CSPI04G04260 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI04G04260
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	cyclin p4;1
Location	Chr4 : 2781792 .. 2782579 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GATCGATAATATTGAATGGGAGAAAAAGAAGGAATGGTTGGGATTCCCAAAGTCATAAACTATCTATCCTCTGTTCTACAGAGAGTTTCAGATTCCAATGACAAAGAAAACAGGATGATTACCAAAAGGAATAATTCAGGTTTTGATGGAATATCAAGACCAAGCATTTCCATACAAAGTTATTTAGAGAGGATCTTTAAGTATGCAAACTGTAGTCCAAGTTGCTTTGTTGCTGCTTATGTTTATCTTCATCGCTTTCTTCACAATCATCATCCTTCCAATCTTCATATTGATTCCTTCAACGTTCATAGACTTCTCATTACAAGTGTTCTTGTTTCTGCCAAGTTCTTCGATGATCTGTAAGTTCTTCTTCTTCTTCTTCTTTCAATATTTCTGCCAACTTTCCTCATTATCTTCTTCTTCTTCTTTCTTTAAACCTATCATGTTCGAATGTTTATTGATTCATTCCATAAAATCCTTGAAATAGATGAATTAATTGTTTCGGGATATATATGTAATTTTCTGTTCAGGTATTACAACAATGCTTACTATGCAAAAGTTGGTGGAATAAGCACCATGGAAATGAACCATCTTGAATTGGATTTCTTATTTGGTTTGAGATTCCAATTAAATGTATCACCAAACACATTTCACATTTACTGCTCTTATCTCCAATCAGAAATGCTATCAACAACACAACCCAAACTCCAAATCCAAACACCTATAGAACAGCTCCATTCCTTCCCAGAAGATCCAGAAGCGCGCTTGACGGTTTGAGCCATCTCGGC

mRNA sequence

ATGGGAGAAAAAGAAGGAATGGTTGGGATTCCCAAAGTCATAAACTATCTATCCTCTGTTCTACAGAGAGTTTCAGATTCCAATGACAAAGAAAACAGGATGATTACCAAAAGGAATAATTCAGGTTTTGATGGAATATCAAGACCAAGCATTTCCATACAAAGTTATTTAGAGAGGATCTTTAAGTATGCAAACTGTAGTCCAAGTTGCTTTGTTGCTGCTTATGTTTATCTTCATCGCTTTCTTCACAATCATCATCCTTCCAATCTTCATATTGATTCCTTCAACGTTCATAGACTTCTCATTACAAGTGTTCTTGTTTCTGCCAAGTTCTTCGATGATCTGTATTACAACAATGCTTACTATGCAAAAGTTGGTGGAATAAGCACCATGGAAATGAACCATCTTGAATTGGATTTCTTATTTGGTTTGAGATTCCAATTAAATGTATCACCAAACACATTTCACATTTACTGCTCTTATCTCCAATCAGAAATGCTATCAACAACACAACCCAAACTCCAAATCCAAACACCTATAGAACAGCTCCATTCCTTCCCAGAAGATCCAGAAGCGCGCTTGACGGTTTGA

Coding sequence (CDS)

ATGGGAGAAAAAGAAGGAATGGTTGGGATTCCCAAAGTCATAAACTATCTATCCTCTGTTCTACAGAGAGTTTCAGATTCCAATGACAAAGAAAACAGGATGATTACCAAAAGGAATAATTCAGGTTTTGATGGAATATCAAGACCAAGCATTTCCATACAAAGTTATTTAGAGAGGATCTTTAAGTATGCAAACTGTAGTCCAAGTTGCTTTGTTGCTGCTTATGTTTATCTTCATCGCTTTCTTCACAATCATCATCCTTCCAATCTTCATATTGATTCCTTCAACGTTCATAGACTTCTCATTACAAGTGTTCTTGTTTCTGCCAAGTTCTTCGATGATCTGTATTACAACAATGCTTACTATGCAAAAGTTGGTGGAATAAGCACCATGGAAATGAACCATCTTGAATTGGATTTCTTATTTGGTTTGAGATTCCAATTAAATGTATCACCAAACACATTTCACATTTACTGCTCTTATCTCCAATCAGAAATGCTATCAACAACACAACCCAAACTCCAAATCCAAACACCTATAGAACAGCTCCATTCCTTCCCAGAAGATCCAGAAGCGCGCTTGACGGTTTGA

Homology

[Close]

BLAST of CSPI04G04260 vs. Swiss-Prot
Match: CCU41_ARATH (Cyclin-U4-1 OS=Arabidopsis thaliana GN=CYCU4-1 PE=1 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 2.0e-55
Identity = 120/190 (63.16%), Postives = 141/190 (74.21%), Query Frame = 1


Query: 1   MGEKEGMVGIPKVINYLSSVLQRVSDSNDKENRMITKRNN-SGFDGISRPSISIQSYLER 60
           M E E    + K+I +LSS+L+RV++SND   R+ T+    S F G+SRP+I+IQSYLER
Sbjct: 1   MAELENPSVMSKLIAFLSSLLERVAESNDLTRRVATQSQRVSVFHGLSRPTITIQSYLER 60

Query: 61  IFKYANCSPSCFVAAYVYLHRFLHNHHPSNLHIDSFNVHRLLITSVLVSAKFFDDLYYNN 120
           IFKYANCSPSCFV AYVYL RF H   PS L I+SFNVHRLLITSV+V+AKF DDLYYNN
Sbjct: 61  IFKYANCSPSCFVVAYVYLDRFTHRQ-PS-LPINSFNVHRLLITSVMVAAKFLDDLYYNN 120

Query: 121 AYYAKVGGISTMEMNHLELDFLFGLRFQLNVSPNTFHIYCSYLQSEMLSTTQPKLQIQTP 180
           AYYAKVGGIST EMN LELDFLFGL F+LNV+PNTF+ Y SYLQ EM       L +   
Sbjct: 121 AYYAKVGGISTKEMNFLELDFLFGLGFELNVTPNTFNAYFSYLQKEMTLLQPLSLVVVPS 180

Query: 181 IEQLHSFPED 190
              L +F +D
Sbjct: 181 SRSLITFNDD 188

[Close]

BLAST of CSPI04G04260 vs. Swiss-Prot
Match: CCU42_ARATH (Cyclin-U4-2 OS=Arabidopsis thaliana GN=CYCU4-2 PE=1 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 2.3e-46
Identity = 98/162 (60.49%), Postives = 125/162 (77.16%), Query Frame = 1


Query: 10  IPKVINYLSSVLQRVSDSNDKENRMITKRNN-SGFDGISRPSISIQSYLERIFKYANCSP 69
           +P VI  +SS+LQRVS++ND  +R   +    S F+ +++PSISI+SY+ERIFKYA+CS 
Sbjct: 20  MPNVITAMSSLLQRVSETNDDLSRPFREHKRISAFNAVTKPSISIRSYMERIFKYADCSD 79

Query: 70  SCFVAAYVYLHRFLHNHHPSNLHIDSFNVHRLLITSVLVSAKFFDDLYYNNAYYAKVGGI 129
           SC++ AY+YL RF+       L IDS NVHRL+ITSVLVSAKF DDL YNNA+YAKVGGI
Sbjct: 80  SCYIVAYIYLDRFIQKQ--PLLPIDSSNVHRLIITSVLVSAKFMDDLCYNNAFYAKVGGI 139

Query: 130 STMEMNHLELDFLFGLRFQLNVSPNTFHIYCSYLQSEMLSTT 171
           +T EMN LELDFLFG+ FQLNV+ +T++ YCS LQ EM+  T
Sbjct: 140 TTEEMNLLELDFLFGIGFQLNVTISTYNDYCSSLQREMVMRT 179

[Close]

BLAST of CSPI04G04260 vs. Swiss-Prot
Match: CCP41_ORYSJ (Cyclin-P4-1 OS=Oryza sativa subsp. japonica GN=CYCP4-1 PE=2 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 3.0e-46
Identity = 99/186 (53.23%), Postives = 126/186 (67.74%), Query Frame = 1


Query: 10  IPKVINYLSSVLQRVSDSNDKENRMITKRNN----SGFDGISRPSISIQSYLERIFKYAN 69
           +P+V+  LSS+LQRV++ ND               S F G+++P+ISI  YLERIF++AN
Sbjct: 10  VPRVVAILSSLLQRVAERNDAAAAAAAVGEEAAAVSAFQGLTKPAISIGGYLERIFRFAN 69

Query: 70  CSPSCFVAAYVYLHRFLHNHHPSNLHIDSFNVHRLLITSVLVSAKFFDDLYYNNAYYAKV 129
           CSPSC+V AY+YL RFL       L +DSFNVHRLLITSVL + KF DD+ YNNAY+A+V
Sbjct: 70  CSPSCYVVAYIYLDRFLRRRPA--LAVDSFNVHRLLITSVLTAVKFVDDICYNNAYFARV 129

Query: 130 GGISTMEMNHLELDFLFGLRFQLNVSPNTFHIYCSYLQSEMLSTTQPKLQIQTPIEQLHS 189
           GGIS MEMN+LE+DFLFG+ F LNV+P  F  YC+ LQSEM    QP       + +LH 
Sbjct: 130 GGISLMEMNYLEVDFLFGIAFDLNVTPAAFASYCAVLQSEMTYLEQPP---AVDLPRLHC 189

Query: 190 FPEDPE 192
            P D +
Sbjct: 190 CPSDQD 190

[Close]

BLAST of CSPI04G04260 vs. Swiss-Prot
Match: CCU43_ARATH (Cyclin-U4-3 OS=Arabidopsis thaliana GN=CYCU4-3 PE=1 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 1.5e-45
Identity = 96/157 (61.15%), Postives = 122/157 (77.71%), Query Frame = 1


Query: 10  IPKVINYLSSVLQRVSDSNDKENRMITKRNNSGFDGISRPSISIQSYLERIFKYANCSPS 69
           +P V+  +S +LQRVS++ND  ++   K+  S F G+++PSISI+SYLERIF+YANCS S
Sbjct: 22  MPSVLTAMSYLLQRVSETNDNLSQ---KQKPSSFTGVTKPSISIRSYLERIFEYANCSYS 81

Query: 70  CFVAAYVYLHRFLHNHHPSNLHIDSFNVHRLLITSVLVSAKFFDDLYYNNAYYAKVGGIS 129
           C++ AY+YL RF+       L I+SFNVHRL+ITSVLVSAKF DDL YNN YYAKVGGIS
Sbjct: 82  CYIVAYIYLDRFVKKQ--PFLPINSFNVHRLIITSVLVSAKFMDDLSYNNEYYAKVGGIS 141

Query: 130 TMEMNHLELDFLFGLRFQLNVSPNTFHIYCSYLQSEM 167
             EMN LELDFLFG+ F+LNV+ +TF+ YC +LQ EM
Sbjct: 142 REEMNMLELDFLFGIGFELNVTVSTFNNYCCFLQREM 173

[Close]

BLAST of CSPI04G04260 vs. Swiss-Prot
Match: CCP31_ORYSJ (Cyclin-P3-1 OS=Oryza sativa subsp. japonica GN=CYCP3-1 PE=3 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.1e-35
Identity = 86/182 (47.25%), Postives = 117/182 (64.29%), Query Frame = 1


Query: 4   KEGMVGIPKVINYLSSVLQR-VSDSNDKENRMITKRNNSGFDGISRPSISIQSYLERIFK 63
           K+     PKV+  L++ L R V  + D  +    K +++ F G   P +SI+ Y ERIFK
Sbjct: 29  KKNNTEYPKVLLLLAAYLDRSVQKNEDLLDSNKIKDSSTIFHGHRAPDLSIKLYAERIFK 88

Query: 64  YANCSPSCFVAAYVYLHRFLHNHHPSNLHIDSFNVHRLLITSVLVSAKFFDDLYYNNAYY 123
           Y+ CSPSCFV A +Y+ R+L   H   +++ S +VHRLLITSV+V+AKF DD ++NNA+Y
Sbjct: 89  YSECSPSCFVLALIYMERYLQQPH---VYMTSLSVHRLLITSVVVAAKFTDDAFFNNAFY 148

Query: 124 AKVGGISTMEMNHLELDFLFGLRFQLNVSPNTFHIYCSYLQSEMLSTTQPKLQIQTPIEQ 183
           A+VGGIST+EMN LELD LF L F+L V   TF  YC  L+ E +      L I  PI+Q
Sbjct: 149 ARVGGISTVEMNRLELDLLFNLDFRLKVDLETFGSYCLQLEKETM-----VLVIDRPIQQ 202

Query: 184 LH 185
           +H
Sbjct: 209 VH 202

[Close]

BLAST of CSPI04G04260 vs. TrEMBL
Match: A0A0A0KZ83_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G025110 PE=4 SV=1)

HSP 1 Score: 396.4 bits (1017), Expect = 2.1e-107
Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 1


Query: 1   MGEKEGMVGIPKVINYLSSVLQRVSDSNDKENRMITKRNNSGFDGISRPSISIQSYLERI 60
           MGEKEGMVGIPKVINYLSSVLQRVSDSNDKENRMITKRNNSGFDGISRPSISIQSYLERI
Sbjct: 1   MGEKEGMVGIPKVINYLSSVLQRVSDSNDKENRMITKRNNSGFDGISRPSISIQSYLERI 60

Query: 61  FKYANCSPSCFVAAYVYLHRFLHNHHPSNLHIDSFNVHRLLITSVLVSAKFFDDLYYNNA 120
           FKYANCSPSCFVAAYVYLHRFLHNHHPSNLHIDSFNVHRLLITSVLVSAKFFDDLYYNNA
Sbjct: 61  FKYANCSPSCFVAAYVYLHRFLHNHHPSNLHIDSFNVHRLLITSVLVSAKFFDDLYYNNA 120

Query: 121 YYAKVGGISTMEMNHLELDFLFGLRFQLNVSPNTFHIYCSYLQSEMLSTTQPKLQIQTPI 180
           YYAKVGGISTMEMNHLELDFLFGLRFQLNVSPNTFHIYCSYLQSEMLSTTQPKLQIQTPI
Sbjct: 121 YYAKVGGISTMEMNHLELDFLFGLRFQLNVSPNTFHIYCSYLQSEMLSTTQPKLQIQTPI 180

Query: 181 EQLHSFPEDPEARLTV 197
           EQLHSFPEDPEARLTV
Sbjct: 181 EQLHSFPEDPEARLTV 196

[Close]

BLAST of CSPI04G04260 vs. TrEMBL
Match: V4LH68_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10001641mg PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 8.3e-56
Identity = 123/190 (64.74%), Postives = 143/190 (75.26%), Query Frame = 1


Query: 1   MGEKEGMVGIPKVINYLSSVLQRVSDSNDKENRMITKRNN-SGFDGISRPSISIQSYLER 60
           M E E    +PK+I +LSS+L+RV++SND+  R+ T+    S F G+SRP+I+IQSYLER
Sbjct: 1   MAELEKAGVMPKLIAFLSSLLERVAESNDRTRRVTTQSQRVSVFHGLSRPTITIQSYLER 60

Query: 61  IFKYANCSPSCFVAAYVYLHRFLHNHHPSNLHIDSFNVHRLLITSVLVSAKFFDDLYYNN 120
           IFKYANCSPSCFV AYVYL RF H   PS L I+SFNVHRLLITSV+VSAKF DDLYYNN
Sbjct: 61  IFKYANCSPSCFVVAYVYLDRFTHRQ-PS-LPINSFNVHRLLITSVMVSAKFLDDLYYNN 120

Query: 121 AYYAKVGGISTMEMNHLELDFLFGLRFQLNVSPNTFHIYCSYLQSEMLSTTQPKLQIQTP 180
           AYYAKVGGIST EMN LELDFLFGL F LNV+PNTFH Y SYLQ EM       L +  P
Sbjct: 121 AYYAKVGGISTKEMNLLELDFLFGLGFDLNVTPNTFHAYFSYLQKEMTLLQPLSLVVVAP 180

Query: 181 IEQLHSFPED 190
              + +F +D
Sbjct: 181 PRSVITFNDD 188

[Close]

BLAST of CSPI04G04260 vs. TrEMBL
Match: A0A067JI41_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26314 PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 1.9e-55
Identity = 120/180 (66.67%), Postives = 144/180 (80.00%), Query Frame = 1


Query: 1   MGEKEGMVGIPKVINYLSSVLQRVSDSNDKENRMITKRNNSGFDGISRPSISIQSYLERI 60
           M + E    +PKVI++LSS+LQRV++SND  +++  +R  S F G++RP+ISIQ+YLERI
Sbjct: 1   MADLEASEAMPKVISFLSSLLQRVAESNDLRSQLYPQRI-SVFHGLTRPNISIQTYLERI 60

Query: 61  FKYANCSPSCFVAAYVYLHRFLHNHHPSNLHIDSFNVHRLLITSVLVSAKFFDDLYYNNA 120
           FKYANCSPSCFV AYVYL RF     PS L I+SFNVHRLLITSVLVSAKF DD+YYNNA
Sbjct: 61  FKYANCSPSCFVVAYVYLDRFAQRQ-PS-LPINSFNVHRLLITSVLVSAKFMDDIYYNNA 120

Query: 121 YYAKVGGISTMEMNHLELDFLFGLRFQLNVSPNTFHIYCSYLQSEMLSTTQPKLQIQTPI 180
           YYAKVGGIST EMN LE+DFLFGL FQLNV+P TFH YCSYLQ EML  +  +L ++ P+
Sbjct: 121 YYAKVGGISTAEMNVLEVDFLFGLGFQLNVAPTTFHTYCSYLQREMLMQSPVQL-VEPPL 176

[Close]

BLAST of CSPI04G04260 vs. TrEMBL
Match: B9MV61_POPTR (Cyclin family protein OS=Populus trichocarpa GN=POPTR_0014s04930g PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 1.9e-55
Identity = 121/176 (68.75%), Postives = 138/176 (78.41%), Query Frame = 1


Query: 1   MGEKEGMVGIPKVINYLSSVLQRVSDSNDKENRMITKRNNSGFDGISRPSISIQSYLERI 60
           M E E    +PK I +LSS+LQRV+DSND  NR    +  S F G++RP+ISIQSYLERI
Sbjct: 1   MAELESTKMMPKSITFLSSLLQRVADSNDL-NREFQPQKISVFHGLTRPTISIQSYLERI 60

Query: 61  FKYANCSPSCFVAAYVYLHRFLHNHHPSNLHIDSFNVHRLLITSVLVSAKFFDDLYYNNA 120
           FKYANCSPSCFV AYVYL RF     PS L I+S NVHRLLITSVLVSAKF DD+YYNNA
Sbjct: 61  FKYANCSPSCFVVAYVYLDRFAQRQ-PS-LPINSLNVHRLLITSVLVSAKFMDDMYYNNA 120

Query: 121 YYAKVGGISTMEMNHLELDFLFGLRFQLNVSPNTFHIYCSYLQSEMLSTTQPKLQI 177
           YYA+VGGIST+EMN+LE+DFLFGL F LNV+PNTFH YCSYLQ EM+   QP L +
Sbjct: 121 YYARVGGISTIEMNYLEVDFLFGLGFNLNVTPNTFHTYCSYLQREMMQ--QPSLNL 171

[Close]

BLAST of CSPI04G04260 vs. TrEMBL
Match: A0A0D2RJK5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G213300 PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 1.9e-55
Identity = 118/183 (64.48%), Postives = 146/183 (79.78%), Query Frame = 1


Query: 1   MGEKEGMVGIPKVINYLSSVLQRVSDSNDKENRMITKRNNSGFDGISRPSISIQSYLERI 60
           + +K+    +PK+I +LSS+LQRV++SND   R+   +  S F G++RP+ISI+SYLERI
Sbjct: 10  INDKDDQETVPKIITFLSSLLQRVAESND-HCRLFQSQKISVFHGLTRPTISIKSYLERI 69

Query: 61  FKYANCSPSCFVAAYVYLHRFLHNHHPSNLHIDSFNVHRLLITSVLVSAKFFDDLYYNNA 120
           FKYANCSPSCFV AYVYL RF+    PS L I+S+NVHRLLITSVLVSAKF DD+YYNNA
Sbjct: 70  FKYANCSPSCFVVAYVYLDRFVQMQ-PS-LPINSYNVHRLLITSVLVSAKFMDDMYYNNA 129

Query: 121 YYAKVGGISTMEMNHLELDFLFGLRFQLNVSPNTFHIYCSYLQSEMLSTTQPKLQIQTPI 180
           YYAKVGGIST+EMN LE+DFLFGL FQLNV+P TFH YC++LQ EM       +QIQ+P+
Sbjct: 130 YYAKVGGISTVEMNLLEVDFLFGLGFQLNVAPTTFHTYCTFLQREMC------MQIQSPL 183

Query: 181 EQL 184
           +QL
Sbjct: 190 QQL 183

[Close]

BLAST of CSPI04G04260 vs. TAIR10
Match: AT2G44740.1 (AT2G44740.1 cyclin p4;1)

HSP 1 Score: 216.9 bits (551), Expect = 1.2e-56
Identity = 120/190 (63.16%), Postives = 141/190 (74.21%), Query Frame = 1


Query: 1   MGEKEGMVGIPKVINYLSSVLQRVSDSNDKENRMITKRNN-SGFDGISRPSISIQSYLER 60
           M E E    + K+I +LSS+L+RV++SND   R+ T+    S F G+SRP+I+IQSYLER
Sbjct: 1   MAELENPSVMSKLIAFLSSLLERVAESNDLTRRVATQSQRVSVFHGLSRPTITIQSYLER 60

Query: 61  IFKYANCSPSCFVAAYVYLHRFLHNHHPSNLHIDSFNVHRLLITSVLVSAKFFDDLYYNN 120
           IFKYANCSPSCFV AYVYL RF H   PS L I+SFNVHRLLITSV+V+AKF DDLYYNN
Sbjct: 61  IFKYANCSPSCFVVAYVYLDRFTHRQ-PS-LPINSFNVHRLLITSVMVAAKFLDDLYYNN 120

Query: 121 AYYAKVGGISTMEMNHLELDFLFGLRFQLNVSPNTFHIYCSYLQSEMLSTTQPKLQIQTP 180
           AYYAKVGGIST EMN LELDFLFGL F+LNV+PNTF+ Y SYLQ EM       L +   
Sbjct: 121 AYYAKVGGISTKEMNFLELDFLFGLGFELNVTPNTFNAYFSYLQKEMTLLQPLSLVVVPS 180

Query: 181 IEQLHSFPED 190
              L +F +D
Sbjct: 181 SRSLITFNDD 188

[Close]

BLAST of CSPI04G04260 vs. TAIR10
Match: AT5G07450.1 (AT5G07450.1 cyclin p4;3)

HSP 1 Score: 186.8 bits (473), Expect = 1.3e-47
Identity = 98/162 (60.49%), Postives = 125/162 (77.16%), Query Frame = 1


Query: 10  IPKVINYLSSVLQRVSDSNDKENRMITKRNN-SGFDGISRPSISIQSYLERIFKYANCSP 69
           +P VI  +SS+LQRVS++ND  +R   +    S F+ +++PSISI+SY+ERIFKYA+CS 
Sbjct: 20  MPNVITAMSSLLQRVSETNDDLSRPFREHKRISAFNAVTKPSISIRSYMERIFKYADCSD 79

Query: 70  SCFVAAYVYLHRFLHNHHPSNLHIDSFNVHRLLITSVLVSAKFFDDLYYNNAYYAKVGGI 129
           SC++ AY+YL RF+       L IDS NVHRL+ITSVLVSAKF DDL YNNA+YAKVGGI
Sbjct: 80  SCYIVAYIYLDRFIQKQ--PLLPIDSSNVHRLIITSVLVSAKFMDDLCYNNAFYAKVGGI 139

Query: 130 STMEMNHLELDFLFGLRFQLNVSPNTFHIYCSYLQSEMLSTT 171
           +T EMN LELDFLFG+ FQLNV+ +T++ YCS LQ EM+  T
Sbjct: 140 TTEEMNLLELDFLFGIGFQLNVTISTYNDYCSSLQREMVMRT 179

[Close]

BLAST of CSPI04G04260 vs. TAIR10
Match: AT5G61650.1 (AT5G61650.1 CYCLIN P4;2)

HSP 1 Score: 184.1 bits (466), Expect = 8.3e-47
Identity = 96/157 (61.15%), Postives = 122/157 (77.71%), Query Frame = 1


Query: 10  IPKVINYLSSVLQRVSDSNDKENRMITKRNNSGFDGISRPSISIQSYLERIFKYANCSPS 69
           +P V+  +S +LQRVS++ND  ++   K+  S F G+++PSISI+SYLERIF+YANCS S
Sbjct: 22  MPSVLTAMSYLLQRVSETNDNLSQ---KQKPSSFTGVTKPSISIRSYLERIFEYANCSYS 81

Query: 70  CFVAAYVYLHRFLHNHHPSNLHIDSFNVHRLLITSVLVSAKFFDDLYYNNAYYAKVGGIS 129
           C++ AY+YL RF+       L I+SFNVHRL+ITSVLVSAKF DDL YNN YYAKVGGIS
Sbjct: 82  CYIVAYIYLDRFVKKQ--PFLPINSFNVHRLIITSVLVSAKFMDDLSYNNEYYAKVGGIS 141

Query: 130 TMEMNHLELDFLFGLRFQLNVSPNTFHIYCSYLQSEM 167
             EMN LELDFLFG+ F+LNV+ +TF+ YC +LQ EM
Sbjct: 142 REEMNMLELDFLFGIGFELNVTVSTFNNYCCFLQREM 173

[Close]

BLAST of CSPI04G04260 vs. TAIR10
Match: AT3G63120.1 (AT3G63120.1 cyclin p1;1)

HSP 1 Score: 148.7 bits (374), Expect = 3.8e-36
Identity = 79/173 (45.66%), Postives = 115/173 (66.47%), Query Frame = 1


Query: 11  PKVINYLSSVLQRVSDSNDKENRMITKRNN-SGFDGISRPSISIQSYLERIFKYANCSPS 70
           P V++ LSS L+R    N  +  ++   ++ + FDG S P ISI  YL+RIFKY+ CSPS
Sbjct: 32  PTVLSRLSSSLERSLLLNHDDKILLGSPDSVTVFDGRSPPEISIAHYLDRIFKYSCCSPS 91

Query: 71  CFVAAYVYLHRFLHNHHPSNLHIDSFNVHRLLITSVLVSAKFFDDLYYNNAYYAKVGGIS 130
           CFV A++Y+  FLH    +   +   NVHRL+IT+V+++AK FDD Y+NNAYYA+VGG++
Sbjct: 92  CFVIAHIYIDHFLHK---TRALLKPLNVHRLIITTVMLAAKVFDDRYFNNAYYARVGGVT 151

Query: 131 TMEMNHLELDFLFGLRFQLNVSPNTFHIYCSYLQSEMLSTTQPKLQIQTPIEQ 183
           T E+N LE++ LF L F+L V P TFH +C  L+ +     +   QI+ PI++
Sbjct: 152 TRELNRLEMELLFTLDFKLQVDPQTFHTHCCQLEKQ----NRDGFQIEWPIKE 197

[Close]

BLAST of CSPI04G04260 vs. TAIR10
Match: AT3G21870.1 (AT3G21870.1 cyclin p2;1)

HSP 1 Score: 142.1 bits (357), Expect = 3.6e-34
Identity = 78/186 (41.94%), Postives = 114/186 (61.29%), Query Frame = 1


Query: 11  PKVINYLSSVLQRVSDSND---KENRMITKRNNSGFDGISRPSISIQSYLERIFKYANCS 70
           P+V+  +S V++++   N+   K+ +   K +   F G+  PSISI  YLERI+KY  CS
Sbjct: 25  PRVLTIISHVMEKLVARNEWLAKQTKGFGK-SLEAFHGVRAPSISIAKYLERIYKYTKCS 84

Query: 71  PSCFVAAYVYLHRFLHNHHPSNLHIDSFNVHRLLITSVLVSAKFFDDLYYNNAYYAKVGG 130
           P+CFV  YVY+ R  H H P +L + S NVHRLL+T V+++AK  DD++YNN +YA+VGG
Sbjct: 85  PACFVVGYVYIDRLAHKH-PGSLVV-SLNVHRLLVTCVMIAAKILDDVHYNNEFYARVGG 144

Query: 131 ISTMEMNHLELDFLFGLRFQLNVSPNTFHIYCSYLQSEM--------LSTTQPKLQIQTP 186
           +S  ++N +EL+ LF L F++ VS   F  YC +L+ EM        L   QP  +  +P
Sbjct: 145 VSNADLNKMELELLFLLDFRVTVSFRVFESYCFHLEKEMQLNDAVSSLKDIQPMQESLSP 204

[Close]

BLAST of CSPI04G04260 vs. NCBI nr
Match: gi|449458397|ref|XP_004146934.1| (PREDICTED: cyclin-U4-1-like [Cucumis sativus])

HSP 1 Score: 396.4 bits (1017), Expect = 3.0e-107
Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 1


Query: 1   MGEKEGMVGIPKVINYLSSVLQRVSDSNDKENRMITKRNNSGFDGISRPSISIQSYLERI 60
           MGEKEGMVGIPKVINYLSSVLQRVSDSNDKENRMITKRNNSGFDGISRPSISIQSYLERI
Sbjct: 1   MGEKEGMVGIPKVINYLSSVLQRVSDSNDKENRMITKRNNSGFDGISRPSISIQSYLERI 60

Query: 61  FKYANCSPSCFVAAYVYLHRFLHNHHPSNLHIDSFNVHRLLITSVLVSAKFFDDLYYNNA 120
           FKYANCSPSCFVAAYVYLHRFLHNHHPSNLHIDSFNVHRLLITSVLVSAKFFDDLYYNNA
Sbjct: 61  FKYANCSPSCFVAAYVYLHRFLHNHHPSNLHIDSFNVHRLLITSVLVSAKFFDDLYYNNA 120

Query: 121 YYAKVGGISTMEMNHLELDFLFGLRFQLNVSPNTFHIYCSYLQSEMLSTTQPKLQIQTPI 180
           YYAKVGGISTMEMNHLELDFLFGLRFQLNVSPNTFHIYCSYLQSEMLSTTQPKLQIQTPI
Sbjct: 121 YYAKVGGISTMEMNHLELDFLFGLRFQLNVSPNTFHIYCSYLQSEMLSTTQPKLQIQTPI 180

Query: 181 EQLHSFPEDPEARLTV 197
           EQLHSFPEDPEARLTV
Sbjct: 181 EQLHSFPEDPEARLTV 196

[Close]

BLAST of CSPI04G04260 vs. NCBI nr
Match: gi|659107765|ref|XP_008453846.1| (PREDICTED: cyclin-U4-1-like [Cucumis melo])

HSP 1 Score: 351.3 bits (900), Expect = 1.1e-93
Identity = 179/198 (90.40%), Postives = 186/198 (93.94%), Query Frame = 1


Query: 1   MGEKEGMVGIPKVINYLSSVLQRVSDSNDKENRMI---TKRNN-SGFDGISRPSISIQSY 60
           +GEKE MVGIPKVINYLSSVLQRVS+SND+E+RM+   TKRNN SGFDGISRPSISIQSY
Sbjct: 4   VGEKEEMVGIPKVINYLSSVLQRVSESNDQEDRMMNNGTKRNNYSGFDGISRPSISIQSY 63

Query: 61  LERIFKYANCSPSCFVAAYVYLHRFLHNHHPSNLHIDSFNVHRLLITSVLVSAKFFDDLY 120
           LERIFKYANCSPSCFV AYVYLHRFLHNHHPSN HIDSFNVHRLLITSVLVSAKFFDDLY
Sbjct: 64  LERIFKYANCSPSCFVVAYVYLHRFLHNHHPSNFHIDSFNVHRLLITSVLVSAKFFDDLY 123

Query: 121 YNNAYYAKVGGISTMEMNHLELDFLFGLRFQLNVSPNTFHIYCSYLQSEMLSTTQPKLQI 180
           YNNAYYAKVGGISTMEMN LELDFLFGLRFQLNVSPNTFHIYCSYLQSEML TTQPKLQI
Sbjct: 124 YNNAYYAKVGGISTMEMNLLELDFLFGLRFQLNVSPNTFHIYCSYLQSEMLLTTQPKLQI 183

Query: 181 QTPIEQLHSFPEDPEARL 195
           QTPI+QLHSF ED +A L
Sbjct: 184 QTPIKQLHSFTEDQDASL 201

[Close]

BLAST of CSPI04G04260 vs. NCBI nr
Match: gi|567165837|ref|XP_006397655.1| (hypothetical protein EUTSA_v10001641mg [Eutrema salsugineum])

HSP 1 Score: 224.9 bits (572), Expect = 1.2e-55
Identity = 123/190 (64.74%), Postives = 143/190 (75.26%), Query Frame = 1


Query: 1   MGEKEGMVGIPKVINYLSSVLQRVSDSNDKENRMITKRNN-SGFDGISRPSISIQSYLER 60
           M E E    +PK+I +LSS+L+RV++SND+  R+ T+    S F G+SRP+I+IQSYLER
Sbjct: 1   MAELEKAGVMPKLIAFLSSLLERVAESNDRTRRVTTQSQRVSVFHGLSRPTITIQSYLER 60

Query: 61  IFKYANCSPSCFVAAYVYLHRFLHNHHPSNLHIDSFNVHRLLITSVLVSAKFFDDLYYNN 120
           IFKYANCSPSCFV AYVYL RF H   PS L I+SFNVHRLLITSV+VSAKF DDLYYNN
Sbjct: 61  IFKYANCSPSCFVVAYVYLDRFTHRQ-PS-LPINSFNVHRLLITSVMVSAKFLDDLYYNN 120

Query: 121 AYYAKVGGISTMEMNHLELDFLFGLRFQLNVSPNTFHIYCSYLQSEMLSTTQPKLQIQTP 180
           AYYAKVGGIST EMN LELDFLFGL F LNV+PNTFH Y SYLQ EM       L +  P
Sbjct: 121 AYYAKVGGISTKEMNLLELDFLFGLGFDLNVTPNTFHAYFSYLQKEMTLLQPLSLVVVAP 180

Query: 181 IEQLHSFPED 190
              + +F +D
Sbjct: 181 PRSVITFNDD 188

[Close]

BLAST of CSPI04G04260 vs. NCBI nr
Match: gi|802770022|ref|XP_012090519.1| (PREDICTED: cyclin-U4-1 [Jatropha curcas])

HSP 1 Score: 223.8 bits (569), Expect = 2.7e-55
Identity = 120/180 (66.67%), Postives = 144/180 (80.00%), Query Frame = 1


Query: 1   MGEKEGMVGIPKVINYLSSVLQRVSDSNDKENRMITKRNNSGFDGISRPSISIQSYLERI 60
           M + E    +PKVI++LSS+LQRV++SND  +++  +R  S F G++RP+ISIQ+YLERI
Sbjct: 1   MADLEASEAMPKVISFLSSLLQRVAESNDLRSQLYPQRI-SVFHGLTRPNISIQTYLERI 60

Query: 61  FKYANCSPSCFVAAYVYLHRFLHNHHPSNLHIDSFNVHRLLITSVLVSAKFFDDLYYNNA 120
           FKYANCSPSCFV AYVYL RF     PS L I+SFNVHRLLITSVLVSAKF DD+YYNNA
Sbjct: 61  FKYANCSPSCFVVAYVYLDRFAQRQ-PS-LPINSFNVHRLLITSVLVSAKFMDDIYYNNA 120

Query: 121 YYAKVGGISTMEMNHLELDFLFGLRFQLNVSPNTFHIYCSYLQSEMLSTTQPKLQIQTPI 180
           YYAKVGGIST EMN LE+DFLFGL FQLNV+P TFH YCSYLQ EML  +  +L ++ P+
Sbjct: 121 YYAKVGGISTAEMNVLEVDFLFGLGFQLNVAPTTFHTYCSYLQREMLMQSPVQL-VEPPL 176

[Close]

BLAST of CSPI04G04260 vs. NCBI nr
Match: gi|566202605|ref|XP_006375171.1| (cyclin family protein [Populus trichocarpa])

HSP 1 Score: 223.8 bits (569), Expect = 2.7e-55
Identity = 121/176 (68.75%), Postives = 138/176 (78.41%), Query Frame = 1


Query: 1   MGEKEGMVGIPKVINYLSSVLQRVSDSNDKENRMITKRNNSGFDGISRPSISIQSYLERI 60
           M E E    +PK I +LSS+LQRV+DSND  NR    +  S F G++RP+ISIQSYLERI
Sbjct: 1   MAELESTKMMPKSITFLSSLLQRVADSNDL-NREFQPQKISVFHGLTRPTISIQSYLERI 60

Query: 61  FKYANCSPSCFVAAYVYLHRFLHNHHPSNLHIDSFNVHRLLITSVLVSAKFFDDLYYNNA 120
           FKYANCSPSCFV AYVYL RF     PS L I+S NVHRLLITSVLVSAKF DD+YYNNA
Sbjct: 61  FKYANCSPSCFVVAYVYLDRFAQRQ-PS-LPINSLNVHRLLITSVLVSAKFMDDMYYNNA 120

Query: 121 YYAKVGGISTMEMNHLELDFLFGLRFQLNVSPNTFHIYCSYLQSEMLSTTQPKLQI 177
           YYA+VGGIST+EMN+LE+DFLFGL F LNV+PNTFH YCSYLQ EM+   QP L +
Sbjct: 121 YYARVGGISTIEMNYLEVDFLFGLGFNLNVTPNTFHTYCSYLQREMMQ--QPSLNL 171

The following BLAST results are available for this feature:

BLAST of CSPI04G04260 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CCU41_ARATH	2.0e-55	63.16	Cyclin-U4-1 OS=Arabidopsis thaliana GN=CYCU4-1 PE=1 SV=1	[more]
CCU42_ARATH	2.3e-46	60.49	Cyclin-U4-2 OS=Arabidopsis thaliana GN=CYCU4-2 PE=1 SV=1	[more]
CCP41_ORYSJ	3.0e-46	53.23	Cyclin-P4-1 OS=Oryza sativa subsp. japonica GN=CYCP4-1 PE=2 SV=1	[more]
CCU43_ARATH	1.5e-45	61.15	Cyclin-U4-3 OS=Arabidopsis thaliana GN=CYCU4-3 PE=1 SV=1	[more]
CCP31_ORYSJ	1.1e-35	47.25	Cyclin-P3-1 OS=Oryza sativa subsp. japonica GN=CYCP3-1 PE=3 SV=1	[more]

BLAST of CSPI04G04260 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZ83_CUCSA	2.1e-107	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G025110 PE=4 SV=1	[more]
V4LH68_EUTSA	8.3e-56	64.74	Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10001641mg PE=4 SV=1	[more]
A0A067JI41_JATCU	1.9e-55	66.67	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26314 PE=4 SV=1	[more]
B9MV61_POPTR	1.9e-55	68.75	Cyclin family protein OS=Populus trichocarpa GN=POPTR_0014s04930g PE=4 SV=1	[more]
A0A0D2RJK5_GOSRA	1.9e-55	64.48	Uncharacterized protein OS=Gossypium raimondii GN=B456_008G213300 PE=4 SV=1	[more]

BLAST of CSPI04G04260 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G44740.1	1.2e-56	63.16	cyclin p4;1	[more]
AT5G07450.1	1.3e-47	60.49	cyclin p4;3	[more]
AT5G61650.1	8.3e-47	61.15	CYCLIN P4;2	[more]
AT3G63120.1	3.8e-36	45.66	cyclin p1;1	[more]
AT3G21870.1	3.6e-34	41.94	cyclin p2;1	[more]

BLAST of CSPI04G04260 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449458397\|ref\|XP_004146934.1\|	3.0e-107	100.00	PREDICTED: cyclin-U4-1-like [Cucumis sativus]	[more]
gi\|659107765\|ref\|XP_008453846.1\|	1.1e-93	90.40	PREDICTED: cyclin-U4-1-like [Cucumis melo]	[more]
gi\|567165837\|ref\|XP_006397655.1\|	1.2e-55	64.74	hypothetical protein EUTSA_v10001641mg [Eutrema salsugineum]	[more]
gi\|802770022\|ref\|XP_012090519.1\|	2.7e-55	66.67	PREDICTED: cyclin-U4-1 [Jatropha curcas]	[more]
gi\|566202605\|ref\|XP_006375171.1\|	2.7e-55	68.75	cyclin family protein [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR012389	Cyclin_P/U
IPR013763	Cyclin-like
IPR013922	Cyclin_PHO80-like

Vocabulary: **Biological Process**
Term	Definition
GO:0000079	regulation of cyclin-dependent protein serine/threonine kinase activity

Vocabulary: **Molecular Function**
Term	Definition
GO:0019901	protein kinase binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000079	regulation of cyclin-dependent protein serine/threonine kinase activity
biological_process	GO:0010440	stomatal lineage progression
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0019901	protein kinase binding
molecular_function	GO:0016301	kinase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G04260.1	CSPI04G04260.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012389	Cyclin P/U	PIR	PIRSF027110	PREG	coord: 3..191 score: 1.9
IPR013763	Cyclin-like	GENE3D	G3DSA:1.10.472.10		coord: 62..149 score: 7.
IPR013763	Cyclin-like	unknown	SSF47954	Cyclin-like	coord: 55..149 score: 9.08
IPR013922	Cyclin PHO80-like	PFAM	PF08613	Cyclin	coord: 22..148 score: 3.0
None	No IPR available	PANTHER	PTHR15615	UNCHARACTERIZED	coord: 10..167 score: 2.1
None	No IPR available	PANTHER	PTHR15615:SF28	CYCLIN-U4-1	coord: 10..167 score: 2.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI04G04260	Csa4G025110	Cucumber (Chinese Long) v2	cpicuB182
CSPI04G04260	MELO3C017631	Melon (DHL92) v3.5.1	cpimeB310
CSPI04G04260	ClCG07G017150	Watermelon (Charleston Gray)	cpiwcgB336
CSPI04G04260	Lsi07G001330	Bottle gourd (USVL1VR-Ls)	cpilsiB303
CSPI04G04260	MELO3C017631.2	Melon (DHL92) v3.6.1	cpimedB301
CSPI04G04260	CsaV3_4G004350	Cucumber (Chinese Long) v3	cpicucB213
CSPI04G04260	Cla97C07G144170	Watermelon (97103) v2	cpiwmbB326
CSPI04G04260	Bhi01G001991	Wax gourd	cpiwgoB378
CSPI04G04260	Cucsa.093970	Cucumber (Gy14) v1	cgycpiB103
CSPI04G04260	CmaCh04G003710	Cucurbita maxima (Rimu)	cmacpiB716
CSPI04G04260	CmoCh04G003910	Cucurbita moschata (Rifu)	cmocpiB708
CSPI04G04260	Cp4.1LG01g03450	Cucurbita pepo (Zucchini)	cpecpiB398
CSPI04G04260	CsGy4G004180	Cucumber (Gy14) v2	cgybcpiB168
CSPI04G04260	Carg08045	Silver-seed gourd	carcpiB0408

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI04G04260	Bottle gourd (USVL1VR-Ls)	cpilsiB243
CSPI04G04260	Cucumber (Gy14) v2	cgybcpiB222
CSPI04G04260	Silver-seed gourd	carcpiB0746
CSPI04G04260	Silver-seed gourd	carcpiB0906
CSPI04G04260	Cucumber (Chinese Long) v3	cpicucB234
CSPI04G04260	Watermelon (97103) v2	cpiwmbB274
CSPI04G04260	Wild cucumber (PI 183967)	cpicpiB156
CSPI04G04260	Cucurbita maxima (Rimu)	cmacpiB337
CSPI04G04260	Cucurbita moschata (Rifu)	cmocpiB328
CSPI04G04260	Cucurbita moschata (Rifu)	cmocpiB604
CSPI04G04260	Cucumber (Chinese Long) v2	cpicuB194
CSPI04G04260	Watermelon (Charleston Gray)	cpiwcgB298
CSPI04G04260	Watermelon (97103) v1	cpiwmB315
CSPI04G04260	Cucurbita pepo (Zucchini)	cpecpiB220
CSPI04G04260	Cucurbita pepo (Zucchini)	cpecpiB731