CSPI05G00550 (gene) Wild cucumber (PI 183967)

NameCSPI05G00550
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionNADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial
LocationChr5 : 752148 .. 753078 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAACAAAAATTATAAAACAAAAGTAGAGAGACTGAATAGCTTCCACCTTATCTGCAATGGTCAAAATTCCTCCACATTTTCCTTCAACTTTCATCCAACAAAACACATAATTCAAAACCAAAAATGGCAACAAACTTCCACAAAACCCCAATCCTTCACTCAATTTCTCTTACAAATCTCTTCCCAATACTTCCCACCAATCCAAAACCATCTCTCACCAACACCCCTTTCTCTTTCCCATTAATCCATAAATCACCCAATTTCAAAACTTGTCTCCCTCGCCCTGCCCCCAATGGTTGCGCTGCTCGGCGGAGAGTTCGTTACGACGACGAAGATGAAGATGAAGATTACGGCCACAACCATCAGATTGCACTGTTGGAATCCTACACTCAGGCCGCCACAGGAGAAGCACTCATCGTTCATGCCATGGTTGACGGTGACCATGTTGAAGTTCTTGTCTTCAAGGTTTTTCCTCTTTTCTGTTCAGAGATTTATGGTTTTGGTTAAATAATTAGAATATAATTTTTAGTAATGTTTAGTAGATAAAGAAGAAGAAGAGTTGTTAAAAACTGAAAAAGAATATAAACGGAGTAGAAAATGTGTGGAATGATTAATATTATATTTGTAGGGATTCTCATCAAGTTTGAGCTATGGGACATCACCTGATCCATCAAGAAGTGTTCTTCCCGAAAGAGCAATCATTAAATTCATTGATAGAATCAAAGGCCCATTTGATCCATCAAATATCCAATACATTCAGAAGGGTATCACTTGGAATTCATTTAACTTCCTCAATTAATTCATATCAACTTCTTTTCTTCCAATTCATTTTTACCATTTTCTTAACTTTAATCGCATCTCTCTTTTCTGACAAAACTTAGAATTTCAAACAATACCATAATGATCGGGAATCAAAATTCATACTTGAACA

mRNA sequence

ATGGCAACAAACTTCCACAAAACCCCAATCCTTCACTCAATTTCTCTTACAAATCTCTTCCCAATACTTCCCACCAATCCAAAACCATCTCTCACCAACACCCCTTTCTCTTTCCCATTAATCCATAAATCACCCAATTTCAAAACTTGTCTCCCTCGCCCTGCCCCCAATGGTTGCGCTGCTCGGCGGAGAGTTCGTTACGACGACGAAGATGAAGATGAAGATTACGGCCACAACCATCAGATTGCACTGTTGGAATCCTACACTCAGGCCGCCACAGGAGAAGCACTCATCGTTCATGCCATGGTTGACGGTGACCATGTTGAAGTTCTTGTCTTCAAGGGATTCTCATCAAGTTTGAGCTATGGGACATCACCTGATCCATCAAGAAGTGTTCTTCCCGAAAGAGCAATCATTAAATTCATTGATAGAATCAAAGGCCCATTTGATCCATCAAATATCCAATACATTCAGAAGGAATTTCAAACAATACCATAA

Coding sequence (CDS)

ATGGCAACAAACTTCCACAAAACCCCAATCCTTCACTCAATTTCTCTTACAAATCTCTTCCCAATACTTCCCACCAATCCAAAACCATCTCTCACCAACACCCCTTTCTCTTTCCCATTAATCCATAAATCACCCAATTTCAAAACTTGTCTCCCTCGCCCTGCCCCCAATGGTTGCGCTGCTCGGCGGAGAGTTCGTTACGACGACGAAGATGAAGATGAAGATTACGGCCACAACCATCAGATTGCACTGTTGGAATCCTACACTCAGGCCGCCACAGGAGAAGCACTCATCGTTCATGCCATGGTTGACGGTGACCATGTTGAAGTTCTTGTCTTCAAGGGATTCTCATCAAGTTTGAGCTATGGGACATCACCTGATCCATCAAGAAGTGTTCTTCCCGAAAGAGCAATCATTAAATTCATTGATAGAATCAAAGGCCCATTTGATCCATCAAATATCCAATACATTCAGAAGGAATTTCAAACAATACCATAA
BLAST of CSPI05G00550 vs. TrEMBL
Match: A0A0A0KJ82_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G021310 PE=4 SV=1)

HSP 1 Score: 342.4 bits (877), Expect = 3.1e-91
Identity = 167/172 (97.09%), Postives = 168/172 (97.67%), Query Frame = 1

Query: 1   MATNFHKTPILHSISLTNLFPILPTNPKPSLTNTPFSFPLIHKSPNFKTCLPRPAPNGCA 60
           MATNFHKTPILHSISLTNLFPILP+NPKPSLTNTPFSFPLIHKSPNFKTCLPRP PN CA
Sbjct: 1   MATNFHKTPILHSISLTNLFPILPSNPKPSLTNTPFSFPLIHKSPNFKTCLPRPGPNRCA 60

Query: 61  ARRRVRY--DDEDEDEDYGHNHQIALLESYTQAATGEALIVHAMVDGDHVEVLVFKGFSS 120
           ARRRVRY  DDEDEDEDYGHNHQIALLESYTQAATGEALIVHAMVDGDHVEVLVFKGFSS
Sbjct: 61  ARRRVRYDDDDEDEDEDYGHNHQIALLESYTQAATGEALIVHAMVDGDHVEVLVFKGFSS 120

Query: 121 SLSYGTSPDPSRSVLPERAIIKFIDRIKGPFDPSNIQYIQKGITWNSFNFLN 171
           SLSYGTSPDPSRSVLPERAIIKFIDRIKGPFDPSNIQYIQKGITWNSFNFLN
Sbjct: 121 SLSYGTSPDPSRSVLPERAIIKFIDRIKGPFDPSNIQYIQKGITWNSFNFLN 172

BLAST of CSPI05G00550 vs. TrEMBL
Match: A0A068V6V0_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00018016001 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 4.7e-39
Identity = 78/108 (72.22%), Postives = 95/108 (87.96%), Query Frame = 1

Query: 59  CAARRRVRYDDEDEDEDYGHNHQIALLESYTQAATGEALIVHAMVDGDHVEVLVFKGFSS 118
           C+ARRRV Y+DE+EDE+YG+N +IA+LE+YTQ+A  EAL+V AMVD + VEVL+FKGFSS
Sbjct: 54  CSARRRVVYEDEEEDEEYGYNAEIAMLETYTQSARNEALLVKAMVDEEEVEVLIFKGFSS 113

Query: 119 SLSYGTSPDPSRSVLPERAIIKFIDRIKGPFDPSNIQYIQKGITWNSF 167
            LSYGTSPDPSRSVLP RA IK IDR+KGPF+PSNI+YI+KG+TW  F
Sbjct: 114 CLSYGTSPDPSRSVLPTRAEIKSIDRVKGPFEPSNIEYIEKGLTWEIF 161

BLAST of CSPI05G00550 vs. TrEMBL
Match: B9T4M8_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0053580 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 5.2e-38
Identity = 87/150 (58.00%), Postives = 110/150 (73.33%), Query Frame = 1

Query: 22  ILPTNPKP--SLTNTPFSFPLIHKSPNFKTCLPRPAPNGCAARRRVRYDDE---DEDEDY 81
           +L + PKP  SL N   + P I      +T +P      C+ARRRVRY+DE   D+D++Y
Sbjct: 1   MLSSLPKPNTSLHNNLITSPAIKSLKLSRTRVPVSWLR-CSARRRVRYEDENDDDDDDEY 60

Query: 82  GHNHQIALLESYTQAATGEALIVHAMVDGDHVEVLVFKGFSSSLSYGTSPDPSRSVLPER 141
           GHN +IA+LE Y+Q+A  EAL+VHA VD    EVL+FKGFSS LSY TSPDPS+SVLP R
Sbjct: 61  GHNEEIAILEFYSQSAREEALLVHAAVDEQEAEVLIFKGFSSCLSYKTSPDPSKSVLPAR 120

Query: 142 AIIKFIDRIKGPFDPSNIQYIQKGITWNSF 167
           A+IK IDRIKGPFDPSNI+Y++KG+TW +F
Sbjct: 121 AVIKSIDRIKGPFDPSNIEYLEKGLTWQAF 149

BLAST of CSPI05G00550 vs. TrEMBL
Match: B9HJH1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s13480g PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 5.2e-38
Identity = 80/112 (71.43%), Postives = 96/112 (85.71%), Query Frame = 1

Query: 59  CAARRR-VRYDDEDED---EDYGHNHQIALLESYTQAATGEALIVHAMVDGDHVEVLVFK 118
           C ARRR VRY+DEDED   E+YGHN +IA+LE Y+Q+A GEAL+VHA+VD   VEVL+FK
Sbjct: 55  CRARRRSVRYEDEDEDDREEEYGHNLEIAMLEFYSQSAIGEALLVHAIVDEQEVEVLIFK 114

Query: 119 GFSSSLSYGTSPDPSRSVLPERAIIKFIDRIKGPFDPSNIQYIQKGITWNSF 167
           GFSS LSYGTSPDPSRSVLP RA+IK IDRIKGPF+PSNI+Y++K +TW +F
Sbjct: 115 GFSSCLSYGTSPDPSRSVLPARAVIKSIDRIKGPFNPSNIEYLEKDLTWEAF 166

BLAST of CSPI05G00550 vs. TrEMBL
Match: D7T8K4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g05820 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 6.8e-38
Identity = 77/110 (70.00%), Postives = 95/110 (86.36%), Query Frame = 1

Query: 59  CAARRRVRYDDEDEDED--YGHNHQIALLESYTQAATGEALIVHAMVDGDHVEVLVFKGF 118
           C ARRRVRY+DEDE E+  YGHN +IA+LE Y+Q+A GEAL+VHAMVD   VEVL+FKGF
Sbjct: 52  CRARRRVRYEDEDEGEEDEYGHNAEIAMLELYSQSARGEALLVHAMVDDQDVEVLIFKGF 111

Query: 119 SSSLSYGTSPDPSRSVLPERAIIKFIDRIKGPFDPSNIQYIQKGITWNSF 167
           SS LSY TSPDPS+S+LP RA+IK IDRIKGPF+PS+I+YI+KG+ W++F
Sbjct: 112 SSCLSYRTSPDPSKSILPARAVIKSIDRIKGPFNPSDIEYIEKGLAWDAF 161

BLAST of CSPI05G00550 vs. TAIR10
Match: AT2G01755.1 (AT2G01755.1 unknown protein)

HSP 1 Score: 130.2 bits (326), Expect = 1.2e-30
Identity = 65/110 (59.09%), Postives = 85/110 (77.27%), Query Frame = 1

Query: 59  CAARRRVRYDD--EDEDEDYGHNHQIALLESYTQAATGEALIVHAMVDGDHVEVLVFKGF 118
           C ARRRVR +   EDEDE YG+N ++A+LE Y+Q+   EALIV A+VD + VEV++FKG 
Sbjct: 58  CGARRRVRDEGGGEDEDEMYGYNEEMAMLEIYSQSCREEALIVTAIVDDEEVEVVIFKGV 117

Query: 119 SSSLSYGTSPDPSRSVLPERAIIKFIDRIKGPFDPSNIQYIQKGITWNSF 167
           SS LS  T+ DP+RSVLPERA+I  IDR++GPFDPS I YIQ+ I++ +F
Sbjct: 118 SSCLSGETAVDPARSVLPERAVITKIDRVRGPFDPSQIHYIQRDISFQAF 167

BLAST of CSPI05G00550 vs. NCBI nr
Match: gi|778698045|ref|XP_004142303.2| (PREDICTED: uncharacterized protein LOC101213440 [Cucumis sativus])

HSP 1 Score: 342.4 bits (877), Expect = 4.5e-91
Identity = 167/172 (97.09%), Postives = 168/172 (97.67%), Query Frame = 1

Query: 1   MATNFHKTPILHSISLTNLFPILPTNPKPSLTNTPFSFPLIHKSPNFKTCLPRPAPNGCA 60
           MATNFHKTPILHSISLTNLFPILP+NPKPSLTNTPFSFPLIHKSPNFKTCLPRP PN CA
Sbjct: 1   MATNFHKTPILHSISLTNLFPILPSNPKPSLTNTPFSFPLIHKSPNFKTCLPRPGPNRCA 60

Query: 61  ARRRVRY--DDEDEDEDYGHNHQIALLESYTQAATGEALIVHAMVDGDHVEVLVFKGFSS 120
           ARRRVRY  DDEDEDEDYGHNHQIALLESYTQAATGEALIVHAMVDGDHVEVLVFKGFSS
Sbjct: 61  ARRRVRYDDDDEDEDEDYGHNHQIALLESYTQAATGEALIVHAMVDGDHVEVLVFKGFSS 120

Query: 121 SLSYGTSPDPSRSVLPERAIIKFIDRIKGPFDPSNIQYIQKGITWNSFNFLN 171
           SLSYGTSPDPSRSVLPERAIIKFIDRIKGPFDPSNIQYIQKGITWNSFNFLN
Sbjct: 121 SLSYGTSPDPSRSVLPERAIIKFIDRIKGPFDPSNIQYIQKGITWNSFNFLN 172

BLAST of CSPI05G00550 vs. NCBI nr
Match: gi|659102980|ref|XP_008452414.1| (PREDICTED: uncharacterized protein LOC103493452 [Cucumis melo])

HSP 1 Score: 288.1 bits (736), Expect = 1.0e-74
Identity = 146/169 (86.39%), Postives = 151/169 (89.35%), Query Frame = 1

Query: 1   MATNFHKTPILHSISLTNLFPILPTNPKPSLTNTPFSFPLIHKSPNFKTCLPRPAPNGCA 60
           MATN HKTPILHS SLTNLFP  P+NP  SLTN PFSFP IHKSPNFKTC+  P   GCA
Sbjct: 1   MATNLHKTPILHSNSLTNLFPF-PSNPNTSLTNIPFSFP-IHKSPNFKTCVRGPGHKGCA 60

Query: 61  ARRRVRY-DDEDEDEDYGHNHQIALLESYTQAATGEALIVHAMVDGDHVEVLVFKGFSSS 120
           ARRRVRY DDEDEDEDYGHN QIALLESYTQAATGEALIVHAMVDG+HVEVLVFKGFSS 
Sbjct: 61  ARRRVRYDDDEDEDEDYGHNDQIALLESYTQAATGEALIVHAMVDGEHVEVLVFKGFSSC 120

Query: 121 LSYGTSPDPSRSVLPERAIIKFIDRIKGPFDPSNIQYIQKGITWNSFNF 169
           LSYGTSPDPSRSV+PERA IK IDRIKGPFDPSNIQYI+KGITWNSFNF
Sbjct: 121 LSYGTSPDPSRSVVPERATIKSIDRIKGPFDPSNIQYIEKGITWNSFNF 167

BLAST of CSPI05G00550 vs. NCBI nr
Match: gi|657993744|ref|XP_008389168.1| (PREDICTED: uncharacterized protein LOC103451535 [Malus domestica])

HSP 1 Score: 173.7 bits (439), Expect = 2.7e-40
Identity = 84/125 (67.20%), Postives = 100/125 (80.00%), Query Frame = 1

Query: 46  NFKTCLPRPAPNGCAARRRV-RYDD---EDEDEDYGHNHQIALLESYTQAATGEALIVHA 105
           N     PR     CAARRRV RYDD   +DED +YGHN +IA+LE Y+Q+  GEALIVHA
Sbjct: 51  NVNAFRPRGLSTRCAARRRVLRYDDDEDDDEDVEYGHNKEIAVLELYSQSVRGEALIVHA 110

Query: 106 MVDGDHVEVLVFKGFSSSLSYGTSPDPSRSVLPERAIIKFIDRIKGPFDPSNIQYIQKGI 165
           +VD   VEVL+FKGFSSSLSYGTSPDPS+S+LP RA+IK IDR+KGPFDPSNI+Y+QKG+
Sbjct: 111 LVDDQDVEVLIFKGFSSSLSYGTSPDPSKSILPARAVIKAIDRVKGPFDPSNIEYLQKGL 170

Query: 166 TWNSF 167
           TW +F
Sbjct: 171 TWEAF 175

BLAST of CSPI05G00550 vs. NCBI nr
Match: gi|658062188|ref|XP_008366983.1| (PREDICTED: uncharacterized protein LOC103430615 [Malus domestica])

HSP 1 Score: 173.7 bits (439), Expect = 2.7e-40
Identity = 84/125 (67.20%), Postives = 100/125 (80.00%), Query Frame = 1

Query: 46  NFKTCLPRPAPNGCAARRRV-RYDD---EDEDEDYGHNHQIALLESYTQAATGEALIVHA 105
           N     PR     CAARRRV RYDD   +DED +YGHN +IA+LE Y+Q+  GEALIVHA
Sbjct: 51  NVNAFRPRGLSTRCAARRRVLRYDDDEDDDEDVEYGHNKEIAVLELYSQSVRGEALIVHA 110

Query: 106 MVDGDHVEVLVFKGFSSSLSYGTSPDPSRSVLPERAIIKFIDRIKGPFDPSNIQYIQKGI 165
           +VD   VEVL+FKGFSSSLSYGTSPDPS+S+LP RA+IK IDR+KGPFDPSNI+Y+QKG+
Sbjct: 111 LVDDQDVEVLIFKGFSSSLSYGTSPDPSKSILPARAVIKAIDRVKGPFDPSNIEYLQKGL 170

Query: 166 TWNSF 167
           TW +F
Sbjct: 171 TWEAF 175

BLAST of CSPI05G00550 vs. NCBI nr
Match: gi|661880004|emb|CDP16252.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 169.1 bits (427), Expect = 6.8e-39
Identity = 78/108 (72.22%), Postives = 95/108 (87.96%), Query Frame = 1

Query: 59  CAARRRVRYDDEDEDEDYGHNHQIALLESYTQAATGEALIVHAMVDGDHVEVLVFKGFSS 118
           C+ARRRV Y+DE+EDE+YG+N +IA+LE+YTQ+A  EAL+V AMVD + VEVL+FKGFSS
Sbjct: 54  CSARRRVVYEDEEEDEEYGYNAEIAMLETYTQSARNEALLVKAMVDEEEVEVLIFKGFSS 113

Query: 119 SLSYGTSPDPSRSVLPERAIIKFIDRIKGPFDPSNIQYIQKGITWNSF 167
            LSYGTSPDPSRSVLP RA IK IDR+KGPF+PSNI+YI+KG+TW  F
Sbjct: 114 CLSYGTSPDPSRSVLPTRAEIKSIDRVKGPFEPSNIEYIEKGLTWEIF 161

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KJ82_CUCSA3.1e-9197.09Uncharacterized protein OS=Cucumis sativus GN=Csa_5G021310 PE=4 SV=1[more]
A0A068V6V0_COFCA4.7e-3972.22Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00018016001 PE=4 SV=1[more]
B9T4M8_RICCO5.2e-3858.00Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0053580 PE=4 SV=1[more]
B9HJH1_POPTR5.2e-3871.43Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s13480g PE=4 SV=1[more]
D7T8K4_VITVI6.8e-3870.00Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g05820 PE=4 SV=... [more]
Match NameE-valueIdentityDescription
AT2G01755.11.2e-3059.09 unknown protein[more]
Match NameE-valueIdentityDescription
gi|778698045|ref|XP_004142303.2|4.5e-9197.09PREDICTED: uncharacterized protein LOC101213440 [Cucumis sativus][more]
gi|659102980|ref|XP_008452414.1|1.0e-7486.39PREDICTED: uncharacterized protein LOC103493452 [Cucumis melo][more]
gi|657993744|ref|XP_008389168.1|2.7e-4067.20PREDICTED: uncharacterized protein LOC103451535 [Malus domestica][more]
gi|658062188|ref|XP_008366983.1|2.7e-4067.20PREDICTED: uncharacterized protein LOC103430615 [Malus domestica][more]
gi|661880004|emb|CDP16252.1|6.8e-3972.22unnamed protein product [Coffea canephora][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0009507 chloroplast
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI05G00550.2CSPI05G00550.2mRNA
CSPI05G00550.1CSPI05G00550.1mRNA


Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36729FAMILY NOT NAMEDcoord: 1..162
score: 7.1