Carg00140 (gene) Silver-seed gourd

NameCarg00140
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionPyruvate dehydrogenase complex, dehydrogenase (E1) component
LocationCucurbita_argyrosperma_scaffold_001 : 736589 .. 737187 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAACCACCTCCAAACATCCCCAATCCTTCACTCCGATTCTCTCCCCACCGTTCTCCGGCCATTTTCCGGCGACCTAAACACAACTCCAACCAAAATCACTTCCTCTTTCTCTTTCACAATCCACGATTCGCTAAATTTCAGAGCTCGCCGCCGCCGCCAACGCCTTAACGATTGCGCTGCTCGGCGGAGAGTCCGATACGATGATGAAGAAGATGAAGATGAAGAGTATGGCCACAATGAACAGATTGCGCTTCTGGAATCCTACACTCAGGCCGCCGCCGGCGAGGCGCTGATCGTTCACGCGGCGCTCGATGGCGACCTCGTTGAAGTTCTCGTCTTCAAGGTTTTTCTTCGTTTCTTTAAATTTAGGGTTTAGGTTAGATTAAAAATTTTAATTGAGAATGAGATGTAAAAATTGGACAGGGATTCTCATCGTGCTTGAGCTATGCGACTTCATCTGATCCATCCAGAAGTGTTCTTCCAGCAAGAGCAACGATTCAATCCATTGATAGAATCAAAGGCCCTTTTGATCCATCAAATATCGAATACATTGAGAGGGGTATCACTTGGGAATCATTCAACTTCCCTCCATAG

mRNA sequence

ATGGCGAACCACCTCCAAACATCCCCAATCCTTCACTCCGATTCTCTCCCCACCGTTCTCCGGCCATTTTCCGGCGACCTAAACACAACTCCAACCAAAATCACTTCCTCTTTCTCTTTCACAATCCACGATTCGCTAAATTTCAGAGCTCGCCGCCGCCGCCAACGCCTTAACGATTGCGCTGCTCGGCGGAGAGTCCGATACGATGATGAAGAAGATGAAGATGAAGAGTATGGCCACAATGAACAGATTGCGCTTCTGGAATCCTACACTCAGGCCGCCGCCGGCGAGGCGCTGATCGTTCACGCGGCGCTCGATGGCGACCTCGTTGAAGTTCTCGTCTTCAAGGGATTCTCATCGTGCTTGAGCTATGCGACTTCATCTGATCCATCCAGAAGTGTTCTTCCAGCAAGAGCAACGATTCAATCCATTGATAGAATCAAAGGCCCTTTTGATCCATCAAATATCGAATACATTGAGAGGGGTATCACTTGGGAATCATTCAACTTCCCTCCATAG

Coding sequence (CDS)

ATGGCGAACCACCTCCAAACATCCCCAATCCTTCACTCCGATTCTCTCCCCACCGTTCTCCGGCCATTTTCCGGCGACCTAAACACAACTCCAACCAAAATCACTTCCTCTTTCTCTTTCACAATCCACGATTCGCTAAATTTCAGAGCTCGCCGCCGCCGCCAACGCCTTAACGATTGCGCTGCTCGGCGGAGAGTCCGATACGATGATGAAGAAGATGAAGATGAAGAGTATGGCCACAATGAACAGATTGCGCTTCTGGAATCCTACACTCAGGCCGCCGCCGGCGAGGCGCTGATCGTTCACGCGGCGCTCGATGGCGACCTCGTTGAAGTTCTCGTCTTCAAGGGATTCTCATCGTGCTTGAGCTATGCGACTTCATCTGATCCATCCAGAAGTGTTCTTCCAGCAAGAGCAACGATTCAATCCATTGATAGAATCAAAGGCCCTTTTGATCCATCAAATATCGAATACATTGAGAGGGGTATCACTTGGGAATCATTCAACTTCCCTCCATAG

Protein sequence

MANHLQTSPILHSDSLPTVLRPFSGDLNTTPTKITSSFSFTIHDSLNFRARRRRQRLNDCAARRRVRYDDEEDEDEEYGHNEQIALLESYTQAAAGEALIVHAALDGDLVEVLVFKGFSSCLSYATSSDPSRSVLPARATIQSIDRIKGPFDPSNIEYIERGITWESFNFPP
BLAST of Carg00140 vs. NCBI nr
Match: XP_022942665.1 (uncharacterized protein LOC111447634 [Cucurbita moschata])

HSP 1 Score: 273.1 bits (697), Expect = 6.5e-70
Identity = 149/171 (87.13%), Postives = 151/171 (88.30%), Query Frame = 0

Query: 1   MANHLQTSPILHSDSLPTVLRPFSGDLNTTPTKITSSFSFTIHDSLNFRARXXXXXXXXX 60
           MANHLQTSPILHSDSLPTVLRPFSGDLNTTPTKIT SFSFTIHDSLNFRAR         
Sbjct: 1   MANHLQTSPILHSDSLPTVLRPFSGDLNTTPTKITFSFSFTIHDSLNFRARRRPQRLNDC 60

Query: 61  XXXXXXXXXXXXXXXXXXGHNEQIALLESYTQAAAGEALIVHAALDGDLVEVLVFKGFSS 120
                    XXXXXXXX GHNEQIALLESYTQAAAGEALIVHAALDGDLVEVLVFKGFSS
Sbjct: 61  AARRRVRYDXXXXXXXXYGHNEQIALLESYTQAAAGEALIVHAALDGDLVEVLVFKGFSS 120

Query: 121 CLSYATSSDPSRSVLPARATIQSIDRIKGPFDPSNIEYIERGITWESFNFP 172
           CLS+ATSSDPSRSVLPARATIQSIDRIKGPFDPSNIEYI+RGITWESFNFP
Sbjct: 121 CLSFATSSDPSRSVLPARATIQSIDRIKGPFDPSNIEYIQRGITWESFNFP 171

BLAST of Carg00140 vs. NCBI nr
Match: XP_022985163.1 (uncharacterized protein LOC111483247 [Cucurbita maxima])

HSP 1 Score: 230.7 bits (587), Expect = 3.7e-57
Identity = 150/171 (87.72%), Postives = 154/171 (90.06%), Query Frame = 0

Query: 1   MANHLQTSPILHSDSLPTVLRPFSGDLNTTPTKITSSFSFTIHDSLNFRARXXXXXXXXX 60
           MANHLQTSPILHSDSLPTVLRPFSGDLNTTPTKI                 XXXXXXXXX
Sbjct: 1   MANHLQTSPILHSDSLPTVLRPFSGDLNTTPTKI-XXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXGHNEQIALLESYTQAAAGEALIVHAALDGDLVEVLVFKGFSS 120
           XXXXXXXXXXXXXXXXXXGHNEQI+LLESYTQAAAGEALIVHAALDGDLVEVLVFKGFSS
Sbjct: 61  XXXXXXXXXXXXXXXXXXGHNEQISLLESYTQAAAGEALIVHAALDGDLVEVLVFKGFSS 120

Query: 121 CLSYATSSDPSRSVLPARATIQSIDRIKGPFDPSNIEYIERGITWESFNFP 172
           CLSYATSSDPSRSVLPARATIQSIDRIKGPFDPSNIEYI++G+TWESFNFP
Sbjct: 121 CLSYATSSDPSRSVLPARATIQSIDRIKGPFDPSNIEYIQKGVTWESFNFP 170

BLAST of Carg00140 vs. NCBI nr
Match: XP_023550628.1 (uncharacterized protein LOC111808712 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 202.6 bits (514), Expect = 1.1e-48
Identity = 140/170 (82.35%), Postives = 142/170 (83.53%), Query Frame = 0

Query: 1   MANHLQTSPILHSDSLPTVLRPFSGDLNTTPTKITSSFSFTIHDSLNFRARXXXXXXXXX 60
           MANHLQTSPILHSDSLPTVLRP SGDLNTTP                    XXXXXXXXX
Sbjct: 1   MANHLQTSPILHSDSLPTVLRPLSGDLNTTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXGHNEQIALLESYTQAAAGEALIVHAALDGDLVEVLVFKGFSS 120
           XXXXXXXXXXXXXXXXXX HNEQIALLESYT+ AAGEALIVHAALDGDLVEVLVFKGFSS
Sbjct: 61  XXXXXXXXXXXXXXXXXXXHNEQIALLESYTRGAAGEALIVHAALDGDLVEVLVFKGFSS 120

Query: 121 CLSYATSSDPSRSVLPARATIQSIDRIKGPFDPSNIEYIERGITWESFNF 171
           CLSYATSSDPSRSVLPARATIQSIDRIKGPFDPSNIEYI+RG     FNF
Sbjct: 121 CLSYATSSDPSRSVLPARATIQSIDRIKGPFDPSNIEYIQRG-----FNF 165

BLAST of Carg00140 vs. NCBI nr
Match: XP_008452414.1 (PREDICTED: uncharacterized protein LOC103493452 [Cucumis melo])

HSP 1 Score: 184.5 bits (467), Expect = 3.0e-43
Identity = 117/171 (68.42%), Postives = 130/171 (76.02%), Query Frame = 0

Query: 1   MANHLQTSPILHSDSLPTVLRPFSGDLNTTPTKITSSFSFTIHDSLNFRARXXXXXXXXX 60
           MA +L  +PILHS+SL T L PF  + NT+ T I   FSF IH S NF+           
Sbjct: 1   MATNLHKTPILHSNSL-TNLFPFPSNPNTSLTNI--PFSFPIHKSPNFKTCVRGPGHKGC 60

Query: 61  XXXXXXXXXXXXXXXXXXGHNEQIALLESYTQAAAGEALIVHAALDGDLVEVLVFKGFSS 120
               XXXXXXXXXXXXXX  N+QIALLESYTQAA GEALIVHA +DG+ VEVLVFKGFSS
Sbjct: 61  AARRXXXXXXXXXXXXXXXXNDQIALLESYTQAATGEALIVHAMVDGEHVEVLVFKGFSS 120

Query: 121 CLSYATSSDPSRSVLPARATIQSIDRIKGPFDPSNIEYIERGITWESFNFP 172
           CLSY TS DPSRSV+P RATI+SIDRIKGPFDPSNI+YIE+GITW SFNFP
Sbjct: 121 CLSYGTSPDPSRSVVPERATIKSIDRIKGPFDPSNIQYIEKGITWNSFNFP 168

BLAST of Carg00140 vs. NCBI nr
Match: XP_022146835.1 (uncharacterized protein LOC111015943 [Momordica charantia])

HSP 1 Score: 182.2 bits (461), Expect = 1.5e-42
Identity = 103/171 (60.23%), Postives = 115/171 (67.25%), Query Frame = 0

Query: 1   MANHLQTSPILHSDSLPTVLRPFSGDLNTTPTKITSSFSFTIHDSLNFRARXXXXXXXXX 60
           MAN L+ S I  SDSLP    PFSG+ NT  +      S  +  SLN RA+         
Sbjct: 1   MANLLRKSLIQCSDSLP----PFSGNPNTNTSLAGICLSSAVGQSLNLRAQ--RLRRRYD 60

Query: 61  XXXXXXXXXXXXXXXXXXGHNEQIALLESYTQAAAGEALIVHAALDGDLVEVLVFKGFSS 120
                             GHNEQ+A LESYTQAA GEALIVHAA+ G+ VEVL+FKGFSS
Sbjct: 61  CPARRRVRFEDEGEDEDYGHNEQVARLESYTQAAVGEALIVHAAVGGENVEVLIFKGFSS 120

Query: 121 CLSYATSSDPSRSVLPARATIQSIDRIKGPFDPSNIEYIERGITWESFNFP 172
           CLSYATS DPSRSVLPARA I+SIDRIKGPFDPSNIEY+E+GITWESFNFP
Sbjct: 121 CLSYATSPDPSRSVLPARAVIKSIDRIKGPFDPSNIEYLEKGITWESFNFP 165

BLAST of Carg00140 vs. TAIR10
Match: AT2G01755.1 (unknown protein)

HSP 1 Score: 110.5 bits (275), Expect = 1.0e-24
Identity = 52/90 (57.78%), Postives = 71/90 (78.89%), Query Frame = 0

Query: 79  GHNEQIALLESYTQAAAGEALIVHAALDGDLVEVLVFKGFSSCLSYATSSDPSRSVLPAR 138
           G+NE++A+LE Y+Q+   EALIV A +D + VEV++FKG SSCLS  T+ DP+RSVLP R
Sbjct: 78  GYNEEMAMLEIYSQSCREEALIVTAIVDDEEVEVVIFKGVSSCLSGETAVDPARSVLPER 137

Query: 139 ATIQSIDRIKGPFDPSNIEYIERGITWESF 169
           A I  IDR++GPFDPS I YI+R I++++F
Sbjct: 138 AVITKIDRVRGPFDPSQIHYIQRDISFQAF 167

BLAST of Carg00140 vs. TrEMBL
Match: tr|A0A1S3BTQ8|A0A1S3BTQ8_CUCME (uncharacterized protein LOC103493452 OS=Cucumis melo OX=3656 GN=LOC103493452 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 2.0e-43
Identity = 117/171 (68.42%), Postives = 130/171 (76.02%), Query Frame = 0

Query: 1   MANHLQTSPILHSDSLPTVLRPFSGDLNTTPTKITSSFSFTIHDSLNFRARXXXXXXXXX 60
           MA +L  +PILHS+SL T L PF  + NT+ T I   FSF IH S NF+           
Sbjct: 1   MATNLHKTPILHSNSL-TNLFPFPSNPNTSLTNI--PFSFPIHKSPNFKTCVRGPGHKGC 60

Query: 61  XXXXXXXXXXXXXXXXXXGHNEQIALLESYTQAAAGEALIVHAALDGDLVEVLVFKGFSS 120
               XXXXXXXXXXXXXX  N+QIALLESYTQAA GEALIVHA +DG+ VEVLVFKGFSS
Sbjct: 61  AARRXXXXXXXXXXXXXXXXNDQIALLESYTQAATGEALIVHAMVDGEHVEVLVFKGFSS 120

Query: 121 CLSYATSSDPSRSVLPARATIQSIDRIKGPFDPSNIEYIERGITWESFNFP 172
           CLSY TS DPSRSV+P RATI+SIDRIKGPFDPSNI+YIE+GITW SFNFP
Sbjct: 121 CLSYGTSPDPSRSVVPERATIKSIDRIKGPFDPSNIQYIEKGITWNSFNFP 168

BLAST of Carg00140 vs. TrEMBL
Match: tr|A0A0A0KJ82|A0A0A0KJ82_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G021310 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.9e-33
Identity = 112/172 (65.12%), Postives = 122/172 (70.93%), Query Frame = 0

Query: 1   MANHLQTSPILHSDSLPTVLRPFSGDLNTTPTKITSSFSF-TIHDSLNFR-ARXXXXXXX 60
           MA +   +PILHS SL T L P     N  P+   + FSF  IH S NF+          
Sbjct: 1   MATNFHKTPILHSISL-TNLFPILPS-NPKPSLTNTPFSFPLIHKSPNFKTCLPRPGPNR 60

Query: 61  XXXXXXXXXXXXXXXXXXXXGHNEQIALLESYTQAAAGEALIVHAALDGDLVEVLVFKGF 120
             XXXXXXXXXXXXXXXXXX     IALLESYTQAA GEALIVHA +DGD VEVLVFKGF
Sbjct: 61  CAXXXXXXXXXXXXXXXXXXXXXXXIALLESYTQAATGEALIVHAMVDGDHVEVLVFKGF 120

Query: 121 SSCLSYATSSDPSRSVLPARATIQSIDRIKGPFDPSNIEYIERGITWESFNF 171
           SS LSY TS DPSRSVLP RA I+ IDRIKGPFDPSNI+YI++GITW SFNF
Sbjct: 121 SSSLSYGTSPDPSRSVLPERAIIKFIDRIKGPFDPSNIQYIQKGITWNSFNF 170

BLAST of Carg00140 vs. TrEMBL
Match: tr|A0A1S3VPT1|A0A1S3VPT1_VIGRR (uncharacterized protein LOC106777331 OS=Vigna radiata var. radiata OX=3916 GN=LOC106777331 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.1e-30
Identity = 63/90 (70.00%), Postives = 79/90 (87.78%), Query Frame = 0

Query: 79  GHNEQIALLESYTQAAAGEALIVHAALDGDLVEVLVFKGFSSCLSYATSSDPSRSVLPAR 138
           GHNE+I  LE YTQ+A GEAL+VHA +D + VE+L+FKGFSSCLSY+TS DP+RS++PAR
Sbjct: 78  GHNEEITKLEIYTQSAKGEALLVHALVDQEEVELLIFKGFSSCLSYSTSPDPTRSIVPAR 137

Query: 139 ATIQSIDRIKGPFDPSNIEYIERGITWESF 169
           A I SIDR+KGPFDPSNIEY+++G+TWE F
Sbjct: 138 AVIVSIDRVKGPFDPSNIEYLQKGVTWEGF 167

BLAST of Carg00140 vs. TrEMBL
Match: tr|A0A0L9UUN4|A0A0L9UUN4_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan06g156500 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.1e-30
Identity = 63/90 (70.00%), Postives = 79/90 (87.78%), Query Frame = 0

Query: 79  GHNEQIALLESYTQAAAGEALIVHAALDGDLVEVLVFKGFSSCLSYATSSDPSRSVLPAR 138
           GHNE+I  LE YTQ+A GEAL+VHA +D + VE+L+FKGFSSCLSY+TS DP+RS++PAR
Sbjct: 69  GHNEEITKLEIYTQSAKGEALLVHALVDQEEVELLIFKGFSSCLSYSTSPDPTRSIVPAR 128

Query: 139 ATIQSIDRIKGPFDPSNIEYIERGITWESF 169
           A I SIDR+KGPFDPSNIEY+++G+TWE F
Sbjct: 129 AVIVSIDRVKGPFDPSNIEYLQKGVTWEEF 158

BLAST of Carg00140 vs. TrEMBL
Match: tr|A0A0S3T1Y2|A0A0S3T1Y2_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.10G022500 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.1e-30
Identity = 63/90 (70.00%), Postives = 79/90 (87.78%), Query Frame = 0

Query: 79  GHNEQIALLESYTQAAAGEALIVHAALDGDLVEVLVFKGFSSCLSYATSSDPSRSVLPAR 138
           GHNE+I  LE YTQ+A GEAL+VHA +D + VE+L+FKGFSSCLSY+TS DP+RS++PAR
Sbjct: 76  GHNEEITKLEIYTQSAKGEALLVHALVDQEEVELLIFKGFSSCLSYSTSPDPTRSIVPAR 135

Query: 139 ATIQSIDRIKGPFDPSNIEYIERGITWESF 169
           A I SIDR+KGPFDPSNIEY+++G+TWE F
Sbjct: 136 AVIVSIDRVKGPFDPSNIEYLQKGVTWEEF 165

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022942665.16.5e-7087.13uncharacterized protein LOC111447634 [Cucurbita moschata][more]
XP_022985163.13.7e-5787.72uncharacterized protein LOC111483247 [Cucurbita maxima][more]
XP_023550628.11.1e-4882.35uncharacterized protein LOC111808712 [Cucurbita pepo subsp. pepo][more]
XP_008452414.13.0e-4368.42PREDICTED: uncharacterized protein LOC103493452 [Cucumis melo][more]
XP_022146835.11.5e-4260.23uncharacterized protein LOC111015943 [Momordica charantia][more]
Match NameE-valueIdentityDescription
AT2G01755.11.0e-2457.78unknown protein[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A1S3BTQ8|A0A1S3BTQ8_CUCME2.0e-4368.42uncharacterized protein LOC103493452 OS=Cucumis melo OX=3656 GN=LOC103493452 PE=... [more]
tr|A0A0A0KJ82|A0A0A0KJ82_CUCSA1.9e-3365.12Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G021310 PE=4 SV=1[more]
tr|A0A1S3VPT1|A0A1S3VPT1_VIGRR1.1e-3070.00uncharacterized protein LOC106777331 OS=Vigna radiata var. radiata OX=3916 GN=LO... [more]
tr|A0A0L9UUN4|A0A0L9UUN4_PHAAN1.1e-3070.00Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan06g156500 PE... [more]
tr|A0A0S3T1Y2|A0A0S3T1Y2_PHAAN1.1e-3070.00Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.10G... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg00140-RACarg00140-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36729FAMILY NOT NAMEDcoord: 44..168