CmaCh04G010330 (gene) Cucurbita maxima (Rimu)

NameCmaCh04G010330
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionNADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial
LocationCma_Chr04 : 5362285 .. 5363047 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGAGCTTGACCTTATCTCGAAAGGCCGAAATTCCGCCCTCATCGCATTTCTTTCAAAAACAAAATGGCGAACCACCTCCAAACATCCCCAATCCTTCACTCCGATTCTCTCCCCACCGTTCTCCGGCCATTTTCCGGCGACCTAAACACAACTCCAACCAAAATCTCTTTCTCTTTCTCTTTCACAATCCACGATTCGCTAAATTTCAGACCTCGCCGTCGCCAACGCCCTAACGATTGCGCTGCTCGGCGGAGAGTCCGATACGATGATGAAGAAGATGAAGATGAAGAGTATGGCCACAATGAACAGATTTCGCTGCTGGAATCCTACACTCAGGCCGCCGCCGGCGAGGCGCTGATCGTTCACGCGGCGCTCGATGGCGACCTTGTTGAAGTTCTCGTTTTCAAGGTTTTTCTTCGTTTCTTTAAATTTAGGGTTTAGGTTAGATTAAAATTTTTAATTGAGAATGAGATGTAAAATTGGACAGGGATTCTCATCATGCTTGAGCTATGCGACTTCATCTGATCCATCCAGAAGTGTTCTTCCAGCAAGAGCAACGATTCAATCCATTGATAGAATCAAGGGCCCATTTGATCCATCAAATATCGAATACATTCAGAAGGGTGTCACTTGGGAATCATTCAACTTCCCTACATAGCTCAATACCATACCATTCGTTCTTACAACCATCATTGTGTTAATTAATTGAATATCATTTCATTACTTCAATTTTATCAAATCCTCTCGGCAGGTTTAAATTTTA

mRNA sequence

AGAGCTTGACCTTATCTCGAAAGGCCGAAATTCCGCCCTCATCGCATTTCTTTCAAAAACAAAATGGCGAACCACCTCCAAACATCCCCAATCCTTCACTCCGATTCTCTCCCCACCGTTCTCCGGCCATTTTCCGGCGACCTAAACACAACTCCAACCAAAATCTCTTTCTCTTTCTCTTTCACAATCCACGATTCGCTAAATTTCAGACCTCGCCGTCGCCAACGCCCTAACGATTGCGCTGCTCGGCGGAGAGTCCGATACGATGATGAAGAAGATGAAGATGAAGAGTATGGCCACAATGAACAGATTTCGCTGCTGGAATCCTACACTCAGGCCGCCGCCGGCGAGGCGCTGATCGTTCACGCGGCGCTCGATGGCGACCTTGTTGAAGTTCTCGTTTTCAAGGGATTCTCATCATGCTTGAGCTATGCGACTTCATCTGATCCATCCAGAAGTGTTCTTCCAGCAAGAGCAACGATTCAATCCATTGATAGAATCAAGGGCCCATTTGATCCATCAAATATCGAATACATTCAGAAGGGTGTCACTTGGGAATCATTCAACTTCCCTACATAGCTCAATACCATACCATTCGTTCTTACAACCATCATTGTGTTAATTAATTGAATATCATTTCATTACTTCAATTTTATCAAATCCTCTCGGCAGGTTTAAATTTTA

Coding sequence (CDS)

ATGGCGAACCACCTCCAAACATCCCCAATCCTTCACTCCGATTCTCTCCCCACCGTTCTCCGGCCATTTTCCGGCGACCTAAACACAACTCCAACCAAAATCTCTTTCTCTTTCTCTTTCACAATCCACGATTCGCTAAATTTCAGACCTCGCCGTCGCCAACGCCCTAACGATTGCGCTGCTCGGCGGAGAGTCCGATACGATGATGAAGAAGATGAAGATGAAGAGTATGGCCACAATGAACAGATTTCGCTGCTGGAATCCTACACTCAGGCCGCCGCCGGCGAGGCGCTGATCGTTCACGCGGCGCTCGATGGCGACCTTGTTGAAGTTCTCGTTTTCAAGGGATTCTCATCATGCTTGAGCTATGCGACTTCATCTGATCCATCCAGAAGTGTTCTTCCAGCAAGAGCAACGATTCAATCCATTGATAGAATCAAGGGCCCATTTGATCCATCAAATATCGAATACATTCAGAAGGGTGTCACTTGGGAATCATTCAACTTCCCTACATAG

Protein sequence

MANHLQTSPILHSDSLPTVLRPFSGDLNTTPTKISFSFSFTIHDSLNFRPRRRQRPNDCAARRRVRYDDEEDEDEEYGHNEQISLLESYTQAAAGEALIVHAALDGDLVEVLVFKGFSSCLSYATSSDPSRSVLPARATIQSIDRIKGPFDPSNIEYIQKGVTWESFNFPT
BLAST of CmaCh04G010330 vs. TrEMBL
Match: A0A0A0KJ82_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G021310 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 2.7e-50
Identity = 114/171 (66.67%), Postives = 127/171 (74.27%), Query Frame = 1

Query: 1   MANHLQTSPILHSDSLPTVLRPFSGDLNTTPTKISFSFSFTIHDSLNFRP-RRRQRPNDC 60
           MA +   +PILHS SL  +      +   + T   FSF   IH S NF+    R  PN C
Sbjct: 1   MATNFHKTPILHSISLTNLFPILPSNPKPSLTNTPFSFPL-IHKSPNFKTCLPRPGPNRC 60

Query: 61  AARRRVRY-DDEEDEDEEYGHNEQISLLESYTQAAAGEALIVHAALDGDLVEVLVFKGFS 120
           AARRRVRY DD+EDEDE+YGHN QI+LLESYTQAA GEALIVHA +DGD VEVLVFKGFS
Sbjct: 61  AARRRVRYDDDDEDEDEDYGHNHQIALLESYTQAATGEALIVHAMVDGDHVEVLVFKGFS 120

Query: 121 SCLSYATSSDPSRSVLPARATIQSIDRIKGPFDPSNIEYIQKGVTWESFNF 170
           S LSY TS DPSRSVLP RA I+ IDRIKGPFDPSNI+YIQKG+TW SFNF
Sbjct: 121 SSLSYGTSPDPSRSVLPERAIIKFIDRIKGPFDPSNIQYIQKGITWNSFNF 170

BLAST of CmaCh04G010330 vs. TrEMBL
Match: A0A151S584_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_028225 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 4.7e-39
Identity = 81/110 (73.64%), Postives = 96/110 (87.27%), Query Frame = 1

Query: 59  CAARRRVRYDDE-EDEDEEYGHNEQISLLESYTQAAAGEALIVHAALDGDLVEVLVFKGF 118
           CAARR++RY DE ED DEEYGHNE+I+ LE Y+Q A GEALIVHA +D + V+VL+FKGF
Sbjct: 52  CAARRQIRYQDEDEDSDEEYGHNEEIAKLEFYSQTAKGEALIVHALVDHEEVDVLIFKGF 111

Query: 119 SSCLSYATSSDPSRSVLPARATIQSIDRIKGPFDPSNIEYIQKGVTWESF 168
           SSCLSY+T SDP+RS+LPARA I SIDRI+GPFDP+NIEY+QKGVTWE F
Sbjct: 112 SSCLSYSTISDPTRSILPARAVIMSIDRIRGPFDPANIEYLQKGVTWEEF 161

BLAST of CmaCh04G010330 vs. TrEMBL
Match: V7C4Y9_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G017900g PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 8.0e-39
Identity = 88/156 (56.41%), Postives = 112/156 (71.79%), Query Frame = 1

Query: 13  SDSLPTVLRPFSGDLNTTPTKISFSFSFTIHDSLNFRPRRRQRPNDCAARRRVRY-DDEE 72
           S  LPT L    G+ +T  + + ++F          R         C+ARR++RY D+EE
Sbjct: 21  SPMLPTPLPSSLGNTSTHNSSLCYAFKDVDLSKRGIRLL-------CSARRQIRYQDEEE 80

Query: 73  DEDEEYGHNEQISLLESYTQAAAGEALIVHAALDGDLVEVLVFKGFSSCLSYATSSDPSR 132
           D DEEYGHNE+I+ LE Y+Q+A GEAL+VHA LD + VE+L+FKGFSSCLSY+TS DP+R
Sbjct: 81  DRDEEYGHNEEITKLEIYSQSAKGEALLVHALLDQEEVELLIFKGFSSCLSYSTSPDPTR 140

Query: 133 SVLPARATIQSIDRIKGPFDPSNIEYIQKGVTWESF 168
           S+LPARA I SIDR+KGP DP+NIEY+QKGVTWE F
Sbjct: 141 SILPARAVIVSIDRVKGPLDPANIEYLQKGVTWEEF 169

BLAST of CmaCh04G010330 vs. TrEMBL
Match: B9T4M8_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0053580 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.8e-38
Identity = 79/111 (71.17%), Postives = 99/111 (89.19%), Query Frame = 1

Query: 59  CAARRRVRYDDE--EDEDEEYGHNEQISLLESYTQAAAGEALIVHAALDGDLVEVLVFKG 118
           C+ARRRVRY+DE  +D+D+EYGHNE+I++LE Y+Q+A  EAL+VHAA+D    EVL+FKG
Sbjct: 39  CSARRRVRYEDENDDDDDDEYGHNEEIAILEFYSQSAREEALLVHAAVDEQEAEVLIFKG 98

Query: 119 FSSCLSYATSSDPSRSVLPARATIQSIDRIKGPFDPSNIEYIQKGVTWESF 168
           FSSCLSY TS DPS+SVLPARA I+SIDRIKGPFDPSNIEY++KG+TW++F
Sbjct: 99  FSSCLSYKTSPDPSKSVLPARAVIKSIDRIKGPFDPSNIEYLEKGLTWQAF 149

BLAST of CmaCh04G010330 vs. TrEMBL
Match: A0A151S594_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_028235 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 4.0e-38
Identity = 80/110 (72.73%), Postives = 95/110 (86.36%), Query Frame = 1

Query: 59  CAARRRVRYDDE-EDEDEEYGHNEQISLLESYTQAAAGEALIVHAALDGDLVEVLVFKGF 118
           CAARR++RY DE ED DEEYGHNE+I+ LE Y+Q A GEALIVHA +D + V+VL+FKGF
Sbjct: 52  CAARRQIRYQDEDEDSDEEYGHNEEIAKLEFYSQTAKGEALIVHALVDHEEVDVLIFKGF 111

Query: 119 SSCLSYATSSDPSRSVLPARATIQSIDRIKGPFDPSNIEYIQKGVTWESF 168
           SSCLSY+T SDP+RS+LPARA I SIDRI+GPF P+NIEY+QKGVTWE F
Sbjct: 112 SSCLSYSTISDPTRSILPARAVIMSIDRIRGPFAPANIEYLQKGVTWEEF 161

BLAST of CmaCh04G010330 vs. TAIR10
Match: AT2G01755.1 (AT2G01755.1 unknown protein)

HSP 1 Score: 125.6 bits (314), Expect = 3.0e-29
Identity = 63/110 (57.27%), Postives = 85/110 (77.27%), Query Frame = 1

Query: 59  CAARRRVRYDDE-EDEDEEYGHNEQISLLESYTQAAAGEALIVHAALDGDLVEVLVFKGF 118
           C ARRRVR +   EDEDE YG+NE++++LE Y+Q+   EALIV A +D + VEV++FKG 
Sbjct: 58  CGARRRVRDEGGGEDEDEMYGYNEEMAMLEIYSQSCREEALIVTAIVDDEEVEVVIFKGV 117

Query: 119 SSCLSYATSSDPSRSVLPARATIQSIDRIKGPFDPSNIEYIQKGVTWESF 168
           SSCLS  T+ DP+RSVLP RA I  IDR++GPFDPS I YIQ+ +++++F
Sbjct: 118 SSCLSGETAVDPARSVLPERAVITKIDRVRGPFDPSQIHYIQRDISFQAF 167

BLAST of CmaCh04G010330 vs. NCBI nr
Match: gi|659102980|ref|XP_008452414.1| (PREDICTED: uncharacterized protein LOC103493452 [Cucumis melo])

HSP 1 Score: 226.1 bits (575), Expect = 4.7e-56
Identity = 121/171 (70.76%), Postives = 138/171 (80.70%), Query Frame = 1

Query: 1   MANHLQTSPILHSDSLPTVLRPFSGDLNTTPTKISFSFSFTIHDSLNFRPR-RRQRPNDC 60
           MA +L  +PILHS+SL T L PF  + NT+ T I FSF   IH S NF+   R      C
Sbjct: 1   MATNLHKTPILHSNSL-TNLFPFPSNPNTSLTNIPFSFP--IHKSPNFKTCVRGPGHKGC 60

Query: 61  AARRRVRYDDEEDEDEEYGHNEQISLLESYTQAAAGEALIVHAALDGDLVEVLVFKGFSS 120
           AARRRVRYDD+EDEDE+YGHN+QI+LLESYTQAA GEALIVHA +DG+ VEVLVFKGFSS
Sbjct: 61  AARRRVRYDDDEDEDEDYGHNDQIALLESYTQAATGEALIVHAMVDGEHVEVLVFKGFSS 120

Query: 121 CLSYATSSDPSRSVLPARATIQSIDRIKGPFDPSNIEYIQKGVTWESFNFP 171
           CLSY TS DPSRSV+P RATI+SIDRIKGPFDPSNI+YI+KG+TW SFNFP
Sbjct: 121 CLSYGTSPDPSRSVVPERATIKSIDRIKGPFDPSNIQYIEKGITWNSFNFP 168

BLAST of CmaCh04G010330 vs. NCBI nr
Match: gi|778698045|ref|XP_004142303.2| (PREDICTED: uncharacterized protein LOC101213440 [Cucumis sativus])

HSP 1 Score: 206.5 bits (524), Expect = 3.8e-50
Identity = 114/171 (66.67%), Postives = 127/171 (74.27%), Query Frame = 1

Query: 1   MANHLQTSPILHSDSLPTVLRPFSGDLNTTPTKISFSFSFTIHDSLNFRP-RRRQRPNDC 60
           MA +   +PILHS SL  +      +   + T   FSF   IH S NF+    R  PN C
Sbjct: 1   MATNFHKTPILHSISLTNLFPILPSNPKPSLTNTPFSFPL-IHKSPNFKTCLPRPGPNRC 60

Query: 61  AARRRVRY-DDEEDEDEEYGHNEQISLLESYTQAAAGEALIVHAALDGDLVEVLVFKGFS 120
           AARRRVRY DD+EDEDE+YGHN QI+LLESYTQAA GEALIVHA +DGD VEVLVFKGFS
Sbjct: 61  AARRRVRYDDDDEDEDEDYGHNHQIALLESYTQAATGEALIVHAMVDGDHVEVLVFKGFS 120

Query: 121 SCLSYATSSDPSRSVLPARATIQSIDRIKGPFDPSNIEYIQKGVTWESFNF 170
           S LSY TS DPSRSVLP RA I+ IDRIKGPFDPSNI+YIQKG+TW SFNF
Sbjct: 121 SSLSYGTSPDPSRSVLPERAIIKFIDRIKGPFDPSNIQYIQKGITWNSFNF 170

BLAST of CmaCh04G010330 vs. NCBI nr
Match: gi|1009154839|ref|XP_015895389.1| (PREDICTED: uncharacterized protein LOC107429249 [Ziziphus jujuba])

HSP 1 Score: 175.6 bits (444), Expect = 7.2e-41
Identity = 97/171 (56.73%), Postives = 123/171 (71.93%), Query Frame = 1

Query: 1   MANHLQTSPILHSDSLPTVLRPFSGDLNTTPTKISFSFSFTIH-DSLNFRPRRRQRPNDC 60
           M NHL T  +L S S P     F+      P +++ S +++    +LN   + R     C
Sbjct: 1   MLNHLGTRSLLSSYSTPVFA--FALRQTVPPNRLNNSTNYSFQAQNLN---QVRVLSTPC 60

Query: 61  AARRRVRYDD---EEDEDEEYGHNEQISLLESYTQAAAGEALIVHAALDGDLVEVLVFKG 120
           AARRRVRY++   EED+ EEYGHNE+IS+LE Y+Q A GEALIVHA +D   VEVL+FKG
Sbjct: 61  AARRRVRYEEDGEEEDDGEEYGHNEEISMLEMYSQNARGEALIVHAIVDQQDVEVLIFKG 120

Query: 121 FSSCLSYATSSDPSRSVLPARATIQSIDRIKGPFDPSNIEYIQKGVTWESF 168
           FSSCL+Y TS DPS+S+LPARA I+SIDR+KGPFDPSNIEY+QKG+TWE+F
Sbjct: 121 FSSCLNYRTSPDPSKSILPARAVIKSIDRVKGPFDPSNIEYLQKGLTWEAF 166

BLAST of CmaCh04G010330 vs. NCBI nr
Match: gi|951051199|ref|XP_014520391.1| (PREDICTED: uncharacterized protein LOC106777331 [Vigna radiata var. radiata])

HSP 1 Score: 174.9 bits (442), Expect = 1.2e-40
Identity = 90/148 (60.81%), Postives = 113/148 (76.35%), Query Frame = 1

Query: 22  PFSGDLNTTPTKISFSFSFTIHDSLNFRPRRRQRPNDCAARRRVRYDDEED--EDEEYGH 81
           PF   L  T T    S  F++ D   F  R+R R   C+ARR++RY DE++  +DEEYGH
Sbjct: 23  PFPSSLANTSTHNYSSLCFSLKD---FDLRKRGRTVLCSARRQIRYQDEDEDRDDEEYGH 82

Query: 82  NEQISLLESYTQAAAGEALIVHAALDGDLVEVLVFKGFSSCLSYATSSDPSRSVLPARAT 141
           NE+I+ LE YTQ+A GEAL+VHA +D + VE+L+FKGFSSCLSY+TS DP+RS++PARA 
Sbjct: 83  NEEITKLEIYTQSAKGEALLVHALVDQEEVELLIFKGFSSCLSYSTSPDPTRSIVPARAV 142

Query: 142 IQSIDRIKGPFDPSNIEYIQKGVTWESF 168
           I SIDR+KGPFDPSNIEY+QKGVTWE F
Sbjct: 143 IVSIDRVKGPFDPSNIEYLQKGVTWEGF 167

BLAST of CmaCh04G010330 vs. NCBI nr
Match: gi|1012338739|gb|KYP49985.1| (hypothetical protein KK1_028225 [Cajanus cajan])

HSP 1 Score: 169.1 bits (427), Expect = 6.8e-39
Identity = 81/110 (73.64%), Postives = 96/110 (87.27%), Query Frame = 1

Query: 59  CAARRRVRYDDE-EDEDEEYGHNEQISLLESYTQAAAGEALIVHAALDGDLVEVLVFKGF 118
           CAARR++RY DE ED DEEYGHNE+I+ LE Y+Q A GEALIVHA +D + V+VL+FKGF
Sbjct: 52  CAARRQIRYQDEDEDSDEEYGHNEEIAKLEFYSQTAKGEALIVHALVDHEEVDVLIFKGF 111

Query: 119 SSCLSYATSSDPSRSVLPARATIQSIDRIKGPFDPSNIEYIQKGVTWESF 168
           SSCLSY+T SDP+RS+LPARA I SIDRI+GPFDP+NIEY+QKGVTWE F
Sbjct: 112 SSCLSYSTISDPTRSILPARAVIMSIDRIRGPFDPANIEYLQKGVTWEEF 161

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KJ82_CUCSA2.7e-5066.67Uncharacterized protein OS=Cucumis sativus GN=Csa_5G021310 PE=4 SV=1[more]
A0A151S584_CAJCA4.7e-3973.64Uncharacterized protein OS=Cajanus cajan GN=KK1_028225 PE=4 SV=1[more]
V7C4Y9_PHAVU8.0e-3956.41Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G017900g PE=4 SV=1[more]
B9T4M8_RICCO1.8e-3871.17Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0053580 PE=4 SV=1[more]
A0A151S594_CAJCA4.0e-3872.73Uncharacterized protein OS=Cajanus cajan GN=KK1_028235 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G01755.13.0e-2957.27 unknown protein[more]
Match NameE-valueIdentityDescription
gi|659102980|ref|XP_008452414.1|4.7e-5670.76PREDICTED: uncharacterized protein LOC103493452 [Cucumis melo][more]
gi|778698045|ref|XP_004142303.2|3.8e-5066.67PREDICTED: uncharacterized protein LOC101213440 [Cucumis sativus][more]
gi|1009154839|ref|XP_015895389.1|7.2e-4156.73PREDICTED: uncharacterized protein LOC107429249 [Ziziphus jujuba][more]
gi|951051199|ref|XP_014520391.1|1.2e-4060.81PREDICTED: uncharacterized protein LOC106777331 [Vigna radiata var. radiata][more]
gi|1012338739|gb|KYP49985.1|6.8e-3973.64hypothetical protein KK1_028225 [Cajanus cajan][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0009507 chloroplast
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G010330.1CmaCh04G010330.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36729FAMILY NOT NAMEDcoord: 1..167
score: 5.9