Cucsa.392770 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.392770
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial
Location	scaffold04070 : 44446 .. 44936 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTTCGTTACGACGACGACGACGAAGATGAAGATGAAGATTACGGCCACAACCATCAGATTGCACTGTTGGAATCCTACACTCAGGCCGCCACAGGAGAAGCACTCATCGTTCATGCCATGGTTGACGGTGACCATGTTGAAGTTCTTGTCTTCAAGGTTTTTCCTCTTTTCTGTTCAGAGATTTATTGTTTTGGTTAAATAATTAGAATATAATTTTTAGTAATGTTTAGTAGATAAAGAAGAAGAAGAGTTGTTAAAAACTGAAAAAGAATATAAACGGAGTAGAAAATGTGTGGAATGATTAATATTATATTTGTAGGGATTCTCATCAAGTTTGAGCTATGGGACATCACCTGATCCATCAAGAAGTGTTCTTCCCGAAAGAGCAATCATTAAATTCATTGATAGAATCAAAGGCCCATTTGATCCATCAAATATCCAATACATTCAGAAGGGTATCACTTGGAATTCATTTAACTTCCTCAATTAA

mRNA sequence

AGTTCGTTACGACGACGACGACGAAGATGAAGATGAAGATTACGGCCACAACCATCAGATTGCACTGTTGGAATCCTACACTCAGGCCGCCACAGGAGAAGCACTCATCGTTCATGCCATGGTTGACGGTGACCATGTTGAAGTTCTTGTCTTCAAGGGATTCTCATCAAGTTTGAGCTATGGGACATCACCTGATCCATCAAGAAGTGTTCTTCCCGAAAGAGCAATCATTAAATTCATTGATAGAATCAAAGGCCCATTTGATCCATCAAATATCCAATACATTCAGAAGGGTATCACTTGGAATTCATTTAACTTCCTCAATTAA

Coding sequence (CDS)

AGTTCGTTACGACGACGACGACGAAGATGAAGATGAAGATTACGGCCACAACCATCAGATTGCACTGTTGGAATCCTACACTCAGGCCGCCACAGGAGAAGCACTCATCGTTCATGCCATGGTTGACGGTGACCATGTTGAAGTTCTTGTCTTCAAGGGATTCTCATCAAGTTTGAGCTATGGGACATCACCTGATCCATCAAGAAGTGTTCTTCCCGAAAGAGCAATCATTAAATTCATTGATAGAATCAAAGGCCCATTTGATCCATCAAATATCCAATACATTCAGAAGGGTATCACTTGGAATTCATTTAACTTCCTCAATTAA

Protein sequence

VRYDDDDEDEDEDYGHNHQIALLESYTQAATGEALIVHAMVDGDHVEVLVFKGFSSSLSYGTSPDPSRSVLPERAIIKFIDRIKGPFDPSNIQYIQKGITWNSFNFLN*

Homology

[Close]

BLAST of Cucsa.392770 vs. TrEMBL
Match: A0A0A0KJ82_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G021310 PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 1.0e-55
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1


Query: 1   VRYDDDDEDEDEDYGHNHQIALLESYTQAATGEALIVHAMVDGDHVEVLVFKGFSSSLSY 60
           VRYDDDDEDEDEDYGHNHQIALLESYTQAATGEALIVHAMVDGDHVEVLVFKGFSSSLSY
Sbjct: 65  VRYDDDDEDEDEDYGHNHQIALLESYTQAATGEALIVHAMVDGDHVEVLVFKGFSSSLSY 124

Query: 61  GTSPDPSRSVLPERAIIKFIDRIKGPFDPSNIQYIQKGITWNSFNFLN 109
           GTSPDPSRSVLPERAIIKFIDRIKGPFDPSNIQYIQKGITWNSFNFLN
Sbjct: 125 GTSPDPSRSVLPERAIIKFIDRIKGPFDPSNIQYIQKGITWNSFNFLN 172

[Close]

BLAST of Cucsa.392770 vs. TrEMBL
Match: B9HJH1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s13480g PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 3.1e-36
Identity = 74/105 (70.48%), Postives = 93/105 (88.57%), Query Frame = 1


Query: 1   VRYDDDDEDE-DEDYGHNHQIALLESYTQAATGEALIVHAMVDGDHVEVLVFKGFSSSLS 60
           VRY+D+DED+ +E+YGHN +IA+LE Y+Q+A GEAL+VHA+VD   VEVL+FKGFSS LS
Sbjct: 62  VRYEDEDEDDREEEYGHNLEIAMLEFYSQSAIGEALLVHAIVDEQEVEVLIFKGFSSCLS 121

Query: 61  YGTSPDPSRSVLPERAIIKFIDRIKGPFDPSNIQYIQKGITWNSF 105
           YGTSPDPSRSVLP RA+IK IDRIKGPF+PSNI+Y++K +TW +F
Sbjct: 122 YGTSPDPSRSVLPARAVIKSIDRIKGPFNPSNIEYLEKDLTWEAF 166

[Close]

BLAST of Cucsa.392770 vs. TrEMBL
Match: D7T8K4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g05820 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 5.3e-36
Identity = 71/104 (68.27%), Postives = 92/104 (88.46%), Query Frame = 1


Query: 1   VRYDDDDEDEDEDYGHNHQIALLESYTQAATGEALIVHAMVDGDHVEVLVFKGFSSSLSY 60
           VRY+D+DE E+++YGHN +IA+LE Y+Q+A GEAL+VHAMVD   VEVL+FKGFSS LSY
Sbjct: 58  VRYEDEDEGEEDEYGHNAEIAMLELYSQSARGEALLVHAMVDDQDVEVLIFKGFSSCLSY 117

Query: 61  GTSPDPSRSVLPERAIIKFIDRIKGPFDPSNIQYIQKGITWNSF 105
            TSPDPS+S+LP RA+IK IDRIKGPF+PS+I+YI+KG+ W++F
Sbjct: 118 RTSPDPSKSILPARAVIKSIDRIKGPFNPSDIEYIEKGLAWDAF 161

[Close]

BLAST of Cucsa.392770 vs. TrEMBL
Match: M5Y6A0_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa018074mg PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 6.9e-36
Identity = 73/105 (69.52%), Postives = 91/105 (86.67%), Query Frame = 1


Query: 1   VRYDDDDED-EDEDYGHNHQIALLESYTQAATGEALIVHAMVDGDHVEVLVFKGFSSSLS 60
           VRYDDD ED E+E+YGH+ +IA+LE Y+Q+  GEALIVHA+VD   V+VL+FKGFSS LS
Sbjct: 19  VRYDDDGEDEEEEEYGHHKEIAVLELYSQSVRGEALIVHAVVDDQDVQVLIFKGFSSCLS 78

Query: 61  YGTSPDPSRSVLPERAIIKFIDRIKGPFDPSNIQYIQKGITWNSF 105
           Y TSPDPS+S+LP RA+IK IDR+KGPFDPSNI+Y+QKG+TW +F
Sbjct: 79  YRTSPDPSKSILPARAVIKSIDRVKGPFDPSNIEYLQKGLTWEAF 123

[Close]

BLAST of Cucsa.392770 vs. TrEMBL
Match: A0A072VF21_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_1g032560 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.2e-35
Identity = 70/104 (67.31%), Postives = 89/104 (85.58%), Query Frame = 1


Query: 1   VRYDDDDEDEDEDYGHNHQIALLESYTQAATGEALIVHAMVDGDHVEVLVFKGFSSSLSY 60
           +RY D+DE+ D++ GHN +I+ LE Y+Q+A GEALIVHA+VD + VEVL+FKGFSSSLSY
Sbjct: 62  IRYQDEDEERDDESGHNEEISKLEFYSQSARGEALIVHALVDQNEVEVLIFKGFSSSLSY 121

Query: 61  GTSPDPSRSVLPERAIIKFIDRIKGPFDPSNIQYIQKGITWNSF 105
           GTSPDP+RS+LP RA+IK IDRIKGPFDP+NI+Y+QK + W  F
Sbjct: 122 GTSPDPTRSILPARAVIKSIDRIKGPFDPANIEYLQKDVPWEEF 165

[Close]

BLAST of Cucsa.392770 vs. TAIR10
Match: AT2G01755.1 (AT2G01755.1 unknown protein)

HSP 1 Score: 121.7 bits (304), Expect = 2.8e-28
Identity = 60/104 (57.69%), Postives = 80/104 (76.92%), Query Frame = 1


Query: 1   VRYDDDDEDEDEDYGHNHQIALLESYTQAATGEALIVHAMVDGDHVEVLVFKGFSSSLSY 60
           VR +   EDEDE YG+N ++A+LE Y+Q+   EALIV A+VD + VEV++FKG SS LS 
Sbjct: 64  VRDEGGGEDEDEMYGYNEEMAMLEIYSQSCREEALIVTAIVDDEEVEVVIFKGVSSCLSG 123

Query: 61  GTSPDPSRSVLPERAIIKFIDRIKGPFDPSNIQYIQKGITWNSF 105
            T+ DP+RSVLPERA+I  IDR++GPFDPS I YIQ+ I++ +F
Sbjct: 124 ETAVDPARSVLPERAVITKIDRVRGPFDPSQIHYIQRDISFQAF 167

[Close]

BLAST of Cucsa.392770 vs. NCBI nr
Match: gi|778698045|ref|XP_004142303.2| (PREDICTED: uncharacterized protein LOC101213440 [Cucumis sativus])

HSP 1 Score: 223.8 bits (569), Expect = 1.5e-55
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1


Query: 1   VRYDDDDEDEDEDYGHNHQIALLESYTQAATGEALIVHAMVDGDHVEVLVFKGFSSSLSY 60
           VRYDDDDEDEDEDYGHNHQIALLESYTQAATGEALIVHAMVDGDHVEVLVFKGFSSSLSY
Sbjct: 65  VRYDDDDEDEDEDYGHNHQIALLESYTQAATGEALIVHAMVDGDHVEVLVFKGFSSSLSY 124

Query: 61  GTSPDPSRSVLPERAIIKFIDRIKGPFDPSNIQYIQKGITWNSFNFLN 109
           GTSPDPSRSVLPERAIIKFIDRIKGPFDPSNIQYIQKGITWNSFNFLN
Sbjct: 125 GTSPDPSRSVLPERAIIKFIDRIKGPFDPSNIQYIQKGITWNSFNFLN 172

[Close]

BLAST of Cucsa.392770 vs. NCBI nr
Match: gi|659102980|ref|XP_008452414.1| (PREDICTED: uncharacterized protein LOC103493452 [Cucumis melo])

HSP 1 Score: 198.7 bits (504), Expect = 5.1e-48
Identity = 98/106 (92.45%), Postives = 101/106 (95.28%), Query Frame = 1


Query: 1   VRYDDDDEDEDEDYGHNHQIALLESYTQAATGEALIVHAMVDGDHVEVLVFKGFSSSLSY 60
           VRY DDDEDEDEDYGHN QIALLESYTQAATGEALIVHAMVDG+HVEVLVFKGFSS LSY
Sbjct: 63  VRY-DDDEDEDEDYGHNDQIALLESYTQAATGEALIVHAMVDGEHVEVLVFKGFSSCLSY 122

Query: 61  GTSPDPSRSVLPERAIIKFIDRIKGPFDPSNIQYIQKGITWNSFNF 107
           GTSPDPSRSV+PERA IK IDRIKGPFDPSNIQYI+KGITWNSFNF
Sbjct: 123 GTSPDPSRSVVPERATIKSIDRIKGPFDPSNIQYIEKGITWNSFNF 167

[Close]

BLAST of Cucsa.392770 vs. NCBI nr
Match: gi|657993744|ref|XP_008389168.1| (PREDICTED: uncharacterized protein LOC103451535 [Malus domestica])

HSP 1 Score: 165.6 bits (418), Expect = 4.8e-38
Identity = 76/105 (72.38%), Postives = 93/105 (88.57%), Query Frame = 1


Query: 1   VRYDDD-DEDEDEDYGHNHQIALLESYTQAATGEALIVHAMVDGDHVEVLVFKGFSSSLS 60
           +RYDDD D+DED +YGHN +IA+LE Y+Q+  GEALIVHA+VD   VEVL+FKGFSSSLS
Sbjct: 71  LRYDDDEDDDEDVEYGHNKEIAVLELYSQSVRGEALIVHALVDDQDVEVLIFKGFSSSLS 130

Query: 61  YGTSPDPSRSVLPERAIIKFIDRIKGPFDPSNIQYIQKGITWNSF 105
           YGTSPDPS+S+LP RA+IK IDR+KGPFDPSNI+Y+QKG+TW +F
Sbjct: 131 YGTSPDPSKSILPARAVIKAIDRVKGPFDPSNIEYLQKGLTWEAF 175

[Close]

BLAST of Cucsa.392770 vs. NCBI nr
Match: gi|658062188|ref|XP_008366983.1| (PREDICTED: uncharacterized protein LOC103430615 [Malus domestica])

HSP 1 Score: 165.6 bits (418), Expect = 4.8e-38
Identity = 76/105 (72.38%), Postives = 93/105 (88.57%), Query Frame = 1


Query: 1   VRYDDD-DEDEDEDYGHNHQIALLESYTQAATGEALIVHAMVDGDHVEVLVFKGFSSSLS 60
           +RYDDD D+DED +YGHN +IA+LE Y+Q+  GEALIVHA+VD   VEVL+FKGFSSSLS
Sbjct: 71  LRYDDDEDDDEDVEYGHNKEIAVLELYSQSVRGEALIVHALVDDQDVEVLIFKGFSSSLS 130

Query: 61  YGTSPDPSRSVLPERAIIKFIDRIKGPFDPSNIQYIQKGITWNSF 105
           YGTSPDPS+S+LP RA+IK IDR+KGPFDPSNI+Y+QKG+TW +F
Sbjct: 131 YGTSPDPSKSILPARAVIKAIDRVKGPFDPSNIEYLQKGLTWEAF 175

[Close]

BLAST of Cucsa.392770 vs. NCBI nr
Match: gi|224101901|ref|XP_002312467.1| (hypothetical protein POPTR_0008s13480g [Populus trichocarpa])

HSP 1 Score: 159.1 bits (401), Expect = 4.5e-36
Identity = 74/105 (70.48%), Postives = 93/105 (88.57%), Query Frame = 1


Query: 1   VRYDDDDEDE-DEDYGHNHQIALLESYTQAATGEALIVHAMVDGDHVEVLVFKGFSSSLS 60
           VRY+D+DED+ +E+YGHN +IA+LE Y+Q+A GEAL+VHA+VD   VEVL+FKGFSS LS
Sbjct: 62  VRYEDEDEDDREEEYGHNLEIAMLEFYSQSAIGEALLVHAIVDEQEVEVLIFKGFSSCLS 121

Query: 61  YGTSPDPSRSVLPERAIIKFIDRIKGPFDPSNIQYIQKGITWNSF 105
           YGTSPDPSRSVLP RA+IK IDRIKGPF+PSNI+Y++K +TW +F
Sbjct: 122 YGTSPDPSRSVLPARAVIKSIDRIKGPFNPSNIEYLEKDLTWEAF 166

The following BLAST results are available for this feature:

BLAST of Cucsa.392770 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJ82_CUCSA	1.0e-55	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G021310 PE=4 SV=1	[more]
B9HJH1_POPTR	3.1e-36	70.48	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s13480g PE=4 SV=1	[more]
D7T8K4_VITVI	5.3e-36	68.27	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g05820 PE=4 SV=...	[more]
M5Y6A0_PRUPE	6.9e-36	69.52	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa018074mg PE=4 S...	[more]
A0A072VF21_MEDTR	1.2e-35	67.31	Uncharacterized protein OS=Medicago truncatula GN=MTR_1g032560 PE=4 SV=1	[more]

BLAST of Cucsa.392770 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G01755.1	2.8e-28	57.69	unknown protein	[more]

BLAST of Cucsa.392770 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778698045\|ref\|XP_004142303.2\|	1.5e-55	100.00	PREDICTED: uncharacterized protein LOC101213440 [Cucumis sativus]	[more]
gi\|659102980\|ref\|XP_008452414.1\|	5.1e-48	92.45	PREDICTED: uncharacterized protein LOC103493452 [Cucumis melo]	[more]
gi\|657993744\|ref\|XP_008389168.1\|	4.8e-38	72.38	PREDICTED: uncharacterized protein LOC103451535 [Malus domestica]	[more]
gi\|658062188\|ref\|XP_008366983.1\|	4.8e-38	72.38	PREDICTED: uncharacterized protein LOC103430615 [Malus domestica]	[more]
gi\|224101901\|ref\|XP_002312467.1\|	4.5e-36	70.48	hypothetical protein POPTR_0008s13480g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.392770.1	Cucsa.392770.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36729	FAMILY NOT NAMED	coord: 1..104 score: 5.6
None	No IPR available	PANTHER	PTHR36729:SF1	SUBFAMILY NOT NAMED	coord: 1..104 score: 5.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.392770	Csa5G021310	Cucumber (Chinese Long) v2	cgycuB548
Cucsa.392770	CSPI05G00550	Wild cucumber (PI 183967)	cgycpiB577

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.392770	Cucumber (Chinese Long) v3	cgycucB594