Csa3G236050 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa3G236050
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein; contains IPR021434 (Protein of unknown function DUF3082)
Location	Chr3 : 15218152 .. 15220114 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTTATTGCAAGTCACTGGAAATAGTTGGGTTGAAAATTAGATGCCGTTGTCGTATGGTGATTCAAGAAGGTCAGATTTAGTTGGTATAAATTGTTAGGTTAATACTACAAACCTAAGAGTTGGTGTCTAGTGATCGTTTAATGTGGAATCAGATTATGGAGTTATAAATTTGAATCTCAAAACTGTCATTTTCTTTCAGATGGATATTAAATAGTTTGTGTGGATTTCGTGAGTCAAATTAATAATTGTGCTCTTGCATATAGAGAATTTGATGAATATTAACAAATTACCAAATGTATTCTAACTAATTAACTTAAATTTTAGGTCTTGTGCTAGTTTAACCTTAATAGTTTATGGTTATGTTCAACAAGATGTTTAACCTTAACTTCTGGAGGAAGTTGAATTACTAGAAAGTTGGCTTAAGCTTTTTTAGTGGCCAATCCGATTTATTTATTTATTTATCATTATCATTATTATTTTGTATTACTGGAAGATCTTTGAATGTTATATACTTATATTTATATACTGAAATCATAATGTTTTGGCTATAAGGTTGGGAGGGGAGGGTGGATTGGAGAATGTTTGAATGGAGCTATCTTTAGATTTTGGGGCATGGGACAATCTAGTAGAACGCTTTGCATCCTCGTCTTCTTAGCATTCACTTTTTAGTTATTTCTTTTTTACAATAATTCCAATGTAATAAACATTTCGTAGCCTTTTTTTCCTTTTATGAACGGATTATCTTCTCACAATTTCTTTGCAATGTGTTTTGCATTGCAACCTTTTCCCTGTGCAACGTAAAGTGTTTCAGATTTTTTTTTCCATTCCTGTCCTTTCATTGCTTTGTTTAACTTGTTTTTTTTATTTGGTGGAAGTCAAATTCCCTTTCAAAACGTGTTGTGTGTGTGTGTAGTGAACATTTTACTCAATCTCATTCCATATCAGTCCTACAAATGCAAAGTACAATTTCTCTTATCTGGACTTTTTTCTGGATCTGAAGTGATTCTGAACTTTCAGATTTATTGAGTGGATATCTTTTGTTACTATAAAACATTGGAACTTTTTTTTTACTTCATGTGCCCATTTTAGAAATTTAGGTCTGGTGGAGTAAAAAAGTCTCTGAAGGAGGAAGCAATGGACAGTTTGAAAGCAATTAGTACAGGTCCAATTGAATCGAAGTCAACACCTTCACCTATACAAGCATTCTTGGGAGCAATAGCAGCTGGTGTTATTGCACTAATCTTATATAAATTCACCACTACCATTGAAGCTTCTCTGAACAGACAGACGGTGTCTGATAACTTCTCGGTATGCTCTCGTATTTACTTCATGTTTCAACTATTTCTTTGGGCGAACTATGGGAGGATTTCTCATTCACGTCATCCAAGATAATGACTTGAGCTAGCCAATGTTGGACATATGCTCTGTGTTTTTCCCTCAGAGAACTATTTGATTAATTTCTGTACATTGCATTAACAAATGGATAATGATACGTGTCTGACAATGAAATTAACCACGCAAAAAAATTAAACTTTTGTGAATTGATGTTCTCCTGGGGCTTGCCTCATATAATCTAAGAATGCCATTTAACAATTGGTTTCCATCTTTTTTAGGTTCGACAACTGACAATAACGATAAGGTAACTTCCTCAACTTACTCTAACTCCGTTTGCAGTTAGATAAAAGACTAGTGATCAATTTCGTATCTCTTACATGCAGAACTATCGTGAACGGACTATGCTACCTTGCAACATTTGTTTTCGGAATTAATGCAATTGGTTTATTCCTTTACTCTGGTCAGTTGGCCATGAATTCTGTTATGGAAGAAGGTTCCAAAGACACAGAACCTAAAGCTAAAAGTGATGAGCAAGTTAGCCCGCCAACTTCAACAGCTGAAACGACCCTCGATAGCACCGAATCAAGCAACAGCAAGGATGATCAAAGTTCAAGTAATTTGTAG

mRNA sequence

ATGCCTTATTGCAAGTCACTGGAAATAGTTGGGTTGAAAATTAGATGCCGTTGTCGTATGGTGATTCAAGAAGTGAACATTTTACTCAATCTCATTCCATATCAGTCCTACAAATGCAAAGTACAATTTCTCTTATCTGGACTTTTTTCTGGATCTGAAAAATTTAGGTCTGGTGGAGTAAAAAAGTCTCTGAAGGAGGAAGCAATGGACAGTTTGAAAGCAATTAGTACAGGTCCAATTGAATCGAAGTCAACACCTTCACCTATACAAGCATTCTTGGGAGCAATAGCAGCTGGTGTTATTGCACTAATCTTATATAAATTCACCACTACCATTGAAGCTTCTCTGAACAGACAGACGGTGTCTGATAACTTCTCGGTTCGACAACTGACAATAACGATAAGAACTATCGTGAACGGACTATGCTACCTTGCAACATTTGTTTTCGGAATTAATGCAATTGGTTTATTCCTTTACTCTGGTCAGTTGGCCATGAATTCTGTTATGGAAGAAGGTTCCAAAGACACAGAACCTAAAGCTAAAAGTGATGAGCAAGTTAGCCCGCCAACTTCAACAGCTGAAACGACCCTCGATAGCACCGAATCAAGCAACAGCAAGGATGATCAAAGTTCAAGTAATTTGTAG

Coding sequence (CDS)

ATGCCTTATTGCAAGTCACTGGAAATAGTTGGGTTGAAAATTAGATGCCGTTGTCGTATGGTGATTCAAGAAGTGAACATTTTACTCAATCTCATTCCATATCAGTCCTACAAATGCAAAGTACAATTTCTCTTATCTGGACTTTTTTCTGGATCTGAAAAATTTAGGTCTGGTGGAGTAAAAAAGTCTCTGAAGGAGGAAGCAATGGACAGTTTGAAAGCAATTAGTACAGGTCCAATTGAATCGAAGTCAACACCTTCACCTATACAAGCATTCTTGGGAGCAATAGCAGCTGGTGTTATTGCACTAATCTTATATAAATTCACCACTACCATTGAAGCTTCTCTGAACAGACAGACGGTGTCTGATAACTTCTCGGTTCGACAACTGACAATAACGATAAGAACTATCGTGAACGGACTATGCTACCTTGCAACATTTGTTTTCGGAATTAATGCAATTGGTTTATTCCTTTACTCTGGTCAGTTGGCCATGAATTCTGTTATGGAAGAAGGTTCCAAAGACACAGAACCTAAAGCTAAAAGTGATGAGCAAGTTAGCCCGCCAACTTCAACAGCTGAAACGACCCTCGATAGCACCGAATCAAGCAACAGCAAGGATGATCAAAGTTCAAGTAATTTGTAG

Protein sequence

MPYCKSLEIVGLKIRCRCRMVIQEVNILLNLIPYQSYKCKVQFLLSGLFSGSEKFRSGGVKKSLKEEAMDSLKAISTGPIESKSTPSPIQAFLGAIAAGVIALILYKFTTTIEASLNRQTVSDNFSVRQLTITIRTIVNGLCYLATFVFGINAIGLFLYSGQLAMNSVMEEGSKDTEPKAKSDEQVSPPTSTAETTLDSTESSNSKDDQSSSNL*

Homology

[Close]

BLAST of Csa3G236050 vs. TrEMBL
Match: A0A0A0LAG2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G236050 PE=4 SV=1)

HSP 1 Score: 414.5 bits (1064), Expect = 8.1e-113
Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 1


Query: 1   MPYCKSLEIVGLKIRCRCRMVIQEVNILLNLIPYQSYKCKVQFLLSGLFSGSEKFRSGGV 60
           MPYCKSLEIVGLKIRCRCRMVIQEVNILLNLIPYQSYKCKVQFLLSGLFSGSEKFRSGGV
Sbjct: 1   MPYCKSLEIVGLKIRCRCRMVIQEVNILLNLIPYQSYKCKVQFLLSGLFSGSEKFRSGGV 60

Query: 61  KKSLKEEAMDSLKAISTGPIESKSTPSPIQAFLGAIAAGVIALILYKFTTTIEASLNRQT 120
           KKSLKEEAMDSLKAISTGPIESKSTPSPIQAFLGAIAAGVIALILYKFTTTIEASLNRQT
Sbjct: 61  KKSLKEEAMDSLKAISTGPIESKSTPSPIQAFLGAIAAGVIALILYKFTTTIEASLNRQT 120

Query: 121 VSDNFSVRQLTITIRTIVNGLCYLATFVFGINAIGLFLYSGQLAMNSVMEEGSKDTEPKA 180
           VSDNFSVRQLTITIRTIVNGLCYLATFVFGINAIGLFLYSGQLAMNSVMEEGSKDTEPKA
Sbjct: 121 VSDNFSVRQLTITIRTIVNGLCYLATFVFGINAIGLFLYSGQLAMNSVMEEGSKDTEPKA 180

Query: 181 KSDEQVSPPTSTAETTLDSTESSNSKDDQSSSNL 215
           KSDEQVSPPTSTAETTLDSTESSNSKDDQSSSNL
Sbjct: 181 KSDEQVSPPTSTAETTLDSTESSNSKDDQSSSNL 214

[Close]

BLAST of Csa3G236050 vs. TrEMBL
Match: B9SB97_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0649730 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 2.3e-51
Identity = 104/160 (65.00%), Postives = 132/160 (82.50%), Query Frame = 1


Query: 54  KFRSGGVKKSLKEEAMDSLKAISTGPIESKSTPSPIQAFLGAIAAGVIALILYKFTTTIE 113
           KFRS G KK++KEEA+DSLKA+ +  I+++  PSP+Q FLG ++A VIALILYKFTTTIE
Sbjct: 125 KFRSSGAKKTMKEEALDSLKAMGSASIDAQKPPSPLQTFLGGVSAAVIALILYKFTTTIE 184

Query: 114 ASLNRQTVSDNFSVRQLTITIRTIVNGLCYLATFVFGINAIGLFLYSGQLAMNSVMEEGS 173
           A+LNRQTVSDNFSVRQ+TIT+RTI+NGLCYLATFVFG+N++GLFLYSGQLA+NS M EGS
Sbjct: 185 AALNRQTVSDNFSVRQITITVRTIINGLCYLATFVFGLNSVGLFLYSGQLAINSFM-EGS 244

Query: 174 KDTEPKAKSDEQVSPPTSTAETTLDSTESSNSKDDQSSSN 214
              E ++K +EQ     S  E+ +DSTES++S+ DQ+  N
Sbjct: 245 TSEESESKGNEQSGSLNSAPESPIDSTESNSSQGDQNPDN 283

[Close]

BLAST of Csa3G236050 vs. TrEMBL
Match: A0A067LBT5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15296 PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 5.2e-51
Identity = 103/160 (64.38%), Postives = 134/160 (83.75%), Query Frame = 1


Query: 54  KFRSGGVKKSLKEEAMDSLKAISTGPIESKSTPSPIQAFLGAIAAGVIALILYKFTTTIE 113
           KFRS GVKKS+KEEA+DSLKA+ +  I++   PSP+Q  LG I+AGVIALILYKFTTTIE
Sbjct: 131 KFRSSGVKKSIKEEALDSLKAMGSVSIDAGKPPSPVQTLLGGISAGVIALILYKFTTTIE 190

Query: 114 ASLNRQTVSDNFSVRQLTITIRTIVNGLCYLATFVFGINAIGLFLYSGQLAMNSVMEEGS 173
           A+LNRQT+SD++SVRQ+TITIRTI+NGLCYLATFVFG+N++GLFLYSGQLA+NS ME+ S
Sbjct: 191 AALNRQTISDSYSVRQITITIRTIINGLCYLATFVFGLNSVGLFLYSGQLAINSFMEDSS 250

Query: 174 KDTEPKAKSDEQVSPPTSTAETTLDSTESSNSKDDQSSSN 214
            ++E  +K +EQ SPP ST+E+   S +  +++ DQ++ N
Sbjct: 251 SESE--SKGNEQSSPPNSTSESAAASADLKSNQADQNTDN 288

[Close]

BLAST of Csa3G236050 vs. TrEMBL
Match: W9R7B4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_012166 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 1.5e-50
Identity = 107/158 (67.72%), Postives = 130/158 (82.28%), Query Frame = 1


Query: 54  KFRSGGVKKSLKEEAMDSLKAISTGPIESKSTPSPIQAFLGAIAAGVIALILYKFTTTIE 113
           KFRS GVKKSLKEEA+D+LKA+ +  IESK  PSP+QA LGAI+AGVIA+ILYKFTTTIE
Sbjct: 122 KFRSSGVKKSLKEEALDNLKAMGSASIESKGPPSPVQALLGAISAGVIAVILYKFTTTIE 181

Query: 114 ASLNRQTVSDNFSVRQLTITIRTIVNGLCYLATFVFGINAIGLFLYSGQLAMNSVMEEGS 173
           A+LN+QT+SD++S RQ+TIT+RTIVNGLCYLATF+FGIN+IGLFLY+GQLA+NS M EGS
Sbjct: 182 AALNQQTISDSYSARQITITVRTIVNGLCYLATFIFGINSIGLFLYAGQLAINSFM-EGS 241

Query: 174 KDTEPKAKSDEQVSPPTSTAETTL---DSTESSNSKDD 209
            D E ++K  EQ+S   ST E      DS+E + S DD
Sbjct: 242 TDEETESKGGEQLSSTNSTVENPTSAGDSSEDNQSSDD 278

[Close]

BLAST of Csa3G236050 vs. TrEMBL
Match: B9I1E4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s10000g PE=4 SV=2)

HSP 1 Score: 207.6 bits (527), Expect = 1.5e-50
Identity = 105/161 (65.22%), Postives = 129/161 (80.12%), Query Frame = 1


Query: 54  KFRSGGVKKSLKEEAMDSLKAISTGPIESKSTPSPIQAFLGAIAAGVIALILYKFTTTIE 113
           KFRS G KK+LKEEA+DSLK   + PI+ K  PSP+QAFLGAI+AGVIALILYKF+TTIE
Sbjct: 125 KFRSSGAKKTLKEEALDSLKTFGSAPIDVKKPPSPVQAFLGAISAGVIALILYKFSTTIE 184

Query: 114 ASLNRQTVSDNFSVRQLTITIRTIVNGLCYLATFVFGINAIGLFLYSGQLAMNSVMEEGS 173
           ASLNRQTVSDNFSVRQ+TIT+RTIVNGLCYLATFVFGIN++GLFLYS QLA NS+ME G+
Sbjct: 185 ASLNRQTVSDNFSVRQITITVRTIVNGLCYLATFVFGINSVGLFLYSAQLAFNSLMEAGT 244

Query: 174 KDTEPKAKSDEQVSPPTSTAETTLDSTESSNSKDDQSSSNL 215
            D   ++ +  Q     ST+++  D  E ++S+ DQ+  N+
Sbjct: 245 -DEVTESTTSGQSGSSNSTSDSATDGAELTSSQGDQNPDNI 284

[Close]

BLAST of Csa3G236050 vs. TAIR10
Match: AT3G15110.1 (AT3G15110.1 unknown protein)

HSP 1 Score: 183.0 bits (463), Expect = 2.0e-46
Identity = 101/160 (63.12%), Postives = 120/160 (75.00%), Query Frame = 1


Query: 55  FRSGGVKKSLKEEAMDSLKAISTGPIES-KSTPSPIQAFLGAIAAGVIALILYKFTTTIE 114
           FRS G KKSLKEEAMD+LKA+S+ PIE   STPS  QAFLGAIAAGVIALILYKFT T+E
Sbjct: 118 FRSTGAKKSLKEEAMDNLKALSSTPIEGGNSTPSAAQAFLGAIAAGVIALILYKFTVTVE 177

Query: 115 ASLNRQTVSDNFSVRQLTITIRTIVNGLCYLATFVFGINAIGLFLYSGQLAMNSVMEEGS 174
           + LNRQT+SDNFSVRQ+T+T+RTI+NG+CYLATFVFG+NA GL LYSGQLA N    E S
Sbjct: 178 SGLNRQTISDNFSVRQITVTVRTIINGICYLATFVFGLNAFGLLLYSGQLAFN----EDS 237

Query: 175 KDTEPKAKSDEQVSPPTSTAETTLDSTESSNSKDDQSSSN 214
            +   KA +     P  S++    D++E + S +DQSS +
Sbjct: 238 AEENMKATT----QPGDSSSG---DNSEVNKSNEDQSSGD 266

[Close]

BLAST of Csa3G236050 vs. NCBI nr
Match: gi|700202504|gb|KGN57637.1| (hypothetical protein Csa_3G236050 [Cucumis sativus])

HSP 1 Score: 414.5 bits (1064), Expect = 1.2e-112
Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 1


Query: 1   MPYCKSLEIVGLKIRCRCRMVIQEVNILLNLIPYQSYKCKVQFLLSGLFSGSEKFRSGGV 60
           MPYCKSLEIVGLKIRCRCRMVIQEVNILLNLIPYQSYKCKVQFLLSGLFSGSEKFRSGGV
Sbjct: 1   MPYCKSLEIVGLKIRCRCRMVIQEVNILLNLIPYQSYKCKVQFLLSGLFSGSEKFRSGGV 60

Query: 61  KKSLKEEAMDSLKAISTGPIESKSTPSPIQAFLGAIAAGVIALILYKFTTTIEASLNRQT 120
           KKSLKEEAMDSLKAISTGPIESKSTPSPIQAFLGAIAAGVIALILYKFTTTIEASLNRQT
Sbjct: 61  KKSLKEEAMDSLKAISTGPIESKSTPSPIQAFLGAIAAGVIALILYKFTTTIEASLNRQT 120

Query: 121 VSDNFSVRQLTITIRTIVNGLCYLATFVFGINAIGLFLYSGQLAMNSVMEEGSKDTEPKA 180
           VSDNFSVRQLTITIRTIVNGLCYLATFVFGINAIGLFLYSGQLAMNSVMEEGSKDTEPKA
Sbjct: 121 VSDNFSVRQLTITIRTIVNGLCYLATFVFGINAIGLFLYSGQLAMNSVMEEGSKDTEPKA 180

Query: 181 KSDEQVSPPTSTAETTLDSTESSNSKDDQSSSNL 215
           KSDEQVSPPTSTAETTLDSTESSNSKDDQSSSNL
Sbjct: 181 KSDEQVSPPTSTAETTLDSTESSNSKDDQSSSNL 214

[Close]

BLAST of Csa3G236050 vs. NCBI nr
Match: gi|778688583|ref|XP_011652784.1| (PREDICTED: uncharacterized protein LOC101221005 [Cucumis sativus])

HSP 1 Score: 308.1 bits (788), Expect = 1.2e-80
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 1


Query: 54  KFRSGGVKKSLKEEAMDSLKAISTGPIESKSTPSPIQAFLGAIAAGVIALILYKFTTTIE 113
           KFRSGGVKKSLKEEAMDSLKAISTGPIESKSTPSPIQAFLGAIAAGVIALILYKFTTTIE
Sbjct: 691 KFRSGGVKKSLKEEAMDSLKAISTGPIESKSTPSPIQAFLGAIAAGVIALILYKFTTTIE 750

Query: 114 ASLNRQTVSDNFSVRQLTITIRTIVNGLCYLATFVFGINAIGLFLYSGQLAMNSVMEEGS 173
           ASLNRQTVSDNFSVRQLTITIRTIVNGLCYLATFVFGINAIGLFLYSGQLAMNSVMEEGS
Sbjct: 751 ASLNRQTVSDNFSVRQLTITIRTIVNGLCYLATFVFGINAIGLFLYSGQLAMNSVMEEGS 810

Query: 174 KDTEPKAKSDEQVSPPTSTAETTLDSTESSNSKDDQSSSNL 215
           KDTEPKAKSDEQVSPPTSTAETTLDSTESSNSKDDQSSSNL
Sbjct: 811 KDTEPKAKSDEQVSPPTSTAETTLDSTESSNSKDDQSSSNL 851

[Close]

BLAST of Csa3G236050 vs. NCBI nr
Match: gi|659112411|ref|XP_008456207.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103496210 [Cucumis melo])

HSP 1 Score: 296.2 bits (757), Expect = 4.6e-77
Identity = 155/161 (96.27%), Postives = 157/161 (97.52%), Query Frame = 1


Query: 54  KFRSGGVKKSLKEEAMDSLKAISTGPIESKSTPSPIQAFLGAIAAGVIALILYKFTTTIE 113
           KFRS GVKKSLKEEAMDSLKAISTGPI SKSTPSPIQAFLGAIAAGVIALILYKFTTTIE
Sbjct: 579 KFRSAGVKKSLKEEAMDSLKAISTGPIASKSTPSPIQAFLGAIAAGVIALILYKFTTTIE 638

Query: 114 ASLNRQTVSDNFSVRQLTITIRTIVNGLCYLATFVFGINAIGLFLYSGQLAMNSVMEEGS 173
           A+LNRQTVSDNFSVRQLTITIRTIVNGLCYLATFVFGINAIGLFLYSGQLAMNSVMEEGS
Sbjct: 639 AALNRQTVSDNFSVRQLTITIRTIVNGLCYLATFVFGINAIGLFLYSGQLAMNSVMEEGS 698

Query: 174 KDTEPKAKSDEQVSPPTSTAETTLDSTESSNSKDDQSSSNL 215
           KD EPKAK DEQVSPPTSTAETTL+STESSNSKDDQSSSNL
Sbjct: 699 KDKEPKAKRDEQVSPPTSTAETTLNSTESSNSKDDQSSSNL 739

[Close]

BLAST of Csa3G236050 vs. NCBI nr
Match: gi|694317935|ref|XP_009340517.1| (PREDICTED: uncharacterized protein LOC103932610 [Pyrus x bretschneideri])

HSP 1 Score: 218.8 bits (556), Expect = 9.4e-54
Identity = 113/158 (71.52%), Postives = 136/158 (86.08%), Query Frame = 1


Query: 54  KFRSGGVKKSLKEEAMDSLKAISTGPIESKSTPSPIQAFLGAIAAGVIALILYKFTTTIE 113
           K+RS GVKKSLK+EA+DSLKA+STG +E+K  PSP+QA LG I+AGVIALILYKFTTTIE
Sbjct: 131 KYRSSGVKKSLKDEALDSLKALSTGSVEAKGPPSPVQALLGGISAGVIALILYKFTTTIE 190

Query: 114 ASLNRQTVSDNFSVRQLTITIRTIVNGLCYLATFVFGINAIGLFLYSGQLAMNSVMEEGS 173
           ASLNRQT+SDNFSVRQ+TITIRTI+NGLCYLATFVFGINA+GL LY+GQLA+NS+ME+ +
Sbjct: 191 ASLNRQTISDNFSVRQITITIRTIINGLCYLATFVFGINAVGLVLYAGQLAINSIMEDIN 250

Query: 174 KDTEPKAKSDEQVSPPTSTAETTLDSTESSNSKDDQSS 212
           +DT+ + K  EQ     ST E+  +S E+SN KDDQSS
Sbjct: 251 EDTQTQGK--EQSGSLNSTVESPANSGENSN-KDDQSS 285

[Close]

BLAST of Csa3G236050 vs. NCBI nr
Match: gi|658029128|ref|XP_008350007.1| (PREDICTED: uncharacterized protein LOC103413308 [Malus domestica])

HSP 1 Score: 216.5 bits (550), Expect = 4.6e-53
Identity = 111/158 (70.25%), Postives = 135/158 (85.44%), Query Frame = 1


Query: 54  KFRSGGVKKSLKEEAMDSLKAISTGPIESKSTPSPIQAFLGAIAAGVIALILYKFTTTIE 113
           K+RS GVKKSLK+EA+DSLKA+STG +E+K  PSP+QA LG I+AGVIALILYKFTTTIE
Sbjct: 131 KYRSSGVKKSLKDEALDSLKALSTGSVEAKGPPSPVQALLGGISAGVIALILYKFTTTIE 190

Query: 114 ASLNRQTVSDNFSVRQLTITIRTIVNGLCYLATFVFGINAIGLFLYSGQLAMNSVMEEGS 173
           ASLNRQT+SDNFSVRQ+TITIRTI+NGLCYLATFVFGINA+GL LY+GQLA+NS+ME+ +
Sbjct: 191 ASLNRQTISDNFSVRQITITIRTIINGLCYLATFVFGINAVGLVLYAGQLAINSIMEDIN 250

Query: 174 KDTEPKAKSDEQVSPPTSTAETTLDSTESSNSKDDQSS 212
           +DT+   + +EQ     ST E+  +S E+SN KDDQ S
Sbjct: 251 EDTQ--TQGEEQSGSLNSTVESPTNSGENSN-KDDQDS 285

The following BLAST results are available for this feature:

BLAST of Csa3G236050 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAG2_CUCSA	8.1e-113	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G236050 PE=4 SV=1	[more]
B9SB97_RICCO	2.3e-51	65.00	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0649730 PE=4 SV=1	[more]
A0A067LBT5_JATCU	5.2e-51	64.38	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15296 PE=4 SV=1	[more]
W9R7B4_9ROSA	1.5e-50	67.72	Uncharacterized protein OS=Morus notabilis GN=L484_012166 PE=4 SV=1	[more]
B9I1E4_POPTR	1.5e-50	65.22	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s10000g PE=4 SV=2	[more]

BLAST of Csa3G236050 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G15110.1	2.0e-46	63.13	unknown protein	[more]

BLAST of Csa3G236050 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700202504\|gb\|KGN57637.1\|	1.2e-112	100.00	hypothetical protein Csa_3G236050 [Cucumis sativus]	[more]
gi\|778688583\|ref\|XP_011652784.1\|	1.2e-80	100.00	PREDICTED: uncharacterized protein LOC101221005 [Cucumis sativus]	[more]
gi\|659112411\|ref\|XP_008456207.1\|	4.6e-77	96.27	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103496210 [Cucumis me...	[more]
gi\|694317935\|ref\|XP_009340517.1\|	9.4e-54	71.52	PREDICTED: uncharacterized protein LOC103932610 [Pyrus x bretschneideri]	[more]
gi\|658029128\|ref\|XP_008350007.1\|	4.6e-53	70.25	PREDICTED: uncharacterized protein LOC103413308 [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021434	DUF3082

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009535	chloroplast thylakoid membrane
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU091407	cucumber EST collection version 3.0	transcribed_cluster
CU108561	cucumber EST collection version 3.0	transcribed_cluster
CU118023	cucumber EST collection version 3.0	transcribed_cluster
CU126282	cucumber EST collection version 3.0	transcribed_cluster
CU145157	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa3G236050.1	Csa3G236050.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU108561	CU108561	transcribed_cluster
CU091407	CU091407	transcribed_cluster
CU145157	CU145157	transcribed_cluster
CU118023	CU118023	transcribed_cluster
CU126282	CU126282	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021434	Protein of unknown function DUF3082	PFAM	PF11282	DUF3082	coord: 86..163 score: 1.3
None	No IPR available	PANTHER	PTHR35733	FAMILY NOT NAMED	coord: 52..214 score: 8.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa3G236050	Cla004286	Watermelon (97103) v1	cuwmB243
Csa3G236050	MELO3C019395	Melon (DHL92) v3.5.1	cumeB166
Csa3G236050	ClCG05G009210	Watermelon (Charleston Gray)	cuwcgB230
Csa3G236050	Lsi05G001320	Bottle gourd (USVL1VR-Ls)	culsiB211
Csa3G236050	Cla97C05G091530	Watermelon (97103) v2	cuwmbB215
Csa3G236050	Bhi01G001148	Wax gourd	cuwgoB283
Csa3G236050	CSPI03G19510	Wild cucumber (PI 183967)	cpicuB120
Csa3G236050	Cucsa.032450	Cucumber (Gy14) v1	cgycuB003
Csa3G236050	CmaCh04G005560	Cucurbita maxima (Rimu)	cmacuB697
Csa3G236050	CmoCh04G005900	Cucurbita moschata (Rifu)	cmocuB687
Csa3G236050	Cp4.1LG01g01740	Cucurbita pepo (Zucchini)	cpecuB389
Csa3G236050	Carg13181	Silver-seed gourd	carcuB0043

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa3G236050	Cucurbita maxima (Rimu)	cmacuB320
Csa3G236050	Cucurbita moschata (Rifu)	cmocuB307
Csa3G236050	Cucurbita pepo (Zucchini)	cpecuB205
Csa3G236050	Cucumber (Gy14) v2	cgybcuB109
Csa3G236050	Melon (DHL92) v3.6.1	cumedB238
Csa3G236050	Silver-seed gourd	carcuB0675