ClCG03G016620 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG03G016620
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Histone H2A
Location	CG_Chr03 : 31753298 .. 31754248 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTATAAATATCAAAACCCTCACTCTTTCTTTTCTCCCTCACTATCAAACTCATAGCCAAGGCTCCATCTCTCTCGAAAACCCCGAATTAGGGTTCTTGATTTTCCTCCCTTTTCTCTCAAATTCCATCACTTTTTTCCGATTCAACGATGAGTTCCACCGGCGGTTCCACCAAAGGAGGCAGAGGAAAGCCCAAAGCCACCAAATCCGTCTCCCGATCGCACAAAGCCGGCCTCCAGTTCCCCGTCGGCAGAATCGCAAGGTTTCTCAAGGCCGGAAAGTACGCTGAACGTGTCGGCGCTGGAGCTCCAGTCTACTTATCCGCCGTCCTCGAGTATCTCGCCGCTGAGGTAATAACAACATCCGTTCTCTTTCTTTTTTTCTAACTGATTCCGATGGAATTCTGTTTCGATTTTGTGCGATAGATCTCTAATTTTCTATCCATTGATTTCAATCGGAATTAGGTTTTGGAACTTGCTGGGAATGCTGCTAGAGACAACAAAAAGAATCGTATTGTACCGAGGCATATTCAGCTTGCAGTGAGAAACGATGAGGAATTGAGTAAGCTTTTGGGATCTGTAACCATCGCTAATGGAGGTGTTTTGCCCAATATTCACCAAACTCTTTTGCCTAAAAAAGTTGGTAAAGATAAGGGTGACATTGGTTCTGCATCACAGGAATTTTAGGGTTTTCTGTTTCTCTTTTTGGGGTTTGTTTCATTACTAGGGATGACAGTTCTTTCTGATATGTGAAATGGATGGGGGGTTTTGCTTCTGTGGCATTTGCTTCCTCTACTGTACCTTGTCATCTTGATTTTGTGTTTAGATGCATATATTTTATATCCATGTGAGGTTGTTGGTAGATTTGATTAAAAAATGATGATGATCAACTCCCTTTTACAGTTAGAAGTTAAATGAAATGGGTGTTTCTTGTTGAAAGAATTCAGTTTTGG

mRNA sequence

TCTATAAATATCAAAACCCTCACTCTTTCTTTTCTCCCTCACTATCAAACTCATAGCCAAGGCTCCATCTCTCTCGAAAACCCCGAATTAGGGTTCTTGATTTTCCTCCCTTTTCTCTCAAATTCCATCACTTTTTTCCGATTCAACGATGAGTTCCACCGGCGGTTCCACCAAAGGAGGCAGAGGAAAGCCCAAAGCCACCAAATCCGTCTCCCGATCGCACAAAGCCGGCCTCCAGTTCCCCGTCGGCAGAATCGCAAGGTTTCTCAAGGCCGGAAAGTACGCTGAACGTGTCGGCGCTGGAGCTCCAGTCTACTTATCCGCCGTCCTCGAGTATCTCGCCGCTGAGGTTTTGGAACTTGCTGGGAATGCTGCTAGAGACAACAAAAAGAATCGTATTGTACCGAGGCATATTCAGCTTGCAGTGAGAAACGATGAGGAATTGAGTAAGCTTTTGGGATCTGTAACCATCGCTAATGGAGGTGTTTTGCCCAATATTCACCAAACTCTTTTGCCTAAAAAAGTTGGTAAAGATAAGGGTGACATTGGTTCTGCATCACAGGAATTTTAGGGTTTTCTGTTTCTCTTTTTGGGGTTTGTTTCATTACTAGGGATGACAGTTCTTTCTGATATGTGAAATGGATGGGGGGTTTTGCTTCTGTGGCATTTGCTTCCTCTACTGTACCTTGTCATCTTGATTTTGTGTTTAGATGCATATATTTTATATCCATGTGAGGTTGTTGGTAGATTTGATTAAAAAATGATGATGATCAACTCCCTTTTACAGTTAGAAGTTAAATGAAATGGGTGTTTCTTGTTGAAAGAATTCAGTTTTGG

Coding sequence (CDS)

ATGAGTTCCACCGGCGGTTCCACCAAAGGAGGCAGAGGAAAGCCCAAAGCCACCAAATCCGTCTCCCGATCGCACAAAGCCGGCCTCCAGTTCCCCGTCGGCAGAATCGCAAGGTTTCTCAAGGCCGGAAAGTACGCTGAACGTGTCGGCGCTGGAGCTCCAGTCTACTTATCCGCCGTCCTCGAGTATCTCGCCGCTGAGGTTTTGGAACTTGCTGGGAATGCTGCTAGAGACAACAAAAAGAATCGTATTGTACCGAGGCATATTCAGCTTGCAGTGAGAAACGATGAGGAATTGAGTAAGCTTTTGGGATCTGTAACCATCGCTAATGGAGGTGTTTTGCCCAATATTCACCAAACTCTTTTGCCTAAAAAAGTTGGTAAAGATAAGGGTGACATTGGTTCTGCATCACAGGAATTTTAG

Protein sequence

MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKDKGDIGSASQEF

Homology

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BLAST of ClCG03G016620 vs. Swiss-Prot
Match: H2AXB_ARATH (Probable histone H2AXb OS=Arabidopsis thaliana GN=At1g54690 PE=1 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 1.1e-66
Identity = 130/135 (96.30%), Postives = 130/135 (96.30%), Query Frame = 1


Query: 6   GSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLA 65
           G+TKGGRGKPKATKSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLA
Sbjct: 8   GTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLA 67

Query: 66  AEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 125
           AEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLP K
Sbjct: 68  AEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSK 127

Query: 126 VGKDKGDIGSASQEF 141
           VGK+KGDIGSASQEF
Sbjct: 128 VGKNKGDIGSASQEF 142

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BLAST of ClCG03G016620 vs. Swiss-Prot
Match: H2AXA_ARATH (Probable histone H2AXa OS=Arabidopsis thaliana GN=At1g08880 PE=1 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 1.8e-66
Identity = 132/141 (93.62%), Postives = 133/141 (94.33%), Query Frame = 1


Query: 3   STG---GSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSA 62
           STG   G+TKGGRGKPKATKSVSRS KAGLQFPVGRIARFLK+GKYAERVGAGAPVYLSA
Sbjct: 2   STGAGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSA 61

Query: 63  VLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQ 122
           VLEYLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQ
Sbjct: 62  VLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQ 121

Query: 123 TLLPKKVGKDKGDIGSASQEF 141
           TLLP KVGK+KGDIGSASQEF
Sbjct: 122 TLLPSKVGKNKGDIGSASQEF 142

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BLAST of ClCG03G016620 vs. Swiss-Prot
Match: H2AX_CICAR (Histone H2AX OS=Cicer arietinum GN=HIS2A PE=2 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 3.1e-66
Identity = 132/140 (94.29%), Postives = 133/140 (95.00%), Query Frame = 1


Query: 1   MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60
           MSST  +TKGGRGKPKA+KSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV
Sbjct: 1   MSSTA-TTKGGRGKPKASKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120
           LEYLAAEVLELAGNAARDNK NRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT
Sbjct: 61  LEYLAAEVLELAGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 121 LLPKKVGKDKGDIGSASQEF 141
           LLPKKVGK KG+IGSASQEF
Sbjct: 121 LLPKKVGKGKGEIGSASQEF 139

[Close]

BLAST of ClCG03G016620 vs. Swiss-Prot
Match: H2AX_PICAB (Histone H2AX OS=Picea abies PE=2 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 2.2e-64
Identity = 128/140 (91.43%), Postives = 131/140 (93.57%), Query Frame = 1


Query: 1   MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60
           MSS+G   KGGRGK K+TKSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AV
Sbjct: 1   MSSSGA--KGGRGKAKSTKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120
           LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG+VTIANGGVLPNIHQ 
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGAVTIANGGVLPNIHQV 120

Query: 121 LLPKKVGKDKGDIGSASQEF 141
           LLPKK GKDKG+IGSASQEF
Sbjct: 121 LLPKKSGKDKGEIGSASQEF 138

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BLAST of ClCG03G016620 vs. Swiss-Prot
Match: H2AXB_ORYSI (Probable histone H2AXb OS=Oryza sativa subsp. indica GN=OsI_037312 PE=3 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 1.2e-62
Identity = 126/140 (90.00%), Postives = 128/140 (91.43%), Query Frame = 1


Query: 1   MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60
           MSS GG   GGRGK K +KSVSRS KAGLQFPVGRIAR+LKAGKYAERVGAGAPVYLSAV
Sbjct: 1   MSSAGGG--GGRGKSKGSKSVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120
           LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELS+LLG+VTIA GGVLPNIHQT
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQT 120

Query: 121 LLPKKVGKDKGDIGSASQEF 141
           LLPKK GKDK DIGSASQEF
Sbjct: 121 LLPKKGGKDKADIGSASQEF 138

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BLAST of ClCG03G016620 vs. TrEMBL
Match: A0A0A0LW51_CUCSA (Histone H2A OS=Cucumis sativus GN=Csa_1G572950 PE=3 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 1.1e-70
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 1


Query: 1   MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60
           MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV
Sbjct: 1   MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120
           LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 121 LLPKKVGKDKGDIGSASQEF 141
           LLPKKVGKDKGDIGSASQEF
Sbjct: 121 LLPKKVGKDKGDIGSASQEF 140

[Close]

BLAST of ClCG03G016620 vs. TrEMBL
Match: V4TA53_9ROSI (Histone H2A OS=Citrus clementina GN=CICLE_v10002804mg PE=3 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 2.1e-69
Identity = 138/140 (98.57%), Postives = 139/140 (99.29%), Query Frame = 1


Query: 1   MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60
           MSSTGGSTKGGRGKPKA+KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV
Sbjct: 1   MSSTGGSTKGGRGKPKASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120
           LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 121 LLPKKVGKDKGDIGSASQEF 141
           LLPKKVGK KGDIGSASQEF
Sbjct: 121 LLPKKVGKGKGDIGSASQEF 140

[Close]

BLAST of ClCG03G016620 vs. TrEMBL
Match: A0A0B0NVE5_GOSAR (Histone H2A OS=Gossypium arboreum GN=F383_22140 PE=3 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 1.0e-68
Identity = 136/140 (97.14%), Postives = 139/140 (99.29%), Query Frame = 1


Query: 1   MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60
           MSSTGGSTKGGRGKPKA+KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV
Sbjct: 1   MSSTGGSTKGGRGKPKASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120
           LEYLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT
Sbjct: 61  LEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 121 LLPKKVGKDKGDIGSASQEF 141
           LLPKK+GKDKG+IGSASQEF
Sbjct: 121 LLPKKMGKDKGEIGSASQEF 140

[Close]

BLAST of ClCG03G016620 vs. TrEMBL
Match: V7BM87_PHAVU (Histone H2A OS=Phaseolus vulgaris GN=PHAVU_006G095800g PE=3 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 5.2e-68
Identity = 136/140 (97.14%), Postives = 138/140 (98.57%), Query Frame = 1


Query: 1   MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60
           MSSTGGSTKGGRGKPKA+KSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV
Sbjct: 1   MSSTGGSTKGGRGKPKASKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120
           LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 121 LLPKKVGKDKGDIGSASQEF 141
           LLPKKVGK KG+IGSASQEF
Sbjct: 121 LLPKKVGKGKGEIGSASQEF 140

[Close]

BLAST of ClCG03G016620 vs. TrEMBL
Match: C6SV65_SOYBN (Histone H2A OS=Glycine max GN=GLYMA_19G239200 PE=2 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 5.2e-68
Identity = 136/140 (97.14%), Postives = 138/140 (98.57%), Query Frame = 1


Query: 1   MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60
           MSSTGGSTKGGRGKPKA+KSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV
Sbjct: 1   MSSTGGSTKGGRGKPKASKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120
           LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 121 LLPKKVGKDKGDIGSASQEF 141
           LLPKKVGK KG+IGSASQEF
Sbjct: 121 LLPKKVGKGKGEIGSASQEF 140

[Close]

BLAST of ClCG03G016620 vs. TAIR10
Match: AT1G54690.1 (AT1G54690.1 gamma histone variant H2AX)

HSP 1 Score: 253.8 bits (647), Expect = 6.0e-68
Identity = 130/135 (96.30%), Postives = 130/135 (96.30%), Query Frame = 1


Query: 6   GSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLA 65
           G+TKGGRGKPKATKSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLA
Sbjct: 8   GTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLA 67

Query: 66  AEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 125
           AEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLP K
Sbjct: 68  AEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSK 127

Query: 126 VGKDKGDIGSASQEF 141
           VGK+KGDIGSASQEF
Sbjct: 128 VGKNKGDIGSASQEF 142

[Close]

BLAST of ClCG03G016620 vs. TAIR10
Match: AT1G08880.1 (AT1G08880.1 Histone superfamily protein)

HSP 1 Score: 253.1 bits (645), Expect = 1.0e-67
Identity = 132/141 (93.62%), Postives = 133/141 (94.33%), Query Frame = 1


Query: 3   STG---GSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSA 62
           STG   G+TKGGRGKPKATKSVSRS KAGLQFPVGRIARFLK+GKYAERVGAGAPVYLSA
Sbjct: 2   STGAGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSA 61

Query: 63  VLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQ 122
           VLEYLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQ
Sbjct: 62  VLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQ 121

Query: 123 TLLPKKVGKDKGDIGSASQEF 141
           TLLP KVGK+KGDIGSASQEF
Sbjct: 122 TLLPSKVGKNKGDIGSASQEF 142

[Close]

BLAST of ClCG03G016620 vs. TAIR10
Match: AT4G27230.1 (AT4G27230.1 histone H2A 2)

HSP 1 Score: 201.1 bits (510), Expect = 4.6e-52
Identity = 106/124 (85.48%), Postives = 106/124 (85.48%), Query Frame = 1


Query: 11  GRGKP----KATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 70
           GRGK      A KS SRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVLEYLAA
Sbjct: 3   GRGKQLGSGAAKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAA 62

Query: 71  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKV 130
           EVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGV+PNIH  LLPKK 
Sbjct: 63  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKA 122

[Close]

BLAST of ClCG03G016620 vs. TAIR10
Match: AT5G54640.1 (AT5G54640.1 Histone superfamily protein)

HSP 1 Score: 200.7 bits (509), Expect = 6.1e-52
Identity = 106/125 (84.80%), Postives = 106/125 (84.80%), Query Frame = 1


Query: 6   GSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLA 65
           G T G  G  KAT   SRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVLEYLA
Sbjct: 5   GKTLGSGGAKKAT---SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLA 64

Query: 66  AEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 125
           AEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGV+PNIH  LLPKK
Sbjct: 65  AEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKK 124

Query: 126 VGKDK 131
            G  K
Sbjct: 125 AGASK 126

[Close]

BLAST of ClCG03G016620 vs. TAIR10
Match: AT1G51060.1 (AT1G51060.1 histone H2A 10)

HSP 1 Score: 196.8 bits (499), Expect = 8.8e-51
Identity = 103/124 (83.06%), Postives = 105/124 (84.68%), Query Frame = 1


Query: 11  GRGKP----KATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 70
           GRGK      A K+ +RS KAGLQFPVGRIARFLK GKYAERVGAGAPVYL+AVLEYLAA
Sbjct: 3   GRGKTLGSGSAKKATTRSSKAGLQFPVGRIARFLKKGKYAERVGAGAPVYLAAVLEYLAA 62

Query: 71  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKV 130
           EVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGV+PNIH  LLPKK 
Sbjct: 63  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT 122

[Close]

BLAST of ClCG03G016620 vs. NCBI nr
Match: gi|449435726|ref|XP_004135645.1| (PREDICTED: histone H2AX [Cucumis sativus])

HSP 1 Score: 273.9 bits (699), Expect = 1.6e-70
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 1


Query: 1   MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60
           MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV
Sbjct: 1   MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120
           LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 121 LLPKKVGKDKGDIGSASQEF 141
           LLPKKVGKDKGDIGSASQEF
Sbjct: 121 LLPKKVGKDKGDIGSASQEF 140

[Close]

BLAST of ClCG03G016620 vs. NCBI nr
Match: gi|567881355|ref|XP_006433236.1| (hypothetical protein CICLE_v10002804mg [Citrus clementina])

HSP 1 Score: 269.6 bits (688), Expect = 3.0e-69
Identity = 138/140 (98.57%), Postives = 139/140 (99.29%), Query Frame = 1


Query: 1   MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60
           MSSTGGSTKGGRGKPKA+KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV
Sbjct: 1   MSSTGGSTKGGRGKPKASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120
           LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 121 LLPKKVGKDKGDIGSASQEF 141
           LLPKKVGK KGDIGSASQEF
Sbjct: 121 LLPKKVGKGKGDIGSASQEF 140

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BLAST of ClCG03G016620 vs. NCBI nr
Match: gi|728836341|gb|KHG15784.1| (hypothetical protein F383_22140 [Gossypium arboreum])

HSP 1 Score: 267.3 bits (682), Expect = 1.5e-68
Identity = 136/140 (97.14%), Postives = 139/140 (99.29%), Query Frame = 1


Query: 1   MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60
           MSSTGGSTKGGRGKPKA+KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV
Sbjct: 1   MSSTGGSTKGGRGKPKASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120
           LEYLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT
Sbjct: 61  LEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 121 LLPKKVGKDKGDIGSASQEF 141
           LLPKK+GKDKG+IGSASQEF
Sbjct: 121 LLPKKMGKDKGEIGSASQEF 140

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BLAST of ClCG03G016620 vs. NCBI nr
Match: gi|351724209|ref|NP_001235770.1| (uncharacterized protein LOC100305465 [Glycine max])

HSP 1 Score: 265.0 bits (676), Expect = 7.4e-68
Identity = 136/140 (97.14%), Postives = 138/140 (98.57%), Query Frame = 1


Query: 1   MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60
           MSSTGGSTKGGRGKPKA+KSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV
Sbjct: 1   MSSTGGSTKGGRGKPKASKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120
           LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 121 LLPKKVGKDKGDIGSASQEF 141
           LLPKKVGK KG+IGSASQEF
Sbjct: 121 LLPKKVGKGKGEIGSASQEF 140

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BLAST of ClCG03G016620 vs. NCBI nr
Match: gi|823196647|ref|XP_012492997.1| (PREDICTED: histone H2AX-like [Gossypium raimondii])

HSP 1 Score: 264.2 bits (674), Expect = 1.3e-67
Identity = 134/140 (95.71%), Postives = 138/140 (98.57%), Query Frame = 1


Query: 1   MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60
           MSSTGGS KGGRGKPK++K+VSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV
Sbjct: 1   MSSTGGSAKGGRGKPKSSKAVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120
           LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 121 LLPKKVGKDKGDIGSASQEF 141
           LLPKK+GK KGDIGSASQEF
Sbjct: 121 LLPKKMGKGKGDIGSASQEF 140

The following BLAST results are available for this feature:

BLAST of ClCG03G016620 vs. Swiss-Prot


Match Name	E-value	Identity	Description
H2AXB_ARATH	1.1e-66	96.30	Probable histone H2AXb OS=Arabidopsis thaliana GN=At1g54690 PE=1 SV=1	[more]
H2AXA_ARATH	1.8e-66	93.62	Probable histone H2AXa OS=Arabidopsis thaliana GN=At1g08880 PE=1 SV=1	[more]
H2AX_CICAR	3.1e-66	94.29	Histone H2AX OS=Cicer arietinum GN=HIS2A PE=2 SV=1	[more]
H2AX_PICAB	2.2e-64	91.43	Histone H2AX OS=Picea abies PE=2 SV=1	[more]
H2AXB_ORYSI	1.2e-62	90.00	Probable histone H2AXb OS=Oryza sativa subsp. indica GN=OsI_037312 PE=3 SV=1	[more]

BLAST of ClCG03G016620 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LW51_CUCSA	1.1e-70	100.00	Histone H2A OS=Cucumis sativus GN=Csa_1G572950 PE=3 SV=1	[more]
V4TA53_9ROSI	2.1e-69	98.57	Histone H2A OS=Citrus clementina GN=CICLE_v10002804mg PE=3 SV=1	[more]
A0A0B0NVE5_GOSAR	1.0e-68	97.14	Histone H2A OS=Gossypium arboreum GN=F383_22140 PE=3 SV=1	[more]
V7BM87_PHAVU	5.2e-68	97.14	Histone H2A OS=Phaseolus vulgaris GN=PHAVU_006G095800g PE=3 SV=1	[more]
C6SV65_SOYBN	5.2e-68	97.14	Histone H2A OS=Glycine max GN=GLYMA_19G239200 PE=2 SV=1	[more]

BLAST of ClCG03G016620 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G54690.1	6.0e-68	96.30	gamma histone variant H2AX	[more]
AT1G08880.1	1.0e-67	93.62	Histone superfamily protein	[more]
AT4G27230.1	4.6e-52	85.48	histone H2A 2	[more]
AT5G54640.1	6.1e-52	84.80	Histone superfamily protein	[more]
AT1G51060.1	8.8e-51	83.06	histone H2A 10	[more]

BLAST of ClCG03G016620 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449435726\|ref\|XP_004135645.1\|	1.6e-70	100.00	PREDICTED: histone H2AX [Cucumis sativus]	[more]
gi\|567881355\|ref\|XP_006433236.1\|	3.0e-69	98.57	hypothetical protein CICLE_v10002804mg [Citrus clementina]	[more]
gi\|728836341\|gb\|KHG15784.1\|	1.5e-68	97.14	hypothetical protein F383_22140 [Gossypium arboreum]	[more]
gi\|351724209\|ref\|NP_001235770.1\|	7.4e-68	97.14	uncharacterized protein LOC100305465 [Glycine max]	[more]
gi\|823196647\|ref\|XP_012492997.1\|	1.3e-67	95.71	PREDICTED: histone H2AX-like [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002119	Histone_H2A
IPR007125	Histone_H2A/H2B/H3
IPR009072	Histone-fold

Vocabulary: **Cellular Component**
Term	Definition
GO:0000786	nucleosome
GO:0005634	nucleus

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0046982	protein heterodimerization activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008283	cell proliferation
biological_process	GO:0001510	RNA methylation
biological_process	GO:0008150	biological_process
biological_process	GO:0006342	chromatin silencing
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
cellular_component	GO:0000790	nuclear chromatin
cellular_component	GO:0005694	chromosome
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG03G016620.1	ClCG03G016620.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002119	Histone H2A	PRINTS	PR00620	HISTONEH2A	coord: 48..63 score: 5.8E-52coord: 77..91 score: 5.8E-52coord: 63..76 score: 5.8E-52coord: 19..41 score: 5.8E-52coord: 105..123 score: 5.8
IPR002119	Histone H2A	SMART	SM00414	h2a4	coord: 8..128 score: 1.0
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 12..94 score: 1.6
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 12..126 score: 2.9
IPR009072	Histone-fold	unknown	SSF47113	Histone-fold	coord: 22..125 score: 4.64
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 5..140 score: 3.7E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG03G016620	Csa1G572950	Cucumber (Chinese Long) v2	cuwcgB046
ClCG03G016620	MELO3C015363	Melon (DHL92) v3.5.1	mewcgB245
ClCG03G016620	Cla011310	Watermelon (97103) v1	wcgwmB224
ClCG03G016620	Cla97C03G066930	Watermelon (97103) v2	wcgwmbB186
ClCG03G016620	Bhi02G001773	Wax gourd	wcgwgoB365
ClCG03G016620	CSPI01G27050	Wild cucumber (PI 183967)	cpiwcgB049
ClCG03G016620	Cucsa.163750	Cucumber (Gy14) v1	cgywcgB285
ClCG03G016620	CmaCh10G011090	Cucurbita maxima (Rimu)	cmawcgB056
ClCG03G016620	CmoCh11G011440	Cucurbita moschata (Rifu)	cmowcgB097
ClCG03G016620	CmoCh10G011920	Cucurbita moschata (Rifu)	cmowcgB048
ClCG03G016620	Lsi06G001690	Bottle gourd (USVL1VR-Ls)	lsiwcgB364
ClCG03G016620	Cp4.1LG04g00730	Cucurbita pepo (Zucchini)	cpewcgB600
ClCG03G016620	CsGy1G026230	Cucumber (Gy14) v2	cgybwcgB043
ClCG03G016620	MELO3C015363.2	Melon (DHL92) v3.6.1	medwcgB237
ClCG03G016620	Carg21137	Silver-seed gourd	carwcgB0535
ClCG03G016620	CsaV3_1G039370	Cucumber (Chinese Long) v3	cucwcgB050

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG03G016620	Cucurbita maxima (Rimu)	cmawcgB107