Csa4G025110 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G025110
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionCyclin-U4-1; contains IPR013763 (Cyclin-like), IPR013922 (Cyclin PHO80-like)
LocationChr4 : 2703655 .. 2704557 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGAAAGAGAGAGAGAGAGAGAGTTAGTAATTGATCCACACCCACAACCAAAATAAAAATGAGAGTGAAAGCACTTCTGAAATAGGTGACGATCGATAATATTGAATGGGAGAAAAAGAAGGAATGGTTGGGATTCCCAAAGTCATAAACTATCTATCCTCTGTTCTACAGAGAGTTTCAGATTCCAATGACAAAGAAAACAGGATGATTACCAAAAGGAATAATTCAGGTTTTGATGGAATATCAAGACCAAGCATTTCCATACAAAGTTATTTAGAGAGGATCTTTAAGTATGCAAACTGTAGTCCAAGTTGCTTTGTTGCTGCTTATGTTTATCTTCATCGCTTTCTTCACAATCATCATCCTTCCAATCTTCATATTGATTCCTTCAACGTTCATAGACTTCTCATTACAAGTGTTCTTGTTTCTGCCAAGTTCTTCGATGATCTGTAAGTTCTTCTTCTTCTTCTTCTTTCAATATTTCTGCCAACTTTCCTCATTATCTTCTTCTTCTTCTTTCTTTAAACCTATCATGTTCGAATGTTTATTGATTCATTCCATAAAATCCTTGAAATAGATGAATTAATTGTTTCGGGATATATATGTAATTTTCTGTTCAGGTATTACAACAATGCTTACTATGCAAAAGTTGGTGGAATAAGCACCATGGAAATGAACCATCTTGAATTGGATTTCTTATTTGGTTTGAGATTCCAATTAAATGTATCACCAAACACATTTCACATTTACTGCTCTTATCTCCAATCAGAAATGCTATCAACAACACAACCCAAACTCCAAATCCAAACACCTATAGAACAGCTCCATTCCTTCCCAGAAGATCCAGAAGCGCGCTTGACGGTTTGAGCCATCTCGGCATCTCGAAATCATTTTTGTTAAAAG

mRNA sequence

ATGGGAGAAAAAGAAGGAATGGTTGGGATTCCCAAAGTCATAAACTATCTATCCTCTGTTCTACAGAGAGTTTCAGATTCCAATGACAAAGAAAACAGGATGATTACCAAAAGGAATAATTCAGGTTTTGATGGAATATCAAGACCAAGCATTTCCATACAAAGTTATTTAGAGAGGATCTTTAAGTATGCAAACTGTAGTCCAAGTTGCTTTGTTGCTGCTTATGTTTATCTTCATCGCTTTCTTCACAATCATCATCCTTCCAATCTTCATATTGATTCCTTCAACGTTCATAGACTTCTCATTACAAGTGTTCTTGTTTCTGCCAAGTTCTTCGATGATCTGTATTACAACAATGCTTACTATGCAAAAGTTGGTGGAATAAGCACCATGGAAATGAACCATCTTGAATTGGATTTCTTATTTGGTTTGAGATTCCAATTAAATGTATCACCAAACACATTTCACATTTACTGCTCTTATCTCCAATCAGAAATGCTATCAACAACACAACCCAAACTCCAAATCCAAACACCTATAGAACAGCTCCATTCCTTCCCAGAAGATCCAGAAGCGCGCTTGACGGTTTGA

Coding sequence (CDS)

ATGGGAGAAAAAGAAGGAATGGTTGGGATTCCCAAAGTCATAAACTATCTATCCTCTGTTCTACAGAGAGTTTCAGATTCCAATGACAAAGAAAACAGGATGATTACCAAAAGGAATAATTCAGGTTTTGATGGAATATCAAGACCAAGCATTTCCATACAAAGTTATTTAGAGAGGATCTTTAAGTATGCAAACTGTAGTCCAAGTTGCTTTGTTGCTGCTTATGTTTATCTTCATCGCTTTCTTCACAATCATCATCCTTCCAATCTTCATATTGATTCCTTCAACGTTCATAGACTTCTCATTACAAGTGTTCTTGTTTCTGCCAAGTTCTTCGATGATCTGTATTACAACAATGCTTACTATGCAAAAGTTGGTGGAATAAGCACCATGGAAATGAACCATCTTGAATTGGATTTCTTATTTGGTTTGAGATTCCAATTAAATGTATCACCAAACACATTTCACATTTACTGCTCTTATCTCCAATCAGAAATGCTATCAACAACACAACCCAAACTCCAAATCCAAACACCTATAGAACAGCTCCATTCCTTCCCAGAAGATCCAGAAGCGCGCTTGACGGTTTGA

Protein sequence

MGEKEGMVGIPKVINYLSSVLQRVSDSNDKENRMITKRNNSGFDGISRPSISIQSYLERIFKYANCSPSCFVAAYVYLHRFLHNHHPSNLHIDSFNVHRLLITSVLVSAKFFDDLYYNNAYYAKVGGISTMEMNHLELDFLFGLRFQLNVSPNTFHIYCSYLQSEMLSTTQPKLQIQTPIEQLHSFPEDPEARLTV*
Homology
[Close]
BLAST of Csa4G025110 vs. Swiss-Prot
Match: CCU41_ARATH (Cyclin-U4-1 OS=Arabidopsis thaliana GN=CYCU4-1 PE=1 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 1.1e-56
Identity = 120/190 (63.16%), Postives = 139/190 (73.16%), Query Frame = 1 

Query: 1   MGEKEGMVGIPKVINYLSSVLQRVSDSNDKENRMITKRNN-SGFDGISRPSISIQSYLER 60
           M E E    + K+I +LSS+L+RV++SND   R+ T+    S F G+SRP+I+IQSYLER
Sbjct: 1   MAELENPSVMSKLIAFLSSLLERVAESNDLTRRVATQSQRVSVFHGLSRPTITIQSYLER 60

Query: 61  IFKYANCSPSCFVAAYVYLHRFLHNHHPSNLHIDSFNVHRLLITSVLVSAKFFDDLYYNN 120
           IFKYANCSPSCFV AYVYL RF H   PS L I+SFNVHRLLITSV+V+AKF DDLYYNN
Sbjct: 61  IFKYANCSPSCFVVAYVYLDRFTHRQ-PS-LPINSFNVHRLLITSVMVAAKFLDDLYYNN 120

Query: 121 AYYAKVGGISTMEMNHLELDFLFGLRFQLNVSPNTFHIYCSYLQSEMLSTTQPKLQIQTP 180
           AYYAKVGGIST EMN LELDFLFGL F+LNV+PNTF+ Y SYLQ EM       L +   
Sbjct: 121 AYYAKVGGISTKEMNFLELDFLFGLGFELNVTPNTFNAYFSYLQKEMTLLQPLSLVVVPS 180

Query: 181 IEQLHSFPED 190
              L +F +D
Sbjct: 181 SRSLITFNDD 188

[Close]
BLAST of Csa4G025110 vs. Swiss-Prot
Match: CCP41_ORYSJ (Cyclin-P4-1 OS=Oryza sativa subsp. japonica GN=CYCP4-1 PE=2 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 9.2e-48
Identity = 99/186 (53.23%), Postives = 124/186 (66.67%), Query Frame = 1 

Query: 10  IPKVINYLSSVLQRVSDSNDKENRMITKRNN----SGFDGISRPSISIQSYLERIFKYAN 69
           +P+V+  LSS+LQRV++ ND               S F G+++P+ISI  YLERIF++AN
Sbjct: 10  VPRVVAILSSLLQRVAERNDAAAAAAAVGEEAAAVSAFQGLTKPAISIGGYLERIFRFAN 69

Query: 70  CSPSCFVAAYVYLHRFLHNHHPSNLHIDSFNVHRLLITSVLVSAKFFDDLYYNNAYYAKV 129
           CSPSC+V AY+YL RFL       L +DSFNVHRLLITSVL + KF DD+ YNNAY+A+V
Sbjct: 70  CSPSCYVVAYIYLDRFLRRRPA--LAVDSFNVHRLLITSVLTAVKFVDDICYNNAYFARV 129

Query: 130 GGISTMEMNHLELDFLFGLRFQLNVSPNTFHIYCSYLQSEMLSTTQPKLQIQTPIEQLHS 189
           GGIS MEMN+LE+DFLFG+ F LNV+P  F  YC+ LQSEM    QP       + +LH 
Sbjct: 130 GGISLMEMNYLEVDFLFGIAFDLNVTPAAFASYCAVLQSEMTYLEQPP---AVDLPRLHC 189

Query: 190 FPEDPE 192
            P D +
Sbjct: 190 CPSDQD 190

[Close]
BLAST of Csa4G025110 vs. Swiss-Prot
Match: CCU42_ARATH (Cyclin-U4-2 OS=Arabidopsis thaliana GN=CYCU4-2 PE=1 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 1.6e-47
Identity = 98/162 (60.49%), Postives = 123/162 (75.93%), Query Frame = 1 

Query: 10  IPKVINYLSSVLQRVSDSNDKENRMITKRNN-SGFDGISRPSISIQSYLERIFKYANCSP 69
           +P VI  +SS+LQRVS++ND  +R   +    S F+ +++PSISI+SY+ERIFKYA+CS 
Sbjct: 20  MPNVITAMSSLLQRVSETNDDLSRPFREHKRISAFNAVTKPSISIRSYMERIFKYADCSD 79

Query: 70  SCFVAAYVYLHRFLHNHHPSNLHIDSFNVHRLLITSVLVSAKFFDDLYYNNAYYAKVGGI 129
           SC++ AY+YL RF+       L IDS NVHRL+ITSVLVSAKF DDL YNNA+YAKVGGI
Sbjct: 80  SCYIVAYIYLDRFIQKQ--PLLPIDSSNVHRLIITSVLVSAKFMDDLCYNNAFYAKVGGI 139

Query: 130 STMEMNHLELDFLFGLRFQLNVSPNTFHIYCSYLQSEMLSTT 171
           +T EMN LELDFLFG+ FQLNV+ +T++ YCS LQ EM+  T
Sbjct: 140 TTEEMNLLELDFLFGIGFQLNVTISTYNDYCSSLQREMVMRT 179

[Close]
BLAST of Csa4G025110 vs. Swiss-Prot
Match: CCU43_ARATH (Cyclin-U4-3 OS=Arabidopsis thaliana GN=CYCU4-3 PE=1 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 1.0e-46
Identity = 96/157 (61.15%), Postives = 120/157 (76.43%), Query Frame = 1 

Query: 10  IPKVINYLSSVLQRVSDSNDKENRMITKRNNSGFDGISRPSISIQSYLERIFKYANCSPS 69
           +P V+  +S +LQRVS++ND  ++   K+  S F G+++PSISI+SYLERIF+YANCS S
Sbjct: 22  MPSVLTAMSYLLQRVSETNDNLSQ---KQKPSSFTGVTKPSISIRSYLERIFEYANCSYS 81

Query: 70  CFVAAYVYLHRFLHNHHPSNLHIDSFNVHRLLITSVLVSAKFFDDLYYNNAYYAKVGGIS 129
           C++ AY+YL RF+       L I+SFNVHRL+ITSVLVSAKF DDL YNN YYAKVGGIS
Sbjct: 82  CYIVAYIYLDRFVKKQ--PFLPINSFNVHRLIITSVLVSAKFMDDLSYNNEYYAKVGGIS 141

Query: 130 TMEMNHLELDFLFGLRFQLNVSPNTFHIYCSYLQSEM 167
             EMN LELDFLFG+ F+LNV+ +TF+ YC +LQ EM
Sbjct: 142 REEMNMLELDFLFGIGFELNVTVSTFNNYCCFLQREM 173

[Close]
BLAST of Csa4G025110 vs. Swiss-Prot
Match: CCP31_ORYSJ (Cyclin-P3-1 OS=Oryza sativa subsp. japonica GN=CYCP3-1 PE=3 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 4.3e-37
Identity = 86/182 (47.25%), Postives = 115/182 (63.19%), Query Frame = 1 

Query: 4   KEGMVGIPKVINYLSSVLQR-VSDSNDKENRMITKRNNSGFDGISRPSISIQSYLERIFK 63
           K+     PKV+  L++ L R V  + D  +    K +++ F G   P +SI+ Y ERIFK
Sbjct: 29  KKNNTEYPKVLLLLAAYLDRSVQKNEDLLDSNKIKDSSTIFHGHRAPDLSIKLYAERIFK 88

Query: 64  YANCSPSCFVAAYVYLHRFLHNHHPSNLHIDSFNVHRLLITSVLVSAKFFDDLYYNNAYY 123
           Y+ CSPSCFV A +Y+ R+L   H   +++ S +VHRLLITSV+V+AKF DD ++NNA+Y
Sbjct: 89  YSECSPSCFVLALIYMERYLQQPH---VYMTSLSVHRLLITSVVVAAKFTDDAFFNNAFY 148

Query: 124 AKVGGISTMEMNHLELDFLFGLRFQLNVSPNTFHIYCSYLQSEMLSTTQPKLQIQTPIEQ 183
           A+VGGIST+EMN LELD LF L F+L V   TF  YC  L+ E +      L I  PI+Q
Sbjct: 149 ARVGGISTVEMNRLELDLLFNLDFRLKVDLETFGSYCLQLEKETM-----VLVIDRPIQQ 202

Query: 184 LH 185
           +H
Sbjct: 209 VH 202

[Close]
BLAST of Csa4G025110 vs. TrEMBL
Match: A0A0A0KZ83_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G025110 PE=4 SV=1)

HSP 1 Score: 400.6 bits (1028), Expect = 1.1e-108
Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 1 

Query: 1   MGEKEGMVGIPKVINYLSSVLQRVSDSNDKENRMITKRNNSGFDGISRPSISIQSYLERI 60
           MGEKEGMVGIPKVINYLSSVLQRVSDSNDKENRMITKRNNSGFDGISRPSISIQSYLERI
Sbjct: 1   MGEKEGMVGIPKVINYLSSVLQRVSDSNDKENRMITKRNNSGFDGISRPSISIQSYLERI 60

Query: 61  FKYANCSPSCFVAAYVYLHRFLHNHHPSNLHIDSFNVHRLLITSVLVSAKFFDDLYYNNA 120
           FKYANCSPSCFVAAYVYLHRFLHNHHPSNLHIDSFNVHRLLITSVLVSAKFFDDLYYNNA
Sbjct: 61  FKYANCSPSCFVAAYVYLHRFLHNHHPSNLHIDSFNVHRLLITSVLVSAKFFDDLYYNNA 120

Query: 121 YYAKVGGISTMEMNHLELDFLFGLRFQLNVSPNTFHIYCSYLQSEMLSTTQPKLQIQTPI 180
           YYAKVGGISTMEMNHLELDFLFGLRFQLNVSPNTFHIYCSYLQSEMLSTTQPKLQIQTPI
Sbjct: 121 YYAKVGGISTMEMNHLELDFLFGLRFQLNVSPNTFHIYCSYLQSEMLSTTQPKLQIQTPI 180

Query: 181 EQLHSFPEDPEARLTV 197
           EQLHSFPEDPEARLTV
Sbjct: 181 EQLHSFPEDPEARLTV 196

[Close]
BLAST of Csa4G025110 vs. TrEMBL
Match: V4LH68_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10001641mg PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 4.4e-57
Identity = 123/190 (64.74%), Postives = 143/190 (75.26%), Query Frame = 1 

Query: 1   MGEKEGMVGIPKVINYLSSVLQRVSDSNDKENRMITKRNN-SGFDGISRPSISIQSYLER 60
           M E E    +PK+I +LSS+L+RV++SND+  R+ T+    S F G+SRP+I+IQSYLER
Sbjct: 1   MAELEKAGVMPKLIAFLSSLLERVAESNDRTRRVTTQSQRVSVFHGLSRPTITIQSYLER 60

Query: 61  IFKYANCSPSCFVAAYVYLHRFLHNHHPSNLHIDSFNVHRLLITSVLVSAKFFDDLYYNN 120
           IFKYANCSPSCFV AYVYL RF H   PS L I+SFNVHRLLITSV+VSAKF DDLYYNN
Sbjct: 61  IFKYANCSPSCFVVAYVYLDRFTHRQ-PS-LPINSFNVHRLLITSVMVSAKFLDDLYYNN 120

Query: 121 AYYAKVGGISTMEMNHLELDFLFGLRFQLNVSPNTFHIYCSYLQSEMLSTTQPKLQIQTP 180
           AYYAKVGGIST EMN LELDFLFGL F LNV+PNTFH Y SYLQ EM       L +  P
Sbjct: 121 AYYAKVGGISTKEMNLLELDFLFGLGFDLNVTPNTFHAYFSYLQKEMTLLQPLSLVVVAP 180

Query: 181 IEQLHSFPED 190
              + +F +D
Sbjct: 181 PRSVITFNDD 188

[Close]
BLAST of Csa4G025110 vs. TrEMBL
Match: B9RA01_RICCO (Cyclin-dependent protein kinase, putative OS=Ricinus communis GN=RCOM_1502450 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 1.3e-56
Identity = 118/174 (67.82%), Postives = 140/174 (80.46%), Query Frame = 1 

Query: 7   MVGIPKVINYLSSVLQRVSDSNDKENRMITKRNNSGFDGISRPSISIQSYLERIFKYANC 66
           +V +PKV+ +LSS+LQRV++SND  +++  +R  S F G++RPSIS+QSYLERIFKYANC
Sbjct: 8   VVVMPKVVTFLSSLLQRVAESNDLSHQLHPQRI-SVFHGLTRPSISVQSYLERIFKYANC 67

Query: 67  SPSCFVAAYVYLHRFLHNHHPSNLHIDSFNVHRLLITSVLVSAKFFDDLYYNNAYYAKVG 126
           SPSCFV AYVYL RF     PS   I+SFNVHRLLITSVLVSAKF DD+YYNNAYYAKVG
Sbjct: 68  SPSCFVIAYVYLDRFAQRQ-PS-FPINSFNVHRLLITSVLVSAKFMDDIYYNNAYYAKVG 127

Query: 127 GISTMEMNHLELDFLFGLRFQLNVSPNTFHIYCSYLQSEMLSTTQPKLQIQTPI 181
           GIST EMN LE+DFLFGL FQLNV+PNTFH YCSYLQ EML  +     ++ P+
Sbjct: 128 GISTSEMNILEVDFLFGLGFQLNVTPNTFHTYCSYLQREMLVQSSQHQLVEPPL 178

[Close]
BLAST of Csa4G025110 vs. TrEMBL
Match: A0A0D2RJK5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G213300 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 1.3e-56
Identity = 118/183 (64.48%), Postives = 146/183 (79.78%), Query Frame = 1 

Query: 1   MGEKEGMVGIPKVINYLSSVLQRVSDSNDKENRMITKRNNSGFDGISRPSISIQSYLERI 60
           + +K+    +PK+I +LSS+LQRV++SND   R+   +  S F G++RP+ISI+SYLERI
Sbjct: 10  INDKDDQETVPKIITFLSSLLQRVAESND-HCRLFQSQKISVFHGLTRPTISIKSYLERI 69

Query: 61  FKYANCSPSCFVAAYVYLHRFLHNHHPSNLHIDSFNVHRLLITSVLVSAKFFDDLYYNNA 120
           FKYANCSPSCFV AYVYL RF+    PS L I+S+NVHRLLITSVLVSAKF DD+YYNNA
Sbjct: 70  FKYANCSPSCFVVAYVYLDRFVQMQ-PS-LPINSYNVHRLLITSVLVSAKFMDDMYYNNA 129

Query: 121 YYAKVGGISTMEMNHLELDFLFGLRFQLNVSPNTFHIYCSYLQSEMLSTTQPKLQIQTPI 180
           YYAKVGGIST+EMN LE+DFLFGL FQLNV+P TFH YC++LQ EM       +QIQ+P+
Sbjct: 130 YYAKVGGISTVEMNLLEVDFLFGLGFQLNVAPTTFHTYCTFLQREMC------MQIQSPL 183

Query: 181 EQL 184
           +QL
Sbjct: 190 QQL 183

[Close]
BLAST of Csa4G025110 vs. TrEMBL
Match: B9MV61_POPTR (Cyclin family protein OS=Populus trichocarpa GN=POPTR_0014s04930g PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 1.3e-56
Identity = 121/176 (68.75%), Postives = 138/176 (78.41%), Query Frame = 1 

Query: 1   MGEKEGMVGIPKVINYLSSVLQRVSDSNDKENRMITKRNNSGFDGISRPSISIQSYLERI 60
           M E E    +PK I +LSS+LQRV+DSND  NR    +  S F G++RP+ISIQSYLERI
Sbjct: 1   MAELESTKMMPKSITFLSSLLQRVADSNDL-NREFQPQKISVFHGLTRPTISIQSYLERI 60

Query: 61  FKYANCSPSCFVAAYVYLHRFLHNHHPSNLHIDSFNVHRLLITSVLVSAKFFDDLYYNNA 120
           FKYANCSPSCFV AYVYL RF     PS L I+S NVHRLLITSVLVSAKF DD+YYNNA
Sbjct: 61  FKYANCSPSCFVVAYVYLDRFAQRQ-PS-LPINSLNVHRLLITSVLVSAKFMDDMYYNNA 120

Query: 121 YYAKVGGISTMEMNHLELDFLFGLRFQLNVSPNTFHIYCSYLQSEMLSTTQPKLQI 177
           YYA+VGGIST+EMN+LE+DFLFGL F LNV+PNTFH YCSYLQ EM+   QP L +
Sbjct: 121 YYARVGGISTIEMNYLEVDFLFGLGFNLNVTPNTFHTYCSYLQREMMQ--QPSLNL 171

[Close]
BLAST of Csa4G025110 vs. TAIR10
Match: AT2G44740.1 (AT2G44740.1 cyclin p4;1)

HSP 1 Score: 221.1 bits (562), Expect = 6.1e-58
Identity = 120/190 (63.16%), Postives = 139/190 (73.16%), Query Frame = 1 

Query: 1   MGEKEGMVGIPKVINYLSSVLQRVSDSNDKENRMITKRNN-SGFDGISRPSISIQSYLER 60
           M E E    + K+I +LSS+L+RV++SND   R+ T+    S F G+SRP+I+IQSYLER
Sbjct: 1   MAELENPSVMSKLIAFLSSLLERVAESNDLTRRVATQSQRVSVFHGLSRPTITIQSYLER 60

Query: 61  IFKYANCSPSCFVAAYVYLHRFLHNHHPSNLHIDSFNVHRLLITSVLVSAKFFDDLYYNN 120
           IFKYANCSPSCFV AYVYL RF H   PS L I+SFNVHRLLITSV+V+AKF DDLYYNN
Sbjct: 61  IFKYANCSPSCFVVAYVYLDRFTHRQ-PS-LPINSFNVHRLLITSVMVAAKFLDDLYYNN 120

Query: 121 AYYAKVGGISTMEMNHLELDFLFGLRFQLNVSPNTFHIYCSYLQSEMLSTTQPKLQIQTP 180
           AYYAKVGGIST EMN LELDFLFGL F+LNV+PNTF+ Y SYLQ EM       L +   
Sbjct: 121 AYYAKVGGISTKEMNFLELDFLFGLGFELNVTPNTFNAYFSYLQKEMTLLQPLSLVVVPS 180

Query: 181 IEQLHSFPED 190
              L +F +D
Sbjct: 181 SRSLITFNDD 188

[Close]
BLAST of Csa4G025110 vs. TAIR10
Match: AT5G07450.1 (AT5G07450.1 cyclin p4;3)

HSP 1 Score: 190.7 bits (483), Expect = 8.8e-49
Identity = 98/162 (60.49%), Postives = 123/162 (75.93%), Query Frame = 1 

Query: 10  IPKVINYLSSVLQRVSDSNDKENRMITKRNN-SGFDGISRPSISIQSYLERIFKYANCSP 69
           +P VI  +SS+LQRVS++ND  +R   +    S F+ +++PSISI+SY+ERIFKYA+CS 
Sbjct: 20  MPNVITAMSSLLQRVSETNDDLSRPFREHKRISAFNAVTKPSISIRSYMERIFKYADCSD 79

Query: 70  SCFVAAYVYLHRFLHNHHPSNLHIDSFNVHRLLITSVLVSAKFFDDLYYNNAYYAKVGGI 129
           SC++ AY+YL RF+       L IDS NVHRL+ITSVLVSAKF DDL YNNA+YAKVGGI
Sbjct: 80  SCYIVAYIYLDRFIQKQ--PLLPIDSSNVHRLIITSVLVSAKFMDDLCYNNAFYAKVGGI 139

Query: 130 STMEMNHLELDFLFGLRFQLNVSPNTFHIYCSYLQSEMLSTT 171
           +T EMN LELDFLFG+ FQLNV+ +T++ YCS LQ EM+  T
Sbjct: 140 TTEEMNLLELDFLFGIGFQLNVTISTYNDYCSSLQREMVMRT 179

[Close]
BLAST of Csa4G025110 vs. TAIR10
Match: AT5G61650.1 (AT5G61650.1 CYCLIN P4;2)

HSP 1 Score: 188.0 bits (476), Expect = 5.7e-48
Identity = 96/157 (61.15%), Postives = 120/157 (76.43%), Query Frame = 1 

Query: 10  IPKVINYLSSVLQRVSDSNDKENRMITKRNNSGFDGISRPSISIQSYLERIFKYANCSPS 69
           +P V+  +S +LQRVS++ND  ++   K+  S F G+++PSISI+SYLERIF+YANCS S
Sbjct: 22  MPSVLTAMSYLLQRVSETNDNLSQ---KQKPSSFTGVTKPSISIRSYLERIFEYANCSYS 81

Query: 70  CFVAAYVYLHRFLHNHHPSNLHIDSFNVHRLLITSVLVSAKFFDDLYYNNAYYAKVGGIS 129
           C++ AY+YL RF+       L I+SFNVHRL+ITSVLVSAKF DDL YNN YYAKVGGIS
Sbjct: 82  CYIVAYIYLDRFVKKQ--PFLPINSFNVHRLIITSVLVSAKFMDDLSYNNEYYAKVGGIS 141

Query: 130 TMEMNHLELDFLFGLRFQLNVSPNTFHIYCSYLQSEM 167
             EMN LELDFLFG+ F+LNV+ +TF+ YC +LQ EM
Sbjct: 142 REEMNMLELDFLFGIGFELNVTVSTFNNYCCFLQREM 173

[Close]
BLAST of Csa4G025110 vs. TAIR10
Match: AT3G63120.1 (AT3G63120.1 cyclin p1;1)

HSP 1 Score: 152.9 bits (385), Expect = 2.0e-37
Identity = 79/173 (45.66%), Postives = 113/173 (65.32%), Query Frame = 1 

Query: 11  PKVINYLSSVLQRVSDSNDKENRMITKRNN-SGFDGISRPSISIQSYLERIFKYANCSPS 70
           P V++ LSS L+R    N  +  ++   ++ + FDG S P ISI  YL+RIFKY+ CSPS
Sbjct: 32  PTVLSRLSSSLERSLLLNHDDKILLGSPDSVTVFDGRSPPEISIAHYLDRIFKYSCCSPS 91

Query: 71  CFVAAYVYLHRFLHNHHPSNLHIDSFNVHRLLITSVLVSAKFFDDLYYNNAYYAKVGGIS 130
           CFV A++Y+  FLH    +   +   NVHRL+IT+V+++AK FDD Y+NNAYYA+VGG++
Sbjct: 92  CFVIAHIYIDHFLHK---TRALLKPLNVHRLIITTVMLAAKVFDDRYFNNAYYARVGGVT 151

Query: 131 TMEMNHLELDFLFGLRFQLNVSPNTFHIYCSYLQSEMLSTTQPKLQIQTPIEQ 183
           T E+N LE++ LF L F+L V P TFH +C  L+ +     +   QI+ PI++
Sbjct: 152 TRELNRLEMELLFTLDFKLQVDPQTFHTHCCQLEKQ----NRDGFQIEWPIKE 197

[Close]
BLAST of Csa4G025110 vs. TAIR10
Match: AT3G21870.1 (AT3G21870.1 cyclin p2;1)

HSP 1 Score: 146.4 bits (368), Expect = 1.9e-35
Identity = 78/186 (41.94%), Postives = 112/186 (60.22%), Query Frame = 1 

Query: 11  PKVINYLSSVLQRVSDSND---KENRMITKRNNSGFDGISRPSISIQSYLERIFKYANCS 70
           P+V+  +S V++++   N+   K+ +   K +   F G+  PSISI  YLERI+KY  CS
Sbjct: 25  PRVLTIISHVMEKLVARNEWLAKQTKGFGK-SLEAFHGVRAPSISIAKYLERIYKYTKCS 84

Query: 71  PSCFVAAYVYLHRFLHNHHPSNLHIDSFNVHRLLITSVLVSAKFFDDLYYNNAYYAKVGG 130
           P+CFV  YVY+ R  H H P +L + S NVHRLL+T V+++AK  DD++YNN +YA+VGG
Sbjct: 85  PACFVVGYVYIDRLAHKH-PGSLVV-SLNVHRLLVTCVMIAAKILDDVHYNNEFYARVGG 144

Query: 131 ISTMEMNHLELDFLFGLRFQLNVSPNTFHIYCSYLQSEM--------LSTTQPKLQIQTP 186
           +S  ++N +EL+ LF L F++ VS   F  YC +L+ EM        L   QP  +  +P
Sbjct: 145 VSNADLNKMELELLFLLDFRVTVSFRVFESYCFHLEKEMQLNDAVSSLKDIQPMQESLSP 204

[Close]
BLAST of Csa4G025110 vs. NCBI nr
Match: gi|449458397|ref|XP_004146934.1| (PREDICTED: cyclin-U4-1-like [Cucumis sativus])

HSP 1 Score: 400.6 bits (1028), Expect = 1.6e-108
Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 1 

Query: 1   MGEKEGMVGIPKVINYLSSVLQRVSDSNDKENRMITKRNNSGFDGISRPSISIQSYLERI 60
           MGEKEGMVGIPKVINYLSSVLQRVSDSNDKENRMITKRNNSGFDGISRPSISIQSYLERI
Sbjct: 1   MGEKEGMVGIPKVINYLSSVLQRVSDSNDKENRMITKRNNSGFDGISRPSISIQSYLERI 60

Query: 61  FKYANCSPSCFVAAYVYLHRFLHNHHPSNLHIDSFNVHRLLITSVLVSAKFFDDLYYNNA 120
           FKYANCSPSCFVAAYVYLHRFLHNHHPSNLHIDSFNVHRLLITSVLVSAKFFDDLYYNNA
Sbjct: 61  FKYANCSPSCFVAAYVYLHRFLHNHHPSNLHIDSFNVHRLLITSVLVSAKFFDDLYYNNA 120

Query: 121 YYAKVGGISTMEMNHLELDFLFGLRFQLNVSPNTFHIYCSYLQSEMLSTTQPKLQIQTPI 180
           YYAKVGGISTMEMNHLELDFLFGLRFQLNVSPNTFHIYCSYLQSEMLSTTQPKLQIQTPI
Sbjct: 121 YYAKVGGISTMEMNHLELDFLFGLRFQLNVSPNTFHIYCSYLQSEMLSTTQPKLQIQTPI 180

Query: 181 EQLHSFPEDPEARLTV 197
           EQLHSFPEDPEARLTV
Sbjct: 181 EQLHSFPEDPEARLTV 196

[Close]
BLAST of Csa4G025110 vs. NCBI nr
Match: gi|659107765|ref|XP_008453846.1| (PREDICTED: cyclin-U4-1-like [Cucumis melo])

HSP 1 Score: 355.5 bits (911), Expect = 5.9e-95
Identity = 179/198 (90.40%), Postives = 186/198 (93.94%), Query Frame = 1 

Query: 1   MGEKEGMVGIPKVINYLSSVLQRVSDSNDKENRMI---TKRNN-SGFDGISRPSISIQSY 60
           +GEKE MVGIPKVINYLSSVLQRVS+SND+E+RM+   TKRNN SGFDGISRPSISIQSY
Sbjct: 4   VGEKEEMVGIPKVINYLSSVLQRVSESNDQEDRMMNNGTKRNNYSGFDGISRPSISIQSY 63

Query: 61  LERIFKYANCSPSCFVAAYVYLHRFLHNHHPSNLHIDSFNVHRLLITSVLVSAKFFDDLY 120
           LERIFKYANCSPSCFV AYVYLHRFLHNHHPSN HIDSFNVHRLLITSVLVSAKFFDDLY
Sbjct: 64  LERIFKYANCSPSCFVVAYVYLHRFLHNHHPSNFHIDSFNVHRLLITSVLVSAKFFDDLY 123

Query: 121 YNNAYYAKVGGISTMEMNHLELDFLFGLRFQLNVSPNTFHIYCSYLQSEMLSTTQPKLQI 180
           YNNAYYAKVGGISTMEMN LELDFLFGLRFQLNVSPNTFHIYCSYLQSEML TTQPKLQI
Sbjct: 124 YNNAYYAKVGGISTMEMNLLELDFLFGLRFQLNVSPNTFHIYCSYLQSEMLLTTQPKLQI 183

Query: 181 QTPIEQLHSFPEDPEARL 195
           QTPI+QLHSF ED +A L
Sbjct: 184 QTPIKQLHSFTEDQDASL 201

[Close]
BLAST of Csa4G025110 vs. NCBI nr
Match: gi|567165837|ref|XP_006397655.1| (hypothetical protein EUTSA_v10001641mg [Eutrema salsugineum])

HSP 1 Score: 229.2 bits (583), Expect = 6.3e-57
Identity = 123/190 (64.74%), Postives = 143/190 (75.26%), Query Frame = 1 

Query: 1   MGEKEGMVGIPKVINYLSSVLQRVSDSNDKENRMITKRNN-SGFDGISRPSISIQSYLER 60
           M E E    +PK+I +LSS+L+RV++SND+  R+ T+    S F G+SRP+I+IQSYLER
Sbjct: 1   MAELEKAGVMPKLIAFLSSLLERVAESNDRTRRVTTQSQRVSVFHGLSRPTITIQSYLER 60

Query: 61  IFKYANCSPSCFVAAYVYLHRFLHNHHPSNLHIDSFNVHRLLITSVLVSAKFFDDLYYNN 120
           IFKYANCSPSCFV AYVYL RF H   PS L I+SFNVHRLLITSV+VSAKF DDLYYNN
Sbjct: 61  IFKYANCSPSCFVVAYVYLDRFTHRQ-PS-LPINSFNVHRLLITSVMVSAKFLDDLYYNN 120

Query: 121 AYYAKVGGISTMEMNHLELDFLFGLRFQLNVSPNTFHIYCSYLQSEMLSTTQPKLQIQTP 180
           AYYAKVGGIST EMN LELDFLFGL F LNV+PNTFH Y SYLQ EM       L +  P
Sbjct: 121 AYYAKVGGISTKEMNLLELDFLFGLGFDLNVTPNTFHAYFSYLQKEMTLLQPLSLVVVAP 180

Query: 181 IEQLHSFPED 190
              + +F +D
Sbjct: 181 PRSVITFNDD 188

[Close]
BLAST of Csa4G025110 vs. NCBI nr
Match: gi|802770022|ref|XP_012090519.1| (PREDICTED: cyclin-U4-1 [Jatropha curcas])

HSP 1 Score: 227.6 bits (579), Expect = 1.8e-56
Identity = 120/180 (66.67%), Postives = 144/180 (80.00%), Query Frame = 1 

Query: 1   MGEKEGMVGIPKVINYLSSVLQRVSDSNDKENRMITKRNNSGFDGISRPSISIQSYLERI 60
           M + E    +PKVI++LSS+LQRV++SND  +++  +R  S F G++RP+ISIQ+YLERI
Sbjct: 1   MADLEASEAMPKVISFLSSLLQRVAESNDLRSQLYPQRI-SVFHGLTRPNISIQTYLERI 60

Query: 61  FKYANCSPSCFVAAYVYLHRFLHNHHPSNLHIDSFNVHRLLITSVLVSAKFFDDLYYNNA 120
           FKYANCSPSCFV AYVYL RF     PS L I+SFNVHRLLITSVLVSAKF DD+YYNNA
Sbjct: 61  FKYANCSPSCFVVAYVYLDRFAQRQ-PS-LPINSFNVHRLLITSVLVSAKFMDDIYYNNA 120

Query: 121 YYAKVGGISTMEMNHLELDFLFGLRFQLNVSPNTFHIYCSYLQSEMLSTTQPKLQIQTPI 180
           YYAKVGGIST EMN LE+DFLFGL FQLNV+P TFH YCSYLQ EML  +  +L ++ P+
Sbjct: 121 YYAKVGGISTAEMNVLEVDFLFGLGFQLNVAPTTFHTYCSYLQREMLMQSPVQL-VEPPL 176

[Close]
BLAST of Csa4G025110 vs. NCBI nr
Match: gi|255539923|ref|XP_002511026.1| (PREDICTED: cyclin-U4-1 [Ricinus communis])

HSP 1 Score: 227.6 bits (579), Expect = 1.8e-56
Identity = 118/174 (67.82%), Postives = 140/174 (80.46%), Query Frame = 1 

Query: 7   MVGIPKVINYLSSVLQRVSDSNDKENRMITKRNNSGFDGISRPSISIQSYLERIFKYANC 66
           +V +PKV+ +LSS+LQRV++SND  +++  +R  S F G++RPSIS+QSYLERIFKYANC
Sbjct: 8   VVVMPKVVTFLSSLLQRVAESNDLSHQLHPQRI-SVFHGLTRPSISVQSYLERIFKYANC 67

Query: 67  SPSCFVAAYVYLHRFLHNHHPSNLHIDSFNVHRLLITSVLVSAKFFDDLYYNNAYYAKVG 126
           SPSCFV AYVYL RF     PS   I+SFNVHRLLITSVLVSAKF DD+YYNNAYYAKVG
Sbjct: 68  SPSCFVIAYVYLDRFAQRQ-PS-FPINSFNVHRLLITSVLVSAKFMDDIYYNNAYYAKVG 127

Query: 127 GISTMEMNHLELDFLFGLRFQLNVSPNTFHIYCSYLQSEMLSTTQPKLQIQTPI 181
           GIST EMN LE+DFLFGL FQLNV+PNTFH YCSYLQ EML  +     ++ P+
Sbjct: 128 GISTSEMNILEVDFLFGLGFQLNVTPNTFHTYCSYLQREMLVQSSQHQLVEPPL 178

The following BLAST results are available for this feature:
BLAST of Csa4G025110 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CCU41_ARATH1.1e-5663.16Cyclin-U4-1 OS=Arabidopsis thaliana GN=CYCU4-1 PE=1 SV=1[more]
CCP41_ORYSJ9.2e-4853.23Cyclin-P4-1 OS=Oryza sativa subsp. japonica GN=CYCP4-1 PE=2 SV=1[more]
CCU42_ARATH1.6e-4760.49Cyclin-U4-2 OS=Arabidopsis thaliana GN=CYCU4-2 PE=1 SV=1[more]
CCU43_ARATH1.0e-4661.15Cyclin-U4-3 OS=Arabidopsis thaliana GN=CYCU4-3 PE=1 SV=1[more]
CCP31_ORYSJ4.3e-3747.25Cyclin-P3-1 OS=Oryza sativa subsp. japonica GN=CYCP3-1 PE=3 SV=1[more]
BLAST of Csa4G025110 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZ83_CUCSA1.1e-108100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G025110 PE=4 SV=1[more]
V4LH68_EUTSA4.4e-5764.74Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10001641mg PE=4 SV=1[more]
B9RA01_RICCO1.3e-5667.82Cyclin-dependent protein kinase, putative OS=Ricinus communis GN=RCOM_1502450 PE... [more]
A0A0D2RJK5_GOSRA1.3e-5664.48Uncharacterized protein OS=Gossypium raimondii GN=B456_008G213300 PE=4 SV=1[more]
B9MV61_POPTR1.3e-5668.75Cyclin family protein OS=Populus trichocarpa GN=POPTR_0014s04930g PE=4 SV=1[more]
BLAST of Csa4G025110 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G44740.16.1e-5863.16 cyclin p4;1[more]
AT5G07450.18.8e-4960.49 cyclin p4;3[more]
AT5G61650.15.7e-4861.15 CYCLIN P4;2[more]
AT3G63120.12.0e-3745.66 cyclin p1;1[more]
AT3G21870.11.9e-3541.94 cyclin p2;1[more]
BLAST of Csa4G025110 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449458397|ref|XP_004146934.1|1.6e-108100.00PREDICTED: cyclin-U4-1-like [Cucumis sativus][more]
gi|659107765|ref|XP_008453846.1|5.9e-9590.40PREDICTED: cyclin-U4-1-like [Cucumis melo][more]
gi|567165837|ref|XP_006397655.1|6.3e-5764.74hypothetical protein EUTSA_v10001641mg [Eutrema salsugineum][more]
gi|802770022|ref|XP_012090519.1|1.8e-5666.67PREDICTED: cyclin-U4-1 [Jatropha curcas][more]
gi|255539923|ref|XP_002511026.1|1.8e-5667.82PREDICTED: cyclin-U4-1 [Ricinus communis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012389Cyclin_P/U
IPR013763Cyclin-like
IPR013922Cyclin_PHO80-like
Vocabulary: Biological Process
TermDefinition
GO:0000079regulation of cyclin-dependent protein serine/threonine kinase activity
Vocabulary: Molecular Function
TermDefinition
GO:0019901protein kinase binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity
biological_process GO:0010440 stomatal lineage progression
cellular_component GO:0005575 cellular_component
molecular_function GO:0019901 protein kinase binding
molecular_function GO:0016301 kinase activity
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU119564cucumber EST collection version 3.0transcribed_cluster
CU136062cucumber EST collection version 3.0transcribed_cluster
CU138540cucumber EST collection version 3.0transcribed_cluster
CU158012cucumber EST collection version 3.0transcribed_cluster
CU172155cucumber EST collection version 3.0transcribed_cluster
CU172896cucumber EST collection version 3.0transcribed_cluster
CU176163cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G025110.1Csa4G025110.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU172155CU172155transcribed_cluster
CU176163CU176163transcribed_cluster
CU158012CU158012transcribed_cluster
CU138540CU138540transcribed_cluster
CU136062CU136062transcribed_cluster
CU172896CU172896transcribed_cluster
CU119564CU119564transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012389Cyclin P/UPIRPIRSF027110PREGcoord: 3..191
score: 1.9
IPR013763Cyclin-likeGENE3DG3DSA:1.10.472.10coord: 62..149
score: 7.
IPR013763Cyclin-likeunknownSSF47954Cyclin-likecoord: 55..149
score: 9.08
IPR013922Cyclin PHO80-likePFAMPF08613Cyclincoord: 22..148
score: 3.0
NoneNo IPR availablePANTHERPTHR15615UNCHARACTERIZEDcoord: 10..167
score: 2.1
NoneNo IPR availablePANTHERPTHR15615:SF28CYCLIN-U4-1coord: 10..167
score: 2.1