available for this feature:

BLAST of Cp4.1LG04g00730 vs. Swiss-Prot


Match Name	E-value	Identity	Description
H2AXB_ARATH	2.2e-64	94.78	Probable histone H2AXb OS=Arabidopsis thaliana GN=At1g54690 PE=1 SV=1	[more]
H2AXA_ARATH	4.8e-64	94.03	Probable histone H2AXa OS=Arabidopsis thaliana GN=At1g08880 PE=1 SV=1	[more]
H2AX_CICAR	6.3e-64	93.33	Histone H2AX OS=Cicer arietinum GN=HIS2A PE=2 SV=1	[more]
H2AX_PICAB	9.1e-63	91.85	Histone H2AX OS=Picea abies PE=2 SV=1	[more]
H2AXB_ORYSJ	2.5e-60	91.60	Probable histone H2AXb OS=Oryza sativa subsp. japonica GN=Os12g0530000 PE=2 SV=1	[more]

BLAST of Cp4.1LG04g00730 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LW51_CUCSA	1.4e-65	98.51	Histone H2A OS=Cucumis sativus GN=Csa_1G572950 PE=3 SV=1	[more]
B9MZP0_POPTR	2.6e-64	96.30	Histone H2A OS=Populus trichocarpa GN=POPTR_0005s04260g PE=3 SV=1	[more]
V4TA53_9ROSI	2.6e-64	97.01	Histone H2A OS=Citrus clementina GN=CICLE_v10002804mg PE=3 SV=1	[more]
M5W1R5_PRUPE	2.6e-64	97.01	Histone H2A OS=Prunus persica GN=PRUPE_ppa013072mg PE=3 SV=1	[more]
A0A0B0NVE5_GOSAR	1.3e-63	95.52	Histone H2A OS=Gossypium arboreum GN=F383_22140 PE=3 SV=1	[more]

BLAST of Cp4.1LG04g00730 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G54690.1	1.2e-65	94.78	gamma histone variant H2AX	[more]
AT1G08880.1	2.7e-65	94.03	Histone superfamily protein	[more]
AT4G27230.1	8.5e-51	84.68	histone H2A 2	[more]
AT1G51060.1	2.5e-50	83.87	histone H2A 10	[more]
AT5G54640.1	3.2e-50	83.87	Histone superfamily protein	[more]

BLAST of Cp4.1LG04g00730 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449435726\|ref\|XP_004135645.1\|	2.0e-65	98.51	PREDICTED: histone H2AX [Cucumis sativus]	[more]
gi\|566169383\|ref\|XP_006382663.1\|	3.7e-64	96.30	histone H2A family protein [Populus trichocarpa]	[more]
gi\|567881355\|ref\|XP_006433236.1\|	3.7e-64	97.01	hypothetical protein CICLE_v10002804mg [Citrus clementina]	[more]
gi\|595830649\|ref\|XP_007206117.1\|	3.7e-64	97.01	hypothetical protein PRUPE_ppa013072mg [Prunus persica]	[more]
gi\|743910741\|ref\|XP_011048890.1\|	4.8e-64	95.56	PREDICTED: histone H2AX [Populus euphratica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046982	protein heterodimerization activity
GO:0003677	DNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus
GO:0000786	nucleosome

Vocabulary: **INTERPRO**
Term	Definition
IPR009072	Histone-fold
IPR007125	Histone_H2A/H2B/H3
IPR002119	Histone_H2A

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0008283	cell proliferation
biological_process	GO:0001510	RNA methylation
biological_process	GO:0006342	chromatin silencing
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0000790	nuclear chromatin
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG04g00730.1	Cp4.1LG04g00730.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002119	Histone H2A	PRINTS	PR00620	HISTONEH2A	coord: 44..59 score: 3.3E-51coord: 15..37 score: 3.3E-51coord: 73..87 score: 3.3E-51coord: 59..72 score: 3.3E-51coord: 101..119 score: 3.3
IPR002119	Histone H2A	SMART	SM00414	h2a4	coord: 4..124 score: 1.1
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 10..90 score: 4.0
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 8..122 score: 1.4
IPR009072	Histone-fold	unknown	SSF47113	Histone-fold	coord: 18..121 score: 1.11
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 2..136 score: 4.2E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG04g00730	Cucsa.163750	Cucumber (Gy14) v1	cgycpeB0450
Cp4.1LG04g00730	CmaCh10G011090	Cucurbita maxima (Rimu)	cmacpeB089
Cp4.1LG04g00730	CmoCh10G011920	Cucurbita moschata (Rifu)	cmocpeB065
Cp4.1LG04g00730	CmoCh11G011440	Cucurbita moschata (Rifu)	cmocpeB127
Cp4.1LG04g00730	Cla011310	Watermelon (97103) v1	cpewmB643
Cp4.1LG04g00730	Csa1G572950	Cucumber (Chinese Long) v2	cpecuB656
Cp4.1LG04g00730	MELO3C015363	Melon (DHL92) v3.5.1	cpemeB622
Cp4.1LG04g00730	ClCG03G016620	Watermelon (Charleston Gray)	cpewcgB600
Cp4.1LG04g00730	CSPI01G27050	Wild cucumber (PI 183967)	cpecpiB659
Cp4.1LG04g00730	Lsi06G001690	Bottle gourd (USVL1VR-Ls)	cpelsiB564
Cp4.1LG04g00730	MELO3C015363.2	Melon (DHL92) v3.6.1	cpemedB735
Cp4.1LG04g00730	CsaV3_1G039370	Cucumber (Chinese Long) v3	cpecucB0817
Cp4.1LG04g00730	Bhi02G001773	Wax gourd	cpewgoB0888
Cp4.1LG04g00730	CsGy1G026230	Cucumber (Gy14) v2	cgybcpeB129
Cp4.1LG04g00730	Carg21137	Silver-seed gourd	carcpeB0781

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG04g00730	Wax gourd	cpewgoB0904
Cp4.1LG04g00730	Cucurbita maxima (Rimu)	cmacpeB147