Carg21137 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg21137
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Histone H2A
Location	Cucurbita_argyrosperma_scaffold_207 : 3431 .. 4747 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATACCAAAATCATCACTCTTGCTTTCACCTTCAAGAAGCCGATACTCTCAGAAGCCACAGTTTAGGGTTTTTCGATTTTTCATCTTTGTCAAATTTCATCAGTTTCTTCCGATTCAACAATGAGTTCCACCAAGGGAGGTAGAGGAAAGCCCAAAGCCACCAAATCGGTCACACGATCGCACAAAGCCGGCCTCCAGTTCCCCGTCGGTAGAATCGCGAGGTTTTTAAAGGCCGGGAAGTACGCCGAGCGAGTCGGTGCTGGAGCCCCGGTGTATTTGTCTGCCGTTCTTGAGTATCTTGCCGCTGAGGTGATCGGATCCTCTGTTCTTTTGCTTTTTTAATTTGTAGTGGTTTTGATATAATGCTGTCTTTGATATAGAGTGTGTTCATTTCGACTAGTTTTTCAAGTGCTTTAGTAAGGCAGAAATTGGTTTTCTTCTTTAAAATTAGTGTAACCAAGTAATAATCATTTTAGGAACAATCATTTTGGCTTAGAATCTAAAACGATTGATTAAAACAGCACTTCAAGAATCATCTTGTGGTGATTTAACACTTGTAGTTGTAGTATAATCAAGAAAATGTATCTGAGAACAGATTTTAATGGATCGAACTTGGAATTTTGTTTTTGATCTTGTATTTGTCGATTGGAATTAGGTATTGGAGCTTGCTGGGAATGCAGCAAGAGATAACAAGAAGAATCGTATTGTGCCAAGGCATATTCAGCTTGCCGTAAGGAACGATGAGGAGTTGAGCAAGCTTTTGGGGTGCGTAACCATTGCAAATGGAGGAGTTTTGCCCAACATTCACCAAACCCTTTTGCCTAAAAAGGTTGGTAAAGACAAGGGTGATATTGGGTCTGCATCGCAAGAGTTCTAGGGATTTAGGTTGTATTTTGGGGATGATTTTGGTTCTTTTCCAGAATGACAGAAGTATGATGTTGAAATGAATGGGGTTTGGATCTGTTCCATTTGCTGGGTCATCTTGCTTAGTTTTGCTTAGATGCATATGGTTGGTCTGGATCCATGTAATGTAGTTATCAAGAATGATGATGATGATACTCCCTTCTAGATTTAGAAGTATGAAATGTGTATTTTCTTGTTCAAAGCACTCAATTTTGTGTTCTTGATTATTTCTGCTTAATAGTTGTTTTGATCTGAAATGATTTTAGACAGAAACTTGTTTAATTTCATTTAGGACCTTGAATCCTCTTCTTTATGCATCCTGATAAACGAACCTGAGCCGTGAAAGGGTGGTTCTCAGACCTCAGGTTCACAATTGAACTTGGTAGCCACGAATTAGCCCAGATCCTTAACCCA

mRNA sequence

TATACCAAAATCATCACTCTTGCTTTCACCTTCAAGAAGCCGATACTCTCAGAAGCCACAGTTTAGGGTTTTTCGATTTTTCATCTTTGTCAAATTTCATCAGTTTCTTCCGATTCAACAATGAGTTCCACCAAGGGAGGTAGAGGAAAGCCCAAAGCCACCAAATCGGTCACACGATCGCACAAAGCCGGCCTCCAGTTCCCCGTCGGTAGAATCGCGAGGTTTTTAAAGGCCGGGAAGTACGCCGAGCGAGTCGGTGCTGGAGCCCCGGTGTATTTGTCTGCCGTTCTTGAGTATCTTGCCGCTGAGGTATTGGAGCTTGCTGGGAATGCAGCAAGAGATAACAAGAAGAATCGTATTGTGCCAAGGCATATTCAGCTTGCCGTAAGGAACGATGAGGAGTTGAGCAAGCTTTTGGGGTGCGTAACCATTGCAAATGGAGGAGTTTTGCCCAACATTCACCAAACCCTTTTGCCTAAAAAGGTTGGTAAAGACAAGGGTGATATTGGGTCTGCATCGCAAGAGTTCTAGGGATTTAGGTTGTATTTTGGGGATGATTTTGGTTCTTTTCCAGAATGACAGAAGTATGATGTTGAAATGAATGGGGTTTGGATCTGTTCCATTTGCTGGGTCATCTTGCTTAGTTTTGCTTAGATGCATATGGTTGGTCTGGATCCATGTAATGTAGTTATCAAGAATGATGATGATGATACTCCCTTCTAGATTTAGAAGTATGAAATGTGTATTTTCTTGTTCAAAGCACTCAATTTTGTGTTCTTGATTATTTCTGCTTAATAGTTGTTTTGATCTGAAATGATTTTAGACAGAAACTTGTTTAATTTCATTTAGGACCTTGAATCCTCTTCTTTATGCATCCTGATAAACGAACCTGAGCCGTGAAAGGGTGGTTCTCAGACCTCAGGTTCACAATTGAACTTGGTAGCCACGAATTAGCCCAGATCCTTAACCCA

Coding sequence (CDS)

ATGAGTTCCACCAAGGGAGGTAGAGGAAAGCCCAAAGCCACCAAATCGGTCACACGATCGCACAAAGCCGGCCTCCAGTTCCCCGTCGGTAGAATCGCGAGGTTTTTAAAGGCCGGGAAGTACGCCGAGCGAGTCGGTGCTGGAGCCCCGGTGTATTTGTCTGCCGTTCTTGAGTATCTTGCCGCTGAGGTATTGGAGCTTGCTGGGAATGCAGCAAGAGATAACAAGAAGAATCGTATTGTGCCAAGGCATATTCAGCTTGCCGTAAGGAACGATGAGGAGTTGAGCAAGCTTTTGGGGTGCGTAACCATTGCAAATGGAGGAGTTTTGCCCAACATTCACCAAACCCTTTTGCCTAAAAAGGTTGGTAAAGACAAGGGTGATATTGGGTCTGCATCGCAAGAGTTCTAG

Protein sequence

MSSTKGGRGKPKATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGCVTIANGGVLPNIHQTLLPKKVGKDKGDIGSASQEF

Homology

[Close]

BLAST of Carg21137 vs. NCBI nr
Match: XP_022933937.1 (probable histone H2AXb [Cucurbita moschata] >XP_022971521.1 probable histone H2AXb [Cucurbita maxima] >XP_023530290.1 probable histone H2AXb [Cucurbita pepo subsp. pepo])

HSP 1 Score: 265.8 bits (678), Expect = 8.2e-68
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MSSTKGGRGKPKATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYL 60
           MSSTKGGRGKPKATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYL
Sbjct: 1   MSSTKGGRGKPKATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGCVTIANGGVLPNIHQTLLPK 120
           AAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGCVTIANGGVLPNIHQTLLPK
Sbjct: 61  AAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGCVTIANGGVLPNIHQTLLPK 120

Query: 121 KVGKDKGDIGSASQEF 137
           KVGKDKGDIGSASQEF
Sbjct: 121 KVGKDKGDIGSASQEF 136

[Close]

BLAST of Carg21137 vs. NCBI nr
Match: XP_022961601.1 (probable histone H2AXb [Cucurbita moschata] >XP_023515960.1 probable histone H2AXb [Cucurbita pepo subsp. pepo])

HSP 1 Score: 260.4 bits (664), Expect = 3.5e-66
Identity = 134/136 (98.53%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 1   MSSTKGGRGKPKATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYL 60
           MSSTKGGRGKP+ATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYL
Sbjct: 1   MSSTKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGCVTIANGGVLPNIHQTLLPK 120
           AAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQTLLPK
Sbjct: 61  AAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPK 120

Query: 121 KVGKDKGDIGSASQEF 137
           KVGKDKGDIGSASQEF
Sbjct: 121 KVGKDKGDIGSASQEF 136

[Close]

BLAST of Carg21137 vs. NCBI nr
Match: XP_004135645.1 (PREDICTED: histone H2AX [Cucumis sativus] >XP_008450716.1 PREDICTED: histone H2AX [Cucumis melo] >KGN66125.1 Histone H2A [Cucumis sativus])

HSP 1 Score: 256.9 bits (655), Expect = 3.8e-65
Identity = 132/134 (98.51%), Postives = 133/134 (99.25%), Query Frame = 0


Query: 3   STKGGRGKPKATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 62
           STKGGRGKPKATKSV+RSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA
Sbjct: 7   STKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 66

Query: 63  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGCVTIANGGVLPNIHQTLLPKKV 122
           EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQTLLPKKV
Sbjct: 67  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKV 126

Query: 123 GKDKGDIGSASQEF 137
           GKDKGDIGSASQEF
Sbjct: 127 GKDKGDIGSASQEF 140

[Close]

BLAST of Carg21137 vs. NCBI nr
Match: XP_022154594.1 (probable histone H2AXb [Momordica charantia])

HSP 1 Score: 256.9 bits (655), Expect = 3.8e-65
Identity = 132/134 (98.51%), Postives = 133/134 (99.25%), Query Frame = 0


Query: 3   STKGGRGKPKATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 62
           STKGGRGKPKATKSV+RSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA
Sbjct: 7   STKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 66

Query: 63  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGCVTIANGGVLPNIHQTLLPKKV 122
           EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQTLLPKKV
Sbjct: 67  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKV 126

Query: 123 GKDKGDIGSASQEF 137
           GKDKGDIGSASQEF
Sbjct: 127 GKDKGDIGSASQEF 140

[Close]

BLAST of Carg21137 vs. NCBI nr
Match: XP_022968814.1 (probable histone H2AXb [Cucurbita maxima])

HSP 1 Score: 256.9 bits (655), Expect = 3.8e-65
Identity = 133/136 (97.79%), Postives = 134/136 (98.53%), Query Frame = 0


Query: 1   MSSTKGGRGKPKATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYL 60
           MSSTKGGRGKP+ATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYL
Sbjct: 1   MSSTKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGCVTIANGGVLPNIHQTLLPK 120
           AAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQTLLPK
Sbjct: 61  AAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPK 120

Query: 121 KVGKDKGDIGSASQEF 137
           KVGKDK DIGSASQEF
Sbjct: 121 KVGKDKVDIGSASQEF 136

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BLAST of Carg21137 vs. TAIR10
Match: AT1G54690.1 (gamma histone variant H2AX)

HSP 1 Score: 246.1 bits (627), Expect = 1.2e-65
Identity = 127/134 (94.78%), Postives = 130/134 (97.01%), Query Frame = 0


Query: 3   STKGGRGKPKATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 62
           +TKGGRGKPKATKSV+RS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA
Sbjct: 9   TTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 68

Query: 63  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGCVTIANGGVLPNIHQTLLPKKV 122
           EVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQTLLP KV
Sbjct: 69  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKV 128

Query: 123 GKDKGDIGSASQEF 137
           GK+KGDIGSASQEF
Sbjct: 129 GKNKGDIGSASQEF 142

[Close]

BLAST of Carg21137 vs. TAIR10
Match: AT1G08880.1 (Histone superfamily protein)

HSP 1 Score: 245.0 bits (624), Expect = 2.7e-65
Identity = 126/134 (94.03%), Postives = 130/134 (97.01%), Query Frame = 0


Query: 3   STKGGRGKPKATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 62
           +TKGGRGKPKATKSV+RS KAGLQFPVGRIARFLK+GKYAERVGAGAPVYLSAVLEYLAA
Sbjct: 9   TTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSAVLEYLAA 68

Query: 63  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGCVTIANGGVLPNIHQTLLPKKV 122
           EVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQTLLP KV
Sbjct: 69  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKV 128

Query: 123 GKDKGDIGSASQEF 137
           GK+KGDIGSASQEF
Sbjct: 129 GKNKGDIGSASQEF 142

[Close]

BLAST of Carg21137 vs. TAIR10
Match: AT4G27230.1 (histone H2A 2)

HSP 1 Score: 196.8 bits (499), Expect = 8.5e-51
Identity = 105/124 (84.68%), Postives = 108/124 (87.10%), Query Frame = 0


Query: 7   GRGKP----KATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 66
           GRGK      A KS +RS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVLEYLAA
Sbjct: 3   GRGKQLGSGAAKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAA 62

Query: 67  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGCVTIANGGVLPNIHQTLLPKKV 126
           EVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGV+PNIH  LLPKK 
Sbjct: 63  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKA 122

[Close]

BLAST of Carg21137 vs. TAIR10
Match: AT1G51060.1 (histone H2A 10)

HSP 1 Score: 195.3 bits (495), Expect = 2.5e-50
Identity = 104/124 (83.87%), Postives = 107/124 (86.29%), Query Frame = 0


Query: 7   GRGKP----KATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 66
           GRGK      A K+ TRS KAGLQFPVGRIARFLK GKYAERVGAGAPVYL+AVLEYLAA
Sbjct: 3   GRGKTLGSGSAKKATTRSSKAGLQFPVGRIARFLKKGKYAERVGAGAPVYLAAVLEYLAA 62

Query: 67  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGCVTIANGGVLPNIHQTLLPKKV 126
           EVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGV+PNIH  LLPKK 
Sbjct: 63  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT 122

[Close]

BLAST of Carg21137 vs. TAIR10
Match: AT5G54640.1 (Histone superfamily protein)

HSP 1 Score: 194.9 bits (494), Expect = 3.2e-50
Identity = 104/124 (83.87%), Postives = 108/124 (87.10%), Query Frame = 0


Query: 7   GRGKP----KATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 66
           GRGK      A K+ +RS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVLEYLAA
Sbjct: 3   GRGKTLGSGGAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAA 62

Query: 67  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGCVTIANGGVLPNIHQTLLPKKV 126
           EVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGV+PNIH  LLPKK 
Sbjct: 63  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKA 122

[Close]

BLAST of Carg21137 vs. Swiss-Prot
Match: sp|Q9S9K7|H2AXB_ARATH (Probable histone H2AXb OS=Arabidopsis thaliana OX=3702 GN=At1g54690 PE=1 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 2.2e-64
Identity = 127/134 (94.78%), Postives = 130/134 (97.01%), Query Frame = 0


Query: 3   STKGGRGKPKATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 62
           +TKGGRGKPKATKSV+RS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA
Sbjct: 9   TTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 68

Query: 63  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGCVTIANGGVLPNIHQTLLPKKV 122
           EVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQTLLP KV
Sbjct: 69  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKV 128

Query: 123 GKDKGDIGSASQEF 137
           GK+KGDIGSASQEF
Sbjct: 129 GKNKGDIGSASQEF 142

[Close]

BLAST of Carg21137 vs. Swiss-Prot
Match: sp|O04848|H2AXA_ARATH (Probable histone H2AXa OS=Arabidopsis thaliana OX=3702 GN=At1g08880 PE=1 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 4.9e-64
Identity = 126/134 (94.03%), Postives = 130/134 (97.01%), Query Frame = 0


Query: 3   STKGGRGKPKATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 62
           +TKGGRGKPKATKSV+RS KAGLQFPVGRIARFLK+GKYAERVGAGAPVYLSAVLEYLAA
Sbjct: 9   TTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSAVLEYLAA 68

Query: 63  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGCVTIANGGVLPNIHQTLLPKKV 122
           EVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQTLLP KV
Sbjct: 69  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKV 128

Query: 123 GKDKGDIGSASQEF 137
           GK+KGDIGSASQEF
Sbjct: 129 GKNKGDIGSASQEF 142

[Close]

BLAST of Carg21137 vs. Swiss-Prot
Match: sp|O65759|H2AX_CICAR (Histone H2AX OS=Cicer arietinum OX=3827 GN=HIS2A PE=2 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 6.4e-64
Identity = 126/135 (93.33%), Postives = 131/135 (97.04%), Query Frame = 0


Query: 2   SSTKGGRGKPKATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLA 61
           ++TKGGRGKPKA+KSV+RS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLA
Sbjct: 5   ATTKGGRGKPKASKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLA 64

Query: 62  AEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGCVTIANGGVLPNIHQTLLPKK 121
           AEVLELAGNAARDNK NRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQTLLPKK
Sbjct: 65  AEVLELAGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 124

Query: 122 VGKDKGDIGSASQEF 137
           VGK KG+IGSASQEF
Sbjct: 125 VGKGKGEIGSASQEF 139

[Close]

BLAST of Carg21137 vs. Swiss-Prot
Match: sp|P35063|H2AX_PICAB (Histone H2AX OS=Picea abies OX=3329 PE=2 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 9.3e-63
Identity = 124/135 (91.85%), Postives = 128/135 (94.81%), Query Frame = 0


Query: 2   SSTKGGRGKPKATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLA 61
           S  KGGRGK K+TKSV+RS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVLEYLA
Sbjct: 4   SGAKGGRGKAKSTKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLA 63

Query: 62  AEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGCVTIANGGVLPNIHQTLLPKK 121
           AEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQ LLPKK
Sbjct: 64  AEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGAVTIANGGVLPNIHQVLLPKK 123

Query: 122 VGKDKGDIGSASQEF 137
            GKDKG+IGSASQEF
Sbjct: 124 SGKDKGEIGSASQEF 138

[Close]

BLAST of Carg21137 vs. Swiss-Prot
Match: sp|A2XLI0|H2AXA_ORYSI (Probable histone H2AXa OS=Oryza sativa subsp. indica OX=39946 GN=OsI_012923 PE=3 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 9.9e-57
Identity = 120/138 (86.96%), Postives = 126/138 (91.30%), Query Frame = 0


Query: 1   MSSTK--GGRGKPKATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE 60
           MSS++  GGRGK K TK+V+RS KAGLQFPVGRIAR+LKAGKYAERVGAGAPVYLSAVLE
Sbjct: 1   MSSSQGGGGRGKAKTTKAVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLE 60

Query: 61  YLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGCVTIANGGVLPNIHQTLL 120
           YLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELS+LLG VTIA GGVLPNI Q LL
Sbjct: 61  YLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGTVTIAAGGVLPNIQQVLL 120

Query: 121 PKKVGKDKGDIGSASQEF 137
           PKK G  KGDIGSASQEF
Sbjct: 121 PKK-GGGKGDIGSASQEF 137

[Close]

BLAST of Carg21137 vs. TrEMBL
Match: tr|A0A1S3BQI1|A0A1S3BQI1_CUCME (Histone H2A OS=Cucumis melo OX=3656 GN=LOC103492212 PE=3 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 2.5e-65
Identity = 132/134 (98.51%), Postives = 133/134 (99.25%), Query Frame = 0


Query: 3   STKGGRGKPKATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 62
           STKGGRGKPKATKSV+RSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA
Sbjct: 7   STKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 66

Query: 63  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGCVTIANGGVLPNIHQTLLPKKV 122
           EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQTLLPKKV
Sbjct: 67  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKV 126

Query: 123 GKDKGDIGSASQEF 137
           GKDKGDIGSASQEF
Sbjct: 127 GKDKGDIGSASQEF 140

[Close]

BLAST of Carg21137 vs. TrEMBL
Match: tr|A0A0A0LW51|A0A0A0LW51_CUCSA (Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_1G572950 PE=3 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 2.5e-65
Identity = 132/134 (98.51%), Postives = 133/134 (99.25%), Query Frame = 0


Query: 3   STKGGRGKPKATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 62
           STKGGRGKPKATKSV+RSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA
Sbjct: 7   STKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 66

Query: 63  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGCVTIANGGVLPNIHQTLLPKKV 122
           EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQTLLPKKV
Sbjct: 67  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKV 126

Query: 123 GKDKGDIGSASQEF 137
           GKDKGDIGSASQEF
Sbjct: 127 GKDKGDIGSASQEF 140

[Close]

BLAST of Carg21137 vs. TrEMBL
Match: tr|B9MZP0|B9MZP0_POPTR (Histone H2A OS=Populus trichocarpa OX=3694 GN=POPTR_005G040800v3 PE=3 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 4.8e-64
Identity = 130/135 (96.30%), Postives = 133/135 (98.52%), Query Frame = 0


Query: 2   SSTKGGRGKPKATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLA 61
           +STKGGRGKPKA+KSV+RSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLA
Sbjct: 8   ASTKGGRGKPKASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLA 67

Query: 62  AEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGCVTIANGGVLPNIHQTLLPKK 121
           AEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQTLLPKK
Sbjct: 68  AEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 127

Query: 122 VGKDKGDIGSASQEF 137
           VGK KGDIGSASQEF
Sbjct: 128 VGKGKGDIGSASQEF 142

[Close]

BLAST of Carg21137 vs. TrEMBL
Match: tr|M5W1R5|M5W1R5_PRUPE (Histone H2A OS=Prunus persica OX=3760 GN=PRUPE_6G332900 PE=3 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 4.8e-64
Identity = 130/134 (97.01%), Postives = 132/134 (98.51%), Query Frame = 0


Query: 3   STKGGRGKPKATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 62
           STKGGRGKPKA+KSV+RSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA
Sbjct: 8   STKGGRGKPKASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 67

Query: 63  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGCVTIANGGVLPNIHQTLLPKKV 122
           EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQTLLPKKV
Sbjct: 68  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKV 127

Query: 123 GKDKGDIGSASQEF 137
           GK KGDIGSASQEF
Sbjct: 128 GKGKGDIGSASQEF 141

[Close]

BLAST of Carg21137 vs. TrEMBL
Match: tr|V4TA53|V4TA53_9ROSI (Histone H2A OS=Citrus clementina OX=85681 GN=CICLE_v10002804mg PE=3 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 4.8e-64
Identity = 130/134 (97.01%), Postives = 132/134 (98.51%), Query Frame = 0


Query: 3   STKGGRGKPKATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 62
           STKGGRGKPKA+KSV+RSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA
Sbjct: 7   STKGGRGKPKASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 66

Query: 63  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGCVTIANGGVLPNIHQTLLPKKV 122
           EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQTLLPKKV
Sbjct: 67  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKV 126

Query: 123 GKDKGDIGSASQEF 137
           GK KGDIGSASQEF
Sbjct: 127 GKGKGDIGSASQEF 140

The following BLAST results are available for this feature:

BLAST of Carg21137 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022933937.1	8.2e-68	100.00	probable histone H2AXb [Cucurbita moschata] >XP_022971521.1 probable histone H2A...	[more]
XP_022961601.1	3.5e-66	98.53	probable histone H2AXb [Cucurbita moschata] >XP_023515960.1 probable histone H2A...	[more]
XP_004135645.1	3.8e-65	98.51	PREDICTED: histone H2AX [Cucumis sativus] >XP_008450716.1 PREDICTED: histone H2A...	[more]
XP_022154594.1	3.8e-65	98.51	probable histone H2AXb [Momordica charantia]	[more]
XP_022968814.1	3.8e-65	97.79	probable histone H2AXb [Cucurbita maxima]	[more]

BLAST of Carg21137 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G54690.1	1.2e-65	94.78	gamma histone variant H2AX	[more]
AT1G08880.1	2.7e-65	94.03	Histone superfamily protein	[more]
AT4G27230.1	8.5e-51	84.68	histone H2A 2	[more]
AT1G51060.1	2.5e-50	83.87	histone H2A 10	[more]
AT5G54640.1	3.2e-50	83.87	Histone superfamily protein	[more]

BLAST of Carg21137 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9S9K7\|H2AXB_ARATH	2.2e-64	94.78	Probable histone H2AXb OS=Arabidopsis thaliana OX=3702 GN=At1g54690 PE=1 SV=1	[more]
sp\|O04848\|H2AXA_ARATH	4.9e-64	94.03	Probable histone H2AXa OS=Arabidopsis thaliana OX=3702 GN=At1g08880 PE=1 SV=1	[more]
sp\|O65759\|H2AX_CICAR	6.4e-64	93.33	Histone H2AX OS=Cicer arietinum OX=3827 GN=HIS2A PE=2 SV=1	[more]
sp\|P35063\|H2AX_PICAB	9.3e-63	91.85	Histone H2AX OS=Picea abies OX=3329 PE=2 SV=1	[more]
sp\|A2XLI0\|H2AXA_ORYSI	9.9e-57	86.96	Probable histone H2AXa OS=Oryza sativa subsp. indica OX=39946 GN=OsI_012923 PE=3...	[more]

BLAST of Carg21137 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BQI1\|A0A1S3BQI1_CUCME	2.5e-65	98.51	Histone H2A OS=Cucumis melo OX=3656 GN=LOC103492212 PE=3 SV=1	[more]
tr\|A0A0A0LW51\|A0A0A0LW51_CUCSA	2.5e-65	98.51	Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_1G572950 PE=3 SV=1	[more]
tr\|B9MZP0\|B9MZP0_POPTR	4.8e-64	96.30	Histone H2A OS=Populus trichocarpa OX=3694 GN=POPTR_005G040800v3 PE=3 SV=1	[more]
tr\|M5W1R5\|M5W1R5_PRUPE	4.8e-64	97.01	Histone H2A OS=Prunus persica OX=3760 GN=PRUPE_6G332900 PE=3 SV=1	[more]
tr\|V4TA53\|V4TA53_9ROSI	4.8e-64	97.01	Histone H2A OS=Citrus clementina OX=85681 GN=CICLE_v10002804mg PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046982	protein heterodimerization activity
GO:0003677	DNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus
GO:0000786	nucleosome

Vocabulary: **INTERPRO**
Term	Definition
IPR032458	Histone_H2A_CS
IPR032454	Histone_H2A_C
IPR009072	Histone-fold
IPR007125	Histone_H2A/H2B/H3
IPR002119	Histone_H2A

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg21137-RA	Carg21137-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002119	Histone H2A	PRINTS	PR00620	HISTONEH2A	coord: 44..59 score: 84.58 coord: 15..37 score: 68.12 coord: 73..87 score: 75.49 coord: 59..72 score: 89.46 coord: 101..119 score: 70.13
IPR002119	Histone H2A	SMART	SM00414	h2a4	coord: 4..124 e-value: 1.1E-75 score: 267.4
IPR002119	Histone H2A	CDD	cd00074	H2A	coord: 9..121 e-value: 1.06438E-65 score: 196.787
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 12..90 e-value: 3.2E-14 score: 53.3
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 3..129 e-value: 1.0E-59 score: 201.8
IPR009072	Histone-fold	SUPERFAMILY	SSF47113	Histone-fold	coord: 18..121
IPR032454	Histone H2A, C-terminal domain	PFAM	PF16211	Histone_H2A_C	coord: 93..126 e-value: 2.4E-18 score: 65.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	PANTHER	PTHR23430:SF197	SUBFAMILY NOT NAMED	coord: 1..135
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 1..135
IPR032458	Histone H2A conserved site	PROSITE	PS00046	HISTONE_H2A	coord: 23..29

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg21137	Cla011310	Watermelon (97103) v1	carwmB0548
Carg21137	Csa1G572950	Cucumber (Chinese Long) v2	carcuB0580
Carg21137	MELO3C015363	Melon (DHL92) v3.5.1	carmeB0555
Carg21137	ClCG03G016620	Watermelon (Charleston Gray)	carwcgB0535
Carg21137	CSPI01G27050	Wild cucumber (PI 183967)	carcpiB0586
Carg21137	Cucsa.163750	Cucumber (Gy14) v1	carcgyB0629
Carg21137	CmaCh11G011090	Cucurbita maxima (Rimu)	carcmaB0769
Carg21137	CmoCh11G011440	Cucurbita moschata (Rifu)	carcmoB0747
Carg21137	Lsi06G001690	Bottle gourd (USVL1VR-Ls)	carlsiB501
Carg21137	Cp4.1LG04g00730	Cucurbita pepo (Zucchini)	carcpeB0781
Carg21137	CsGy1G026230	Cucumber (Gy14) v2	carcgybB0556
Carg21137	MELO3C015363.2	Melon (DHL92) v3.6.1	carmedB0561
Carg21137	CsaV3_1G039370	Cucumber (Chinese Long) v3	carcucB0587
Carg21137	Cla97C03G066930	Watermelon (97103) v2	carwmbB0576

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None