CmoCh04G011040 (gene) Cucurbita moschata (Rifu)

NameCmoCh04G011040
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionNADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial
LocationCmo_Chr04 : 5632211 .. 5632954 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAGGTCGAAATTCCGCCCTCCTCGCATTTCTTTCAAAATGGCGAACCACCTCCAAACATCCCCAATTCTTCACTCCGATTCTCTCCCCACCGTTCTCCGGCCATTTTCCGGCGACCTAAACACAACTCCAACCAAAATCACTTTCTCTTTCTCTTTCACAATCCACGATTCGCTAAATTTCAGAGCTCGCCGCCGCCCCCAACGCCTTAACGATTGCGCTGCTCGGCGGAGAGTCCGATACGATGATGAAGAAGATGAAGATGAAGAGTATGGCCACAATGAACAGATTGCGCTTCTGGAATCCTACACTCAGGCCGCCGCCGGCGAGGCGCTGATCGTTCACGCGGCGCTCGATGGCGACCTCGTTGAAGTTCTCGTCTTCAAGGTTTTTCTTCGTTTCTTTAAATTTAGGATTTAGGTTAGATTAAAAATTTTAATTGAGAATGAGATGTAAAATTGGACAGGGATTCTCATCATGCTTGAGCTTTGCGACTTCATCTGATCCATCCAGAAGTGTTCTTCCAGCAAGAGCAACGATTCAATCCATTGATAGAATCAAGGGCCCATTTGATCCATCAAATATCGAATACATTCAGAGGGGTATCACTTGGGAATCATTCAACTTCCCTACATAGCTTAATATCATACCCTTCGTTCTTACAACCATCATTGTGTTAATTAATTGAATATCATTTCATTACTTCAATTTTCTTACCTTCAATTTTATCAAATCCTCTCGGCAG

mRNA sequence

AAAGGTCGAAATTCCGCCCTCCTCGCATTTCTTTCAAAATGGCGAACCACCTCCAAACATCCCCAATTCTTCACTCCGATTCTCTCCCCACCGTTCTCCGGCCATTTTCCGGCGACCTAAACACAACTCCAACCAAAATCACTTTCTCTTTCTCTTTCACAATCCACGATTCGCTAAATTTCAGAGCTCGCCGCCGCCCCCAACGCCTTAACGATTGCGCTGCTCGGCGGAGAGTCCGATACGATGATGAAGAAGATGAAGATGAAGAGTATGGCCACAATGAACAGATTGCGCTTCTGGAATCCTACACTCAGGCCGCCGCCGGCGAGGCGCTGATCGTTCACGCGGCGCTCGATGGCGACCTCGTTGAAGTTCTCGTCTTCAAGGGATTCTCATCATGCTTGAGCTTTGCGACTTCATCTGATCCATCCAGAAGTGTTCTTCCAGCAAGAGCAACGATTCAATCCATTGATAGAATCAAGGGCCCATTTGATCCATCAAATATCGAATACATTCAGAGGGGTATCACTTGGGAATCATTCAACTTCCCTACATAGCTTAATATCATACCCTTCGTTCTTACAACCATCATTGTGTTAATTAATTGAATATCATTTCATTACTTCAATTTTCTTACCTTCAATTTTATCAAATCCTCTCGGCAG

Coding sequence (CDS)

ATGGCGAACCACCTCCAAACATCCCCAATTCTTCACTCCGATTCTCTCCCCACCGTTCTCCGGCCATTTTCCGGCGACCTAAACACAACTCCAACCAAAATCACTTTCTCTTTCTCTTTCACAATCCACGATTCGCTAAATTTCAGAGCTCGCCGCCGCCCCCAACGCCTTAACGATTGCGCTGCTCGGCGGAGAGTCCGATACGATGATGAAGAAGATGAAGATGAAGAGTATGGCCACAATGAACAGATTGCGCTTCTGGAATCCTACACTCAGGCCGCCGCCGGCGAGGCGCTGATCGTTCACGCGGCGCTCGATGGCGACCTCGTTGAAGTTCTCGTCTTCAAGGGATTCTCATCATGCTTGAGCTTTGCGACTTCATCTGATCCATCCAGAAGTGTTCTTCCAGCAAGAGCAACGATTCAATCCATTGATAGAATCAAGGGCCCATTTGATCCATCAAATATCGAATACATTCAGAGGGGTATCACTTGGGAATCATTCAACTTCCCTACATAG
BLAST of CmoCh04G011040 vs. TrEMBL
Match: A0A0A0KJ82_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G021310 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 3.9e-49
Identity = 112/171 (65.50%), Postives = 125/171 (73.10%), Query Frame = 1

Query: 1   MANHLQTSPILHSDSLPTVLRPFSGDLNTTPTKITFSFSFTIHDSLNFRARRRPQRLNDC 60
           MA +   +PILHS SL  +      +   + T   FSF   IH S NF+        N C
Sbjct: 1   MATNFHKTPILHSISLTNLFPILPSNPKPSLTNTPFSFPL-IHKSPNFKTCLPRPGPNRC 60

Query: 61  AARRRVRY-DDEEDEDEEYGHNEQIALLESYTQAAAGEALIVHAALDGDLVEVLVFKGFS 120
           AARRRVRY DD+EDEDE+YGHN QIALLESYTQAA GEALIVHA +DGD VEVLVFKGFS
Sbjct: 61  AARRRVRYDDDDEDEDEDYGHNHQIALLESYTQAATGEALIVHAMVDGDHVEVLVFKGFS 120

Query: 121 SCLSFATSSDPSRSVLPARATIQSIDRIKGPFDPSNIEYIQRGITWESFNF 171
           S LS+ TS DPSRSVLP RA I+ IDRIKGPFDPSNI+YIQ+GITW SFNF
Sbjct: 121 SSLSYGTSPDPSRSVLPERAIIKFIDRIKGPFDPSNIQYIQKGITWNSFNF 170

BLAST of CmoCh04G011040 vs. TrEMBL
Match: A0A151S584_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_028225 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 3.1e-38
Identity = 78/110 (70.91%), Postives = 97/110 (88.18%), Query Frame = 1

Query: 60  CAARRRVRY-DDEEDEDEEYGHNEQIALLESYTQAAAGEALIVHAALDGDLVEVLVFKGF 119
           CAARR++RY D++ED DEEYGHNE+IA LE Y+Q A GEALIVHA +D + V+VL+FKGF
Sbjct: 52  CAARRQIRYQDEDEDSDEEYGHNEEIAKLEFYSQTAKGEALIVHALVDHEEVDVLIFKGF 111

Query: 120 SSCLSFATSSDPSRSVLPARATIQSIDRIKGPFDPSNIEYIQRGITWESF 169
           SSCLS++T SDP+RS+LPARA I SIDRI+GPFDP+NIEY+Q+G+TWE F
Sbjct: 112 SSCLSYSTISDPTRSILPARAVIMSIDRIRGPFDPANIEYLQKGVTWEEF 161

BLAST of CmoCh04G011040 vs. TrEMBL
Match: B9T4M8_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0053580 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 4.0e-38
Identity = 82/126 (65.08%), Postives = 103/126 (81.75%), Query Frame = 1

Query: 45  SLNFRARRRPQRLNDCAARRRVRYDDE--EDEDEEYGHNEQIALLESYTQAAAGEALIVH 104
           SL     R P     C+ARRRVRY+DE  +D+D+EYGHNE+IA+LE Y+Q+A  EAL+VH
Sbjct: 24  SLKLSRTRVPVSWLRCSARRRVRYEDENDDDDDDEYGHNEEIAILEFYSQSAREEALLVH 83

Query: 105 AALDGDLVEVLVFKGFSSCLSFATSSDPSRSVLPARATIQSIDRIKGPFDPSNIEYIQRG 164
           AA+D    EVL+FKGFSSCLS+ TS DPS+SVLPARA I+SIDRIKGPFDPSNIEY+++G
Sbjct: 84  AAVDEQEAEVLIFKGFSSCLSYKTSPDPSKSVLPARAVIKSIDRIKGPFDPSNIEYLEKG 143

Query: 165 ITWESF 169
           +TW++F
Sbjct: 144 LTWQAF 149

BLAST of CmoCh04G011040 vs. TrEMBL
Match: V7C4Y9_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G017900g PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 8.9e-38
Identity = 87/157 (55.41%), Postives = 115/157 (73.25%), Query Frame = 1

Query: 13  SDSLPTVLRPFSGDLNTTPTKITFSFSFTIHDSLNFRARRRPQRLNDCAARRRVRY-DDE 72
           S  LPT L    G+ +T  + + ++F        +    +R  RL  C+ARR++RY D+E
Sbjct: 21  SPMLPTPLPSSLGNTSTHNSSLCYAFK-------DVDLSKRGIRLL-CSARRQIRYQDEE 80

Query: 73  EDEDEEYGHNEQIALLESYTQAAAGEALIVHAALDGDLVEVLVFKGFSSCLSFATSSDPS 132
           ED DEEYGHNE+I  LE Y+Q+A GEAL+VHA LD + VE+L+FKGFSSCLS++TS DP+
Sbjct: 81  EDRDEEYGHNEEITKLEIYSQSAKGEALLVHALLDQEEVELLIFKGFSSCLSYSTSPDPT 140

Query: 133 RSVLPARATIQSIDRIKGPFDPSNIEYIQRGITWESF 169
           RS+LPARA I SIDR+KGP DP+NIEY+Q+G+TWE F
Sbjct: 141 RSILPARAVIVSIDRVKGPLDPANIEYLQKGVTWEEF 169

BLAST of CmoCh04G011040 vs. TrEMBL
Match: A0A151S594_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_028235 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 2.6e-37
Identity = 77/110 (70.00%), Postives = 96/110 (87.27%), Query Frame = 1

Query: 60  CAARRRVRY-DDEEDEDEEYGHNEQIALLESYTQAAAGEALIVHAALDGDLVEVLVFKGF 119
           CAARR++RY D++ED DEEYGHNE+IA LE Y+Q A GEALIVHA +D + V+VL+FKGF
Sbjct: 52  CAARRQIRYQDEDEDSDEEYGHNEEIAKLEFYSQTAKGEALIVHALVDHEEVDVLIFKGF 111

Query: 120 SSCLSFATSSDPSRSVLPARATIQSIDRIKGPFDPSNIEYIQRGITWESF 169
           SSCLS++T SDP+RS+LPARA I SIDRI+GPF P+NIEY+Q+G+TWE F
Sbjct: 112 SSCLSYSTISDPTRSILPARAVIMSIDRIRGPFAPANIEYLQKGVTWEEF 161

BLAST of CmoCh04G011040 vs. TAIR10
Match: AT2G01755.1 (AT2G01755.1 unknown protein)

HSP 1 Score: 130.2 bits (326), Expect = 1.2e-30
Identity = 69/119 (57.98%), Postives = 90/119 (75.63%), Query Frame = 1

Query: 51  RRRPQRLNDCAARRRVRYDDE-EDEDEEYGHNEQIALLESYTQAAAGEALIVHAALDGDL 110
           RRR  ++  C ARRRVR +   EDEDE YG+NE++A+LE Y+Q+   EALIV A +D + 
Sbjct: 49  RRRALKMFWCGARRRVRDEGGGEDEDEMYGYNEEMAMLEIYSQSCREEALIVTAIVDDEE 108

Query: 111 VEVLVFKGFSSCLSFATSSDPSRSVLPARATIQSIDRIKGPFDPSNIEYIQRGITWESF 169
           VEV++FKG SSCLS  T+ DP+RSVLP RA I  IDR++GPFDPS I YIQR I++++F
Sbjct: 109 VEVVIFKGVSSCLSGETAVDPARSVLPERAVITKIDRVRGPFDPSQIHYIQRDISFQAF 167

BLAST of CmoCh04G011040 vs. NCBI nr
Match: gi|659102980|ref|XP_008452414.1| (PREDICTED: uncharacterized protein LOC103493452 [Cucumis melo])

HSP 1 Score: 228.8 bits (582), Expect = 7.2e-57
Identity = 121/171 (70.76%), Postives = 138/171 (80.70%), Query Frame = 1

Query: 1   MANHLQTSPILHSDSLPTVLRPFSGDLNTTPTKITFSFSFTIHDSLNFRARRRPQRLNDC 60
           MA +L  +PILHS+SL T L PF  + NT+ T I FSF   IH S NF+   R      C
Sbjct: 1   MATNLHKTPILHSNSL-TNLFPFPSNPNTSLTNIPFSFP--IHKSPNFKTCVRGPGHKGC 60

Query: 61  AARRRVRYDDEEDEDEEYGHNEQIALLESYTQAAAGEALIVHAALDGDLVEVLVFKGFSS 120
           AARRRVRYDD+EDEDE+YGHN+QIALLESYTQAA GEALIVHA +DG+ VEVLVFKGFSS
Sbjct: 61  AARRRVRYDDDEDEDEDYGHNDQIALLESYTQAATGEALIVHAMVDGEHVEVLVFKGFSS 120

Query: 121 CLSFATSSDPSRSVLPARATIQSIDRIKGPFDPSNIEYIQRGITWESFNFP 172
           CLS+ TS DPSRSV+P RATI+SIDRIKGPFDPSNI+YI++GITW SFNFP
Sbjct: 121 CLSYGTSPDPSRSVVPERATIKSIDRIKGPFDPSNIQYIEKGITWNSFNFP 168

BLAST of CmoCh04G011040 vs. NCBI nr
Match: gi|778698045|ref|XP_004142303.2| (PREDICTED: uncharacterized protein LOC101213440 [Cucumis sativus])

HSP 1 Score: 202.6 bits (514), Expect = 5.6e-49
Identity = 112/171 (65.50%), Postives = 125/171 (73.10%), Query Frame = 1

Query: 1   MANHLQTSPILHSDSLPTVLRPFSGDLNTTPTKITFSFSFTIHDSLNFRARRRPQRLNDC 60
           MA +   +PILHS SL  +      +   + T   FSF   IH S NF+        N C
Sbjct: 1   MATNFHKTPILHSISLTNLFPILPSNPKPSLTNTPFSFPL-IHKSPNFKTCLPRPGPNRC 60

Query: 61  AARRRVRY-DDEEDEDEEYGHNEQIALLESYTQAAAGEALIVHAALDGDLVEVLVFKGFS 120
           AARRRVRY DD+EDEDE+YGHN QIALLESYTQAA GEALIVHA +DGD VEVLVFKGFS
Sbjct: 61  AARRRVRYDDDDEDEDEDYGHNHQIALLESYTQAATGEALIVHAMVDGDHVEVLVFKGFS 120

Query: 121 SCLSFATSSDPSRSVLPARATIQSIDRIKGPFDPSNIEYIQRGITWESFNF 171
           S LS+ TS DPSRSVLP RA I+ IDRIKGPFDPSNI+YIQ+GITW SFNF
Sbjct: 121 SSLSYGTSPDPSRSVLPERAIIKFIDRIKGPFDPSNIQYIQKGITWNSFNF 170

BLAST of CmoCh04G011040 vs. NCBI nr
Match: gi|1009154839|ref|XP_015895389.1| (PREDICTED: uncharacterized protein LOC107429249 [Ziziphus jujuba])

HSP 1 Score: 172.2 bits (435), Expect = 8.0e-40
Identity = 92/171 (53.80%), Postives = 117/171 (68.42%), Query Frame = 1

Query: 1   MANHLQTSPILHSDSLPTVLRPFSGDLNTTPTKITFSFSFTIHDSLNFRARRRPQRLNDC 60
           M NHL T  +L S S P         +       + ++SF   +    R    P     C
Sbjct: 1   MLNHLGTRSLLSSYSTPVFAFALRQTVPPNRLNNSTNYSFQAQNLNQVRVLSTP-----C 60

Query: 61  AARRRVRYDD---EEDEDEEYGHNEQIALLESYTQAAAGEALIVHAALDGDLVEVLVFKG 120
           AARRRVRY++   EED+ EEYGHNE+I++LE Y+Q A GEALIVHA +D   VEVL+FKG
Sbjct: 61  AARRRVRYEEDGEEEDDGEEYGHNEEISMLEMYSQNARGEALIVHAIVDQQDVEVLIFKG 120

Query: 121 FSSCLSFATSSDPSRSVLPARATIQSIDRIKGPFDPSNIEYIQRGITWESF 169
           FSSCL++ TS DPS+S+LPARA I+SIDR+KGPFDPSNIEY+Q+G+TWE+F
Sbjct: 121 FSSCLNYRTSPDPSKSILPARAVIKSIDRVKGPFDPSNIEYLQKGLTWEAF 166

BLAST of CmoCh04G011040 vs. NCBI nr
Match: gi|951051199|ref|XP_014520391.1| (PREDICTED: uncharacterized protein LOC106777331 [Vigna radiata var. radiata])

HSP 1 Score: 168.3 bits (425), Expect = 1.2e-38
Identity = 86/149 (57.72%), Postives = 113/149 (75.84%), Query Frame = 1

Query: 22  PFSGDLNTTPTKITFSFSFTIHDSLNFRARRRPQRLNDCAARRRVRYDDEED--EDEEYG 81
           PF   L  T T    S  F++ D   F  R+R + +  C+ARR++RY DE++  +DEEYG
Sbjct: 23  PFPSSLANTSTHNYSSLCFSLKD---FDLRKRGRTVL-CSARRQIRYQDEDEDRDDEEYG 82

Query: 82  HNEQIALLESYTQAAAGEALIVHAALDGDLVEVLVFKGFSSCLSFATSSDPSRSVLPARA 141
           HNE+I  LE YTQ+A GEAL+VHA +D + VE+L+FKGFSSCLS++TS DP+RS++PARA
Sbjct: 83  HNEEITKLEIYTQSAKGEALLVHALVDQEEVELLIFKGFSSCLSYSTSPDPTRSIVPARA 142

Query: 142 TIQSIDRIKGPFDPSNIEYIQRGITWESF 169
            I SIDR+KGPFDPSNIEY+Q+G+TWE F
Sbjct: 143 VIVSIDRVKGPFDPSNIEYLQKGVTWEGF 167

BLAST of CmoCh04G011040 vs. NCBI nr
Match: gi|1012338739|gb|KYP49985.1| (hypothetical protein KK1_028225 [Cajanus cajan])

HSP 1 Score: 166.4 bits (420), Expect = 4.4e-38
Identity = 78/110 (70.91%), Postives = 97/110 (88.18%), Query Frame = 1

Query: 60  CAARRRVRY-DDEEDEDEEYGHNEQIALLESYTQAAAGEALIVHAALDGDLVEVLVFKGF 119
           CAARR++RY D++ED DEEYGHNE+IA LE Y+Q A GEALIVHA +D + V+VL+FKGF
Sbjct: 52  CAARRQIRYQDEDEDSDEEYGHNEEIAKLEFYSQTAKGEALIVHALVDHEEVDVLIFKGF 111

Query: 120 SSCLSFATSSDPSRSVLPARATIQSIDRIKGPFDPSNIEYIQRGITWESF 169
           SSCLS++T SDP+RS+LPARA I SIDRI+GPFDP+NIEY+Q+G+TWE F
Sbjct: 112 SSCLSYSTISDPTRSILPARAVIMSIDRIRGPFDPANIEYLQKGVTWEEF 161

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KJ82_CUCSA3.9e-4965.50Uncharacterized protein OS=Cucumis sativus GN=Csa_5G021310 PE=4 SV=1[more]
A0A151S584_CAJCA3.1e-3870.91Uncharacterized protein OS=Cajanus cajan GN=KK1_028225 PE=4 SV=1[more]
B9T4M8_RICCO4.0e-3865.08Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0053580 PE=4 SV=1[more]
V7C4Y9_PHAVU8.9e-3855.41Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G017900g PE=4 SV=1[more]
A0A151S594_CAJCA2.6e-3770.00Uncharacterized protein OS=Cajanus cajan GN=KK1_028235 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G01755.11.2e-3057.98 unknown protein[more]
Match NameE-valueIdentityDescription
gi|659102980|ref|XP_008452414.1|7.2e-5770.76PREDICTED: uncharacterized protein LOC103493452 [Cucumis melo][more]
gi|778698045|ref|XP_004142303.2|5.6e-4965.50PREDICTED: uncharacterized protein LOC101213440 [Cucumis sativus][more]
gi|1009154839|ref|XP_015895389.1|8.0e-4053.80PREDICTED: uncharacterized protein LOC107429249 [Ziziphus jujuba][more]
gi|951051199|ref|XP_014520391.1|1.2e-3857.72PREDICTED: uncharacterized protein LOC106777331 [Vigna radiata var. radiata][more]
gi|1012338739|gb|KYP49985.1|4.4e-3870.91hypothetical protein KK1_028225 [Cajanus cajan][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0009507 chloroplast
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G011040.1CmoCh04G011040.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36729FAMILY NOT NAMEDcoord: 1..168
score: 1.5
NoneNo IPR availablePANTHERPTHR36729:SF1SUBFAMILY NOT NAMEDcoord: 1..168
score: 1.5