Csa5G021310 (gene) Cucumber (Chinese Long) v2

NameCsa5G021310
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionTsr2248 protein
LocationChr5 : 710881 .. 711656 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTGAATAGCTTCCACCTTATCTGCAATGGTCAAAATTCCTCCACATTTTCCTTTCAACTTTCATCCAACAAAACACATAATTCAAAACCAAAAATGGCAACAAACTTCCACAAAACCCCAATCCTTCACTCAATTTCTCTTACAAATCTCTTCCCAATACTTCCCAGCAATCCAAAACCATCTCTCACCAACACCCCTTTCTCTTTCCCATTAATCCATAAATCACCCAATTTCAAAACTTGTCTCCCTCGCCCTGGCCCCAATCGTTGCGCTGCTCGGCGGAGAGTTCGTTACGACGACGACGACGAAGATGAAGATGAAGATTACGGCCACAACCATCAGATTGCACTGTTGGAATCCTACACTCAGGCCGCCACAGGAGAAGCACTCATCGTTCATGCCATGGTTGACGGTGACCATGTTGAAGTTCTTGTCTTCAAGGTTTTTCCTCTTTTCTGTTCAGAGATTTATTGTTTTGGTTAAATAATTAGAATATAATTTTTAGTAATGTTTAGTAGATAAAGAAGAAGAAGAGTTGTTAAAAACTGAAAAAGAATATAAACGGAGTAGAAAATGTGTGGAATGATTAATATTATATTTGTAGGGATTCTCATCAAGTTTGAGCTATGGGACATCACCTGATCCATCAAGAAGTGTTCTTCCCGAAAGAGCAATCATTAAATTCATTGATAGAATCAAAGGCCCATTTGATCCATCAAATATCCAATACATTCAGAAGGGTATCACTTGGAATTCATTTAACTTCCTCAATTAA

mRNA sequence

ATGGCAACAAACTTCCACAAAACCCCAATCCTTCACTCAATTTCTCTTACAAATCTCTTCCCAATACTTCCCAGCAATCCAAAACCATCTCTCACCAACACCCCTTTCTCTTTCCCATTAATCCATAAATCACCCAATTTCAAAACTTGTCTCCCTCGCCCTGGCCCCAATCGTTGCGCTGCTCGGCGGAGAGTTCGTTACGACGACGACGACGAAGATGAAGATGAAGATTACGGCCACAACCATCAGATTGCACTGTTGGAATCCTACACTCAGGCCGCCACAGGAGAAGCACTCATCGTTCATGCCATGGTTGACGGTGACCATGTTGAAGTTCTTGTCTTCAAGGGATTCTCATCAAGTTTGAGCTATGGGACATCACCTGATCCATCAAGAAGTGTTCTTCCCGAAAGAGCAATCATTAAATTCATTGATAGAATCAAAGGCCCATTTGATCCATCAAATATCCAATACATTCAGAAGGGTATCACTTGGAATTCATTTAACTTCCTCAATTAA

Coding sequence (CDS)

ATGGCAACAAACTTCCACAAAACCCCAATCCTTCACTCAATTTCTCTTACAAATCTCTTCCCAATACTTCCCAGCAATCCAAAACCATCTCTCACCAACACCCCTTTCTCTTTCCCATTAATCCATAAATCACCCAATTTCAAAACTTGTCTCCCTCGCCCTGGCCCCAATCGTTGCGCTGCTCGGCGGAGAGTTCGTTACGACGACGACGACGAAGATGAAGATGAAGATTACGGCCACAACCATCAGATTGCACTGTTGGAATCCTACACTCAGGCCGCCACAGGAGAAGCACTCATCGTTCATGCCATGGTTGACGGTGACCATGTTGAAGTTCTTGTCTTCAAGGGATTCTCATCAAGTTTGAGCTATGGGACATCACCTGATCCATCAAGAAGTGTTCTTCCCGAAAGAGCAATCATTAAATTCATTGATAGAATCAAAGGCCCATTTGATCCATCAAATATCCAATACATTCAGAAGGGTATCACTTGGAATTCATTTAACTTCCTCAATTAA

Protein sequence

MATNFHKTPILHSISLTNLFPILPSNPKPSLTNTPFSFPLIHKSPNFKTCLPRPGPNRCAARRRVRYDDDDEDEDEDYGHNHQIALLESYTQAATGEALIVHAMVDGDHVEVLVFKGFSSSLSYGTSPDPSRSVLPERAIIKFIDRIKGPFDPSNIQYIQKGITWNSFNFLN*
BLAST of Csa5G021310 vs. TrEMBL
Match: A0A0A0KJ82_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G021310 PE=4 SV=1)

HSP 1 Score: 359.0 bits (920), Expect = 3.3e-96
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 1

Query: 1   MATNFHKTPILHSISLTNLFPILPSNPKPSLTNTPFSFPLIHKSPNFKTCLPRPGPNRCA 60
           MATNFHKTPILHSISLTNLFPILPSNPKPSLTNTPFSFPLIHKSPNFKTCLPRPGPNRCA
Sbjct: 1   MATNFHKTPILHSISLTNLFPILPSNPKPSLTNTPFSFPLIHKSPNFKTCLPRPGPNRCA 60

Query: 61  ARRRVRYDDDDEDEDEDYGHNHQIALLESYTQAATGEALIVHAMVDGDHVEVLVFKGFSS 120
           ARRRVRYDDDDEDEDEDYGHNHQIALLESYTQAATGEALIVHAMVDGDHVEVLVFKGFSS
Sbjct: 61  ARRRVRYDDDDEDEDEDYGHNHQIALLESYTQAATGEALIVHAMVDGDHVEVLVFKGFSS 120

Query: 121 SLSYGTSPDPSRSVLPERAIIKFIDRIKGPFDPSNIQYIQKGITWNSFNFLN 173
           SLSYGTSPDPSRSVLPERAIIKFIDRIKGPFDPSNIQYIQKGITWNSFNFLN
Sbjct: 121 SLSYGTSPDPSRSVLPERAIIKFIDRIKGPFDPSNIQYIQKGITWNSFNFLN 172

BLAST of Csa5G021310 vs. TrEMBL
Match: B9T4M8_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0053580 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 9.6e-40
Identity = 89/150 (59.33%), Postives = 113/150 (75.33%), Query Frame = 1

Query: 22  ILPSNPKP--SLTNTPFSFPLIHKSPNFKTCLPRPGPNRCAARRRVRY-DDDDEDEDEDY 81
           +L S PKP  SL N   + P I      +T +P     RC+ARRRVRY D++D+D+D++Y
Sbjct: 1   MLSSLPKPNTSLHNNLITSPAIKSLKLSRTRVPVSWL-RCSARRRVRYEDENDDDDDDEY 60

Query: 82  GHNHQIALLESYTQAATGEALIVHAMVDGDHVEVLVFKGFSSSLSYGTSPDPSRSVLPER 141
           GHN +IA+LE Y+Q+A  EAL+VHA VD    EVL+FKGFSS LSY TSPDPS+SVLP R
Sbjct: 61  GHNEEIAILEFYSQSAREEALLVHAAVDEQEAEVLIFKGFSSCLSYKTSPDPSKSVLPAR 120

Query: 142 AIIKFIDRIKGPFDPSNIQYIQKGITWNSF 169
           A+IK IDRIKGPFDPSNI+Y++KG+TW +F
Sbjct: 121 AVIKSIDRIKGPFDPSNIEYLEKGLTWQAF 149

BLAST of Csa5G021310 vs. TrEMBL
Match: D7T8K4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g05820 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 1.6e-39
Identity = 77/111 (69.37%), Postives = 98/111 (88.29%), Query Frame = 1

Query: 58  RCAARRRVRYDDDDEDEDEDYGHNHQIALLESYTQAATGEALIVHAMVDGDHVEVLVFKG 117
           RC ARRRVRY+D+DE E+++YGHN +IA+LE Y+Q+A GEAL+VHAMVD   VEVL+FKG
Sbjct: 51  RCRARRRVRYEDEDEGEEDEYGHNAEIAMLELYSQSARGEALLVHAMVDDQDVEVLIFKG 110

Query: 118 FSSSLSYGTSPDPSRSVLPERAIIKFIDRIKGPFDPSNIQYIQKGITWNSF 169
           FSS LSY TSPDPS+S+LP RA+IK IDRIKGPF+PS+I+YI+KG+ W++F
Sbjct: 111 FSSCLSYRTSPDPSKSILPARAVIKSIDRIKGPFNPSDIEYIEKGLAWDAF 161

BLAST of Csa5G021310 vs. TrEMBL
Match: B9HJH1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s13480g PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 2.4e-38
Identity = 80/113 (70.80%), Postives = 99/113 (87.61%), Query Frame = 1

Query: 58  RCAARRR-VRYDDDDEDE-DEDYGHNHQIALLESYTQAATGEALIVHAMVDGDHVEVLVF 117
           RC ARRR VRY+D+DED+ +E+YGHN +IA+LE Y+Q+A GEAL+VHA+VD   VEVL+F
Sbjct: 54  RCRARRRSVRYEDEDEDDREEEYGHNLEIAMLEFYSQSAIGEALLVHAIVDEQEVEVLIF 113

Query: 118 KGFSSSLSYGTSPDPSRSVLPERAIIKFIDRIKGPFDPSNIQYIQKGITWNSF 169
           KGFSS LSYGTSPDPSRSVLP RA+IK IDRIKGPF+PSNI+Y++K +TW +F
Sbjct: 114 KGFSSCLSYGTSPDPSRSVLPARAVIKSIDRIKGPFNPSNIEYLEKDLTWEAF 166

BLAST of Csa5G021310 vs. TrEMBL
Match: A0A072VF21_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_1g032560 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 3.1e-38
Identity = 74/110 (67.27%), Postives = 94/110 (85.45%), Query Frame = 1

Query: 59  CAARRRVRYDDDDEDEDEDYGHNHQIALLESYTQAATGEALIVHAMVDGDHVEVLVFKGF 118
           C ARR++RY D+DE+ D++ GHN +I+ LE Y+Q+A GEALIVHA+VD + VEVL+FKGF
Sbjct: 56  CGARRQIRYQDEDEERDDESGHNEEISKLEFYSQSARGEALIVHALVDQNEVEVLIFKGF 115

Query: 119 SSSLSYGTSPDPSRSVLPERAIIKFIDRIKGPFDPSNIQYIQKGITWNSF 169
           SSSLSYGTSPDP+RS+LP RA+IK IDRIKGPFDP+NI+Y+QK + W  F
Sbjct: 116 SSSLSYGTSPDPTRSILPARAVIKSIDRIKGPFDPANIEYLQKDVPWEEF 165

BLAST of Csa5G021310 vs. TAIR10
Match: AT2G01755.1 (AT2G01755.1 unknown protein)

HSP 1 Score: 132.5 bits (332), Expect = 2.5e-31
Identity = 65/110 (59.09%), Postives = 83/110 (75.45%), Query Frame = 1

Query: 59  CAARRRVRYDDDDEDEDEDYGHNHQIALLESYTQAATGEALIVHAMVDGDHVEVLVFKGF 118
           C ARRRVR +   EDEDE YG+N ++A+LE Y+Q+   EALIV A+VD + VEV++FKG 
Sbjct: 58  CGARRRVRDEGGGEDEDEMYGYNEEMAMLEIYSQSCREEALIVTAIVDDEEVEVVIFKGV 117

Query: 119 SSSLSYGTSPDPSRSVLPERAIIKFIDRIKGPFDPSNIQYIQKGITWNSF 169
           SS LS  T+ DP+RSVLPERA+I  IDR++GPFDPS I YIQ+ I++ +F
Sbjct: 118 SSCLSGETAVDPARSVLPERAVITKIDRVRGPFDPSQIHYIQRDISFQAF 167

BLAST of Csa5G021310 vs. NCBI nr
Match: gi|778698045|ref|XP_004142303.2| (PREDICTED: uncharacterized protein LOC101213440 [Cucumis sativus])

HSP 1 Score: 359.0 bits (920), Expect = 4.7e-96
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 1

Query: 1   MATNFHKTPILHSISLTNLFPILPSNPKPSLTNTPFSFPLIHKSPNFKTCLPRPGPNRCA 60
           MATNFHKTPILHSISLTNLFPILPSNPKPSLTNTPFSFPLIHKSPNFKTCLPRPGPNRCA
Sbjct: 1   MATNFHKTPILHSISLTNLFPILPSNPKPSLTNTPFSFPLIHKSPNFKTCLPRPGPNRCA 60

Query: 61  ARRRVRYDDDDEDEDEDYGHNHQIALLESYTQAATGEALIVHAMVDGDHVEVLVFKGFSS 120
           ARRRVRYDDDDEDEDEDYGHNHQIALLESYTQAATGEALIVHAMVDGDHVEVLVFKGFSS
Sbjct: 61  ARRRVRYDDDDEDEDEDYGHNHQIALLESYTQAATGEALIVHAMVDGDHVEVLVFKGFSS 120

Query: 121 SLSYGTSPDPSRSVLPERAIIKFIDRIKGPFDPSNIQYIQKGITWNSFNFLN 173
           SLSYGTSPDPSRSVLPERAIIKFIDRIKGPFDPSNIQYIQKGITWNSFNFLN
Sbjct: 121 SLSYGTSPDPSRSVLPERAIIKFIDRIKGPFDPSNIQYIQKGITWNSFNFLN 172

BLAST of Csa5G021310 vs. NCBI nr
Match: gi|659102980|ref|XP_008452414.1| (PREDICTED: uncharacterized protein LOC103493452 [Cucumis melo])

HSP 1 Score: 292.0 bits (746), Expect = 7.0e-76
Identity = 148/170 (87.06%), Postives = 152/170 (89.41%), Query Frame = 1

Query: 1   MATNFHKTPILHSISLTNLFPILPSNPKPSLTNTPFSFPLIHKSPNFKTCLPRPGPNRCA 60
           MATN HKTPILHS SLTNLFP  PSNP  SLTN PFSFP IHKSPNFKTC+  PG   CA
Sbjct: 1   MATNLHKTPILHSNSLTNLFPF-PSNPNTSLTNIPFSFP-IHKSPNFKTCVRGPGHKGCA 60

Query: 61  ARRRVRYDDDDEDEDEDYGHNHQIALLESYTQAATGEALIVHAMVDGDHVEVLVFKGFSS 120
           ARRRVRY DDDEDEDEDYGHN QIALLESYTQAATGEALIVHAMVDG+HVEVLVFKGFSS
Sbjct: 61  ARRRVRY-DDDEDEDEDYGHNDQIALLESYTQAATGEALIVHAMVDGEHVEVLVFKGFSS 120

Query: 121 SLSYGTSPDPSRSVLPERAIIKFIDRIKGPFDPSNIQYIQKGITWNSFNF 171
            LSYGTSPDPSRSV+PERA IK IDRIKGPFDPSNIQYI+KGITWNSFNF
Sbjct: 121 CLSYGTSPDPSRSVVPERATIKSIDRIKGPFDPSNIQYIEKGITWNSFNF 167

BLAST of Csa5G021310 vs. NCBI nr
Match: gi|658062188|ref|XP_008366983.1| (PREDICTED: uncharacterized protein LOC103430615 [Malus domestica])

HSP 1 Score: 178.7 bits (452), Expect = 8.6e-42
Identity = 87/125 (69.60%), Postives = 103/125 (82.40%), Query Frame = 1

Query: 46  NFKTCLPRPGPNRCAARRRV-RYDDD-DEDEDEDYGHNHQIALLESYTQAATGEALIVHA 105
           N     PR    RCAARRRV RYDDD D+DED +YGHN +IA+LE Y+Q+  GEALIVHA
Sbjct: 51  NVNAFRPRGLSTRCAARRRVLRYDDDEDDDEDVEYGHNKEIAVLELYSQSVRGEALIVHA 110

Query: 106 MVDGDHVEVLVFKGFSSSLSYGTSPDPSRSVLPERAIIKFIDRIKGPFDPSNIQYIQKGI 165
           +VD   VEVL+FKGFSSSLSYGTSPDPS+S+LP RA+IK IDR+KGPFDPSNI+Y+QKG+
Sbjct: 111 LVDDQDVEVLIFKGFSSSLSYGTSPDPSKSILPARAVIKAIDRVKGPFDPSNIEYLQKGL 170

Query: 166 TWNSF 169
           TW +F
Sbjct: 171 TWEAF 175

BLAST of Csa5G021310 vs. NCBI nr
Match: gi|657993744|ref|XP_008389168.1| (PREDICTED: uncharacterized protein LOC103451535 [Malus domestica])

HSP 1 Score: 178.7 bits (452), Expect = 8.6e-42
Identity = 87/125 (69.60%), Postives = 103/125 (82.40%), Query Frame = 1

Query: 46  NFKTCLPRPGPNRCAARRRV-RYDDD-DEDEDEDYGHNHQIALLESYTQAATGEALIVHA 105
           N     PR    RCAARRRV RYDDD D+DED +YGHN +IA+LE Y+Q+  GEALIVHA
Sbjct: 51  NVNAFRPRGLSTRCAARRRVLRYDDDEDDDEDVEYGHNKEIAVLELYSQSVRGEALIVHA 110

Query: 106 MVDGDHVEVLVFKGFSSSLSYGTSPDPSRSVLPERAIIKFIDRIKGPFDPSNIQYIQKGI 165
           +VD   VEVL+FKGFSSSLSYGTSPDPS+S+LP RA+IK IDR+KGPFDPSNI+Y+QKG+
Sbjct: 111 LVDDQDVEVLIFKGFSSSLSYGTSPDPSKSILPARAVIKAIDRVKGPFDPSNIEYLQKGL 170

Query: 166 TWNSF 169
           TW +F
Sbjct: 171 TWEAF 175

BLAST of Csa5G021310 vs. NCBI nr
Match: gi|1000939505|ref|XP_002533197.2| (PREDICTED: uncharacterized protein LOC8270677 [Ricinus communis])

HSP 1 Score: 172.2 bits (435), Expect = 8.1e-40
Identity = 89/152 (58.55%), Postives = 114/152 (75.00%), Query Frame = 1

Query: 20  FPILPSNPKP--SLTNTPFSFPLIHKSPNFKTCLPRPGPNRCAARRRVRY-DDDDEDEDE 79
           + +L S PKP  SL N   + P I      +T +P     RC+ARRRVRY D++D+D+D+
Sbjct: 14  YSMLSSLPKPNTSLHNNLITSPAIKSLKLSRTRVPVSWL-RCSARRRVRYEDENDDDDDD 73

Query: 80  DYGHNHQIALLESYTQAATGEALIVHAMVDGDHVEVLVFKGFSSSLSYGTSPDPSRSVLP 139
           +YGHN +IA+LE Y+Q+A  EAL+VHA VD    EVL+FKGFSS LSY TSPDPS+SVLP
Sbjct: 74  EYGHNEEIAILEFYSQSAREEALLVHAAVDEQEAEVLIFKGFSSCLSYKTSPDPSKSVLP 133

Query: 140 ERAIIKFIDRIKGPFDPSNIQYIQKGITWNSF 169
            RA+IK IDRIKGPFDPSNI+Y++KG+TW +F
Sbjct: 134 ARAVIKSIDRIKGPFDPSNIEYLEKGLTWQAF 164

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0KJ82_CUCSA3.3e-96100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G021310 PE=4 SV=1[more]
B9T4M8_RICCO9.6e-4059.33Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0053580 PE=4 SV=1[more]
D7T8K4_VITVI1.6e-3969.37Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g05820 PE=4 SV=... [more]
B9HJH1_POPTR2.4e-3870.80Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s13480g PE=4 SV=1[more]
A0A072VF21_MEDTR3.1e-3867.27Uncharacterized protein OS=Medicago truncatula GN=MTR_1g032560 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G01755.12.5e-3159.09 unknown protein[more]
Match NameE-valueIdentityDescription
gi|778698045|ref|XP_004142303.2|4.7e-96100.00PREDICTED: uncharacterized protein LOC101213440 [Cucumis sativus][more]
gi|659102980|ref|XP_008452414.1|7.0e-7687.06PREDICTED: uncharacterized protein LOC103493452 [Cucumis melo][more]
gi|658062188|ref|XP_008366983.1|8.6e-4269.60PREDICTED: uncharacterized protein LOC103430615 [Malus domestica][more]
gi|657993744|ref|XP_008389168.1|8.6e-4269.60PREDICTED: uncharacterized protein LOC103451535 [Malus domestica][more]
gi|1000939505|ref|XP_002533197.2|8.1e-4058.55PREDICTED: uncharacterized protein LOC8270677 [Ricinus communis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0009507 chloroplast
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU136904cucumber EST collection version 3.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa5G021310.1Csa5G021310.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU136904CU136904transcribed_cluster


Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36729FAMILY NOT NAMEDcoord: 1..168
score: 2.0